Query 021495
Match_columns 311
No_of_seqs 187 out of 310
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 04:58:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q7d_A Inositol-tetrakisphosph 100.0 5.9E-60 2E-64 453.4 31.0 281 26-310 16-313 (346)
2 1z2n_X Inositol 1,3,4-trisphos 100.0 1.4E-35 4.7E-40 277.8 23.6 272 25-310 8-301 (324)
3 3t7a_A Inositol pyrophosphate 100.0 1.7E-26 5.7E-31 216.0 23.5 254 23-308 2-290 (330)
4 1i7n_A Synapsin II; synapse, p 99.9 3.7E-26 1.3E-30 215.8 18.9 197 73-310 68-284 (309)
5 2p0a_A Synapsin-3, synapsin II 99.9 2.1E-25 7.1E-30 213.3 18.4 197 73-310 85-301 (344)
6 1pk8_A RAT synapsin I; ATP bin 99.9 6.5E-25 2.2E-29 214.1 17.6 197 73-310 180-396 (422)
7 1uc8_A LYSX, lysine biosynthes 99.9 1.1E-22 3.8E-27 184.8 16.7 225 45-310 13-256 (280)
8 4eg0_A D-alanine--D-alanine li 99.9 6.1E-22 2.1E-26 185.5 17.9 234 47-310 36-286 (317)
9 3r5x_A D-alanine--D-alanine li 99.9 4.1E-22 1.4E-26 184.8 15.7 228 47-310 26-270 (307)
10 3se7_A VANA; alpha-beta struct 99.9 9E-22 3.1E-26 187.0 16.5 228 48-310 27-312 (346)
11 1iow_A DD-ligase, DDLB, D-ALA\ 99.9 4.9E-21 1.7E-25 176.5 20.6 232 46-310 24-277 (306)
12 4fu0_A D-alanine--D-alanine li 99.8 2.4E-20 8.3E-25 178.1 14.4 194 90-310 115-319 (357)
13 3tqt_A D-alanine--D-alanine li 99.8 1.8E-19 6.3E-24 173.7 17.5 212 73-310 98-323 (372)
14 3k3p_A D-alanine--D-alanine li 99.8 1.2E-19 4.2E-24 175.6 15.9 257 27-310 36-343 (383)
15 1ehi_A LMDDL2, D-alanine:D-lac 99.8 4.3E-19 1.5E-23 170.8 19.5 214 72-310 92-323 (377)
16 2i87_A D-alanine-D-alanine lig 99.8 2.1E-19 7.1E-24 171.7 17.1 208 72-310 86-313 (364)
17 1e4e_A Vancomycin/teicoplanin 99.8 3.1E-19 1E-23 169.0 17.1 192 90-310 108-312 (343)
18 3e5n_A D-alanine-D-alanine lig 99.8 4.7E-19 1.6E-23 171.5 16.4 259 24-310 18-341 (386)
19 2fb9_A D-alanine:D-alanine lig 99.8 1.6E-18 5.6E-23 163.1 18.1 202 71-310 74-292 (322)
20 3ln6_A Glutathione biosynthesi 99.8 7.8E-19 2.7E-23 183.0 16.5 230 46-310 431-724 (750)
21 3i12_A D-alanine-D-alanine lig 99.8 1E-18 3.5E-23 167.3 16.1 205 73-310 98-322 (364)
22 3lwb_A D-alanine--D-alanine li 99.8 2.7E-18 9.2E-23 165.4 13.3 209 73-310 109-337 (373)
23 2pvp_A D-alanine-D-alanine lig 99.8 3.7E-17 1.3E-21 157.2 20.3 204 73-310 107-327 (367)
24 3ln7_A Glutathione biosynthesi 99.8 1.2E-17 4E-22 174.1 17.4 234 45-310 435-730 (757)
25 1gsa_A Glutathione synthetase; 99.7 9.8E-17 3.4E-21 147.6 15.5 217 46-310 22-290 (316)
26 3q2o_A Phosphoribosylaminoimid 99.7 2.1E-15 7.3E-20 144.9 20.3 238 28-310 14-281 (389)
27 3k5i_A Phosphoribosyl-aminoimi 99.7 1.3E-15 4.4E-20 147.8 17.2 242 26-310 22-294 (403)
28 3ax6_A Phosphoribosylaminoimid 99.7 2.6E-15 8.9E-20 143.4 18.9 223 45-310 13-264 (380)
29 3orq_A N5-carboxyaminoimidazol 99.7 1E-14 3.6E-19 140.0 22.0 222 45-309 24-276 (377)
30 4ffl_A PYLC; amino acid, biosy 99.6 1.4E-14 4.7E-19 137.6 20.3 211 45-310 13-247 (363)
31 3vot_A L-amino acid ligase, BL 99.6 1.9E-14 6.6E-19 139.5 21.7 221 47-309 19-292 (425)
32 3aw8_A PURK, phosphoribosylami 99.6 1.6E-14 5.6E-19 137.3 20.1 222 45-310 11-265 (369)
33 2z04_A Phosphoribosylaminoimid 99.6 5.6E-15 1.9E-19 140.2 14.7 218 45-310 13-257 (365)
34 1kjq_A GART 2, phosphoribosylg 99.6 9.6E-15 3.3E-19 139.5 14.4 222 45-309 23-284 (391)
35 2dwc_A PH0318, 433AA long hypo 99.6 1.2E-14 4.3E-19 141.2 13.9 226 44-310 30-298 (433)
36 4dim_A Phosphoribosylglycinami 99.6 1.8E-14 6.2E-19 138.3 14.8 225 45-310 19-282 (403)
37 4e4t_A Phosphoribosylaminoimid 99.6 4.2E-14 1.4E-18 138.0 16.9 235 27-309 34-305 (419)
38 3df7_A Putative ATP-grAsp supe 99.6 5.9E-14 2E-18 131.3 17.0 178 72-310 68-251 (305)
39 3eth_A Phosphoribosylaminoimid 99.6 2.5E-13 8.4E-18 130.2 19.9 219 45-309 13-244 (355)
40 2r85_A PURP protein PF1517; AT 99.5 4.6E-13 1.6E-17 124.5 20.3 226 44-310 12-290 (334)
41 2pn1_A Carbamoylphosphate synt 99.5 9.4E-14 3.2E-18 129.6 15.0 175 90-310 90-275 (331)
42 3lp8_A Phosphoribosylamine-gly 99.5 5.8E-13 2E-17 130.7 15.8 185 90-309 99-310 (442)
43 3vmm_A Alanine-anticapsin liga 99.5 1.1E-12 3.6E-17 130.2 17.7 203 46-309 92-332 (474)
44 1a9x_A Carbamoyl phosphate syn 99.5 4.5E-13 1.5E-17 144.6 15.6 229 46-309 31-305 (1073)
45 3mjf_A Phosphoribosylamine--gl 99.5 6.2E-13 2.1E-17 130.0 15.1 214 46-310 57-296 (431)
46 2yw2_A Phosphoribosylamine--gl 99.4 1.2E-12 4.2E-17 126.6 16.0 178 98-310 85-290 (424)
47 2ip4_A PURD, phosphoribosylami 99.4 7.6E-13 2.6E-17 127.9 14.3 178 98-310 84-284 (417)
48 1a9x_A Carbamoyl phosphate syn 99.4 7.5E-13 2.6E-17 142.9 15.4 224 46-310 583-848 (1073)
49 2xcl_A Phosphoribosylamine--gl 99.4 1.5E-12 5.1E-17 125.9 15.2 180 98-310 85-290 (422)
50 1vkz_A Phosphoribosylamine--gl 99.4 1E-12 3.5E-17 127.3 13.9 177 101-310 93-292 (412)
51 2vpq_A Acetyl-COA carboxylase; 99.4 3E-12 1E-16 125.0 15.9 174 97-309 96-294 (451)
52 2yrx_A Phosphoribosylglycinami 99.4 3.5E-12 1.2E-16 124.8 16.5 186 91-310 100-311 (451)
53 3ouz_A Biotin carboxylase; str 99.4 2.6E-12 9E-17 125.4 15.3 173 98-309 102-298 (446)
54 2qk4_A Trifunctional purine bi 99.4 3.1E-12 1.1E-16 125.1 14.8 180 98-310 111-317 (452)
55 3glk_A Acetyl-COA carboxylase 99.4 1.8E-12 6E-17 130.7 12.5 175 98-309 147-366 (540)
56 2dzd_A Pyruvate carboxylase; b 99.4 3.6E-12 1.2E-16 124.9 13.7 173 98-309 103-298 (461)
57 1ulz_A Pyruvate carboxylase N- 99.4 1.3E-12 4.6E-17 127.4 10.3 174 98-309 97-293 (451)
58 3jrx_A Acetyl-COA carboxylase 99.4 3.6E-12 1.2E-16 129.5 13.3 175 98-309 163-382 (587)
59 2w70_A Biotin carboxylase; lig 99.4 1.9E-11 6.4E-16 119.2 17.1 172 98-309 98-294 (449)
60 3hbl_A Pyruvate carboxylase; T 99.3 3.4E-11 1.1E-15 130.7 19.6 172 98-309 101-296 (1150)
61 1w96_A ACC, acetyl-coenzyme A 99.3 3E-11 1E-15 121.7 15.2 175 100-309 158-373 (554)
62 3n6r_A Propionyl-COA carboxyla 99.3 7.6E-12 2.6E-16 129.2 10.2 179 91-309 92-294 (681)
63 3u9t_A MCC alpha, methylcroton 99.3 1.1E-11 3.7E-16 128.0 10.4 174 98-309 124-320 (675)
64 3va7_A KLLA0E08119P; carboxyla 99.2 1.1E-10 3.9E-15 127.2 17.3 209 45-309 92-323 (1236)
65 2qf7_A Pyruvate carboxylase pr 99.2 8.4E-11 2.9E-15 127.8 12.7 174 98-309 117-314 (1165)
66 2pbz_A Hypothetical protein; N 99.0 1.2E-08 4.1E-13 96.5 17.2 137 45-208 13-172 (320)
67 2r7k_A 5-formaminoimidazole-4- 98.7 1E-06 3.4E-11 84.5 20.9 226 45-308 29-315 (361)
68 2cqy_A Propionyl-COA carboxyla 98.7 1E-10 3.5E-15 91.5 -8.2 92 108-213 2-108 (108)
69 3tig_A TTL protein; ATP-grAsp, 98.3 2.8E-06 9.6E-11 81.9 11.8 152 47-213 19-210 (380)
70 1wr2_A Hypothetical protein PH 98.2 4.7E-07 1.6E-11 81.2 1.8 92 112-215 19-130 (238)
71 3ufx_B Succinyl-COA synthetase 97.3 0.00013 4.5E-09 70.6 4.4 91 116-217 6-110 (397)
72 2nu8_B SCS-beta, succinyl-COA 97.3 0.00015 5.2E-09 70.0 4.4 92 114-216 4-117 (388)
73 2io8_A Bifunctional glutathion 97.0 0.013 4.3E-07 59.8 15.6 173 30-223 381-600 (619)
74 2fp4_B Succinyl-COA ligase [GD 96.9 0.0006 2.1E-08 65.9 4.4 91 115-216 5-124 (395)
75 3n6x_A Putative glutathionylsp 92.0 0.07 2.4E-06 52.7 2.8 170 35-218 223-441 (474)
76 2vob_A Trypanothione synthetas 90.1 6.3 0.00021 40.3 15.1 157 47-223 414-615 (652)
77 3mwd_A ATP-citrate synthase; A 86.6 0.56 1.9E-05 45.6 4.5 82 134-216 26-128 (425)
78 3pff_A ATP-citrate synthase; p 56.3 9.4 0.00032 40.1 4.5 82 134-216 26-128 (829)
79 3s99_A Basic membrane lipoprot 43.0 46 0.0016 30.9 6.7 83 21-105 19-118 (356)
80 1duv_G Octase-1, ornithine tra 32.2 1E+02 0.0035 28.6 7.1 73 27-106 43-128 (333)
81 1e2b_A Enzyme IIB-cellobiose; 32.1 35 0.0012 26.0 3.3 77 42-121 17-95 (106)
82 2xko_C PIPX, global nitrogen r 31.0 13 0.00045 28.0 0.6 19 197-215 4-24 (89)
83 1sn9_A BBAT, tetrameric beta-B 30.8 33 0.0011 19.4 2.1 21 263-283 4-24 (26)
84 3guv_A Site-specific recombina 30.1 2.1E+02 0.0072 22.8 8.1 38 27-64 4-49 (167)
85 1vlv_A Otcase, ornithine carba 30.1 1.2E+02 0.0043 27.9 7.3 74 27-107 57-143 (325)
86 3n5b_B ASR0485 protein; PII, P 29.4 16 0.00054 28.6 0.8 25 192-216 22-48 (112)
87 1dxh_A Ornithine carbamoyltran 28.3 1E+02 0.0035 28.6 6.4 73 27-106 44-129 (335)
88 3tpf_A Otcase, ornithine carba 27.9 1.1E+02 0.0038 28.0 6.4 74 27-107 35-121 (307)
89 2w37_A Ornithine carbamoyltran 27.8 1.1E+02 0.0038 28.7 6.5 73 27-106 66-151 (359)
90 4a8t_A Putrescine carbamoyltra 27.5 1.1E+02 0.0038 28.4 6.4 74 27-107 62-148 (339)
91 2ef0_A Ornithine carbamoyltran 25.9 1.1E+02 0.0037 27.9 6.0 73 27-106 44-129 (301)
92 3l49_A ABC sugar (ribose) tran 25.8 1.8E+02 0.0061 24.6 7.2 39 27-66 4-45 (291)
93 2l2q_A PTS system, cellobiose- 25.8 2.1E+02 0.0072 21.4 7.2 81 42-124 18-101 (109)
94 1oth_A Protein (ornithine tran 25.7 1.2E+02 0.0043 27.8 6.4 73 27-106 45-130 (321)
95 3gd5_A Otcase, ornithine carba 25.5 1.1E+02 0.0039 28.2 6.1 74 27-107 47-133 (323)
96 3jy6_A Transcriptional regulat 24.5 2.3E+02 0.0078 23.8 7.7 78 25-105 4-93 (276)
97 1pvv_A Otcase, ornithine carba 24.4 1.2E+02 0.0041 27.8 6.0 74 27-107 45-131 (315)
98 4a8p_A Putrescine carbamoyltra 24.3 1.3E+02 0.0043 28.3 6.2 74 27-107 40-126 (355)
99 4h31_A Otcase, ornithine carba 24.0 1.4E+02 0.0046 27.9 6.4 71 27-104 69-152 (358)
100 3mi6_A Alpha-galactosidase; NE 23.6 31 0.001 35.8 1.9 68 35-103 451-525 (745)
101 1b78_A Pyrophosphatase; struct 23.2 31 0.0011 29.6 1.6 33 270-311 55-88 (193)
102 2avx_A Regulatory protein SDIA 22.9 94 0.0032 24.9 4.5 56 45-106 27-82 (171)
103 3n6x_A Putative glutathionylsp 22.8 61 0.0021 31.7 3.8 24 281-306 141-164 (474)
104 4ep1_A Otcase, ornithine carba 22.8 1.3E+02 0.0044 28.0 5.9 74 27-107 69-155 (340)
105 3r7f_A Aspartate carbamoyltran 22.4 1.3E+02 0.0045 27.4 5.8 89 27-122 35-142 (304)
106 2i6u_A Otcase, ornithine carba 21.2 1.2E+02 0.004 27.8 5.2 73 27-106 38-123 (307)
107 3uug_A Multiple sugar-binding 20.6 2.7E+02 0.0092 23.9 7.5 66 27-107 2-69 (330)
No 1
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=100.00 E-value=5.9e-60 Score=453.36 Aligned_cols=281 Identities=32% Similarity=0.557 Sum_probs=238.6
Q ss_pred CccEEEEEEeCchhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCC------------hhHHHHHHHH
Q 021495 26 PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSG------------MEWCKIIEDY 93 (311)
Q Consensus 26 ~~~~~Vgy~~~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~------------~~~~~~l~~y 93 (311)
+++++|||||++||.++|++++|+++++++|++++.||++.++.+|++||+||||+++ ..|.+.|++|
T Consensus 16 ~~~~~vG~~l~~kk~~~~~~~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~~~ 95 (346)
T 2q7d_A 16 LKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEY 95 (346)
T ss_dssp GTTCEEEEECCHHHHHHHTHHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCceEEEEEECcccchhhhHHHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999987 3678889999
Q ss_pred HHhCCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccC-CCCcchhhHhcCCCCcEEEeeCcCCCC
Q 021495 94 RQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKD-SLSIPDQVFEAGLKLPLVAKPLVVDGS 172 (311)
Q Consensus 94 ~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~-~~~~~~~l~~~~l~fP~VvKP~~a~GS 172 (311)
...||+++||||+.+|+.|.||+.|++.|+++.......+|++|+++++.+. .++..+.+...+++||+|+||+.++||
T Consensus 96 ~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~Gs 175 (346)
T 2q7d_A 96 IDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT 175 (346)
T ss_dssp HHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCSST
T ss_pred HHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCCcc
Confidence 9999999999999999999999999999998644334468999999999643 234444455678999999999999999
Q ss_pred CcceeeEEEcCccccccCCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccccceeeeecc--ccccccc
Q 021495 173 AKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPR--VSSAAAS 250 (311)
Q Consensus 173 ~~sh~m~lv~~~~~L~~l~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~--vs~~~~~ 250 (311)
. +|+|++|++.++|+.++.|+|+||||+|+|++|||||||+++++++|+|+|+|+.+. +..++|+|.+ +++++..
T Consensus 176 ~-s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~sl~~~~~~~--~~~~~~~f~s~~~~~~g~~ 252 (346)
T 2q7d_A 176 N-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGT--SDRESIFFNSHNVSKPESS 252 (346)
T ss_dssp T-CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEEEECCCCCC------CCCCEEEEGGGTSSTTCC
T ss_pred e-eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEecCCCcCcCc--cccccccccceeeccCCcc
Confidence 7 999999999999999999999999999999999999999999999999999987654 2357888876 6766544
Q ss_pred CCCCCCCC--CCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 251 ADDADLDP--GIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 251 a~~~~~~p--~~~~~p~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
+.....++ ..+++++.++++++|.+++++||+++||||+|++.++| +|||+|||+||||
T Consensus 253 ~~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii~~~~~g-~~~VlEVN~~PG~ 313 (346)
T 2q7d_A 253 SVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQTG-QHAVIDINAFPGY 313 (346)
T ss_dssp CGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECTTTC-CEEEEEEEESCCC
T ss_pred ccccccccccccccCCChHHHHHHHHHHHHHhCCceEeeEEEeecCCC-CEEEEEEeCCccc
Confidence 32222111 12456778899999999999999999999999986455 6999999999998
No 2
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=100.00 E-value=1.4e-35 Score=277.80 Aligned_cols=272 Identities=19% Similarity=0.334 Sum_probs=207.3
Q ss_pred CCccEEEEEEeCchhhhccchhHHHHHHHhCCCeE--EEeeCCCCCCCCC-CccEEEEecCCh--hHHHHHHHHHHhCCC
Q 021495 25 QPERLVVGYALTSKKKKSFLQPKLEILARNKGISF--VAIDQNRPLSDQG-PFDVVLHKLSGM--EWCKIIEDYRQKHPE 99 (311)
Q Consensus 25 ~~~~~~Vgy~~~~kK~~~~~~~~l~~~~~~~gi~~--v~iD~~~pl~~qg-p~DviLhK~t~~--~~~~~l~~y~~~hP~ 99 (311)
.++..+||++..+++. ++ .+...++++|+++ +.+|.+.++..++ ++|+++|++++. .+.+.|+.+...+++
T Consensus 8 ~~~~m~i~il~~~~~~-s~---~l~~al~~~G~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~~~~l~~~~~~~~g 83 (324)
T 1z2n_X 8 TKQTVSLFIWLPESKQ-KT---LFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRTHPVGKMADEMRKYEKDHPK 83 (324)
T ss_dssp --CEEEEEEECCHHHH-HH---HBSSCCSEEEEEETTEEEEEEEESSCCSSCCSEEEECCSCSSSHHHHHHHHHHHHCTT
T ss_pred cCCcEEEEEEEchhhh-hh---hHHHHHHhcCcEEEEEEecCCCCccccCCCceEEEEeccchHHHHHHHHHHHHHhCCC
Confidence 3456789999988876 55 5777889999999 9999987887777 899999999875 567778888888899
Q ss_pred eeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeE
Q 021495 100 VTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 179 (311)
Q Consensus 100 v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~ 179 (311)
++++|++++++.+.||..+.+.|+++ +|++|++..+++. +++.+.+...+++||+|+||..++||..+|++.
T Consensus 84 ~~~~~~~~~~~~~~dK~~~~~~l~~~-------gi~~P~~~~~~~~-~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv~ 155 (324)
T 1z2n_X 84 VLFLESSAIHDMMSSREEINALLIKN-------NIPIPNSFSVKSK-EEVIQLLQSKQLILPFIVKPENAQGTFNAHQMK 155 (324)
T ss_dssp SEEETCHHHHHHHTBHHHHHHHHHHT-------TCCCSCEEEESSH-HHHHHHHHTTCSCSSEEEEESBCSSSSGGGEEE
T ss_pred CeEeCCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEEeCCH-HHHHHHHHHcCCCCCEEEeeCCCCCCccceeeE
Confidence 99999999999999999999999885 7999999998532 222222333457899999999977776779999
Q ss_pred EEcCccccccCCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccccceeeeec----------cccccc-
Q 021495 180 LAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFP----------RVSSAA- 248 (311)
Q Consensus 180 lv~~~~~L~~l~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~----------~vs~~~- 248 (311)
++.+.++|..++.++++||||++.|++++|+|+|+++..+.|++++++..++..+ ..+|++. .+++..
T Consensus 156 ~v~~~~~l~~~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~~k~~~ 234 (324)
T 1z2n_X 156 IVLEQEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKS-VDFNNQHLEDILSWPEGVIDKQDI 234 (324)
T ss_dssp EECSGGGGTTCCSSEEEEECCCCTTCEEEEEEETTEEEEEEECCCCCCCCSSCCE-EEEETTBGGGGGGSCTTSSCHHHH
T ss_pred EEeCHHHHhhcCCCEEEEEccCCCCcEEEEEEECCEEEEEEecCcccccCCCccc-eeeccccchhhhcccccccccccc
Confidence 9999999999999999999999889999999999999988899888765442211 1122221 111100
Q ss_pred ---ccCCC-CCC--CCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 249 ---ASADD-ADL--DPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 249 ---~~a~~-~~~--~p~~~~~p~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
+..++ +.. .+......+.+.++++|.++.++||+.++|||++++.++| ++||+|||++|||
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~lg~~~~~vD~~~~~~~g-~~~vlEvN~~Pg~ 301 (324)
T 1z2n_X 235 IENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQG-NPLVVDVNVFPSY 301 (324)
T ss_dssp HHHHTTTTCCCBCSCTTTTTSCCHHHHHHHHHHHHHHHTCSEEEEEEECGGGCS-SCEEEEEEESCCT
T ss_pred ccccccchhhccccCCccccCCCHHHHHHHHHHHHHHhCCcEEeeEEEEEcCCC-CEEEEEEcCCCCc
Confidence 00000 000 1111111123689999999999999999999999975455 6899999999997
No 3
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=99.95 E-value=1.7e-26 Score=216.02 Aligned_cols=254 Identities=18% Similarity=0.195 Sum_probs=177.6
Q ss_pred CCCCccEEEEEEeCchhhhccchhHHHHHHHhCC-CeEEEe----eCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhC
Q 021495 23 VLQPERLVVGYALTSKKKKSFLQPKLEILARNKG-ISFVAI----DQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKH 97 (311)
Q Consensus 23 ~~~~~~~~Vgy~~~~kK~~~~~~~~l~~~~~~~g-i~~v~i----D~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~h 97 (311)
+++.+.++||.|--+||.+|=--+.+.+-..+.| ++++-- =++.|.++..-.|++|--.++---.+...+|.+.
T Consensus 2 ~~~~~~~~~gvcam~~k~~s~pm~~il~rl~~~~~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~y~~l- 80 (330)
T 3t7a_A 2 SFTERQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVAYAKL- 80 (330)
T ss_dssp ----CCEEEEEESCHHHHTSHHHHHHHHHHTTSTTEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHHHHHH-
T ss_pred CCCCCceEEEEEecccccccHHHHHHHHHhcccCcEEEEEeCCCceecCCcccCCcCCEEEEeccCCCcHHHHHHHHHH-
Confidence 3456789999999999976655545444343433 444332 2345778888899999888775445567777766
Q ss_pred CCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCC-----------CcchhhHhcCCCCcEEEee
Q 021495 98 PEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL-----------SIPDQVFEAGLKLPLVAKP 166 (311)
Q Consensus 98 P~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~-----------~~~~~l~~~~l~fP~VvKP 166 (311)
-+..+||.+.++..++||..+|+.|++. +|++|+++++..+.. +..+ .....+++|+|.||
T Consensus 81 r~p~~INd~~~q~~~~DK~~~~~iL~~~-------gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~-~~g~~l~kPfVeKP 152 (330)
T 3t7a_A 81 RNPFVINDLNMQYLIQDRREVYSILQAE-------GILLPRYAILNRDPNNPKECNLIEGEDHVE-VNGEVFQKPFVEKP 152 (330)
T ss_dssp HCCEESBCSTHHHHHTBHHHHHHHHHHT-------TCCCCCEEEECCBTTBGGGSSEEECSSEEE-ETTEEEESSEEEEE
T ss_pred hCCceeCCHHHHHHHHHHHHHHHHHHHc-------CCCCCCEEEEeCCCCCccccceeccchhhh-hccccccCCeeEcc
Confidence 4688999999999999999999999984 899999999965321 1111 12356789999999
Q ss_pred CcCC------------CCCcceeeEEEcCcccc------ccCCCCeEEEecccCCCeEEEEEEECCEEEE-EEEecCCCC
Q 021495 167 LVVD------------GSAKSHELFLAYDRFSL------SELEPPMLLQEFVNHGGILFKIYIIGETIKV-VRRFSLPNV 227 (311)
Q Consensus 167 ~~a~------------GS~~sh~m~lv~~~~~L------~~l~~P~vvQEfInH~G~~~KVyVVGd~v~~-~~R~Slpn~ 227 (311)
+.|. |.-+..-+..+-|.++. ..-+..+++||||+.+|+|+||||||+++.+ +.|+| |.
T Consensus 153 v~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am~R~s-p~- 230 (330)
T 3t7a_A 153 VSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKS-PA- 230 (330)
T ss_dssp SBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEEEEEC-TT-
T ss_pred cccccCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCCCCceEEEEEECCEEEEEEEEeC-CC-
Confidence 9952 22234555556555442 1125679999999999999999999999876 56766 31
Q ss_pred ccccccccceeeeecccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCC
Q 021495 228 SKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYF 307 (311)
Q Consensus 228 ~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyf 307 (311)
..++|.+| .+.++...+ ...+++.+++|.++.+++|+++.|||+++.+ + ++||+|||.|
T Consensus 231 ~~G~~r~N--------------~~gG~~~~~----v~Lt~eek~iA~kaa~a~G~~v~GVDlLrs~--~-~~~V~EVNg~ 289 (330)
T 3t7a_A 231 LDGKVERD--------------SEGKEVRYP----VILNAREKLIAWKVCLAFKQTVCGFDLLRAN--G-QSYVCDVNGF 289 (330)
T ss_dssp SSCBCCBC--------------TTSCBCCEE----CCCCHHHHHHHHHHHHHTTBSEEEEEEEEET--T-EEEEEEEEES
T ss_pred CCCcEEEc--------------CCCCceeee----ecCCHHHHHHHHHHHHHhCCceEEEEEEEEC--C-ccEEEEeCCC
Confidence 12345443 111111112 2345678999999999999999999999985 2 5789999999
Q ss_pred C
Q 021495 308 P 308 (311)
Q Consensus 308 P 308 (311)
|
T Consensus 290 ~ 290 (330)
T 3t7a_A 290 S 290 (330)
T ss_dssp C
T ss_pred c
Confidence 8
No 4
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.94 E-value=3.7e-26 Score=215.75 Aligned_cols=197 Identities=12% Similarity=0.160 Sum_probs=147.2
Q ss_pred CccEEEEecCCh------hHHHHHHHHHHhCCCeeeeCchhHHHHhcCH----HHHHHHHHhccccCCCCccccCcEEEE
Q 021495 73 PFDVVLHKLSGM------EWCKIIEDYRQKHPEVTILDPPDAIKHLHNR----QSMLQDVADLNLSDCNGKVRVPRQMVI 142 (311)
Q Consensus 73 p~DviLhK~t~~------~~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR----~~~l~~l~~l~~~~~~~~i~~P~~~~i 142 (311)
.+|++|-|.... .|+..+. +++. -|++++|++++|..|.|| ..+++.|+++++ .++|.|.+...
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~vl~-~le~-~GvpviN~~~sI~~~~DK~~~~~~~~~~l~~~gi----~~~P~~~~~~~ 141 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHLVI-GMQY-AGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGG----EKFPLIEQTYY 141 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHHHH-HHHH-TTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEE
T ss_pred cCCEEEEecccccccccchHHHHHH-HHHH-CCccccCCHHHHHHhCCccHHHHHHHHHHHhCCC----CCCCCCCEEee
Confidence 479999998653 2454333 4433 599999999999999999 567788877643 24574444433
Q ss_pred ccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC-------CCCeEEEecccCCCeEEEEEEECCE
Q 021495 143 TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGET 215 (311)
Q Consensus 143 ~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~P~vvQEfInH~G~~~KVyVVGd~ 215 (311)
. +. .+ + ...++||+|+||.. || ++.+|.++.+++++.++ +..+++||||+ .|+|+||+|||++
T Consensus 142 ~-~~---~~-~-~~~~g~PvVvK~~~--Gs-~G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VvGg~ 211 (309)
T 1i7n_A 142 P-NH---RE-M-LTLPTFPVVVKIGH--AH-SGMGKVKVENHYDFQDIASVVALTQTYATAEPFID-AKYDIRVQKIGNN 211 (309)
T ss_dssp S-SG---GG-G-SSCCCSSEEEEESS--CS-TTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTE
T ss_pred C-Ch---hh-h-hhccCCCEEEEeCC--CC-ceeCeEEECCHHHHHHHHHHHhccCCeEEEEeecC-CCceEEEEEECCE
Confidence 2 21 12 1 23578999999998 77 68999999999887553 67889999999 7999999999999
Q ss_pred EEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEeCC
Q 021495 216 IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL-GLRLFNIDMIREHG 294 (311)
Q Consensus 216 v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~L-GL~lfG~Dvi~~~~ 294 (311)
+.+++|+|.. ++|.+|. + ++..+ .++++++.+++|.++.+++ |++++|+|+|.+.
T Consensus 212 v~a~~Rr~~~----g~wrtN~--------------~-~~~~e----~~~l~~e~~~la~~A~~a~gGldi~GVDll~~~- 267 (309)
T 1i7n_A 212 YKAYMRTSIS----GNWKTNT--------------G-SAMLE----QIAMSDRYKLWVDACSEMFGGLDICAVKAVHGK- 267 (309)
T ss_dssp EEEEEEESSC----TTTSCSC--------------C-CSSEE----EECCCHHHHHHHHHHTTGGGCCSEEEEEEEEET-
T ss_pred EEEEEEEcCC----CCCeecC--------------C-cceee----ecCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-
Confidence 9988999853 2454430 1 11111 2445677999999999999 8999999999875
Q ss_pred CCCeEEEEEecC--CCCC
Q 021495 295 MRDVFYVIDINY--FPGR 310 (311)
Q Consensus 295 tg~~~~ViDVNy--fPG~ 310 (311)
.| +++|+|||. +||+
T Consensus 268 ~g-~~~V~EVN~~~~P~~ 284 (309)
T 1i7n_A 268 DG-KDYIFEVMDCSMPLI 284 (309)
T ss_dssp TS-CEEEEEEECTTCCCC
T ss_pred CC-CEEEEEECCCCCCCc
Confidence 34 589999999 9997
No 5
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.93 E-value=2.1e-25 Score=213.29 Aligned_cols=197 Identities=12% Similarity=0.145 Sum_probs=147.8
Q ss_pred CccEEEEecCCh------hHHHHHHHHHHhCCCeeeeCchhHHHHhcCH----HHHHHHHHhccccCCCCccccCcEEEE
Q 021495 73 PFDVVLHKLSGM------EWCKIIEDYRQKHPEVTILDPPDAIKHLHNR----QSMLQDVADLNLSDCNGKVRVPRQMVI 142 (311)
Q Consensus 73 p~DviLhK~t~~------~~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR----~~~l~~l~~l~~~~~~~~i~~P~~~~i 142 (311)
.+|++|-|.... .|+.. .++++. -|+++||++++|..|.|| ..+++.|.++++ .++|.|.+...
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~v-l~~le~-~GvpviN~~~sI~~~~DK~~v~~~~l~~l~~~gi----~~~P~~~~t~~ 158 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSL-VIGLQY-GGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGP----EKFPLVEQTFF 158 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHH-HHHHHH-TTCCEESCHHHHHHTTCHHHHHHHHHHHHHHHCT----TTSCBCCCEEE
T ss_pred CCCEEEEeccccccccchhHHHH-HHHHHH-CCceecCCHHHHHhhCCchHHHHHHHHHHHHCCC----CCCCCCCEEec
Confidence 589999998663 24543 334433 599999999999999999 677888877643 24574444434
Q ss_pred ccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-------CCCCeEEEecccCCCeEEEEEEECCE
Q 021495 143 TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET 215 (311)
Q Consensus 143 ~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~P~vvQEfInH~G~~~KVyVVGd~ 215 (311)
. +...+ ...++||+|+||.. || ++.+|.++.+++++.+ .+..+++||||+ .|+|+||+|||++
T Consensus 159 ~-~~~~~-----~~~~g~PvVvK~~~--Gs-~G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VVGg~ 228 (344)
T 2p0a_A 159 P-NHKPM-----VTAPHFPVVVKLGH--AH-AGMGKIKVENQLDFQDITSVVAMAKTYATTEAFID-SKYDIRIQKIGSN 228 (344)
T ss_dssp S-SSTTC-----CCCSSSSEEEEESS--CC-TTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTE
T ss_pred C-chhhh-----hhccCCCEEEEeCC--CC-ceeCeEEECCHHHHHHHHHHHhccCCeEEEEeccC-CCccEEEEEECCE
Confidence 2 22211 23578999999998 77 6899999999988864 266789999999 7999999999999
Q ss_pred EEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEeCC
Q 021495 216 IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL-GLRLFNIDMIREHG 294 (311)
Q Consensus 216 v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~L-GL~lfG~Dvi~~~~ 294 (311)
+.+++|+|..+ +|++|. + ++..+ .++.+++.+++|.++.+++ |++++|||+|.+.
T Consensus 229 vva~~R~~~~g----~wrtN~--------------~-~~~~e----~~~l~~e~~~la~~Aa~a~gGldi~GVDll~~~- 284 (344)
T 2p0a_A 229 YKAYMRTSISG----NWKANT--------------G-SAMLE----QVAMTERYRLWVDSCSEMFGGLDICAVKAVHSK- 284 (344)
T ss_dssp EEEEEEEESSS----CSSTTS--------------S-SEEEE----EECCCHHHHHHHHHHTTGGGCCSEEEEEEEEET-
T ss_pred EEEEEEecCCC----CCeecC--------------C-ceEEE----eeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-
Confidence 99889987432 444431 0 11111 2445677999999999999 8999999999885
Q ss_pred CCCeEEEEEecC--CCCC
Q 021495 295 MRDVFYVIDINY--FPGR 310 (311)
Q Consensus 295 tg~~~~ViDVNy--fPG~ 310 (311)
.| ++||+|||. .||+
T Consensus 285 ~G-~~~VlEVN~~~~P~~ 301 (344)
T 2p0a_A 285 DG-RDYIIEVMDSSMPLI 301 (344)
T ss_dssp TS-CEEEEEEECTTCCCC
T ss_pred CC-CEEEEEEcCCCCCcc
Confidence 34 589999999 9997
No 6
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.92 E-value=6.5e-25 Score=214.05 Aligned_cols=197 Identities=11% Similarity=0.136 Sum_probs=146.8
Q ss_pred CccEEEEecCCh------hHHHHHHHHHHhCCCeeeeCchhHHHHhcCH----HHHHHHHHhccccCCCCccccCcEEEE
Q 021495 73 PFDVVLHKLSGM------EWCKIIEDYRQKHPEVTILDPPDAIKHLHNR----QSMLQDVADLNLSDCNGKVRVPRQMVI 142 (311)
Q Consensus 73 p~DviLhK~t~~------~~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR----~~~l~~l~~l~~~~~~~~i~~P~~~~i 142 (311)
.+|++|-|.... .|+..+ ++++. -|+++||++++|..|.|| ..+++.|.++++ .+++.|.+...
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vl-r~lE~-~GvpviNs~~sI~~~~DK~~vf~~~l~ll~~~gi----~~iP~t~~t~~ 253 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLV-IGLQY-AGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGT----EEFPLIDQTFY 253 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHH-HHHHH-TTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEE
T ss_pred CCCEEEEeccccccccchhHHHHH-HHHHH-CCccccCCHHHHHHhCCccHHHHHHHHHHHhCCC----CCCCCCceEec
Confidence 479999998653 245443 34433 599999999999999999 567788877643 24564444434
Q ss_pred ccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC-------CCCeEEEecccCCCeEEEEEEECCE
Q 021495 143 TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGET 215 (311)
Q Consensus 143 ~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~P~vvQEfInH~G~~~KVyVVGd~ 215 (311)
. +.. +. ...++||+|+||.. || ++.+|.++.++++++.+ +..+++||||+ .|+|+||+|||++
T Consensus 254 ~-~~~---~~--i~~~g~PvVvKp~~--GS-~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~-~g~DIRv~VVGg~ 323 (422)
T 1pk8_A 254 P-NHK---EM--LSSTTYPVVVKMGH--AH-SGMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-AKYDVRVQKIGQN 323 (422)
T ss_dssp S-SGG---GC--CCCSSSSEEEEESS--CC-TTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCC-EEEEEEEEEETTE
T ss_pred C-chh---hh--hhccCCCEEEEeCC--CC-ceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecC-CCceEEEEEECCE
Confidence 2 211 11 13578999999998 77 78999999999888652 56789999999 7999999999999
Q ss_pred EEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEeCC
Q 021495 216 IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL-GLRLFNIDMIREHG 294 (311)
Q Consensus 216 v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~L-GL~lfG~Dvi~~~~ 294 (311)
+.+++|++..+ +|++|- + ++..+ .++.+++.+++|.++.+++ |++++|||+|.+.
T Consensus 324 vva~~Rr~~~g----~WrtNv--------------g-~g~~e----~i~lt~e~~elA~kAaka~gGldiaGVDlL~s~- 379 (422)
T 1pk8_A 324 YKAYMRTSVSG----NWKTNT--------------G-SAMLE----QIAMSDRYKLWVDTCSEIFGGLDICAVEALHGK- 379 (422)
T ss_dssp EEEEEEEESSS----CSSTTS--------------S-CEEEE----EECCCHHHHHHHHHHTTGGGCCSEEEEEEEEET-
T ss_pred EEEEEEEcCCC----Cceecc--------------C-ceeee----eeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-
Confidence 99889987432 454431 0 11111 1445678999999999999 8999999999886
Q ss_pred CCCeEEEEEecC--CCCC
Q 021495 295 MRDVFYVIDINY--FPGR 310 (311)
Q Consensus 295 tg~~~~ViDVNy--fPG~ 310 (311)
.| ++||+|||. .||+
T Consensus 380 dG-~~~VlEVN~s~~P~~ 396 (422)
T 1pk8_A 380 DG-RDHIIEVVGSSMPLI 396 (422)
T ss_dssp TS-CEEEEEEECTTCCCC
T ss_pred CC-CEEEEEECCCCCCCc
Confidence 34 589999999 9987
No 7
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.89 E-value=1.1e-22 Score=184.80 Aligned_cols=225 Identities=14% Similarity=0.164 Sum_probs=157.6
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCCCC-------CCCccEEEEecCChhHHHHHHHHHHhCCCeeeeCchhHHHHhcCHHH
Q 021495 45 QPKLEILARNKGISFVAIDQNRPLSD-------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQS 117 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl~~-------qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~~ 117 (311)
...+.+.++++|++++.+|.+..... ...+|+++++..+......++++++. -++++++|+++++.+.||..
T Consensus 13 ~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~dK~~ 91 (280)
T 1uc8_A 13 ERMLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTA-LGIPVVNRPEVIEACGDKWA 91 (280)
T ss_dssp HHHHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSHHHHHHHHHHHHH-TTCCEESCHHHHHHHHBHHH
T ss_pred HHHHHHHHHHcCCcEEEEehhhceeeccCCCcccCCCCEEEECCccchhhHHHHHHHHH-CCCceeCCHHHHHHhCCHHH
Confidence 34588899999999999998654311 23679667776543323345555555 37888999999999999999
Q ss_pred HHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc----C---
Q 021495 118 MLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE----L--- 190 (311)
Q Consensus 118 ~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~----l--- 190 (311)
+.+.++++ +|++|++..+.+. ++..+. ...++||+|+||..++| |.++.++.+.++|.+ +
T Consensus 92 ~~~~l~~~-------gi~~p~~~~~~~~-~~~~~~--~~~~~~p~vvKp~~g~~---~~gv~~v~~~~el~~~~~~~~~~ 158 (280)
T 1uc8_A 92 TSVALAKA-------GLPQPKTALATDR-EEALRL--MEAFGYPVVLKPVIGSW---GRLLAXXXXXXXXXXXXXXKEVL 158 (280)
T ss_dssp HHHHHHHT-------TCCCCCEEEESSH-HHHHHH--HHHHCSSEEEECSBCCB---CSHHHHHHHHHC-----------
T ss_pred HHHHHHHc-------CcCCCCeEeeCCH-HHHHHH--HHHhCCCEEEEECCCCC---cccceecccccccchhhhhHhhh
Confidence 99999885 7899999988532 112121 23468999999998544 577888888877654 1
Q ss_pred ----CCCeEEEecccCCCeEEEEEEECCEEEEE-EEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC
Q 021495 191 ----EPPMLLQEFVNHGGILFKIYIIGETIKVV-RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP 265 (311)
Q Consensus 191 ----~~P~vvQEfInH~G~~~KVyVVGd~v~~~-~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~ 265 (311)
..++++||||+..+++++++++|+++... .|.+ .+|. .+ .... +...| ..+
T Consensus 159 ~~~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~~~~~~-~~~~-----~~--------~~~g------~~~~p--~~l-- 214 (280)
T 1uc8_A 159 GGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRS-AHWI-----TN--------TARG------GQAEN--CPL-- 214 (280)
T ss_dssp -CTTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC----------------------------------CEE--CCC--
T ss_pred cccCCCcEEEEeccCCCCceEEEEEECCEEEEEEEEec-CCcc-----cc--------ccCC------ccccC--CCC--
Confidence 46899999999778999999999998764 3432 2222 11 0001 11111 112
Q ss_pred hHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 266 RPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 266 ~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
.+.++++|.++.++||+.++|+|++++.+ | ++++|||.-||+
T Consensus 215 ~~~~~~~~~~~~~~lg~g~~~vD~~~~~~-g--~~~iEiN~r~g~ 256 (280)
T 1uc8_A 215 TEEVARLSVKAAEAVGGGVVAVDLFESER-G--LLVNEVNHTMEF 256 (280)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEEEEETT-E--EEEEEEETTCCC
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEEEeCC-C--eEEEEEeCCCCc
Confidence 35799999999999999999999999863 3 899999999996
No 8
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.88 E-value=6.1e-22 Score=185.50 Aligned_cols=234 Identities=15% Similarity=0.107 Sum_probs=155.7
Q ss_pred HHHHHHHhCCCeEEEeeCCCCCCC---CCCccEEEEecCChh-HHHHHHHHHHhCCCeeee-CchhHHHHhcCHHHHHHH
Q 021495 47 KLEILARNKGISFVAIDQNRPLSD---QGPFDVVLHKLSGME-WCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQD 121 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~---qgp~DviLhK~t~~~-~~~~l~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~ 121 (311)
.+.+.+++.|++++.||.+..... ...+|+++--+.+.. ....++.+++. -+++++ +++.++..+.||..+.+.
T Consensus 36 ~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~~hg~~ge~~~~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~ 114 (317)
T 4eg0_A 36 LVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHGGYGENGQIQGALDF-YGIRYTGSGVLGSALGLDKFRTKLV 114 (317)
T ss_dssp HHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEECCCSGGGTSSHHHHHHHH-HTCEESSCCHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEcCCCCCCchHHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHH
Confidence 467888999999999996543222 357899987665421 01224444433 378888 667999999999999999
Q ss_pred HHhccccCCCCccccCcEEEEccCCCCcchhh--HhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-------CCC
Q 021495 122 VADLNLSDCNGKVRVPRQMVITKDSLSIPDQV--FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEP 192 (311)
Q Consensus 122 l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l--~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~ 192 (311)
|+++ +|++|++..+.+.. +..+.. ....++||+|+||..++| |.++.++.++++|.+ ...
T Consensus 115 l~~~-------Gip~p~~~~~~~~~-~~~~~~~~~~~~~g~PvvvKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~ 183 (317)
T 4eg0_A 115 WQQT-------GVPTPPFETVMRGD-DYAARATDIVAKLGLPLFVKPASEGS---SVAVLKVKTADALPAALSEAATHDK 183 (317)
T ss_dssp HHHT-------TCCCCCEEEEETTS-CHHHHHHHHHHHHCSCEEEEECC--------CCEEECSGGGHHHHHHHHTTTCS
T ss_pred HHHC-------CcCCCCEEEEECch-hHHHHHHHHHHhcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhCCC
Confidence 9885 89999999986432 222211 114689999999998443 678999999998764 356
Q ss_pred CeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHH
Q 021495 193 PMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLE 270 (311)
Q Consensus 193 P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~ 270 (311)
++++||||++ |++|.|.|+|+++..+... ....++++|......+.. ...+++.+++ .+.++
T Consensus 184 ~~lvEe~i~~-G~E~~v~vl~~~~~~~~~i----------~~~~~~~~~~~k~~~g~~-----~~~~P~~l~~~~~~~l~ 247 (317)
T 4eg0_A 184 IVIVEKSIEG-GGEYTACIAGDLDLPLIKI----------VPAGEFYDYHAKYVANDT-----QYLIPCGLPAEQETELK 247 (317)
T ss_dssp EEEEEECCCS-SEEEEEEEETTCCCCCEEE----------EC---------------C-----EEESSCSSCHHHHHHHH
T ss_pred eEEEEcCCCC-CcEEEEEEECCcccceEEE----------eeCCceechhhcccCCCe-----eEEcCCCCCHHHHHHHH
Confidence 8999999975 9999999999975322111 111234444443221111 1111222332 46789
Q ss_pred HHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 271 RLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 271 ~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
++|.++.++||+. ++++|++++. +| ++||+|||..||+
T Consensus 248 ~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~vlEiN~~pg~ 286 (317)
T 4eg0_A 248 RIARRAFDVLGCTDWGRADFMLDA-AG-NAYFLEVNTAPGM 286 (317)
T ss_dssp HHHHHHHHTTTCCSEEEEEEEECT-TC-CEEEEEEESSCCC
T ss_pred HHHHHHHHHhCCCceEEEEEEEeC-CC-CEEEEEeeCCCCC
Confidence 9999999999997 8889999985 35 6999999999997
No 9
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.88 E-value=4.1e-22 Score=184.84 Aligned_cols=228 Identities=15% Similarity=0.174 Sum_probs=159.8
Q ss_pred HHHHHHHhCCCeEEEeeCCCC---CCCCCCccEEEEecCChhHH-HHHHHHHHhCCCeeeeCc-hhHHHHhcCHHHHHHH
Q 021495 47 KLEILARNKGISFVAIDQNRP---LSDQGPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQD 121 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~p---l~~qgp~DviLhK~t~~~~~-~~l~~y~~~hP~v~ViDp-~~ai~~l~dR~~~l~~ 121 (311)
.+.+.++++|++++.+|.+.. +.....+|+++..+.+.... ..++.+++. -+++++.| +++++.+.||..+.+.
T Consensus 26 ~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~~~~ge~~~~~~~le~-~gi~~~g~~~~~~~~~~dK~~~~~~ 104 (307)
T 3r5x_A 26 EMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKYGEDGTVQGTLES-LGIPYSGSNMLSSGICMDKNISKKI 104 (307)
T ss_dssp HHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEECCCSHHHHSSHHHHHHHH-HTCCBSSSCHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEeCCCCCCcHHHHHHHHHH-cCCCeeCcCHHHHHHHcCHHHHHHH
Confidence 467778889999999999843 23335789999887653211 123334433 47888866 9999999999999999
Q ss_pred HHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC-------CCCe
Q 021495 122 VADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPM 194 (311)
Q Consensus 122 l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~P~ 194 (311)
++++ +|++|++.++.+..+ .... ....++||+|+||..++ .|.++.++.+.++|.+. +.++
T Consensus 105 l~~~-------Gip~p~~~~~~~~~~-~~~~-~~~~~~~P~vvKP~~~~---~s~Gv~~v~~~~el~~~~~~~~~~~~~~ 172 (307)
T 3r5x_A 105 LRYE-------GIETPDWIELTKMED-LNFD-ELDKLGFPLVVKPNSGG---SSVGVKIVYDKDELISMLETVFEWDSEV 172 (307)
T ss_dssp HHHT-------TCCCCCEEEEESSSC-CCHH-HHHHHCSSEEEEECC-------CCCEEECSHHHHHHHHHHHHHHCSEE
T ss_pred HHHC-------CCCCCCEEEEeChhh-hhHH-HHHhcCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCCCE
Confidence 9885 899999999964332 2211 23457899999999844 36889999999887652 6799
Q ss_pred EEEecccCCCeEEEEEEECCEEEEE-EEecCCCCccccccccceeeeecccc-cccccCCCCCCCCCCCCCCC--hHHHH
Q 021495 195 LLQEFVNHGGILFKIYIIGETIKVV-RRFSLPNVSKRELAKVVSVFRFPRVS-SAAASADDADLDPGIAELPP--RPLLE 270 (311)
Q Consensus 195 vvQEfInH~G~~~KVyVVGd~v~~~-~R~Slpn~~~~~~~~~~~~~~~~~vs-~~~~~a~~~~~~p~~~~~p~--~~~~~ 270 (311)
++||||+ |+++.|.|+|+++..+ .+.. ..++|+|.... ..+... . | +.+++ .+.++
T Consensus 173 lvee~i~--G~e~~v~v~~g~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~----~-p--~~l~~~~~~~i~ 232 (307)
T 3r5x_A 173 VIEKYIK--GEEITCSIFDGKQLPIISIRH-----------AAEFFDYNAKYDDASTIE----E-V--IELPAELKERVN 232 (307)
T ss_dssp EEEECCC--SEEEEEEEETTEECCCEEEEE-----------EEEEETTEEEEEEEEEEE----E-E--CCCCHHHHHHHH
T ss_pred EEECCcC--CEEEEEEEECCEEeeEEEEEc-----------CCcccChhhcCCCCCCeE----e-c--CCCCHHHHHHHH
Confidence 9999996 8999999999987322 1111 11223332222 111110 0 1 12332 45689
Q ss_pred HHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 271 RLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 271 ~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
++|.++.++||+. ++++|+++++ | ++|++|||..||+
T Consensus 233 ~~a~~~~~~lg~~G~~~vD~~~~~--g-~~~vlEiN~rpg~ 270 (307)
T 3r5x_A 233 KASLACYKALKCSVYARVDMMVKD--G-IPYVMEVNTLPGM 270 (307)
T ss_dssp HHHHHHHHHTTCCSEEEEEEEEET--T-EEEEEEEESSCCC
T ss_pred HHHHHHHHHhCCCceEEEEEEEEC--C-eEEEEEEcCCCCC
Confidence 9999999999999 8899999983 4 7999999999996
No 10
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.87 E-value=9e-22 Score=187.01 Aligned_cols=228 Identities=16% Similarity=0.158 Sum_probs=156.7
Q ss_pred HHHHHHhCCCeEEEeeCCCCC--------------------------------------CCCCCccEEEEecCChhHH-H
Q 021495 48 LEILARNKGISFVAIDQNRPL--------------------------------------SDQGPFDVVLHKLSGMEWC-K 88 (311)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~pl--------------------------------------~~qgp~DviLhK~t~~~~~-~ 88 (311)
..+.+++.|+++++||.++.- ..+..+|+|+.-+.+.... .
T Consensus 27 v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~lhG~~gedg 106 (346)
T 3se7_A 27 VATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSPDRSVHGLLVLEQGKYETIRLDLVLPVLHGKLGEDG 106 (346)
T ss_dssp HHHHSCTTTEEEEEEEECTTSCEEEESCSSSSSSSSCCEEEEECCCTTTCEEEEEETTEEEEEECSEEEECCCSTTTTSS
T ss_pred HHHHhcccCCEEEEEEECCCCCEEeccchhhhhcccccccceeccCccCccceecccccccccCCCEEEEccCCCCCCCh
Confidence 456667789999999987642 0123578998877653211 2
Q ss_pred HHHHHHHhCCCeeeeCc-hhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeC
Q 021495 89 IIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPL 167 (311)
Q Consensus 89 ~l~~y~~~hP~v~ViDp-~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~ 167 (311)
.++.+++. .+++++.| +.++..++||..|.+.++++ +|++|++..+.+.... ....++||+|+||.
T Consensus 107 ~iq~~le~-~gip~~g~~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~-----~~~~lg~PvvvKP~ 173 (346)
T 3se7_A 107 AIQGLLEL-SGIPYVGCDIQSSALCMDKSLTYLVARSA-------GIATPNFWTVTADEKI-----PTDQLTYPVFVKPA 173 (346)
T ss_dssp HHHHHHHH-HCCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEEETTSCC-----CTTTCCSSEEEEES
T ss_pred HHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEcCcHHH-----HHHhcCCCEEEEeC
Confidence 34454443 47888775 89999999999999999885 8999999999643311 24578999999999
Q ss_pred cCCCCCcceeeEEEcCcccccc-------CCCCeEEEecccCCCeEEEEEEECCE----EEEEEEecCCCCccccccccc
Q 021495 168 VVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET----IKVVRRFSLPNVSKRELAKVV 236 (311)
Q Consensus 168 ~a~GS~~sh~m~lv~~~~~L~~-------l~~P~vvQEfInH~G~~~KVyVVGd~----v~~~~R~Slpn~~~~~~~~~~ 236 (311)
.++| |.++.++.++++|.+ .+.++++||||+ |+++.|.|+|+. +..+.+.. ...
T Consensus 174 ~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~E~~v~vl~~~~~~~~~~~~e~~----------~~~ 238 (346)
T 3se7_A 174 RSGS---SFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI--GTEIGCAVMGNGPELITGEVDQIT----------LSH 238 (346)
T ss_dssp SCCT---TTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEEETTEEEECCCEEEC----------CC-
T ss_pred CCCC---CcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC--CEEEEEEEEecCCCeEEEeeEEEe----------cCC
Confidence 8543 578999999988764 367899999996 999999999983 32222221 122
Q ss_pred eeeee----cccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 237 SVFRF----PRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 237 ~~~~~----~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL-~lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
++|+| ...+..+.. ...+++.+++ .+.++++|.++.++||+ .++++|++++.+ | ++|++|||..||
T Consensus 239 ~~~d~~q~~~~ky~~~~~-----~~~~pa~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~-g-~~~vlEiN~rPG 311 (346)
T 3se7_A 239 GFFKIHQESTPESGSDNS-----AVTVPADISTTSRSLVQDTAKAVYRALGCRGLSRVDLFLTED-G-KVVLNEVNTFPG 311 (346)
T ss_dssp -------------CGGGS-----CEESSCCCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTT-S-CEEEEEEESSCC
T ss_pred CCcCcccchhccccCCCe-----eEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEeCC-C-CEEEEEEeCCCC
Confidence 45666 443322111 1111233443 45789999999999999 577899999863 5 699999999999
Q ss_pred C
Q 021495 310 R 310 (311)
Q Consensus 310 ~ 310 (311)
|
T Consensus 312 ~ 312 (346)
T 3se7_A 312 M 312 (346)
T ss_dssp C
T ss_pred C
Confidence 7
No 11
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.87 E-value=4.9e-21 Score=176.55 Aligned_cols=232 Identities=18% Similarity=0.188 Sum_probs=159.1
Q ss_pred hHHHHHHHhCCCeEEEeeCCCCCCC---CCCccEEEEecCCh--hHHHHHHHHHHhCCCeeee-CchhHHHHhcCHHHHH
Q 021495 46 PKLEILARNKGISFVAIDQNRPLSD---QGPFDVVLHKLSGM--EWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSML 119 (311)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl~~---qgp~DviLhK~t~~--~~~~~l~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l 119 (311)
..+.+.++++|++++.+|.+..... ...+|+|+..+.+. +. ..++..++. -+++++ +++++++.+.||..+.
T Consensus 24 ~~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~e~-~~~~~~~e~-~g~~~~g~~~~~~~~~~dK~~~~ 101 (306)
T 1iow_A 24 AAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGED-GTLQGMLEL-MGLPYTGSGVMASALSMDKLRSK 101 (306)
T ss_dssp HHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEECCCSTTTSS-SHHHHHHHH-HTCCBSSCCHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEcCCCCCCcc-hHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHH
Confidence 3578899999999999998743222 24689998877321 10 112233333 278776 7899999999999999
Q ss_pred HHHHhccccCCCCccccCcEEEEccCCCCcch------hhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc----
Q 021495 120 QDVADLNLSDCNGKVRVPRQMVITKDSLSIPD------QVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE---- 189 (311)
Q Consensus 120 ~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~------~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~---- 189 (311)
+.++++ +|++|++..+.+. +..+ ......++||+|+||..++| |.++.++.+.++|.+
T Consensus 102 ~~l~~~-------gi~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~vvKP~~g~~---~~gv~~v~~~~el~~~~~~ 169 (306)
T 1iow_A 102 LLWQGA-------GLPVAPWVALTRA--EFEKGLSDKQLAEISALGLPVIVKPSREGS---SVGMSKVVAENALQDALRL 169 (306)
T ss_dssp HHHHHT-------TCCBCCEEEEEHH--HHHHCCCTHHHHHHHTTCSSEEEEETTCCT---TTTCEEESSGGGHHHHHHH
T ss_pred HHHHHC-------CCCCCCeEEEchh--hhhccchhhhhhHHhccCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHH
Confidence 999875 8999999988532 1111 00134689999999998443 578999999988764
Q ss_pred ---CCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC-
Q 021495 190 ---LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP- 265 (311)
Q Consensus 190 ---l~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~- 265 (311)
...++++||||+ |++++|.++|+++..+.+.... .++++|......+.. ....| +.+++
T Consensus 170 ~~~~~~~~lvee~i~--g~e~~v~~~~g~~~~~~~~~~~----------~~~~~~~~~~~~g~~---~~~~p--~~l~~~ 232 (306)
T 1iow_A 170 AFQHDEEVLIEKWLS--GPEFTVAILGEEILPSIRIQPS----------GTFYDYEAKFLSDET---QYFCP--AGLEAS 232 (306)
T ss_dssp HTTTCSEEEEEECCC--CCEEEEEEETTEECCCEEEECS----------SSSSCHHHHHTCSCC---EEESS--CCCCHH
T ss_pred HHhhCCCEEEEeCcC--CEEEEEEEECCCccceEEEEeC----------CCeEchhheecCCCe---eEEcC--CCCCHH
Confidence 257899999996 8999999999986433222111 112222211110000 00111 12222
Q ss_pred -hHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 266 -RPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 266 -~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
.+.++++|.++.++||+. ++++|++++. +| ++|++|||..||+
T Consensus 233 ~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~~iEiN~rpg~ 277 (306)
T 1iow_A 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDS-DG-QFYLLEANTSPGM 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHTCCSEEEEEEEECT-TS-CEEEEEEESSCCC
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEEEEEcC-CC-CEEEEEecCCCCC
Confidence 457889999999999997 8899999985 45 6899999999997
No 12
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.83 E-value=2.4e-20 Score=178.11 Aligned_cols=194 Identities=14% Similarity=0.179 Sum_probs=136.8
Q ss_pred HHHHHHhCCCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCc
Q 021495 90 IEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLV 168 (311)
Q Consensus 90 l~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~ 168 (311)
++.+++. -+++.+ -++.++..++||..+-+.++++ +|++|++..+..........-....++||+|+||..
T Consensus 115 ~q~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~ 186 (357)
T 4fu0_A 115 LQGIFEL-AGIPVVGCDTLSSALCMDKDRAHKLVSLA-------GISVPKSVTFKRFNEEAAMKEIEANLTYPLFIKPVR 186 (357)
T ss_dssp HHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCBCCCEEEEEGGGHHHHHHHHHHHCCSSEEEEETT
T ss_pred HHHHHHH-CCCcEECcCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEeecCCChHHHHHHHHHhcCCCEEEEECC
Confidence 5555554 478776 5689999999999999999875 899999998854221111111245799999999987
Q ss_pred CCCCCcceeeEEEcCcccccc-------CCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccccceeeee
Q 021495 169 VDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRF 241 (311)
Q Consensus 169 a~GS~~sh~m~lv~~~~~L~~-------l~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~ 241 (311)
++| |.+|.+|.++++|.+ .+.++++|+|| .|+.+-|.|+|+....+ .+- .+.....++|+|
T Consensus 187 gg~---s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i--~G~e~~v~vl~~~~~~~----~~v---~~~~~~~~~~d~ 254 (357)
T 4fu0_A 187 AGS---SFGITKVIEKQELDAAIELAFEHDTEVIVEETI--NGFEVGCAVLGIDELIV----GRV---DEIELSSGFFDY 254 (357)
T ss_dssp CSS---STTCEEESSHHHHHHHHHHHTTTCSEEEEEECC--CSEEEEEEEEESSSEEE----CCC---EEEEECHHHHTS
T ss_pred CCC---CCceEEeccHHhHHHHHHHHhccCCeEEEEEec--CCEEEEEEEEecCCceE----EEE---EEEEcccccccc
Confidence 433 688999999998865 36789999999 59999999999864322 111 111222345555
Q ss_pred cccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 242 PRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 242 ~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
......+... ...++.+++ .+.++++|.++.++||+. ++++|++++. +| ++||+|||..|||
T Consensus 255 ~~k~~~~~~~-----~~~pa~l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~~~~-dg-~~~vlEvNt~PG~ 319 (357)
T 4fu0_A 255 TEKYTLKSSK-----IYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTP-SG-EIVFNEVNTIPGF 319 (357)
T ss_dssp CSBCSSCCEE-----EESSCSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEESSCCC
T ss_pred cccccCCCce-----EecCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEeC-CC-CEEEEEEeCCCCC
Confidence 5544322110 011233443 467899999999999996 6679999985 45 7999999999997
No 13
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.82 E-value=1.8e-19 Score=173.71 Aligned_cols=212 Identities=9% Similarity=0.074 Sum_probs=136.7
Q ss_pred CccEEEEecCChhH-HHHHHHHHHhCCCeeeeC-chhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCc-
Q 021495 73 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSI- 149 (311)
Q Consensus 73 p~DviLhK~t~~~~-~~~l~~y~~~hP~v~ViD-p~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~- 149 (311)
.+|+++-=+.+..- -..++.+++. -+++++- ++.++..++||..|.+.++++ +|++|++..+.......
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 169 (372)
T 3tqt_A 98 SADCVFPMVHGTQGEDGALQGLLEL-LNLPYVGANVQSSAVCMEKDLTKTVLRAG-------GIPVVDWHTLSPRDATEG 169 (372)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCCCEEECTTSCCTT
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHHC-------CcCCCCEEEEechhhhhh
Confidence 57988765544210 1135555554 5788774 578999999999999999885 89999999996433211
Q ss_pred chhhHhcCCCCc-EEEeeCcCCCCCcceeeEEEcCcccccc-------CCCCeEEEecccCCCeEEEEEEECCEEEEEEE
Q 021495 150 PDQVFEAGLKLP-LVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKVVRR 221 (311)
Q Consensus 150 ~~~l~~~~l~fP-~VvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R 221 (311)
........++|| +|+||..++| |.++.+|.++++|.+ .+.++++||||+ |++|.|.|+|+... +
T Consensus 170 ~~~~~~~~lg~P~vvVKP~~ggs---s~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~---~ 241 (372)
T 3tqt_A 170 VYQRLLDRWGTSELFVKAVSLGS---SVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR--GREIECAVLGNGAP---K 241 (372)
T ss_dssp HHHHHHHHC---CEEEEESSCCS---GGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--SEEEEEEEEESSSC---E
T ss_pred HHHHHHHhcCCCeEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC--CEEEEEEEEeCCCc---e
Confidence 001124578999 9999998433 688999999988764 367899999996 89999999998721 0
Q ss_pred ecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCe
Q 021495 222 FSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLR-LFNIDMIREHGMRDV 298 (311)
Q Consensus 222 ~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~ 298 (311)
. ++- .++....++|+|...+..+.. ....+++.+++ .+.++++|.++.++||+. ++++|++++. +| +
T Consensus 242 ~-~~~---~ei~~~~~~~d~~~ky~~g~~----~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-dg-~ 311 (372)
T 3tqt_A 242 A-SLP---GEIIPHHDYYSYDAKYLDPNG----ATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTP-NN-K 311 (372)
T ss_dssp E-CCC---EEEECC-------------------CEEESCCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-C
T ss_pred E-eee---EEEecCCCccchhhcccCCCc----eEEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEeC-CC-c
Confidence 1 111 122222356777655432210 01111233443 467999999999999998 6679999985 35 6
Q ss_pred EEEEEecCCCCC
Q 021495 299 FYVIDINYFPGR 310 (311)
Q Consensus 299 ~~ViDVNyfPG~ 310 (311)
+|++|||..|||
T Consensus 312 ~~vlEINt~PG~ 323 (372)
T 3tqt_A 312 VLVNEINTIPGF 323 (372)
T ss_dssp EEEEEEESSCCC
T ss_pred EEEEEEECCCCc
Confidence 999999999997
No 14
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.82 E-value=1.2e-19 Score=175.63 Aligned_cols=257 Identities=15% Similarity=0.120 Sum_probs=160.7
Q ss_pred ccEEEEEEe---Cchhhhccchh-HHHHHHHhCCCeEEEeeCCCC------------C------CCC-------------
Q 021495 27 ERLVVGYAL---TSKKKKSFLQP-KLEILARNKGISFVAIDQNRP------------L------SDQ------------- 71 (311)
Q Consensus 27 ~~~~Vgy~~---~~kK~~~~~~~-~l~~~~~~~gi~~v~iD~~~p------------l------~~q------------- 71 (311)
.+.+|+..+ |.-+.=|+..- ...+.+++.|++.++||.++. + ...
T Consensus 36 ~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (383)
T 3k3p_A 36 SKETLVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKIKPSD 115 (383)
T ss_dssp -CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEECGGG
T ss_pred cCCeEEEEeCCCCCcchHHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEecccccccccccccccccccccccccccccc
Confidence 344677765 33344344443 245666788999999998753 0 000
Q ss_pred --CCccEEEEecCChhH-HHHHHHHHHhCCCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCc-cccCcEEEEccCC
Q 021495 72 --GPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGK-VRVPRQMVITKDS 146 (311)
Q Consensus 72 --gp~DviLhK~t~~~~-~~~l~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~-i~~P~~~~i~~~~ 146 (311)
..+|+++-=+.+..- -..++.+++. -+++++ .++.++..++||..|.+.++++ + |++|++..+....
T Consensus 116 ~~~~~D~vf~~lhG~~GEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~~-------G~Ipvp~~~~~~~~~ 187 (383)
T 3k3p_A 116 IYEEEAVVFPVLHGPMGEDGSIQGFLEV-LKMPYVGTNILSSSVAMDKITTNQVLESA-------TTIPQVAYVALIEGE 187 (383)
T ss_dssp GCCTTCEEEEECCSTTTSSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHHH-------CCCCBCCEEEEETTS
T ss_pred cccCCCEEEEcCCCCCcchHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHhC-------CCcCCCCEEEEeCcc
Confidence 146888765544210 0134555544 478876 5689999999999999999885 7 9999999996432
Q ss_pred CC-cchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-------CCCCeEEEecccCCCeEEEEEEECCEEEE
Q 021495 147 LS-IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKV 218 (311)
Q Consensus 147 ~~-~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~P~vvQEfInH~G~~~KVyVVGd~v~~ 218 (311)
.. .........++||+|+||..++| |.++.+|.++++|.+ .+.++++||||+ |++|.|.|+|+....
T Consensus 188 ~~~~~~~~~~~~lg~PvvVKP~~ggs---s~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~--G~E~~v~vl~d~~~~ 262 (383)
T 3k3p_A 188 PLESKLAEVEEKLIYPVFVKPANMGS---SVGISKAENRTDLKQAIALALKYDSRVLIEQGVD--AREIEVGILGNTDVK 262 (383)
T ss_dssp CHHHHHHHHHHHCCSSEEEEECC---------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSCE
T ss_pred chhHHHHHHHHhcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC--CeEEEEEEEeCCCee
Confidence 11 00011235789999999988443 688999999988864 267899999996 999999999985311
Q ss_pred EEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCc-EeEEEEEEeCCC
Q 021495 219 VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLR-LFNIDMIREHGM 295 (311)
Q Consensus 219 ~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~t 295 (311)
+ +.+ .++....++|+|...+..+.. ...+++.+++ .+.++++|.++.++||+. ++++|++++. +
T Consensus 263 ~---~~~----~ei~~~~~~~d~~~ky~~g~~-----~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~-~ 329 (383)
T 3k3p_A 263 T---TLP----GEIVKDVAFYDYEAKYIDNKI-----TMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-D 329 (383)
T ss_dssp E---CCC----EEEC----------------------CEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-T
T ss_pred E---Eee----EEEecCCCccchhhcccCCCe-----eEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEEC-C
Confidence 1 111 122223456777765542211 1112233443 467899999999999998 7779999985 3
Q ss_pred CCeEEEEEecCCCCC
Q 021495 296 RDVFYVIDINYFPGR 310 (311)
Q Consensus 296 g~~~~ViDVNyfPG~ 310 (311)
| ++||+|||..|||
T Consensus 330 g-~~~vlEINtrPG~ 343 (383)
T 3k3p_A 330 G-KVYLNELNTMPGF 343 (383)
T ss_dssp C-CEEEEEEESSCCC
T ss_pred C-CEEEEEeeCCCCC
Confidence 5 6999999999996
No 15
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.82 E-value=4.3e-19 Score=170.76 Aligned_cols=214 Identities=17% Similarity=0.173 Sum_probs=143.7
Q ss_pred CCccEEEEecCChhH-HHHHHHHHHhCCCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCC--
Q 021495 72 GPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL-- 147 (311)
Q Consensus 72 gp~DviLhK~t~~~~-~~~l~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~-- 147 (311)
..+|+|+--+.+..- ...++..++. -+++++ .++.++..+.||..|.+.++++ +|++|++..+.+..+
T Consensus 92 ~~~D~v~~~~~g~~gedg~~~~lle~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~ 163 (377)
T 1ehi_A 92 GDFDIFFPVVHGNLGEDGTLQGLFKL-LDKPYVGAPLRGHAVSFDKALTKELLTVN-------GIRNTKYIVVDPESANN 163 (377)
T ss_dssp CCCSEEEEECCSTTTSSSHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHTT-------TCCCCCEEEECTTGGGG
T ss_pred cCCCEEEEecCCCCCcCHHHHHHHHH-cCCCEeCcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCEEEEeccccch
Confidence 368999877644210 0124444433 478888 8999999999999999999874 899999999854321
Q ss_pred CcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-------CCCCeEEEecccCCC-eEEEEEEECCE---E
Q 021495 148 SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGG-ILFKIYIIGET---I 216 (311)
Q Consensus 148 ~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~P~vvQEfInH~G-~~~KVyVVGd~---v 216 (311)
..... ....++||+|+||..++| |.++.+|.++++|.. .+.++++||||+ | +++.|.|+|+. +
T Consensus 164 ~~~~~-~~~~~g~PvvVKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~vl~~~~~~~ 237 (377)
T 1ehi_A 164 WSWDK-IVAELGNIVFVKAANQGS---SVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN--GARELEVGVIGNDQPLV 237 (377)
T ss_dssp CCHHH-HHHHHCSCEEEEESSCCT---TTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--CSCEEEEEEEESSSCEE
T ss_pred HHHHH-HHHhcCCCEEEEeCCCCC---CcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC--CCceEEEEEEcCCCcEE
Confidence 01111 123578999999998543 578999999988764 357899999995 7 99999999984 4
Q ss_pred EEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCc-EeEEEEEEeC
Q 021495 217 KVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLR-LFNIDMIREH 293 (311)
Q Consensus 217 ~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~ 293 (311)
....+.-..... ...++|+|......+. .....+++.+++ .+.++++|.++.++||+. ++++|++++.
T Consensus 238 ~~~~ei~~~~~~-----~~~~~~d~~~k~~~g~----~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 308 (377)
T 1ehi_A 238 SEIGAHTVPNQG-----SGDGWYDYNNKFVDNS----AVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDE 308 (377)
T ss_dssp EEEEEEECTTSS-----SSSCCCCHHHHTTCCT----TCEEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred EeeEEEEecCCC-----CcCceeCHHhcccCCC----CeeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEeC
Confidence 433222111000 0123455544332110 000011223333 467899999999999998 7789999975
Q ss_pred CCCCeEEEEEecCCCCC
Q 021495 294 GMRDVFYVIDINYFPGR 310 (311)
Q Consensus 294 ~tg~~~~ViDVNyfPG~ 310 (311)
+| ++||+|||..||+
T Consensus 309 -~g-~~~vlEiN~rpg~ 323 (377)
T 1ehi_A 309 -NN-VPYLGEPNTLPGF 323 (377)
T ss_dssp -TC-CEEEEEEESSCCC
T ss_pred -CC-CEEEEEEeCCCCC
Confidence 35 6899999999996
No 16
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.82 E-value=2.1e-19 Score=171.68 Aligned_cols=208 Identities=16% Similarity=0.176 Sum_probs=136.7
Q ss_pred CCccEEEEecCC---hhHHHHHHHHHHhCCCeeeeCc-hhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCC
Q 021495 72 GPFDVVLHKLSG---MEWCKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL 147 (311)
Q Consensus 72 gp~DviLhK~t~---~~~~~~l~~y~~~hP~v~ViDp-~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~ 147 (311)
..+|+|+--+.+ +. ..++..++. -+++++.| +.++..+.||..|.+.|+++ +|++|++..+.....
T Consensus 86 ~~~D~v~~~~~g~~~ed--~~~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~ 155 (364)
T 2i87_A 86 QPYDAVFPLLHGPNGED--GTIQGLFEV-LDVPYVGNGVLSAASSMDKLVMKQLFEHR-------GLPQLPYISFLRSEY 155 (364)
T ss_dssp SBCSEEEEECCCSSSCT--THHHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEEEEHHHH
T ss_pred cCCCEEEEeCCCCCCcC--HHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhh
Confidence 367988866532 21 123333332 37888866 89999999999999999885 799999998853210
Q ss_pred ------CcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-------CCCCeEEEecccCCCeEEEEEEECC
Q 021495 148 ------SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGE 214 (311)
Q Consensus 148 ------~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~P~vvQEfInH~G~~~KVyVVGd 214 (311)
.+.+ ....++||+|+||..++| |.++.+|.++++|.. .+.++++||||+ |+++.|.|+|+
T Consensus 156 ~~~~~~~~~~--~~~~~g~PvvvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~ 228 (364)
T 2i87_A 156 EKYEHNILKL--VNDKLNYPVFVKPANLGS---SVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN--AREIEVAVLGN 228 (364)
T ss_dssp HHHHHHHHHH--HHHHCCSSEEEEESSCSS---CTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC--CEEEEEEEEES
T ss_pred cccchhHHHH--HHHhcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc--CeEEEEEEEcC
Confidence 0111 124689999999998554 578999999988764 267899999996 89999999998
Q ss_pred EEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCc-EeEEEEEE
Q 021495 215 TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLR-LFNIDMIR 291 (311)
Q Consensus 215 ~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~ 291 (311)
.-. +. ++. ++.....++|+|......+.. .... ++.+++ .+.++++|.++.++||+. ++++|+++
T Consensus 229 ~~~---~~-~~~---~e~~~~~~~~~~~~k~~~g~~---~~~~--pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~ 296 (364)
T 2i87_A 229 DYP---EA-TWP---GEVVKDVAFYDYKSKYKDGKV---QLQI--PADLDEDVQLTLRNMALEAFKATDCSGLVRADFFV 296 (364)
T ss_dssp SSC---EE-CCC---EEECCSCCC-----------C---CEES--SCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CCc---EE-eee---EEEecCCCcCCHHHcccCCCe---eEEe--CCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence 510 00 111 111111234555443321111 0111 222333 457899999999999995 78899999
Q ss_pred eCCCCCeEEEEEecCCCCC
Q 021495 292 EHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 292 ~~~tg~~~~ViDVNyfPG~ 310 (311)
+. +| ++||+|||..||+
T Consensus 297 ~~-~g-~~~viEiN~rpg~ 313 (364)
T 2i87_A 297 TE-DN-QIYINETNAMPGF 313 (364)
T ss_dssp CT-TC-CEEEEEEESSCCC
T ss_pred ec-CC-CEEEEEEeCCCCC
Confidence 75 35 6999999999996
No 17
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.81 E-value=3.1e-19 Score=169.03 Aligned_cols=192 Identities=16% Similarity=0.213 Sum_probs=132.5
Q ss_pred HHHHHHhCCCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCc
Q 021495 90 IEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLV 168 (311)
Q Consensus 90 l~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~ 168 (311)
++..++. -+++++ .++.++..+.||..|.+.++++ +|++|++..+.+..+ .. ...++||+|+||..
T Consensus 108 ~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~-~~----~~~~~~PvvvKP~~ 174 (343)
T 1e4e_A 108 IQGLFEL-SGIPFVGCDIQSSAICMDKSLTYIVAKNA-------GIATPAFWVINKDDR-PV----AATFTYPVFVKPAR 174 (343)
T ss_dssp HHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEECTTCC-CC----GGGSCSCEEEEESS
T ss_pred HHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHC-------CCCcCCEEEEechhh-hh----hhccCCCEEEEeCC
Confidence 3444433 478877 5689999999999999999885 899999999864322 21 15689999999998
Q ss_pred CCCCCcceeeEEEcCcccccc-------CCCCeEEEecccCCCeEEEEEEECCE--EEEEEEecCCCCccccccccceee
Q 021495 169 VDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET--IKVVRRFSLPNVSKRELAKVVSVF 239 (311)
Q Consensus 169 a~GS~~sh~m~lv~~~~~L~~-------l~~P~vvQEfInH~G~~~KVyVVGd~--v~~~~R~Slpn~~~~~~~~~~~~~ 239 (311)
++| |.++.+|.++++|.. .+.++++||||+ |++|.|.|+|+. +.+ ++. .+.....++|
T Consensus 175 ~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~~~~~~-----~~~---~ei~~~~~~~ 241 (343)
T 1e4e_A 175 SGS---SFGVKKVNSADELDYAIESARQYDSKILIEQAVS--GCEVGCAVLGNSAALVV-----GEV---DQIRLQYGIF 241 (343)
T ss_dssp CCT---TTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC--SEEEEEEEEEETTCCEE-----CCC---EEEEESSSCC
T ss_pred CCC---CCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC--CeEEEEEEEeCCCCeEE-----eee---EEEeeCCCcc
Confidence 554 567999999988764 357899999995 899999999875 111 111 0111112345
Q ss_pred eecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 240 RFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 240 ~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
+|.......+ ..+......++.+++ .+.++++|.++.++||+. ++++|++++. +| ++||+|||..||+
T Consensus 242 ~~~~k~~~~~-~~g~~~~~~p~~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~-~g-~~~viEiN~rpg~ 312 (343)
T 1e4e_A 242 RIHQEVEPEK-GSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQD-NG-RIVLNEVNTLPGF 312 (343)
T ss_dssp CGGGSSSGGG-CCSSEEECSSCSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECT-TC-CEEEEEEESSCCC
T ss_pred CHhhcccccC-CCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC-CC-CEEEEEeeCCCCC
Confidence 5544332100 001111111223332 467999999999999996 7889999975 45 6899999999997
No 18
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.80 E-value=4.7e-19 Score=171.46 Aligned_cols=259 Identities=12% Similarity=0.137 Sum_probs=163.1
Q ss_pred CCCccEEEEEEe---Cchhhhccchh-HHHHHHHhCCCeEEEeeCCCCC-------------------------------
Q 021495 24 LQPERLVVGYAL---TSKKKKSFLQP-KLEILARNKGISFVAIDQNRPL------------------------------- 68 (311)
Q Consensus 24 ~~~~~~~Vgy~~---~~kK~~~~~~~-~l~~~~~~~gi~~v~iD~~~pl------------------------------- 68 (311)
..+.+.+|+..+ |.-+.=|+..- ...+.+++.|+++++||+++.-
T Consensus 18 ~~m~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (386)
T 3e5n_A 18 GHMRKIRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVAL 97 (386)
T ss_dssp ---CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCEEE
T ss_pred hhcCCceEEEEeccCCCCchhHHHHHHHHHHHhCccCCEEEEEEECCCCCEEecccchhhccccccccccccccccceee
Confidence 445566777755 33344444443 2456667789999999976531
Q ss_pred ---------------CCCCCccEEEEecCChhHH-HHHHHHHHhCCCeeee-CchhHHHHhcCHHHHHHHHHhccccCCC
Q 021495 69 ---------------SDQGPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCN 131 (311)
Q Consensus 69 ---------------~~qgp~DviLhK~t~~~~~-~~l~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~ 131 (311)
.....+|+|+-=+.+..-. ..++..++. -+++++ .++.++..++||..|.+.++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~~------ 170 (386)
T 3e5n_A 98 LPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRM-ANLPFVGSGVLGSAVAMDKDMAKRVLRDA------ 170 (386)
T ss_dssp CTTCSSSCEEECC--CCCCCCSEEEEEECSHHHHSSHHHHHHHH-TTCCBSSCCHHHHHHHHBHHHHHHHHHHT------
T ss_pred ccCccccceeccccccccCCCCEEEEcCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHC------
Confidence 0122468776555442111 135555544 478776 5679999999999999999885
Q ss_pred CccccCcEEEEccCC---CCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-------CCCCeEEEeccc
Q 021495 132 GKVRVPRQMVITKDS---LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVN 201 (311)
Q Consensus 132 ~~i~~P~~~~i~~~~---~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~P~vvQEfIn 201 (311)
+|++|++..+.... ....+ ....++||+|+||..++| |.++.+|.++++|.+ .+.++++||||+
T Consensus 171 -GIp~p~~~~~~~~~~~~~~~~~--~~~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~ 244 (386)
T 3e5n_A 171 -RLAVAPFVCFDRHTAAHADVDT--LIAQLGLPLFVKPANQGS---SVGVSQVRTADAFAAALALALAYDHKVLVEAAVA 244 (386)
T ss_dssp -TCCBCCEEEEEHHHHTTCCHHH--HHHHHCSSEEEEESBSCS---STTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC
T ss_pred -CCCCCCEEEEeCcccchhhHHH--HHHhcCCCEEEEECCCCc---CCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 89999999985422 11111 234688999999998554 578999999998864 256899999996
Q ss_pred CCCeEEEEEEECCEEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHH
Q 021495 202 HGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHR 279 (311)
Q Consensus 202 H~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~ 279 (311)
|+++.|.|+|+....+. ..+++....++|+|......+.. ....+++.+++ .+.++++|.++.++
T Consensus 245 --G~E~~v~vl~~~~~~~~-------~~gei~~~~~~~d~~~ky~~~~~----~~~~~Pa~l~~~~~~~i~~~a~~~~~a 311 (386)
T 3e5n_A 245 --GREIECAVLGNAVPHAS-------VCGEVVVHDAFYSYATKYISEHG----AEIVIPADIDAQTQQRIQQIAVQAYQA 311 (386)
T ss_dssp --SEEEEEEEECSSSCEEE-------EEEEECC---------------------CEESSCSSCHHHHHHHHHHHHHHHHH
T ss_pred --CeEEEEEEEeCCCceEE-------EeEEEEeCCcccchhcccCCCCC----eEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 89999999998641110 00111111235666554332110 01111233333 45789999999999
Q ss_pred hCCc-EeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 280 LGLR-LFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 280 LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
||+. ++++|++++. +| ++|++|||..|||
T Consensus 312 Lg~~G~~~vDf~~~~-dg-~~~vlEiN~~PG~ 341 (386)
T 3e5n_A 312 LGCAGMARVDVFLCA-DG-RIVINEVNTLPGF 341 (386)
T ss_dssp HTCCSEEEEEEEECT-TC-CEEEEEEESSCCC
T ss_pred hCCccEEEEEEEEEC-CC-cEEEEEeECCCCC
Confidence 9998 7779999985 35 6999999999997
No 19
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.80 E-value=1.6e-18 Score=163.09 Aligned_cols=202 Identities=15% Similarity=0.168 Sum_probs=141.8
Q ss_pred CCCccEEEEecCChhH-HHHHHHHHHhCCCeeeeCc-hhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCC
Q 021495 71 QGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS 148 (311)
Q Consensus 71 qgp~DviLhK~t~~~~-~~~l~~y~~~hP~v~ViDp-~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~ 148 (311)
...+|+|+--+.+..- -..++..++. -+++++.| +.++..+.||..+.+.++++ +|++|++..+.+..+.
T Consensus 74 ~~~~D~v~~~~hg~~gedg~i~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~ 145 (322)
T 2fb9_A 74 WERYDVVFPLLHGRFGEDGTVQGFLEL-LGKPYVGAGVAASALCMDKDLSKRVLAQA-------GVPVVPWVAVRKGEPP 145 (322)
T ss_dssp CTTCSEEEEECCSTTTTSSHHHHHHHH-HTCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEEETTSCC
T ss_pred ccCCCEEEEeCCCCCCccHHHHHHHHH-cCCCeeCcCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEECchhh
Confidence 3468999877644210 0123333333 47888855 99999999999999999875 8999999998643321
Q ss_pred cchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-------CCCCeEEEecccCCC-eEEEEEEECCE---EE
Q 021495 149 IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGG-ILFKIYIIGET---IK 217 (311)
Q Consensus 149 ~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~P~vvQEfInH~G-~~~KVyVVGd~---v~ 217 (311)
. . .++||+|+||..++| |.++.++.++++|.+ .+.++++||||+ | +++.|.|+|++ +.
T Consensus 146 --~---~-~~g~PvvvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~vl~~~~~~~~ 214 (322)
T 2fb9_A 146 --V---V-PFDPPFFVKPANTGS---SVGISRVERFQDLEAALALAFRYDEKAVVEKALS--PVRELEVGVLGNVFGEAS 214 (322)
T ss_dssp --C---C-CSCSCEEEEETTCCT---TTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS--SCEEEEEEEESSSSCEEE
T ss_pred --h---h-ccCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC--CCeeEEEEEEeCCCceEe
Confidence 1 1 689999999998544 578999999988764 257899999995 7 99999999985 32
Q ss_pred EE-EEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCC-cEeEEEEEEeC
Q 021495 218 VV-RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGL-RLFNIDMIREH 293 (311)
Q Consensus 218 ~~-~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL-~lfG~Dvi~~~ 293 (311)
.. .+.. ..++|+|......+.. ....| +.+++ .+.++++|.++.++||+ .++++|++++
T Consensus 215 ~~~ei~~-----------~~~~~~~~~k~~~g~~---~~~~P--a~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~- 277 (322)
T 2fb9_A 215 PVGEVRY-----------EAPFYDYETKYTPGRA---ELLIP--APLDPGTQETVQELALKAYKVLGVRGMARVDFFLA- 277 (322)
T ss_dssp EEEEEEE-----------ECCEEETTTEEECCEE---EEESS--CCCCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEEE-
T ss_pred eeEEEee-----------CCCccCHHHcccCCCe---EEEeC--CCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEE-
Confidence 22 2211 1134555443322111 00112 23333 56899999999999999 7889999998
Q ss_pred CCCCeEEEEEecCCCCC
Q 021495 294 GMRDVFYVIDINYFPGR 310 (311)
Q Consensus 294 ~tg~~~~ViDVNyfPG~ 310 (311)
+| ++||+|||..||+
T Consensus 278 -~g-~~~vlEiN~rpg~ 292 (322)
T 2fb9_A 278 -EG-ELYLNELNTIPGF 292 (322)
T ss_dssp -TT-EEEEEEEESSCCC
T ss_pred -CC-cEEEEEEECCCCC
Confidence 35 7999999999997
No 20
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.79 E-value=7.8e-19 Score=182.99 Aligned_cols=230 Identities=15% Similarity=0.176 Sum_probs=153.6
Q ss_pred hHHHHHHHhCCCeEEEeeCCCCCCCCC---CccEEEEecCChhHHHHHHHHHHhCCCeeeeCchhHHHHhcCHHHHHHHH
Q 021495 46 PKLEILARNKGISFVAIDQNRPLSDQG---PFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDV 122 (311)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl~~qg---p~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l 122 (311)
+.+++.|+++|++++.||.+.++...+ .+|++.. ..+.-.++..++..+.||..+.+.|
T Consensus 431 ~~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~------------------g~itg~~~~~a~~~~~DK~~tk~lL 492 (750)
T 3ln6_A 431 QLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKN------------------GNMTSKDNYIVPLAMANKVVTKKIL 492 (750)
T ss_dssp HHHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEET------------------TTBCTTSCTHHHHHTTTSHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEec------------------CCeeCCCHHHHHHHHhCHHHHHHHH
Confidence 458999999999999999987655322 2333321 1345567788899989999999999
Q ss_pred HhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEc---Ccccccc-------CCC
Q 021495 123 ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY---DRFSLSE-------LEP 192 (311)
Q Consensus 123 ~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~---~~~~L~~-------l~~ 192 (311)
++. +|++|++.++.+.. +..+. ....++||+|+||.. |+ .|.+|.++. +.+++.+ ...
T Consensus 493 ~~~-------GIPvP~~~~~~~~~-ea~~~-~~~~~g~PvVVKP~~--G~-~G~GV~iv~~~~s~eel~~a~~~~~~~~~ 560 (750)
T 3ln6_A 493 DEK-------HFPTPFGDEFTDRK-EALNY-FSQIQDKPIVVKPKS--TN-FGLGISIFKTSANLASYEKAIDIAFTEDS 560 (750)
T ss_dssp HHT-------TCCCCCCCCEETTT-THHHH-HHHSSSSCEEEEETT--CC-SSSSCEEESSCCCHHHHHHHHHHHHHHCS
T ss_pred HHC-------CcCCCCEEEECCHH-HHHHH-HHHhcCCcEEEEeCC--CC-CCCCEEEEeCCCCHHHHHHHHHHHHhhCC
Confidence 885 89999999886432 22221 225689999999987 44 367899998 6776653 267
Q ss_pred CeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccc--------cccee--------------------------
Q 021495 193 PMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELA--------KVVSV-------------------------- 238 (311)
Q Consensus 193 P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~--------~~~~~-------------------------- 238 (311)
++++||||+ |++|+|+|+||++..+.++-.+++..+... .|..+
T Consensus 561 ~vlVEefI~--G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~ 638 (750)
T 3ln6_A 561 AILVEEYIE--GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQ 638 (750)
T ss_dssp EEEEEECCC--SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHT
T ss_pred cEEEEeccC--CCEEEEEEECCEEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHHHc
Confidence 899999996 899999999999997654433432111000 00000
Q ss_pred -eeecccccc---------cccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeC-------CCCCeEEE
Q 021495 239 -FRFPRVSSA---------AASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREH-------GMRDVFYV 301 (311)
Q Consensus 239 -~~~~~vs~~---------~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~-------~tg~~~~V 301 (311)
++.+++-.. ++.+.++...... -...+.++++|.++.+++|+.+.|||+++++ ..| .++|
T Consensus 639 g~~~~~V~~~Ge~v~L~~~~Nls~Gg~~~d~t--d~i~p~~~~~a~~aa~~igl~~~GvDli~~di~~~~~~~~~-~~~i 715 (750)
T 3ln6_A 639 GYTVNSIPPEGTKIELRRNSNISTGGDSIDVT--NTMDPTYKQLAAEMAEAMGAWVCGVDLIIPNATQAYSKDKK-NATC 715 (750)
T ss_dssp TCCSSCCCCTTCEEESCSSCCTTTTCEEEECT--TTSCHHHHHHHHHHHHHHTCSSCEEEEEESCSSSCCCTTTT-CCEE
T ss_pred CCCccccCCCCCEEEEeecccccCCCceeecc--ccCCHHHHHHHHHHHHHhCCCeEEEEEEecCccccccccCC-CeEE
Confidence 111111100 0111111111110 0125678999999999999999999999975 123 5799
Q ss_pred EEecCCCCC
Q 021495 302 IDINYFPGR 310 (311)
Q Consensus 302 iDVNyfPG~ 310 (311)
||||.-||+
T Consensus 716 iEvN~~pg~ 724 (750)
T 3ln6_A 716 IELNFNPLM 724 (750)
T ss_dssp EEEESSCCC
T ss_pred EEEcCCcch
Confidence 999999997
No 21
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.79 E-value=1e-18 Score=167.34 Aligned_cols=205 Identities=13% Similarity=0.203 Sum_probs=140.5
Q ss_pred CccEEEEecCC---hhHHHHHHHHHHhCCCeeeeCc-hhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCC--
Q 021495 73 PFDVVLHKLSG---MEWCKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS-- 146 (311)
Q Consensus 73 p~DviLhK~t~---~~~~~~l~~y~~~hP~v~ViDp-~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~-- 146 (311)
.+|+|+-=+.+ ++ ..++.+++. -+++++.| +.++..++||..|.+.++++ +|++|++..+.+..
T Consensus 98 ~~D~vf~~lhG~~gEd--g~iq~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~ 167 (364)
T 3i12_A 98 TVDVIFPIVHGTLGED--GSLQGMLRV-ANLPFVGSDVLSSAACMDKDVAKRLLRDA-------GLNIAPFITLTRTNRH 167 (364)
T ss_dssp CCSEEEECCCSTTTTS--SHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEEETTTGG
T ss_pred CCCEEEEeCCCCCCcC--HHHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHHC-------CCCCCCEEEEEccccc
Confidence 57887654433 22 135555544 47888765 79999999999999999885 89999999996432
Q ss_pred C-CcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-------CCCCeEEEecccCCCeEEEEEEECCEE--
Q 021495 147 L-SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETI-- 216 (311)
Q Consensus 147 ~-~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~P~vvQEfInH~G~~~KVyVVGd~v-- 216 (311)
. ...+ ....++||+|+||..++| |.++.+|.++++|.+ .+.++++||||+ |++|.|.|+|+..
T Consensus 168 ~~~~~~--~~~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~ 240 (364)
T 3i12_A 168 AFSFAE--VESRLGLPLFVKPANQGS---SVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK--GREIECAVLGNDNPQ 240 (364)
T ss_dssp GCCHHH--HHHHHCSSEEEEETTCCT---TTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSCE
T ss_pred hhhHHH--HHHhcCCCEEEEECCCCC---CcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC--CeEEEEEEEeCCCce
Confidence 0 2212 234678999999997443 578999999988864 267899999995 7999999998862
Q ss_pred -EEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCc-EeEEEEEEe
Q 021495 217 -KVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLR-LFNIDMIRE 292 (311)
Q Consensus 217 -~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~~ 292 (311)
.... ++....++|+|...+..+.. ....+++.+++ .+.++++|.++.++||+. ++++|++++
T Consensus 241 ~~~~~----------ei~~~~~~~~~~~ky~~~~~----~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~ 306 (364)
T 3i12_A 241 ASTCG----------EIVLNSEFYAYDTKYIDDNG----AQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLT 306 (364)
T ss_dssp EEEEE----------EEECCTTCC--TTTTSGGGG----CEEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred EeeeE----------EEecCCCccCHHHcccCCCc----eEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEe
Confidence 1111 11111235566554432110 00111223333 457899999999999996 667999998
Q ss_pred CCCCCeEEEEEecCCCCC
Q 021495 293 HGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 293 ~~tg~~~~ViDVNyfPG~ 310 (311)
. +| ++|++|||..||+
T Consensus 307 ~-~g-~~~vlEiN~~Pg~ 322 (364)
T 3i12_A 307 A-DN-EVVINEINTLPGF 322 (364)
T ss_dssp T-TC-CEEEEEEESSCCC
T ss_pred c-CC-CEEEEEeeCCCCC
Confidence 5 35 6999999999997
No 22
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.76 E-value=2.7e-18 Score=165.37 Aligned_cols=209 Identities=16% Similarity=0.105 Sum_probs=142.5
Q ss_pred CccEEEEec---CChhHHHHHHHHHHhCCCeeeeCc-hhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCC
Q 021495 73 PFDVVLHKL---SGMEWCKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS 148 (311)
Q Consensus 73 p~DviLhK~---t~~~~~~~l~~y~~~hP~v~ViDp-~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~ 148 (311)
.+|+|+-=+ .+++ ..++.+++. -+++++.| +.++..++||..|.+.++++ +|++|++..+......
T Consensus 109 ~~D~vfp~lhG~~gEd--g~iq~lle~-~gip~vG~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~ 178 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGED--GTIQGLLEL-AGVPYVGAGVLASAVGMDKEFTKKLLAAD-------GLPVGAYAVLRPPRST 178 (373)
T ss_dssp TCSEEEECCEETTEEC--CHHHHHHHH-HTCCBSSSCHHHHHHHHBHHHHHHHHHHT-------TCCBCCEEEECTTCCC
T ss_pred CccEEEECCCCCCCcc--HHHHHHHHH-cCCCccCCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCEEEEECcccc
Confidence 478886444 4332 123444433 37888876 89999999999999999885 8999999999644321
Q ss_pred cchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-------CCCCeEEEecccCCCeEEEEEEECCEEEEEEE
Q 021495 149 IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKVVRR 221 (311)
Q Consensus 149 ~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R 221 (311)
... .....++||+|+||..++| |.++.+|.++++|.+ .+.++++||||+ |++|.|.|+|+.-..+ +
T Consensus 179 ~~~-~~~~~lg~PvvVKP~~ggs---s~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~-~ 251 (373)
T 3lwb_A 179 LHR-QECERLGLPVFVKPARGGS---SIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS--GRELECGVLEMPDGTL-E 251 (373)
T ss_dssp CCH-HHHHHHCSCEEEEESBCST---TTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE--EEEEEEEEEECTTSCE-E
T ss_pred hhH-HHHHhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC--CeEEEEEEEECCCCce-E
Confidence 111 1245689999999998554 578999999998864 367899999996 8999999999852100 0
Q ss_pred ecCCCCcccccccc--ce----eeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCc-EeEEEEEEe
Q 021495 222 FSLPNVSKRELAKV--VS----VFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLR-LFNIDMIRE 292 (311)
Q Consensus 222 ~Slpn~~~~~~~~~--~~----~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~~ 292 (311)
. ++. .++... .+ +|+|...+..+.. ....++.+++ .+.++++|.++.++||+. ++++|++++
T Consensus 252 ~-~~~---~ei~~~~~~~~~~~~~d~~~ky~~~~~-----~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~ 322 (373)
T 3lwb_A 252 A-STL---GEIRVAGVRGREDSFYDFATKYLDDAA-----ELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLT 322 (373)
T ss_dssp E-CCC---EEEECCSTTCSEESSSCHHHHHTCTTC-----EEESSCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEE
T ss_pred E-eee---eEEEccCCCCccccccchhhcccCCCc-----eEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEE
Confidence 1 111 111111 12 5666554332111 0011233443 467999999999999995 788999998
Q ss_pred CCCCCeEEEEEecCCCCC
Q 021495 293 HGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 293 ~~tg~~~~ViDVNyfPG~ 310 (311)
. +| + |++|||..|||
T Consensus 323 ~-dg-~-~vlEIN~~PG~ 337 (373)
T 3lwb_A 323 D-DG-P-VINEINTMPGF 337 (373)
T ss_dssp T-TE-E-EEEEEESSCCC
T ss_pred C-CC-C-EEEEecCCCCC
Confidence 6 45 6 89999999996
No 23
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.76 E-value=3.7e-17 Score=157.20 Aligned_cols=204 Identities=13% Similarity=0.116 Sum_probs=140.7
Q ss_pred CccEEEEecCChhH-HHHHHHHHHhCCCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcc
Q 021495 73 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 150 (311)
Q Consensus 73 p~DviLhK~t~~~~-~~~l~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~ 150 (311)
.+|+|+--+.+..- -..++..++. -+++++ .++.++..+.||..|.+.++++ +|++|++..+.+....
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~-- 176 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEF-YRIAFIGPRIEASVLSYNKYLTKLYAKDL-------GIKTLDYVLLNEKNRA-- 176 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHH-TTCCEESCCHHHHHHHHSHHHHHHHHHHH-------TCBCCCCEEECTTTGG--
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHHC-------CcCCCCEEEEeCCchH--
Confidence 45666655443210 0124555544 478887 6799999999999999999885 8999999998543210
Q ss_pred hhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-------CCCCeEEEecccCCC-eE---EEEEEECCEEEEE
Q 021495 151 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGG-IL---FKIYIIGETIKVV 219 (311)
Q Consensus 151 ~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~P~vvQEfInH~G-~~---~KVyVVGd~v~~~ 219 (311)
+......++||+|+||..++| |.++.+|.++++|.+ .+.++++||||+ | ++ +.|.| ++++.+.
T Consensus 177 ~~~~~~~lg~PvvVKP~~g~s---s~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~--G~~E~svi~v~v-~g~~~~~ 250 (367)
T 2pvp_A 177 NALDLMNFNFPFIVKPSNAGS---SLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ--GVKEYNLAGCKI-KKDFCFS 250 (367)
T ss_dssp GHHHHCCSCSCEEEEESSCCT---TTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT--TCEEEEEEEEEE-TTEEEEE
T ss_pred HHHHHhccCCCEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC--CCceeeEEEEEE-CCEEEEE
Confidence 111135789999999998543 577999999988764 367899999995 7 99 77888 8875432
Q ss_pred -EEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCc-EeEEEEEEeCCC
Q 021495 220 -RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLR-LFNIDMIREHGM 295 (311)
Q Consensus 220 -~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~t 295 (311)
.+.. + ..++|+|......+.+ ...+++.+++ .+.++++|.++.++||+. ++++|++++ +
T Consensus 251 ~~ei~-~---------~~~~~d~~~ky~~g~~-----~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~--~ 313 (367)
T 2pvp_A 251 YIEEP-N---------KQEFLDFKQKYLDFSR-----NKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI--E 313 (367)
T ss_dssp EEEET-T---------TTEEECCCCSSCCSCC-----CSCCCCCCCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEE--T
T ss_pred EEEEe-c---------CCceEcccccccCCCe-----eEEecCCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEE--C
Confidence 2221 1 1246666554432111 1111233443 467899999999999996 778999998 3
Q ss_pred CCeEEEEEecCCCCC
Q 021495 296 RDVFYVIDINYFPGR 310 (311)
Q Consensus 296 g~~~~ViDVNyfPG~ 310 (311)
| ++|++|||..||+
T Consensus 314 g-~~~vlEiN~rpg~ 327 (367)
T 2pvp_A 314 N-EVYLNEINPIPGS 327 (367)
T ss_dssp T-EEEEEEEESSCGG
T ss_pred C-eEEEEEEeCCCCC
Confidence 4 6999999999996
No 24
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.75 E-value=1.2e-17 Score=174.13 Aligned_cols=234 Identities=14% Similarity=0.117 Sum_probs=153.3
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCe-eeeCchhHHHHhcCHHHHHHHHH
Q 021495 45 QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEV-TILDPPDAIKHLHNRQSMLQDVA 123 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v-~ViDp~~ai~~l~dR~~~l~~l~ 123 (311)
.+.+++.|+++||+++.++.+.++..-|--|-+ +.. -|+. +.-++..++..+.||..+.+.|+
T Consensus 435 t~~Iv~~A~~~gid~~vlg~e~~l~~lg~~~~~-~~i---------------g~~~~t~~~s~~aa~~~~DK~~tk~lL~ 498 (757)
T 3ln7_A 435 TQALLFDVIQKGIHTEILDENDQFLCLKYGDHI-EYV---------------KNGNMTSHDSYISPLIMENKVVTKKVLQ 498 (757)
T ss_dssp HHHHHHHHHHHTCEEEEEETTTTEEEEEETTEE-EEE---------------ETTTBCSSSBSHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEECCCHHHHHhcccccc-eee---------------ccCccCCCCHHHHHHHhcCHHHHHHHHH
Confidence 345889999999999999988776543322222 111 1333 44577889999999999999998
Q ss_pred hccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEE----cCcccccc-------CCC
Q 021495 124 DLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLA----YDRFSLSE-------LEP 192 (311)
Q Consensus 124 ~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv----~~~~~L~~-------l~~ 192 (311)
+. +|++|++.++.+. ++..+. ....++||+|+||..++| |.+|.++ .+.++|.+ .+.
T Consensus 499 ~~-------GIPvP~~~~~~~~-~ea~~~-~~~~~g~PvVVKP~~g~~---G~GV~iv~~~v~~~eel~~al~~a~~~~~ 566 (757)
T 3ln7_A 499 KA-------GFNVPQSVEFTSL-EKAVAS-YALFENRAVVIKPKSTNY---GLGITIFQQGVQNREDFAKALEIAFREDK 566 (757)
T ss_dssp HH-------TCCCCCEEEESCH-HHHHHG-GGGSSSSCEEEEESSCST---TTTCEECSSCCCCHHHHHHHHHHHHHHCS
T ss_pred HC-------CcCCCCEEEECCH-HHHHHH-HHHhcCCCEEEEeCCCCC---CCCeEEecCCCCCHHHHHHHHHHHHhcCC
Confidence 85 8999999988532 111111 125689999999988443 6789998 78877754 267
Q ss_pred CeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccc--------ccce---------------------------
Q 021495 193 PMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELA--------KVVS--------------------------- 237 (311)
Q Consensus 193 P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~--------~~~~--------------------------- 237 (311)
++++|||| .|++++|+|+|++++.+.++..+++.-+... .|..
T Consensus 567 ~vlVEefI--~G~Ei~v~Vlggkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~ 644 (757)
T 3ln7_A 567 EVMVEDYL--VGTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQ 644 (757)
T ss_dssp SEEEEECC--CSEEEEEEEETTEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHHHH
T ss_pred cEEEEEcC--CCcEEEEEEECCEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHHHHHHc
Confidence 89999999 4899999999999998655533432100000 0000
Q ss_pred eeeeccccccc---------ccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCC------CCCeEEEE
Q 021495 238 VFRFPRVSSAA---------ASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHG------MRDVFYVI 302 (311)
Q Consensus 238 ~~~~~~vs~~~---------~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~------tg~~~~Vi 302 (311)
-++.++|-..+ +.+.++...... -...+..+++|.++.+++|+.+.|+|+++++- .++.+.||
T Consensus 645 g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~dvt--d~i~p~~~~~a~~aa~~lGl~~~GvDli~~di~~p~~~~~~~~~ii 722 (757)
T 3ln7_A 645 GLTIDSIPAKDQLVQLRANSNISTGGDSIDMT--DEMHESYKQLAVGITKAMGAAVCGVDLIIPDLKQPATPNLTSWGVI 722 (757)
T ss_dssp TCCSSSCCCSSCEEECCSSCCGGGTCCEEECT--TTSCHHHHHHHHHHHHHHTCSEEEEEEEESCSSSCCCSSTTTCEEE
T ss_pred CCCccccCCCCCEEEeecccccccCccceecc--ccCCHHHHHHHHHHHHHhCCCEEEEEEEecCccccccccCCCeEEE
Confidence 01111111110 111122111100 12356789999999999999999999999741 11247899
Q ss_pred EecCCCCC
Q 021495 303 DINYFPGR 310 (311)
Q Consensus 303 DVNyfPG~ 310 (311)
|||.-||+
T Consensus 723 EvN~~P~~ 730 (757)
T 3ln7_A 723 EANFNPMM 730 (757)
T ss_dssp EEESSCCH
T ss_pred EEcCCcch
Confidence 99999996
No 25
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.71 E-value=9.8e-17 Score=147.65 Aligned_cols=217 Identities=13% Similarity=0.133 Sum_probs=142.7
Q ss_pred hHHHHHHHhCCCeEEEeeCCCCC-C-----------------------------CCCCccEEEEecCCh---hH--HHHH
Q 021495 46 PKLEILARNKGISFVAIDQNRPL-S-----------------------------DQGPFDVVLHKLSGM---EW--CKII 90 (311)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl-~-----------------------------~qgp~DviLhK~t~~---~~--~~~l 90 (311)
..+...++++|++++.+|.+..- . .-..+|+|+.+.... ++ ...+
T Consensus 22 ~~l~~a~~~~G~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~ 101 (316)
T 1gsa_A 22 FAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYI 101 (316)
T ss_dssp HHHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEECSCSSCCEEEEEEEEEEGGGSSEEEECCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEchhHeEEECCeEEEEEeeeEeccCcccceeccCccccccccCCEEEEecCCCCchhhHHHHHH
Confidence 45888999999999999875311 0 001368888776432 12 2233
Q ss_pred HHHHHhCCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCC
Q 021495 91 EDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD 170 (311)
Q Consensus 91 ~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~ 170 (311)
.+.++. -+++++++++++..+.||..+.+.++ ++|++..+++ .+++.+.+. .++ |+|+||..+
T Consensus 102 ~~~l~~-~g~~~~~~~~~~~~~~dK~~~~~~l~-----------~~P~t~~~~~-~~~~~~~~~--~~~-p~vvKP~~g- 164 (316)
T 1gsa_A 102 LERAEE-KGTLIVNKPQSLRDCNEKLFTAWFSD-----------LTPETLVTRN-KAQLKAFWE--KHS-DIILKPLDG- 164 (316)
T ss_dssp HHHHHH-TTCEEESCHHHHHHCCTTGGGGGGTT-----------TSCCEEEESC-HHHHHHHHH--HHS-SEEEECSSC-
T ss_pred HHHHHH-cCCeEecCHHHHHhhhhHHHHHhhhh-----------cCCCeEEeCC-HHHHHHHHH--HcC-CEEEEECCC-
Confidence 344434 46889999999999999998876542 7899988842 222222222 245 999999984
Q ss_pred CCCcceeeEEEc-Ccccccc-------C-CCCeEEEecccCC-CeEEEEEEECCEEEE--EEEecCCCCcccccccccee
Q 021495 171 GSAKSHELFLAY-DRFSLSE-------L-EPPMLLQEFVNHG-GILFKIYIIGETIKV--VRRFSLPNVSKRELAKVVSV 238 (311)
Q Consensus 171 GS~~sh~m~lv~-~~~~L~~-------l-~~P~vvQEfInH~-G~~~KVyVVGd~v~~--~~R~Slpn~~~~~~~~~~~~ 238 (311)
+ +|.++.++. +.++|.. . ..++++||||+.. +++++++++|+++.. +.|.+.. +++..+
T Consensus 165 -~-~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~~g~~~~~~~~r~~~~----~~~~~~--- 235 (316)
T 1gsa_A 165 -M-GGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQG----GETRGN--- 235 (316)
T ss_dssp -C-TTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEECSEEEEEECCS----SCSCCC---
T ss_pred -C-CcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEECCEEeeeEEEEeCCC----CCceeE---
Confidence 3 467899998 7776643 2 3689999999863 799999999999875 3454321 122111
Q ss_pred eeecccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHH---hCCcEeEEEEEEeCCCCCeEEEEEecC-C-CCC
Q 021495 239 FRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHR---LGLRLFNIDMIREHGMRDVFYVIDINY-F-PGR 310 (311)
Q Consensus 239 ~~~~~vs~~~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~---LGL~lfG~Dvi~~~~tg~~~~ViDVNy-f-PG~ 310 (311)
.+..+ ...| .++ .+.++++|.++.++ +|+.+.|+|++ | . ||+|||. + ||+
T Consensus 236 -----~~~gg------~~~~--~~~--~~~~~~~a~~~~~~l~~~g~~~~~vD~~-----g-~-~~iEvN~r~~~~~ 290 (316)
T 1gsa_A 236 -----LAAGG------RGEP--RPL--TESDWKIARQIGPTLKEKGLIFVGLDII-----G-D-RLTEINVTSPTCI 290 (316)
T ss_dssp -----GGGTC------EEEE--EEC--CHHHHHHHHHHHHHHHHTTCCEEEEEEE-----T-T-EEEEEECSSCCCH
T ss_pred -----EccCC------cccc--CCC--CHHHHHHHHHHHHHHHhCCCcEEEEEec-----C-C-EEEEEcCCCCcch
Confidence 11111 1111 111 24578888888876 59999999998 4 3 6999999 6 464
No 26
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.68 E-value=2.1e-15 Score=144.91 Aligned_cols=238 Identities=15% Similarity=0.172 Sum_probs=153.4
Q ss_pred cEEEEEEeCchhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEE-EecCChhH------------------HH
Q 021495 28 RLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVL-HKLSGMEW------------------CK 88 (311)
Q Consensus 28 ~~~Vgy~~~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviL-hK~t~~~~------------------~~ 88 (311)
..+||..-.-. +...+...|++.|++++.+|.+..-....-.|-.+ ....|.+. ..
T Consensus 14 ~k~IlIlG~G~-----~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~e~~~~ 88 (389)
T 3q2o_A 14 GKTIGIIGGGQ-----LGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEFENIDY 88 (389)
T ss_dssp TSEEEEECCSH-----HHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESCCCCCH
T ss_pred CCEEEEECCCH-----HHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeeccccccH
Confidence 34555554432 45568889999999999999864221111122211 11222111 01
Q ss_pred HHHHHHHhCCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCc
Q 021495 89 IIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLV 168 (311)
Q Consensus 89 ~l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~ 168 (311)
.+.++++++. + +-.++++++.+.||..+.+.|+++ +|++|++..+.+. ++..+ ....++||+|+||..
T Consensus 89 ~~~~~l~~~g-~-~~~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~-~~~~~--~~~~~g~P~vvKp~~ 156 (389)
T 3q2o_A 89 RCLQWLEKHA-Y-LPQGSQLLSKTQNRFTEKNAIEKA-------GLPVATYRLVQNQ-EQLTE--AIAELSYPSVLKTTT 156 (389)
T ss_dssp HHHHHHHHHS-C-CTTCSHHHHHTTSHHHHHHHHHHT-------TCCCCCEEEESSH-HHHHH--HHHHHCSSEEEEESS
T ss_pred HHHHHHHhhC-c-cCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECCH-HHHHH--HHHhcCCCEEEEeCC
Confidence 1222333322 3 668899999999999999999885 8999999988532 11212 223578999999987
Q ss_pred CCCCCcceeeEEEcCccccccC-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEEecCCCCccccccccceeee
Q 021495 169 VDGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFR 240 (311)
Q Consensus 169 a~GS~~sh~m~lv~~~~~L~~l-----~~P~vvQEfInH~G~~~KVyVVGd---~v~~~~R~Slpn~~~~~~~~~~~~~~ 240 (311)
++| .+.+|.++.++++|.+. +.++++||||+ +++++.|.++++ ++.+ +|-. +.....+++.
T Consensus 157 ~~~--~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~-g~~E~~v~~~~~~~G~~~~-----~~~~---e~~~~~g~~~ 225 (389)
T 3q2o_A 157 GGY--DGKGQVVLRSEADVDEARKLANAAECILEKWVP-FEKEVSVIVIRSVSGETKV-----FPVA---ENIHVNNILH 225 (389)
T ss_dssp CCS--SSCCEEEESSGGGHHHHHHHHHHSCEEEEECCC-CSEEEEEEEEECTTCCEEE-----CCCE---EEEEETTEEE
T ss_pred CCC--CCCCeEEECCHHHHHHHHHhcCCCCEEEEeccc-CceEEEEEEEEcCCCCEEE-----ecCe---eeEEcCCceE
Confidence 433 36899999999998753 57999999997 459999999975 3322 1211 1001112221
Q ss_pred ecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 241 FPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 241 ~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
. + ..| +.+++ .+.++++|.++.++||+. ++++|++++. +| ++||+|||.-||.
T Consensus 226 ~---~----------~~p--~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~-dg-~~~viEiNpR~~~ 281 (389)
T 3q2o_A 226 E---S----------IVP--ARITEELSQKAIAYAKVLADELELVGTLAVEMFATA-DG-EIYINELAPRPHN 281 (389)
T ss_dssp E---E----------EES--CSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TS-CEEEEEEESSCCG
T ss_pred E---E----------ECC--CCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CC-CEEEEEeeCCCCC
Confidence 0 0 001 11222 467899999999999997 7789999985 34 6999999999973
No 27
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.67 E-value=1.3e-15 Score=147.79 Aligned_cols=242 Identities=15% Similarity=0.149 Sum_probs=155.0
Q ss_pred CccEEEEEEeCchhhhccchhHHHHHHHhCCCeEEEeeCCCCC-CCCC--CccEEEEecCChhHHH--------------
Q 021495 26 PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPL-SDQG--PFDVVLHKLSGMEWCK-------------- 88 (311)
Q Consensus 26 ~~~~~Vgy~~~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl-~~qg--p~DviLhK~t~~~~~~-------------- 88 (311)
++..+||..-.- .....++..|++.|+.++.+| ...- ..|- .+..+.-...|.+...
T Consensus 22 m~~~~I~ilGgG-----~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~e~e 95 (403)
T 3k5i_A 22 WNSRKVGVLGGG-----QLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTAEIE 95 (403)
T ss_dssp CSCCEEEEECCS-----HHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEESSS
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEECCC
Confidence 344566666543 245568889999999999999 4311 1110 1122222333322111
Q ss_pred ----HHHHHHHhCCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEcc-CCCCcchhhHhcCCCCcEE
Q 021495 89 ----IIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITK-DSLSIPDQVFEAGLKLPLV 163 (311)
Q Consensus 89 ----~l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~-~~~~~~~~l~~~~l~fP~V 163 (311)
.+.+++++ ++++..++++++.+.||..+.+.++++ +|++|++..+.. +.+++.+ ....++||+|
T Consensus 96 ~~~~~~l~~l~~--g~~v~p~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~--~~~~~g~P~V 164 (403)
T 3k5i_A 96 HVDTYALEEVAS--EVKIEPSWQAIRTIQNKFNQKEHLRKY-------GIPMAEHRELVENTPAELAK--VGEQLGYPLM 164 (403)
T ss_dssp CSCHHHHHHHTT--TSEESSCHHHHHHHTSHHHHHHHHHTT-------TCCBCCEEEESSCCHHHHHH--HHHHHCSSEE
T ss_pred CCCHHHHHHHHc--CCccCcCHHHHHHhcCHHHHHHHHHHC-------CcCCCCEEEEcCCCHHHHHH--HHHHhCCCEE
Confidence 11223333 778899999999999999999999875 899999999852 1111111 2246789999
Q ss_pred EeeCcCCCCCcceeeEEEcCccccccC-----CCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccccccee
Q 021495 164 AKPLVVDGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSV 238 (311)
Q Consensus 164 vKP~~a~GS~~sh~m~lv~~~~~L~~l-----~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~ 238 (311)
+||..++ .+|.++.++.++++|.+. +.++++||||+ +|+++.|.++++.--+. ..|-. +.....++
T Consensus 165 vKp~~gg--~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~-~~~E~sv~v~~~~~g~~---~~p~~---~~~~~~g~ 235 (403)
T 3k5i_A 165 LKSKTMA--YDGRGNFRVNSQDDIPEALEALKDRPLYAEKWAY-FKMELAVIVVKTKDEVL---SYPTV---ETVQEDSI 235 (403)
T ss_dssp EEESSSC--CTTTTEEEECSTTSHHHHHHHTTTSCEEEEECCC-EEEEEEEEEEECSSCEE---ECCCE---EEEEETTE
T ss_pred EEeCCCC--cCCCCEEEECCHHHHHHHHHhcCCCcEEEecCCC-CCeEEEEEEEEcCCCEE---EeCCe---eeEEeCCE
Confidence 9998732 236789999999887652 56899999995 37999999998732110 12211 10011112
Q ss_pred eeecccccccccCCCCCCCCCCCC-CCC--hHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 239 FRFPRVSSAAASADDADLDPGIAE-LPP--RPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 239 ~~~~~vs~~~~~a~~~~~~p~~~~-~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
+.. + ..| +. +++ .+.++++|.++.++||+. ++++|++++. +| ++||+|||.-||.
T Consensus 236 ~~~---~----------~~P--a~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~-dg-~~~v~EiNpR~~~ 294 (403)
T 3k5i_A 236 CKL---V----------YAP--ARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLE-DD-SIMLCEIASRIHN 294 (403)
T ss_dssp EEE---E----------EES--CSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEET-TS-CEEEEEEESSCCG
T ss_pred EEE---E----------EeC--CCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CC-cEEEEEeecCCCC
Confidence 110 0 001 11 222 457889999999999997 6789999985 34 6999999999973
No 28
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=99.66 E-value=2.6e-15 Score=143.43 Aligned_cols=223 Identities=14% Similarity=0.142 Sum_probs=145.7
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCC--C---CC----------------CCccEEEEecCChhHHHHHHHHHHhCCCeeee
Q 021495 45 QPKLEILARNKGISFVAIDQNRPL--S---DQ----------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL 103 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl--~---~q----------------gp~DviLhK~t~~~~~~~l~~y~~~hP~v~Vi 103 (311)
...+...+++.|++++.+|.+..- . +. ..+|+|+--. + .....+.+++++ -++++.
T Consensus 13 g~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~d~v~~~~-e-~~~~~~~~~l~~-~gi~~~ 89 (380)
T 3ax6_A 13 GKMMTLEAKKMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDL-E-HIDVQTLKKLYN-EGYKIH 89 (380)
T ss_dssp HHHHHHHHHHTTCEEEEEESSTTCTTGGGSSEEEECCTTCHHHHHHHHHTCSEEEESC-S-CSCHHHHHHHHH-TTCEES
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCchhhhCceEEECCCCCHHHHHHHHhcCCEEEecc-c-CCCHHHHHHHHH-CCCeEC
Confidence 445777889999999999985321 1 10 1245544311 1 111222334433 467778
Q ss_pred CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcC
Q 021495 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 183 (311)
Q Consensus 104 Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~ 183 (311)
+++++++.+.||..+.+.++++ +|++|++..+++.. + ....++||+|+||..++ -+|.++.++.+
T Consensus 90 ~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~~----~--~~~~~~~P~vvKp~~~~--y~g~Gv~~v~~ 154 (380)
T 3ax6_A 90 PSPYTLEIIQDKFVQKEFLKKN-------GIPVPEYKLVKDLE----S--DVREFGFPVVQKARKGG--YDGRGVFIIKN 154 (380)
T ss_dssp SCHHHHHHHHSHHHHHHHHHHT-------TCCCCCEEECSSHH----H--HHHTTCSSEEEEESCCC-------EEEECS
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEeCCHH----H--HHHhcCCCEEEEecCCC--CCCCCeEEECC
Confidence 9999999999999999999885 79999999875321 1 23468999999999743 13678999999
Q ss_pred ccccccC-CCCeEEEecccCCCeEEEEEEECC---EEEEEE-EecCCCCccccccccceeeeecccccccccCCCCCCCC
Q 021495 184 RFSLSEL-EPPMLLQEFVNHGGILFKIYIIGE---TIKVVR-RFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDP 258 (311)
Q Consensus 184 ~~~L~~l-~~P~vvQEfInH~G~~~KVyVVGd---~v~~~~-R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p 258 (311)
+++|.+. +.++++||||+. |+++.|.++++ ++.+.. .... +. ...+.++. ...|
T Consensus 155 ~~el~~~~~~~~lvEe~i~~-g~e~sv~~~~~~~G~~~~~~~~~~~--~~-----~~~~~~~~-------------~~~p 213 (380)
T 3ax6_A 155 EKDLENAIKGETYLEEFVEI-EKELAVMVARNEKGEIACYPVVEMY--FD-----EDANICDT-------------VIAP 213 (380)
T ss_dssp GGGGGGCCCSSEEEEECCCE-EEEEEEEEEECSSCCEEEEEEEEEC---------------CE-------------EEES
T ss_pred HHHHHHHhcCCEEEEeccCC-CeeEEEEEEECCCCCEEEECCeeee--ec-----ccCCeeEE-------------EECC
Confidence 9988764 578999999963 89999999975 443321 1111 00 00011110 0011
Q ss_pred CCCCCCC--hHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 259 GIAELPP--RPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 259 ~~~~~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
+.+++ .+.++++|.++.++||+. ++++|++++. +| +++++|||.-||.
T Consensus 214 --~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~g-~~~viEiN~R~~~ 264 (380)
T 3ax6_A 214 --ARIEEKYSKIAREIATSVVEALEGVGIFGIEMFLTK-QG-EILVNEIAPRPHN 264 (380)
T ss_dssp --CSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TS-CEEEEEEESSCCG
T ss_pred --CCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CC-cEEEEEecCCCCC
Confidence 11222 357899999999999995 7789999985 35 6899999999884
No 29
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.66 E-value=1e-14 Score=140.02 Aligned_cols=222 Identities=14% Similarity=0.168 Sum_probs=145.2
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCCCCCC---------------------CccEEEEecCChhHHHHHHHHHHhCCCeeee
Q 021495 45 QPKLEILARNKGISFVAIDQNRPLSDQG---------------------PFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL 103 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl~~qg---------------------p~DviLhK~t~~~~~~~l~~y~~~hP~v~Vi 103 (311)
...++..|++.|++++.+|.+..-.... ..|+|.--..+ .....+.+ ++++. .+.
T Consensus 24 g~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~~E~-~~~~~l~~-l~~~~--~v~ 99 (377)
T 3orq_A 24 GKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFEN-ISAQQLKL-LCEKY--NIP 99 (377)
T ss_dssp HHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEESSTT-SCHHHHHH-HHHHS--CCT
T ss_pred HHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCcceecccc-cCHHHHHH-Hhhhc--CCC
Confidence 4467889999999999999864211111 12333111100 00112222 22222 345
Q ss_pred CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcC
Q 021495 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 183 (311)
Q Consensus 104 Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~ 183 (311)
.++++++.+.||..+.+.++++ +|++|++..+.+. +++.+ ....++||+|+||..+ || +|+++.++.+
T Consensus 100 p~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~-~~~~~--~~~~~g~P~vvKp~~g-g~-~g~Gv~~v~~ 167 (377)
T 3orq_A 100 QGYQAIQLLQDRLTEKETLKSA-------GTKVVPFISVKES-TDIDK--AIETLGYPFIVKTRFG-GY-DGKGQVLINN 167 (377)
T ss_dssp TTTHHHHHHHSHHHHHHHHHHT-------TCCBCCEEEECSS-THHHH--HHHHTCSSEEEEESSS-CC-TTTTEEEECS
T ss_pred CCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECCH-HHHHH--HHHHcCCCEEEEeCCC-CC-CCCCeEEECC
Confidence 7889999999999999999875 8999999988532 22222 2346889999999873 22 4688999999
Q ss_pred ccccccC-----CCCeEEEecccCCC-eEEEEEEE-C--CEEEEEEEecCCCCccccccccceeeeecccccccccCCCC
Q 021495 184 RFSLSEL-----EPPMLLQEFVNHGG-ILFKIYII-G--ETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDA 254 (311)
Q Consensus 184 ~~~L~~l-----~~P~vvQEfInH~G-~~~KVyVV-G--d~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~ 254 (311)
+++|.+. +.++++||||+ | +++.|.++ + +.+.+ +|-. +.....+++.. +
T Consensus 168 ~~el~~a~~~~~~~~~ivEe~i~--g~~E~sv~~~~~~~g~~~~-----~~~~---e~~~~~g~~~~---~--------- 225 (377)
T 3orq_A 168 EKDLQEGFKLIETSECVAEKYLN--IKKEVSLTVTRGNNNQITF-----FPLQ---ENEHRNQILFK---T--------- 225 (377)
T ss_dssp TTSHHHHHHHHTTSCEEEEECCC--EEEEEEEEEEECGGGCEEE-----CCCE---EEEEETTEEEE---E---------
T ss_pred HHHHHHHHHhcCCCcEEEEccCC--CCEEEEEEEEEeCCCCEEE-----ECCE---eEEEECCEEEE---E---------
Confidence 9988652 57999999995 6 89999999 3 23332 1211 10011122110 0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 255 DLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 255 ~~~p~~~~~p~~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
..| +.+++.+.++++|.++.++||+. ++++|++++. +| ++||+|||.-||
T Consensus 226 -~~P--a~l~~~~~~~~~a~~i~~~lg~~G~~~ve~~~~~-~g-~~~v~EinpR~~ 276 (377)
T 3orq_A 226 -IVP--ARIDKTAEAKEQVNKIIQSIHFIGTFTVEFFIDS-NN-QLYVNEIAPRPH 276 (377)
T ss_dssp -EES--CSSCCHHHHHHHHHHHHTTSCCCEEEEEEEEEET-TC-CEEEEEEESSCC
T ss_pred -ECC--CCCCHHHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CC-cEEEEEeeCCcC
Confidence 001 11222678999999999999997 7889999985 34 699999999998
No 30
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.64 E-value=1.4e-14 Score=137.62 Aligned_cols=211 Identities=20% Similarity=0.300 Sum_probs=138.0
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCCCCC----------------------CCccEEEEecCChhHHHHHHHHHHhCCCeee
Q 021495 45 QPKLEILARNKGISFVAIDQNRPLSDQ----------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTI 102 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl~~q----------------------gp~DviLhK~t~~~~~~~l~~y~~~hP~v~V 102 (311)
...++..|++.|++.+.+|.+..-... ...|+|+-=.-. .....+...+.+.-++++
T Consensus 13 g~~~~~~Ak~~G~~vv~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~-~~~~~~~~~~~~~~~~~~ 91 (363)
T 4ffl_A 13 GFEAAYLSKKAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPVNEN-LACIEFLNSIKEKFSCPV 91 (363)
T ss_dssp HHHHHHHHHHTTCEEEEEESCTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEECCCC-HHHHHHHHHHGGGCSSCB
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEECCCC-hhHHHHHHHHHHHCCCcc
Confidence 345778999999999999976522111 124444322211 112223334445567888
Q ss_pred eCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEc
Q 021495 103 LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY 182 (311)
Q Consensus 103 iDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~ 182 (311)
..++++++.+.||..+-+.++++ +|++|.+ ..++||+|+||..++ +|.+|.++.
T Consensus 92 g~~~~a~~~~~dK~~~k~~l~~~-------gip~~~~----------------~~ig~P~vvKp~~g~---g~~gv~~v~ 145 (363)
T 4ffl_A 92 LFDFEAYRISRDKKKSKDYFKSI-------GVPTPQD----------------RPSKPPYFVKPPCES---SSVGARIIY 145 (363)
T ss_dssp CCCHHHHHHHTSHHHHHHHHHHT-------TCCCCCB----------------SCSSSCEEEECSSCC---TTTTCEEEC
T ss_pred CCCHHHHHHhhCHHHHHHHHHhc-------CCCCCCc----------------eecCCCEEEEECCCC---CCcCeEEec
Confidence 89999999999999999999885 7788753 246899999998744 367899999
Q ss_pred CccccccCCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCC
Q 021495 183 DRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAE 262 (311)
Q Consensus 183 ~~~~L~~l~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~ 262 (311)
|.+++.....++++|||| .|..+-|.+++|.-..+. .+.. .+...+ ...+. ... +
T Consensus 146 ~~~~~~~~~~~~~~ee~i--~g~e~sv~~~~d~~~~~~---~~~~--~~~~~~-------~~~~~-------~~~----p 200 (363)
T 4ffl_A 146 DDKDLEGLEPDTLVEEYV--EGEVVSLEVVGDGSHFAV---VKET--LVHIDE-------TYDCH-------MVT----P 200 (363)
T ss_dssp ------CCCTTCEEEECC--CSEEEEEEEEEESSCEEE---CCCE--EEEECT-------TSCEE-------EEE----E
T ss_pred cHHHhhhhccchhhhhhc--cCcEEEEEEEEECCeEEE---EEEE--EeccCC-------cccce-------eec----c
Confidence 999999999999999999 589999999875421110 1100 000000 00000 001 1
Q ss_pred CCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecC-CCCC
Q 021495 263 LPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINY-FPGR 310 (311)
Q Consensus 263 ~p~~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNy-fPG~ 310 (311)
.+..++++++|.++.++||+. .+++|+++++ + .+||+|||. |||.
T Consensus 201 ~~~~~~~~~~a~~~~~~l~~~G~~~vef~~~~--~-~~~viEiN~R~~g~ 247 (363)
T 4ffl_A 201 LPANPLFRQISHDLAANLPLKGIMDVEAIFGP--K-GLRVIEIDARFPSQ 247 (363)
T ss_dssp CCCCHHHHHHHHHHHHTTTCEEEEEEEEEEET--T-EEEEEEEECSCCSS
T ss_pred hhHHHHHHHHHHHHHHhCCccceeeeeeEEeC--C-eEEEEEEeCCCCCC
Confidence 223467899999999999997 5569999985 2 589999999 8884
No 31
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.64 E-value=1.9e-14 Score=139.48 Aligned_cols=221 Identities=16% Similarity=0.183 Sum_probs=137.3
Q ss_pred HHHHHHHhCCCeEEEeeCCCC-CCCC-CCccEEEE-ecC-Ch-hHHHHHHHHHHh----------------------CCC
Q 021495 47 KLEILARNKGISFVAIDQNRP-LSDQ-GPFDVVLH-KLS-GM-EWCKIIEDYRQK----------------------HPE 99 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~p-l~~q-gp~DviLh-K~t-~~-~~~~~l~~y~~~----------------------hP~ 99 (311)
-+++.|+++|++.+.+|.... ...+ .-.|-.++ -.+ +. .+.+.+.+..++ .-+
T Consensus 19 ~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~id~V~~~~e~~~~~~a~l~e~lg 98 (425)
T 3vot_A 19 FIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTFVEFPFDGVMTLFEPALPFTAKAAEALN 98 (425)
T ss_dssp HHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHHHHSCCSEEECCCGGGHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhhhhcCCCEEEECCchhHHHHHHHHHHcC
Confidence 356889999999999976532 2222 12333322 112 21 122222222222 223
Q ss_pred eeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeE
Q 021495 100 VTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 179 (311)
Q Consensus 100 v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~ 179 (311)
++ =.++++++.+.||..|-+.++++ +|++|++..+++.. + +....++||+|+||.. |+ .|.+|.
T Consensus 99 lp-g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~~-~----~~~~~~g~P~vvKp~~--g~-gs~Gv~ 162 (425)
T 3vot_A 99 LP-GLPFTTMENCRNKNKTRSILQQN-------GLNTPVFHEFHTLA-D----LENRKLSYPLVVKPVN--GF-SSQGVV 162 (425)
T ss_dssp CS-SCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEESSGG-G----GTTCCCCSSEEEEESC--C------CE
T ss_pred CC-CCCHHHHHHhhCHHHHHHHHHHC-------CCCCCceeccCcHH-H----HHHhhcCCcEEEEECC--CC-CCCCce
Confidence 33 24789999999999999999885 89999999985322 1 2346899999999987 33 468899
Q ss_pred EEcCccccccC------------------CCCeEEEecccCCCeEEEEEEE--CCEEEEE--EEecCCCCccccccccce
Q 021495 180 LAYDRFSLSEL------------------EPPMLLQEFVNHGGILFKIYII--GETIKVV--RRFSLPNVSKRELAKVVS 237 (311)
Q Consensus 180 lv~~~~~L~~l------------------~~P~vvQEfInH~G~~~KVyVV--Gd~v~~~--~R~Slpn~~~~~~~~~~~ 237 (311)
++.++++|.+. +.++++||||+ |..|-|.++ ++++.+. .++.... +
T Consensus 163 ~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~e~sv~~~~~~g~~~~~~~~~~~~~~----------~ 230 (425)
T 3vot_A 163 RVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID--GPEFAIETLSIQGNVHVLSIGYKGNSK----------G 230 (425)
T ss_dssp EECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC--SCEEEEEEEEETTEEEEEEEEEEECCC----------C
T ss_pred EechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec--CcEEEEEEEEeCCcEEEEeEEEEeccC----------C
Confidence 99999887541 46799999995 777776554 5565432 2221110 0
Q ss_pred eeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCc--EeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 238 VFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLR--LFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 238 ~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~--lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
.+ |.. .....| +.+++ .+.+.++|.++.++||+. .+++|++++. +| ++|++|||.=||
T Consensus 231 ~~-~~~---------~~~~~P--a~l~~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~-dG-~~~~iEiN~R~g 292 (425)
T 3vot_A 231 PF-FEE---------GVYIAP--AQLKEETRLAIVKEVTGAVSALGIHQGPAHTELRLDK-DG-TPYVIEVGARIG 292 (425)
T ss_dssp SB-CCC---------CEEEES--CCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEECT-TC-CEEEEEEESSCG
T ss_pred Cc-ccc---------ceEeec--ccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEEEe-CC-cEEEEEEecCCC
Confidence 00 000 000011 12222 456889999999999984 7889999985 45 689999999875
No 32
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.63 E-value=1.6e-14 Score=137.34 Aligned_cols=222 Identities=14% Similarity=0.114 Sum_probs=144.4
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCCC-CC-------------------CCccEEEEecCChhHHHHHHHHHHhCCCeeeeC
Q 021495 45 QPKLEILARNKGISFVAIDQNRPLS-DQ-------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILD 104 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl~-~q-------------------gp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViD 104 (311)
...+...+++.|++.+.+|.+..-. .+ ..+|+|+--.-+ .....++ .+++. + .+..
T Consensus 11 g~~~~~a~~~~G~~v~~~~~~~~~~~~~~a~~~~~~~~d~~~l~~~~~~~d~v~~~~e~-~~~~~~~-~l~~~-g-~~g~ 86 (369)
T 3aw8_A 11 GRMLALAGYPLGLSFRFLDPSPEACAGQVGELVVGEFLDEGALLRFAEGLALVTYEFEN-VPVEAAR-RLEGR-L-PLYP 86 (369)
T ss_dssp HHHHHHHHTTBTCCEEEEESCTTCGGGGTSEEEECCTTCHHHHHHHHTTCSEEEECCTT-CCHHHHH-HHHHH-S-CBSS
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCChHHHhhceEecCCCCHHHHHHHHhCCCEEEECCCC-cCHHHHH-HHHHc-C-CcCC
Confidence 3456677888999999988763211 01 235666532222 1122233 33332 3 6788
Q ss_pred chhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCC-CCCcceeeEEEcC
Q 021495 105 PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD-GSAKSHELFLAYD 183 (311)
Q Consensus 105 p~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~-GS~~sh~m~lv~~ 183 (311)
++++++.+.||..+.+.++++ +|++|++..+.+. ++..+ ....++||+|+||..++ | |.++.++.+
T Consensus 87 ~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~--~~~~~g~P~vvKp~~~~~~---g~Gv~~v~~ 153 (369)
T 3aw8_A 87 PAKALEVAQDRLREKTFFQGL-------GVPTPPFHPVDGP-EDLEE--GLKRVGLPALLKTRRGGYD---GKGQALVRT 153 (369)
T ss_dssp CHHHHHHHTCHHHHHHHHHHH-------TCCCCCEEEESSH-HHHHH--HHTTTCSSEEEEECCC---------EEEECS
T ss_pred CHHHHHHhcCHHHHHHHHHHC-------CCCCCCceeeCCH-HHHHH--HHHHcCCCEEEEEcCCCCC---cceEEEECC
Confidence 999999999999999999885 8999999988532 11111 23468999999999854 4 578999999
Q ss_pred ccccccC-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEEecCCCCccccccccceeeeecccccccccCCCCC
Q 021495 184 RFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD 255 (311)
Q Consensus 184 ~~~L~~l-----~~P~vvQEfInH~G~~~KVyVVGd---~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~ 255 (311)
+++|.+. ..++++||||+. |+++.|.+++| ++.+ ++-. ..... .++++. +
T Consensus 154 ~~el~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~-----~~~~--~~~~~-~~~~~~---~---------- 211 (369)
T 3aw8_A 154 EEEALEALKALGGRGLILEGFVPF-DREVSLLAVRGRTGEVAF-----YPLV--ENRHW-GGILRL---S---------- 211 (369)
T ss_dssp HHHHHHHHTTTCSSSEEEEECCCC-SEEEEEEEEECTTSCEEE-----CCCE--EEEEE-TTEEEE---E----------
T ss_pred HHHHHHHHHhcCCCcEEEEEcCCC-CEEEEEEEEECCCCCEEE-----ECCe--eeeee-CCEEEE---E----------
Confidence 9887642 468999999963 89999999985 4433 1210 01100 111211 0
Q ss_pred CCCCCCC-CCC--hHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 256 LDPGIAE-LPP--RPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 256 ~~p~~~~-~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
..| +. +++ .+.++++|.++.++||+. ++++|++++. | +++++|||.-||.
T Consensus 212 ~~p--~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~--~-~~~viEiN~R~~~ 265 (369)
T 3aw8_A 212 LAP--APGASEALQKKAEAYALRAMEALDYVGVLALEFFQVG--E-ELLFNEMAPRVHN 265 (369)
T ss_dssp EES--CTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEESSCCG
T ss_pred ECC--CCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEEC--C-cEEEEEEeCCcCC
Confidence 001 11 221 456899999999999997 7789999985 4 6999999999874
No 33
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.61 E-value=5.6e-15 Score=140.22 Aligned_cols=218 Identities=13% Similarity=0.163 Sum_probs=126.1
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCCC-----CC-----------CCccEEEEecCChhHHHHHHHHHHhCCCeeeeCchhH
Q 021495 45 QPKLEILARNKGISFVAIDQNRPLS-----DQ-----------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDA 108 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl~-----~q-----------gp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~~a 108 (311)
...+...++++|++++.+|.+.... +. ..+|+|+--.-+.. .. +.++++. .+.+++++
T Consensus 13 ~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~v~~~~e~~~-~~-~~~~l~~----~~g~~~~~ 86 (365)
T 2z04_A 13 GWMTILEGRKLGFKFHVLEDKENAPACRVADRCFRTGQISEFVDSCDIITYEFEHIK-DE-VLEKCES----KLIPNPQA 86 (365)
T ss_dssp HHHHHHHHGGGTCEEEEECSSSSCHHHHHSSEEECGGGHHHHHHHCSEEEESSSCCC-HH-HHHHHTT----TBSSCTHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCchhhhccceeeHHHHHHHhhcCCEEEECCCCCc-HH-HHHHHhh----hcCCCHHH
Confidence 4457888999999999999864321 10 13688775443221 22 3333322 67788999
Q ss_pred HHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCC-CCCcceeeEEEcCcccc
Q 021495 109 IKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD-GSAKSHELFLAYDRFSL 187 (311)
Q Consensus 109 i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~-GS~~sh~m~lv~~~~~L 187 (311)
++.+.||..+.+.++++ +|++|++..++ . ++..+ ....++||+|+||..++ | |.++.++.++++|
T Consensus 87 ~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~-~~~~~--~~~~~~~P~vvKp~~~~~~---g~Gv~~v~~~~el 152 (365)
T 2z04_A 87 LYVKKSRIREKLFLKKH-------GFPVPEFLVIK-R-DEIID--ALKSFKLPVVIKAEKLGYD---GKGQYRIKKLEDA 152 (365)
T ss_dssp HHHHTCHHHHHHHHHTT-------TCCCCCEEEC------------------CEEEECC---------------------
T ss_pred HHHhhCHHHHHHHHHHc-------CCCCCCEEEEc-H-HHHHH--HHHhcCCCEEEEEcCCCcC---CCCeEEECCHHHH
Confidence 99999999999999875 89999999875 2 22222 12457899999998844 4 4678999999887
Q ss_pred ccC------CCCeEEEecccCCCeEEEEEEECC---EEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCC
Q 021495 188 SEL------EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDP 258 (311)
Q Consensus 188 ~~l------~~P~vvQEfInH~G~~~KVyVVGd---~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p 258 (311)
.+. +.++++||||+. |+++.|.+++| ++.+. +-. ..+.. .+.++. + ..|
T Consensus 153 ~~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~~-----~~~--~~~~~-~~~~~~---~----------~~p 210 (365)
T 2z04_A 153 NQVVKNHDKEESFIIEEFVKF-EAEISCIGVRDREGKTYFY-----PQP--FNKHE-EGILIY---N----------YVP 210 (365)
T ss_dssp ------------CEEEECCCC-SEEEEEEEEECTTCCEEEC-----CEE--EEEEE-TTEEEE---E----------EEE
T ss_pred HHHHHHhccCCCEEEEccCCC-CEEEEEEEEECCCCCEEEE-----CCE--EEEEe-CCEeEE---E----------ECC
Confidence 652 468999999974 89999999964 44321 100 00100 112211 0 011
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 259 GIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 259 ~~~~~p~~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
. .+ .+.++++|.++.++||+. .+++|++++. +| +++++|||.-||.
T Consensus 211 ~--~~--~~~~~~~~~~~~~~lg~~G~~~vd~~~~~-~g-~~~~iEiN~R~~~ 257 (365)
T 2z04_A 211 Y--AK--LKEAEEITKRLMELLDIVGVFTVEFFLLK-DG-RVLINEFAPRVHN 257 (365)
T ss_dssp E--EC--CHHHHHHHHHHHHHTTCCEEEEEEEEECT-TS-CEEEEEEESSCCG
T ss_pred H--hH--HHHHHHHHHHHHHHcCCEEEEEEEEEEeC-CC-cEEEEEeccCcCC
Confidence 1 11 467899999999999997 6789999975 34 6899999999874
No 34
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.59 E-value=9.6e-15 Score=139.54 Aligned_cols=222 Identities=12% Similarity=0.165 Sum_probs=143.2
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCCCC-----------------------CCCccEEEEecCChhHHHHHHHHHHhCCCee
Q 021495 45 QPKLEILARNKGISFVAIDQNRPLSD-----------------------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVT 101 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl~~-----------------------qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ 101 (311)
...+...++++|+.++.+|....-.. +..+|+|+--. +....+ +.+.+++ -++.
T Consensus 23 ~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~-e~~~~~-~~~~l~~-~gi~ 99 (391)
T 1kjq_A 23 GKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEI-EAIATD-MLIQLEE-EGLN 99 (391)
T ss_dssp HHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECS-SCSCHH-HHHHHHH-TTCE
T ss_pred HHHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHHcCCCEEEECC-CcCCHH-HHHHHHh-CCCC
Confidence 44678889999999999997532110 01355554422 111112 2233333 4677
Q ss_pred eeCchhHHHHhcCHHHHHHHH-HhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEE
Q 021495 102 ILDPPDAIKHLHNRQSMLQDV-ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (311)
Q Consensus 102 ViDp~~ai~~l~dR~~~l~~l-~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~l 180 (311)
+..++++++.+.||..+.+.+ +++ +|++|++..+.+ .++..+ ....++||+|+||.. |+ +|.++.+
T Consensus 100 ~~~~~~~~~~~~dK~~~~~~l~~~~-------gip~p~~~~~~~-~~~~~~--~~~~~g~P~vvKp~~--g~-gg~Gv~~ 166 (391)
T 1kjq_A 100 VVPCARATKLTMNREGIRRLAAEEL-------QLPTSTYRFADS-ESLFRE--AVADIGYPCIVKPVM--SS-SGKGQTF 166 (391)
T ss_dssp ESSCHHHHHHHHSHHHHHHHHHTTS-------CCCBCCEEEESS-HHHHHH--HHHHHCSSEEEEESC--C----CCCEE
T ss_pred cCCCHHHHHHhhCHHHHHHHHHHhC-------CCCCCCeeeeCC-HHHHHH--HHHhcCCCEEEEeCC--CC-CCCCeEE
Confidence 789999999999999999988 564 899999998853 222222 123578999999986 33 4688999
Q ss_pred EcCccccccC-----------CCCeEEEecccCCCeEEEEEEECC--EEEEEEEecCCCCccccccccceeeeecccccc
Q 021495 181 AYDRFSLSEL-----------EPPMLLQEFVNHGGILFKIYIIGE--TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSA 247 (311)
Q Consensus 181 v~~~~~L~~l-----------~~P~vvQEfInH~G~~~KVyVVGd--~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~ 247 (311)
+.++++|.+. ..++++||||+. |.++.|.++++ .+.. .+-. ..... .+++...
T Consensus 167 v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~g~~~-----~~~~--~~~~~---~~~~~~~--- 232 (391)
T 1kjq_A 167 IRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-DFEITLLTVSAVDGVHF-----CAPV--GHRQE---DGDYRES--- 232 (391)
T ss_dssp ECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-SEEEEEEEEEETTEEEE-----CCCE--EEEEE---TTEEEEE---
T ss_pred ECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-CeEEEEEEEEeCCCeEE-----ccCc--ceEEE---CCEEEEE---
Confidence 9999887541 468999999974 89999998854 3221 1100 00000 0111100
Q ss_pred cccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 248 AASADDADLDPGIAELPP--RPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 248 ~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL-~lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
..| +.+++ .+.+.++|.++.++||+ .++++|++++.+ ++|++|||.-||
T Consensus 233 --------~~p--~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~ 284 (391)
T 1kjq_A 233 --------WQP--QQMSPLALERAQEIARKVVLALGGYGLFGVELFVCGD---EVIFSEVSPRPH 284 (391)
T ss_dssp --------EEC--CCCCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEETT---EEEEEEEESSCC
T ss_pred --------EeC--CCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---cEEEEEEECCCC
Confidence 001 11222 45689999999999999 567799999853 589999999887
No 35
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.58 E-value=1.2e-14 Score=141.17 Aligned_cols=226 Identities=14% Similarity=0.178 Sum_probs=141.5
Q ss_pred chhHHHHHHHhCCCeEEEeeCCCCC--------------CC---------CCCccEEEEecCChhHHHHHHHHHHhCCCe
Q 021495 44 LQPKLEILARNKGISFVAIDQNRPL--------------SD---------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEV 100 (311)
Q Consensus 44 ~~~~l~~~~~~~gi~~v~iD~~~pl--------------~~---------qgp~DviLhK~t~~~~~~~l~~y~~~hP~v 100 (311)
....++..++++|++++.+|....- .+ +..+|+|+--.-+ ...+ +.+.+++ -++
T Consensus 30 ~g~~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e~-~~~~-~~~~l~~-~gi 106 (433)
T 2dwc_A 30 LGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEA-INLD-ALFEFEK-DGY 106 (433)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSC-SCHH-HHHHHHH-TTC
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHHcCCCEEEECccc-CCHH-HHHHHHh-cCC
Confidence 3446788889999999999976311 00 1246666553321 1122 2233333 356
Q ss_pred eeeCchhHHHHhcCHHHHHHHH-HhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeE
Q 021495 101 TILDPPDAIKHLHNRQSMLQDV-ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 179 (311)
Q Consensus 101 ~ViDp~~ai~~l~dR~~~l~~l-~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~ 179 (311)
++..++++++.+.||..+.+.+ +++ +|++|++..+.+. ++..+ ....++||+|+||.. |+ +|.++.
T Consensus 107 ~~~~~~~~~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~~~-~~~~~--~~~~~g~P~vvKp~~--g~-gg~Gv~ 173 (433)
T 2dwc_A 107 FVVPNARATWIAMHRERLRETLVKEA-------KVPTSRYMYATTL-DELYE--ACEKIGYPCHTKAIM--SS-SGKGSY 173 (433)
T ss_dssp CBSSCHHHHHHHHCHHHHHHHHHHTS-------CCCCCCEEEESSH-HHHHH--HHHHHCSSEEEEECC--C-------E
T ss_pred eeCCCHHHHHHhhCHHHHHHHHHHhc-------CCCCCCeeEeCCH-HHHHH--HHHhcCCCEEEEECC--Cc-CCCCeE
Confidence 7788999999999999999888 664 8999999988532 11212 123578999999986 33 468899
Q ss_pred EEcCccccccC-----------CCCeEEEecccCCCeEEEEEEEC-----CEEEEEEEecCCCCccccccccceeeeecc
Q 021495 180 LAYDRFSLSEL-----------EPPMLLQEFVNHGGILFKIYIIG-----ETIKVVRRFSLPNVSKRELAKVVSVFRFPR 243 (311)
Q Consensus 180 lv~~~~~L~~l-----------~~P~vvQEfInH~G~~~KVyVVG-----d~v~~~~R~Slpn~~~~~~~~~~~~~~~~~ 243 (311)
++.++++|.+. ..++++||||+. |.++.|.+++ +++.+..-....+ ... .+.+ ..
T Consensus 174 ~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~~~G~~~~~~~~~~~~-----~~~-~~~~--~~ 244 (433)
T 2dwc_A 174 FVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-DVEVTELAVRHFDENGEIVTTFPKPVGH-----YQI-DGDY--HA 244 (433)
T ss_dssp EECSGGGHHHHHHC---------CCEEEEECCCC-SEEEEECCEEEECTTSCEEEEEECCEEE-----EES-SSSE--EE
T ss_pred EECCHHHHHHHHHHHHhhcccCCCCEEEEccCCC-CeeEEEEEEecccCCCCEeEEEecccce-----EEE-cCEE--EE
Confidence 99999887541 368999999974 8999999884 2321111111000 000 0001 00
Q ss_pred cccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 244 VSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 244 vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL-~lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
+ ..| +.+++ .+.++++|.++.++||+ .++++|++++.+ ++|++|||.-||.
T Consensus 245 -----~------~~p--~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~ 298 (433)
T 2dwc_A 245 -----S------WQP--AEISEKAEREVYRIAKRITDVLGGLGIFGVEMFVKGD---KVWANEVSPRPHD 298 (433)
T ss_dssp -----E------EES--CCCCHHHHHHHHHHHHHHHHHHCSSEECEEEEEEETT---EEEEEEEESSCCG
T ss_pred -----E------EcC--CCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---cEEEEEEeCCcCC
Confidence 0 001 11222 35689999999999999 566799999853 5899999998873
No 36
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.58 E-value=1.8e-14 Score=138.29 Aligned_cols=225 Identities=17% Similarity=0.172 Sum_probs=141.0
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCC---------------C---------CCCCccEEEEecCChhHHHHHHHHHHhCCCe
Q 021495 45 QPKLEILARNKGISFVAIDQNRPL---------------S---------DQGPFDVVLHKLSGMEWCKIIEDYRQKHPEV 100 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl---------------~---------~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v 100 (311)
...+++.|++.|+..+.+|...+- . .+..+|+|+--..+ .....+.+..++ -++
T Consensus 19 ~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~v~~~~~~-~~~~~~a~~~~~-~gl 96 (403)
T 4dim_A 19 QLGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATCCLD-TGIVSLARICDK-ENL 96 (403)
T ss_dssp GHHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSEEECCSCS-TTHHHHHHHHHH-HTC
T ss_pred HHHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCEEEeCCcc-hhHHHHHHHHHH-cCc
Confidence 345888899999999999853211 0 12346766532222 212223333322 234
Q ss_pred eeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEE
Q 021495 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (311)
Q Consensus 101 ~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~l 180 (311)
.-.++++++.+.||..|.+.++++ +|++|++..+.+ .++..+ ....++||+|+||..++ +|.+|.+
T Consensus 97 -~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~-~~~~~~--~~~~~g~P~vvKp~~g~---gg~Gv~~ 162 (403)
T 4dim_A 97 -VGLNEEAAIMCGDKYKMKEAFKKY-------NVNTARHFVVRN-ENELKN--ALENLKLPVIVKATDLQ---GSKGIYI 162 (403)
T ss_dssp -SSCCHHHHHHHHCHHHHHHHHHHH-------TCCCCCEECCCS-HHHHHH--HHHTSCSSEEEECSCC--------CEE
T ss_pred -CCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEeCC-HHHHHH--HHhcCCCCEEEEECCCC---CCCCEEE
Confidence 367899999999999999999886 899999987742 111111 23578999999999844 4688999
Q ss_pred EcCccccccC---------CCCeEEEecccCCCeEEEEEE--ECCEEEEEEEecCCCCccccccccceeeeecccccccc
Q 021495 181 AYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYI--IGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAA 249 (311)
Q Consensus 181 v~~~~~L~~l---------~~P~vvQEfInH~G~~~KVyV--VGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~ 249 (311)
+.++++|.+. ..++++||||+ |..|-|.+ .++++.+..... + .... +.+ + ... +
T Consensus 163 v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~e~sv~~~~~~g~~~~~~~~~--~-----~~~~-~~~-~--~~~-~- 227 (403)
T 4dim_A 163 AKKEEEAIDGFNETMNLTKRDYCIVEEFIE--GYEFGAQAFVYKNDVLFVMPHG--D-----ETYM-SHT-A--VPV-G- 227 (403)
T ss_dssp ESSHHHHHHHHHHHHHHCSSSCCEEEECCC--SEEEEEEEEEETTEEEEEEEEE--E-----EEEE-SSS-E--EEE-E-
T ss_pred ECCHHHHHHHHHHHHhcCcCCcEEEEEccC--CcEEEEEEEEECCEEEEEEEec--c-----eecc-CCC-C--cce-e-
Confidence 9999988652 46899999996 56666554 567766532110 0 0000 000 0 000 0
Q ss_pred cCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCc--EeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 250 SADDADLDPGIAELPP--RPLLERLARELRHRLGLR--LFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 250 ~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~--lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
...| ..+++ .+.+.++|.++.++||+. .+++|+++++ | ++|++|||.-||-
T Consensus 228 -----~~~p--~~l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~~--~-~~~~iEiN~R~~~ 282 (403)
T 4dim_A 228 -----HYVP--LDVKDDIIEKTKTEVKKAIKALGLNNCAVNVDMILKD--N-EVYIIELTGRVGA 282 (403)
T ss_dssp -----EEES--CCSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEET--T-EEEEEEEESSCCS
T ss_pred -----EEeC--CCCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEEEC--C-cEEEEEEcCCCCC
Confidence 0001 11222 467889999999999998 5789999973 4 6999999998873
No 37
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.57 E-value=4.2e-14 Score=138.03 Aligned_cols=235 Identities=12% Similarity=0.111 Sum_probs=152.6
Q ss_pred ccEEEEEEeCchhhhccchhHHHHHHHhCCCeEEEeeCCCCC-----CC---CC-------------CccEEEEecCChh
Q 021495 27 ERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPL-----SD---QG-------------PFDVVLHKLSGME 85 (311)
Q Consensus 27 ~~~~Vgy~~~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl-----~~---qg-------------p~DviLhK~t~~~ 85 (311)
+..+||..-.- .+...++..|++.|+.++.+|.+..- .+ .. ..|+|+--. +.
T Consensus 34 ~~~~IlIlG~G-----~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~~~--e~ 106 (419)
T 4e4t_A 34 PGAWLGMVGGG-----QLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVSTEF--EN 106 (419)
T ss_dssp TTCEEEEECCS-----HHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEECC--TT
T ss_pred CCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEEcc--Cc
Confidence 34455555432 23456888999999999999865311 01 01 246665211 11
Q ss_pred HHHHHHHHHHhCCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcC----CCCc
Q 021495 86 WCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAG----LKLP 161 (311)
Q Consensus 86 ~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~----l~fP 161 (311)
....+.+++++. ..+..++++++.+.||..+-+.++++ +|++|++..+++. +++.+. ... + ||
T Consensus 107 ~~~~~~~~l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~~~-~e~~~~--~~~~~~~~-~P 173 (419)
T 4e4t_A 107 VPAASLDFLART--TFVAPAGRCVAVAQDRIAEKRFIEAS-------GVPVAPHVVIESA-AALAAL--DDAALDAV-LP 173 (419)
T ss_dssp CCHHHHHHHHTT--SEESSCHHHHHHHTCHHHHHHHHHHT-------TCCBCCEEEECSH-HHHHTS--CHHHHHTT-CS
T ss_pred CCHHHHHHHHcc--CCcCCCHHHHHHhcCHHHHHHHHHHc-------CcCCCCeEEECCH-HHHHHH--HHhhcccc-CC
Confidence 112233344454 57889999999999999999999885 8999999988532 111111 123 7 99
Q ss_pred EEEeeCcCCCCCcceeeEEEcCccccccC-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEEecCCCCcccccc
Q 021495 162 LVAKPLVVDGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELA 233 (311)
Q Consensus 162 ~VvKP~~a~GS~~sh~m~lv~~~~~L~~l-----~~P~vvQEfInH~G~~~KVyVVGd---~v~~~~R~Slpn~~~~~~~ 233 (311)
+|+||.. .|+ ++.++.++.++++|.+. +.++++||||+. ++.+.|.++++ .+.+ +|-. +..
T Consensus 174 ~VvKp~~-~g~-~G~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~-~~Eisv~v~~~~~G~~~~-----~~~~---e~~ 242 (419)
T 4e4t_A 174 GILKTAR-LGY-DGKGQVRVSTAREARDAHAALGGVPCVLEKRLPL-KYEVSALIARGADGRSAA-----FPLA---QNV 242 (419)
T ss_dssp EEEEESS-SCC-TTTTEEEECSHHHHHHHHHHTTTCCEEEEECCCE-EEEEEEEEEECTTSCEEE-----CCCE---EEE
T ss_pred EEEEecC-CCC-CCCceEEECCHHHHHHHHHhcCCCcEEEeecCCC-CeEEEEEEEEcCCCCEEE-----EeCe---EEE
Confidence 9999973 244 47899999999887652 478999999973 78999999954 2322 1211 100
Q ss_pred ccceeeeecccccccccCCCCCCCCCCCC-CCC--hHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 234 KVVSVFRFPRVSSAAASADDADLDPGIAE-LPP--RPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 234 ~~~~~~~~~~vs~~~~~a~~~~~~p~~~~-~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
...+.+.. + ..| +. +++ .+.++++|.++.++||+. ++++|++++. +| ++||+|||.=||
T Consensus 243 ~~~g~~~~---~----------~~P--a~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~-dG-~~~v~EiNpR~~ 305 (419)
T 4e4t_A 243 HHNGILAL---T----------IVP--APAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLE-DG-SFVANEMAPRPH 305 (419)
T ss_dssp EETTEEEE---E----------EES--CTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TC-CEEEEEEESSCC
T ss_pred eeCCeEEE---E----------EcC--CCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEeC-CC-CEEEEEEeCCCC
Confidence 00112210 0 001 11 222 467889999999999997 7789999985 35 699999999887
No 38
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.57 E-value=5.9e-14 Score=131.34 Aligned_cols=178 Identities=17% Similarity=0.230 Sum_probs=120.7
Q ss_pred CCccEEEEecCChh-HHHHHHHHHHhCCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcc
Q 021495 72 GPFDVVLHKLSGME-WCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 150 (311)
Q Consensus 72 gp~DviLhK~t~~~-~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~ 150 (311)
.++|+++--..+.+ ..+.+.+.++. ++..+.+++++++.+.||..|.+.+++ +|++|++..
T Consensus 68 ~~~D~~~~i~~~ed~~l~~~~~~l~~-~g~~~g~~~~~~~~~~dK~~~~~~l~~--------Gip~p~~~~--------- 129 (305)
T 3df7_A 68 EKSDAFLIIAPEDDFLLYTLTKKAEK-YCENLGSSSRAIAVTSDKWELYKKLRG--------EVQVPQTSL--------- 129 (305)
T ss_dssp TTCSEEEEECCCGGGHHHHHHHHHHT-TSEESSCCHHHHHHHTSHHHHHHHHTT--------TSCCCCEES---------
T ss_pred HhcCEEEEEccCCcHHHHHHHHHHHh-cCCccCCCHHHHHHhcCHHHHHHHHHh--------CCCCCCEec---------
Confidence 46787665544432 23344444444 568899999999999999999999853 688998873
Q ss_pred hhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccCCCCeEEEecccCCCeEEEEEEECC-EEEEEEEecCCCCcc
Q 021495 151 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGE-TIKVVRRFSLPNVSK 229 (311)
Q Consensus 151 ~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l~~P~vvQEfInH~G~~~KVyVVGd-~v~~~~R~Slpn~~~ 229 (311)
..++||+|+||..++| |.++.++.+ ...++++||||+ |+++.|.++++ .+....+..
T Consensus 130 -----~~~~~P~vvKP~~g~g---s~Gv~~v~~------~~~~~lvEe~I~--G~e~sv~v~~g~~~~~~~~~~------ 187 (305)
T 3df7_A 130 -----RPLDCKFIIKPRTACA---GEGIGFSDE------VPDGHIAQEFIE--GINLSVSLAVGEDVKCLSVNE------ 187 (305)
T ss_dssp -----SCCSSSEEEEESSCC-------CBCCSS------CCTTEEEEECCC--SEEEEEEEEESSSEEEEEEEE------
T ss_pred -----ccCCCCEEEEeCCCCC---CCCEEEEec------CCCCEEEEeccC--CcEEEEEEEeCCeEEEEEEee------
Confidence 2578999999998443 577888877 567899999996 99999999964 333322110
Q ss_pred ccccccceeeeecccccccccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHh-CCc-EeEEEEEEeCCCCCeEEEEEec
Q 021495 230 RELAKVVSVFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRL-GLR-LFNIDMIREHGMRDVFYVIDIN 305 (311)
Q Consensus 230 ~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~L-GL~-lfG~Dvi~~~~tg~~~~ViDVN 305 (311)
.+... +.+. .+ ..| +.++ ..+.++++|.++.++| |+. ++++|++++ | ++|++|||
T Consensus 188 -~~~~~---~~~~----g~-------~~p--~~l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~---~-~~~viEiN 246 (305)
T 3df7_A 188 -QIINN---FRYA----GA-------VVP--ARISDEVKREVVEEAVRAVECVEGLNGYVGVDIVYS---D-QPYVIEIN 246 (305)
T ss_dssp -EEEET---TEEE----EE-------EES--CCCCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEEES---S-SEEEEEEE
T ss_pred -EeccC---ceec----cc-------ccc--CCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEC---C-CEEEEEEc
Confidence 00000 1110 00 001 1122 1467899999999999 975 568999995 3 48999999
Q ss_pred CCCCC
Q 021495 306 YFPGR 310 (311)
Q Consensus 306 yfPG~ 310 (311)
.-||.
T Consensus 247 pR~~~ 251 (305)
T 3df7_A 247 ARLTT 251 (305)
T ss_dssp SSCCG
T ss_pred CCCCC
Confidence 99985
No 39
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.55 E-value=2.5e-13 Score=130.21 Aligned_cols=219 Identities=9% Similarity=0.033 Sum_probs=145.3
Q ss_pred hhHHHHHHHhCCCeEEEeeCCC--CCCCCC-CccEEEEecCChhHHHHHHHHHHhCCCeeeeCchhHHHHhcCHHHHHHH
Q 021495 45 QPKLEILARNKGISFVAIDQNR--PLSDQG-PFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQD 121 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~--pl~~qg-p~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~ 121 (311)
.+.+...|+++|+++ +|.+. |-.-.+ ..|+|.--.-.. ..+.++ ++++. + .|..++++++.+.||..+-+.
T Consensus 13 g~m~~~aa~~lG~~v--~~~~~~a~~~~~~l~~d~it~e~e~v-~~~~l~-~l~~~-~-~v~p~~~a~~~~~DK~~~k~~ 86 (355)
T 3eth_A 13 GRMLRQAGEPLGIAV--WPVGLDAEPAAVPFQQSVITAEIERW-PETALT-RQLAR-H-PAFVNRDVFPIIADRLTQKQL 86 (355)
T ss_dssp HHHHHHHHGGGTCEE--EEECTTCCGGGCCCTTSEEEESCSCC-CCCHHH-HHHHT-C-TTBTTTTHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHCCCEE--ECCCCCCCceEEcccCCEEEECcCCc-CHHHHH-HHHhc-C-CcCCCHHHHHHhcCHHHHHHH
Confidence 345778899999999 55543 211111 456665332211 011222 23333 3 788999999999999999999
Q ss_pred HHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcC--cccccc--CCCCeEEE
Q 021495 122 VADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD--RFSLSE--LEPPMLLQ 197 (311)
Q Consensus 122 l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~--~~~L~~--l~~P~vvQ 197 (311)
++++ +|++|++..+++. +++.+ ....++||+|+||.. .|+ +++++.+|.+ +++|.+ ++ ++++|
T Consensus 87 l~~~-------GIptp~~~~v~~~-~e~~~--~~~~~G~P~VvKp~~-~G~-~GkGv~~v~~~~~~el~~a~~~-~vivE 153 (355)
T 3eth_A 87 FDKL-------HLPTAPWQLLAER-SEWPA--VFDRLGELAIVKRRT-GGY-DGRGQWRLRANETEQLPAECYG-ECIVE 153 (355)
T ss_dssp HHHT-------TCCBCCEEEECCG-GGHHH--HHHHHCSEEEEEESS-SCC-TTTTEEEEETTCGGGSCGGGTT-TEEEE
T ss_pred HHHC-------ccCCCCEEEECCH-HHHHH--HHHHcCCCEEEEecC-CCC-CCCeEEEEcCCCHHHHHHHhhC-CEEEE
Confidence 9875 8999999988532 22222 234578999999987 244 4799999999 888865 34 79999
Q ss_pred ecccCCCeEEEEEEECC---EEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHH
Q 021495 198 EFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERL 272 (311)
Q Consensus 198 EfInH~G~~~KVyVVGd---~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~l 272 (311)
|||+ .|+.+-|.++++ .+.+ .|-. +.....+.+... .. ++.+++ .+.++++
T Consensus 154 e~I~-~~~Eisv~v~~~~~G~~~~-----~p~~---e~~~~~g~~~~~-------------~~--pa~l~~~~~~~~~~~ 209 (355)
T 3eth_A 154 QGIN-FSGEVSLVGARGFDGSTVF-----YPLT---HNLHQDGILRTS-------------VA--FPQANAQQQARAEEM 209 (355)
T ss_dssp ECCC-CSEEEEEEEEECTTSCEEE-----CCCE---EEEEETTEEEEE-------------EE--CSSCCHHHHHHHHHH
T ss_pred EccC-CCcEEEEEEEEcCCCCEEE-----ECCE---EEEeeCCeEEEE-------------EC--CCCCCHHHHHHHHHH
Confidence 9997 489999999954 3322 2211 111111222211 00 111222 4678999
Q ss_pred HHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 273 ARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 273 A~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
|.++.++||.. ++++|+++++ + ++||+|||.=||
T Consensus 210 a~~i~~aLg~~G~~~vEf~~~~--~-~~~v~EinpR~~ 244 (355)
T 3eth_A 210 LSAIMQELGYVGVMAMECFVTP--Q-GLLINELAPRVH 244 (355)
T ss_dssp HHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEESSCC
T ss_pred HHHHHHHCCCeeEEEEEEEEEC--C-cEEEEEeeCCCC
Confidence 99999999996 6789999984 3 699999999886
No 40
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.54 E-value=4.6e-13 Score=124.49 Aligned_cols=226 Identities=16% Similarity=0.187 Sum_probs=133.8
Q ss_pred chhHHHHHHHhCCCeEEEeeCCCCC--------CC---CCC-c---------cEEEEecCChhHHHHHHHHHHhCCCeee
Q 021495 44 LQPKLEILARNKGISFVAIDQNRPL--------SD---QGP-F---------DVVLHKLSGMEWCKIIEDYRQKHPEVTI 102 (311)
Q Consensus 44 ~~~~l~~~~~~~gi~~v~iD~~~pl--------~~---qgp-~---------DviLhK~t~~~~~~~l~~y~~~hP~v~V 102 (311)
....+.+.++++|++++.+|.+... .+ ..+ + |+|+ ...+.......+.+ +..++++
T Consensus 12 ~~~~l~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~d~i~--~~~e~~~~~~~~~l-e~~g~~~ 88 (334)
T 2r85_A 12 SALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVV--PTGSFVAHLGIELV-ENMKVPY 88 (334)
T ss_dssp THHHHHHHHHHTTCCEEEESCGGGHHHHHTTSCCCSEEECSSCCHHHHHHTTEEEC--CCTTHHHHHCHHHH-HTCCSCB
T ss_pred hHHHHHHHHHhCCCEEEEEECCCCCcccccccccCceEecCCcChHHhcccCCEEE--ECcchhhhhHHHHH-HHcCCCc
Confidence 3446888999999999999987421 11 112 2 5553 11211111111122 3467888
Q ss_pred eCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEc
Q 021495 103 LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY 182 (311)
Q Consensus 103 iDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~ 182 (311)
++++++++.+.||..|.+.|+++ +|++|++ +. +. ..+.||+|+||..++ +|.++.++.
T Consensus 89 ~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~--~~-~~---------~~l~~P~vvKP~~g~---~s~Gv~~v~ 146 (334)
T 2r85_A 89 FGNKRVLRWESDRNLERKWLKKA-------GIRVPEV--YE-DP---------DDIEKPVIVKPHGAK---GGKGYFLAK 146 (334)
T ss_dssp BSCTTHHHHHHSHHHHHHHHHHT-------TCCCCCB--CS-CG---------GGCCSCEEEEECC-------TTCEEES
T ss_pred cCCHHHHHHHHhHHHHHHHHHHc-------CCCCCCc--cC-Ch---------HHcCCCEEEEeCCCC---CCCCEEEEC
Confidence 89999999999999999988875 7899998 32 11 135699999999844 357899999
Q ss_pred CccccccC----------C--CCeEEEecccCCCeEEEEEE----ECCEEEE--E-EEecCCCCccccccccceeeeecc
Q 021495 183 DRFSLSEL----------E--PPMLLQEFVNHGGILFKIYI----IGETIKV--V-RRFSLPNVSKRELAKVVSVFRFPR 243 (311)
Q Consensus 183 ~~~~L~~l----------~--~P~vvQEfInH~G~~~KVyV----VGd~v~~--~-~R~Slpn~~~~~~~~~~~~~~~~~ 243 (311)
++++|... . .++++||||+ |..+-+.+ +++++.+ . .|.... .+ +++....
T Consensus 147 ~~~el~~~~~~~~~~~~~~~~~~~lvee~i~--G~e~~~~~~~~~~~~~v~~~~~~g~~~~~---~~------~~~~~~~ 215 (334)
T 2r85_A 147 DPEDFWRKAEKFLGIKRKEDLKNIQIQEYVL--GVPVYPHYFYSKVREELELMSIDRRYESN---VD------AIGRIPA 215 (334)
T ss_dssp SHHHHHHHHHHHHCCCSGGGCCSEEEEECCC--CEEEEEEEEEETTTTEEEEEEEEEEEEEE---GG------GGGGSCH
T ss_pred CHHHHHHHHHHHHhhcccCCCCcEEEEeccC--CceeEEEEeecCcCceeeeeeeccEEEec---cC------ccccccc
Confidence 99887542 2 6899999995 77765322 1222211 1 111100 00 0110000
Q ss_pred cccc----c-ccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHh-----CC-cEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 244 VSSA----A-ASADDADLDPGIAELP--PRPLLERLARELRHRL-----GL-RLFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 244 vs~~----~-~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~L-----GL-~lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
..+. + .....+.. | +.++ ..+.++++|.++.++| +. ..+++|++++. +| ++|++|||.-||.
T Consensus 216 ~~~~~~~~~~~~~~~g~~-p--~~l~~~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~-~g-~~~viEiN~R~g~ 290 (334)
T 2r85_A 216 KDQLEFDMDITYTVIGNI-P--IVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTP-DL-EFVVFEISARIVA 290 (334)
T ss_dssp HHHTTSCCCCCEEEEEEE-E--CCCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECT-TS-CEEEEEEECSCCG
T ss_pred ccccccccCCceeeeCCC-C--cccCHHHHHHHHHHHHHHHHHHHhhcccccccEEEEEEECC-CC-CEEEEEEeCCcCC
Confidence 0000 0 00000000 1 1122 2577899999999999 44 46689999975 34 6899999998874
No 41
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.53 E-value=9.4e-14 Score=129.59 Aligned_cols=175 Identities=18% Similarity=0.191 Sum_probs=105.0
Q ss_pred HHHHHHhCCCee-eeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCc
Q 021495 90 IEDYRQKHPEVT-ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLV 168 (311)
Q Consensus 90 l~~y~~~hP~v~-ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~ 168 (311)
+.+.++. .+++ +.+++++++.+.||..|.+.++++ +|++|++.... ++..+.+....++||+|+||..
T Consensus 90 ~~~~l~~-~g~~~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~---~~~~~~~~~~~~~~P~vvKp~~ 158 (331)
T 2pn1_A 90 ATERFQA-IGVTVIVSPYAACELCFDKYTMYEYCLRQ-------GIAHARTYATM---ASFEEALAAGEVQLPVFVKPRN 158 (331)
T ss_dssp THHHHHT-TTCEECCCCHHHHHHHHBHHHHHHHHHHH-------TCCCCCEESSH---HHHHHHHHTTSSCSCEEEEESB
T ss_pred HHHHHHh-CCcEEecCCHHHHHHhhCHHHHHHHHHHc-------CCCCCcEEecH---HHhhhhhhcccCCCCEEEEeCC
Confidence 3444433 4675 468899999999999999999886 78999986521 1111211124789999999988
Q ss_pred CCCCCcceeeEEEcCccccccC---CCCeEEEecccCCCeEEEEEEECC----EEE-EEEEecCCCCccccccccceeee
Q 021495 169 VDGSAKSHELFLAYDRFSLSEL---EPPMLLQEFVNHGGILFKIYIIGE----TIK-VVRRFSLPNVSKRELAKVVSVFR 240 (311)
Q Consensus 169 a~GS~~sh~m~lv~~~~~L~~l---~~P~vvQEfInH~G~~~KVyVVGd----~v~-~~~R~Slpn~~~~~~~~~~~~~~ 240 (311)
++| |.++.++.++++|.+. ..++++||||+ |..+.|.+++| ++. +..+..+. . ..|...
T Consensus 159 g~g---~~gv~~v~~~~el~~~~~~~~~~lvee~i~--G~e~~v~~~~d~~~G~~~~~~~~~~~~------~--~~g~~~ 225 (331)
T 2pn1_A 159 GSA---SIEVRRVETVEEVEQLFSKNTDLIVQELLV--GQELGVDAYVDLISGKVTSIFIKEKLT------M--RAGETD 225 (331)
T ss_dssp C--------------------------CEEEEECCC--SEEEEEEEEECTTTCCEEEEEEEEEEE------E--ETTEEE
T ss_pred CCC---CCCeEEeCCHHHHHHHHHhCCCeEEEecCC--CcEEEEEEEEecCCCeEEEEEEEEEEE------e--cCCcee
Confidence 443 6889999999888764 46899999995 79999998873 443 33332110 0 001000
Q ss_pred ecccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecC-CCCC
Q 021495 241 FPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINY-FPGR 310 (311)
Q Consensus 241 ~~~vs~~~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNy-fPG~ 310 (311)
. + + .+..+.+.++|.++.++||+. ++++|++.+ +| +++++|||. |||.
T Consensus 226 ~---~------------~----~~~~~~~~~~~~~~~~~lg~~G~~~vd~~~~--~g-~~~~iEiN~R~~g~ 275 (331)
T 2pn1_A 226 K---S------------R----SVLRDDVFELVEHVLDGSGLVGPLDFDLFDV--AG-TLYLSEINPRFGGG 275 (331)
T ss_dssp E---E------------E----EECCHHHHHHHHHHHTTTCCCEEEEEEEEEE--TT-EEEEEEEESSCCTT
T ss_pred E---e------------E----EeccHHHHHHHHHHHHHhCCcceEEEEEEEc--CC-CEEEEEEeCCCCCc
Confidence 0 0 0 012366899999999999994 668999954 34 699999999 6774
No 42
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.47 E-value=5.8e-13 Score=130.70 Aligned_cols=185 Identities=9% Similarity=0.077 Sum_probs=119.1
Q ss_pred HHHHHHhCCCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCc
Q 021495 90 IEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLV 168 (311)
Q Consensus 90 l~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~ 168 (311)
+.+.+++ -+++++ .++++++.+.||..+.+.++++ +|++|++..+.+ .++..+ ....++||+|+||..
T Consensus 99 ~~~~l~~-~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~-------GIp~p~~~~~~~-~~ea~~--~~~~~g~PvVvKp~~ 167 (442)
T 3lp8_A 99 LSDALTE-EGILVFGPSKAAARLESSKGFTKELCMRY-------GIPTAKYGYFVD-TNSAYK--FIDKHKLPLVVKADG 167 (442)
T ss_dssp HHHHHHH-TTCEEESCCHHHHHHHHCHHHHHHHHHHH-------TCCBCCEEEESS-HHHHHH--HHHHSCSSEEEEESS
T ss_pred HHHHHHh-cCCcEecCCHHHHHHhhCHHHHHHHHHHC-------CCCCCCEEEECC-HHHHHH--HHHHcCCcEEEeECC
Confidence 4444444 478887 8999999999999999999886 899999988853 222212 123578999999986
Q ss_pred CCCCCcceeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECC--EEEEE--EEecCCCCcccc
Q 021495 169 VDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE--TIKVV--RRFSLPNVSKRE 231 (311)
Q Consensus 169 a~GS~~sh~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd--~v~~~--~R~Slpn~~~~~ 231 (311)
+. .|.++.++.+++++.+. ..++++||||+ |.++.|.++.| .+... .+.- .
T Consensus 168 ~~---gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~~~~~-~------ 235 (442)
T 3lp8_A 168 LA---QGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE--GKEISFFTLVDGSNPVILGVAQDY-K------ 235 (442)
T ss_dssp CC---TTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEESSCEEEEEEEEEC-C------
T ss_pred CC---CCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec--CcEEEEEEEECCCeEEEeEEeEee-e------
Confidence 33 46889999999887531 25899999996 89999999854 44321 1111 1
Q ss_pred ccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHH----HHHHHHHhCCcEeE---EEEEEeCCCCCeEEEE
Q 021495 232 LAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERL----ARELRHRLGLRLFN---IDMIREHGMRDVFYVI 302 (311)
Q Consensus 232 ~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~l----A~~l~~~LGL~lfG---~Dvi~~~~tg~~~~Vi 302 (311)
..++++.-... ...+...|.. .+++ .+.+.+. +.++.+++|+.+.| +|++++. +| ++|+
T Consensus 236 -----~~~~~~~g~~~---gg~g~~~P~~-~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~~-~g--~~vi 303 (442)
T 3lp8_A 236 -----TIGDNNKGPNT---GGMGSYSKPN-IITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKK-NE--PKLL 303 (442)
T ss_dssp -----EEEGGGEEEEC---SCSEEEECTT-SSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEE
T ss_pred -----ecccCCCCCCC---CCcEEEeeCC-CCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--eEEE
Confidence 01111100000 0000111110 0121 2334443 66677899996544 9999985 33 8999
Q ss_pred EecCCCC
Q 021495 303 DINYFPG 309 (311)
Q Consensus 303 DVNyfPG 309 (311)
|+|.-||
T Consensus 304 EiN~R~g 310 (442)
T 3lp8_A 304 EYNVRFG 310 (442)
T ss_dssp EEESSCC
T ss_pred EEecCCC
Confidence 9999988
No 43
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.47 E-value=1.1e-12 Score=130.19 Aligned_cols=203 Identities=13% Similarity=0.117 Sum_probs=134.5
Q ss_pred hHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeeeCchhHHHHhcCHHHHHHHHHhc
Q 021495 46 PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADL 125 (311)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l 125 (311)
+.++++|++.|++.+.. +++ .....+.+..++ -+++ -.++++++.+.||..+.+.++++
T Consensus 92 ~~I~~~a~~~~id~Vip------------------~sE-~~l~~~a~~~e~-~Gi~-g~~~~ai~~~~DK~~~k~~l~~~ 150 (474)
T 3vmm_A 92 EQIVKVAEMFGADAITT------------------NNE-LFIAPMAKACER-LGLR-GAGVQAAENARDKNKMRDAFNKA 150 (474)
T ss_dssp HHHHHHHHHTTCSEEEE------------------SCG-GGHHHHHHHHHH-TTCC-CSCHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEE------------------CCc-ccHHHHHHHHHH-cCCC-CCCHHHHHHhhCHHHHHHHHHHc
Confidence 36788999998775443 222 222233333333 3566 78899999999999999999885
Q ss_pred cccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc----------------
Q 021495 126 NLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE---------------- 189 (311)
Q Consensus 126 ~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~---------------- 189 (311)
+|++|++..+.+. ++..+ ....++||+|+||..++| |.+|.++.++++|.+
T Consensus 151 -------GIpvp~~~~v~s~-ee~~~--~~~~lg~PvVVKP~~g~g---g~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~ 217 (474)
T 3vmm_A 151 -------GVKSIKNKRVTTL-EDFRA--ALEEIGTPLILKPTYLAS---SIGVTLITDTETAEDEFNRVNDYLKSINVPK 217 (474)
T ss_dssp -------TSCCCCEEEECSH-HHHHH--HHHHSCSSEEEEESSCCT---TTTCEEECCTTSHHHHHHHHHHHHTTSCCCT
T ss_pred -------CCCCCCeEEECCH-HHHHH--HHHHcCCCEEEEECCCCc---CceEEEECCHHHHHHHHHHHHHHHhhccccc
Confidence 8999999888532 11111 234689999999998544 578999999988753
Q ss_pred ---CCCCeEEEecccCCC------------eEEEEEEECCEEEEE---EEecCCCCccccccccceeeeecccccccccC
Q 021495 190 ---LEPPMLLQEFVNHGG------------ILFKIYIIGETIKVV---RRFSLPNVSKRELAKVVSVFRFPRVSSAAASA 251 (311)
Q Consensus 190 ---l~~P~vvQEfInH~G------------~~~KVyVVGd~v~~~---~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a 251 (311)
...++++||||...- ..+.+++.+++..++ .|.....+ .+ .
T Consensus 218 a~~~~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~dg~~~~v~i~~~~~~~~~--~~-----------~-------- 276 (474)
T 3vmm_A 218 AVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEYFPIAIHDKTPQIGF--TE-----------T-------- 276 (474)
T ss_dssp TCCCSCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEETTEEEEEEEEEECCCBTT--BC-----------C--------
T ss_pred cccCCCeEEEEeCCCCceeeeeecccccceeEEEEEEECCeEEEEEEEeeccCCCc--cc-----------e--------
Confidence 146899999997321 223446667765432 22110000 00 0
Q ss_pred CCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCcEeE--EEEEEeCCCCCeEEEEEecCCCC
Q 021495 252 DDADLDPGIAELPP--RPLLERLARELRHRLGLRLFN--IDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 252 ~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~lfG--~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
....| +.++. .+.+.++|.++.+++|+.-.+ +|++++. +| ++|++|||.=||
T Consensus 277 --~~~~P--a~l~~~~~~~l~~~a~~~~~alG~~g~~~~vef~~~~-dg-~~~~iEvNpR~~ 332 (474)
T 3vmm_A 277 --SHITP--SILDEEAKKKIVEAAKKANEGLGLQNCATHTEIKLMK-NR-EPGLIESAARFA 332 (474)
T ss_dssp --EEEES--CCCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEG-GG-EEEEEEEESSCC
T ss_pred --EEEEC--CCCCHHHHHHHHHHHHHHHHHcCCCCccEEEEEEEcC-CC-CEEEEEEeCCCC
Confidence 00011 11221 457899999999999999876 9999986 45 799999998775
No 44
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.46 E-value=4.5e-13 Score=144.61 Aligned_cols=229 Identities=17% Similarity=0.234 Sum_probs=146.3
Q ss_pred hHHHHHHHhCCCeEEEeeCCCCCC-------C-----------------CCCccEEEEecCChh---HHHHHHH--HHHh
Q 021495 46 PKLEILARNKGISFVAIDQNRPLS-------D-----------------QGPFDVVLHKLSGME---WCKIIED--YRQK 96 (311)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl~-------~-----------------qgp~DviLhK~t~~~---~~~~l~~--y~~~ 96 (311)
..+++.+++.|++++.+|.+.... + +..+|+|+--.-++. ....+.+ .+++
T Consensus 31 ~~~~~al~~~G~~vv~v~~~~~~~~~~~~~ad~~~i~p~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~ 110 (1073)
T 1a9x_A 31 AQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEE 110 (1073)
T ss_dssp HHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEECCCCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHHH
Confidence 357888999999999999764321 0 012455432221111 1111221 2322
Q ss_pred CCCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcc
Q 021495 97 HPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (311)
Q Consensus 97 hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~s 175 (311)
-++.++ .++++++.+.||..+.+.++++ +|++|++..+++. ++..+ ....++||+|+||..+.| |
T Consensus 111 -~gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~~~-~ea~~--~~~~ig~PvVvKp~~~~G---g 176 (1073)
T 1a9x_A 111 -FGVTMIGATADAIDKAEDRRRFDVAMKKI-------GLETARSGIAHTM-EEALA--VAADVGFPCIIRPSFTMG---G 176 (1073)
T ss_dssp -HTCEECSSCHHHHHHHHSHHHHHHHHHHT-------TCCCCSEEEESSH-HHHHH--HHHHHCSSEEEEETTCCT---T
T ss_pred -cCCeeeCCCHHHHHHhhCHHHHHHHHHHC-------CcCCCCEEEECCH-HHHHH--HHHHcCCCEEEEECCCCC---C
Confidence 368887 8899999999999999999885 8999999988532 11111 124578999999998555 4
Q ss_pred eeeEEEcCccccccC---------CCCeEEEecccCCCeEEEEEEECCE---EEEEEEecCCCCccccccccceeeeecc
Q 021495 176 HELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPR 243 (311)
Q Consensus 176 h~m~lv~~~~~L~~l---------~~P~vvQEfInH~G~~~KVyVVGd~---v~~~~R~Slpn~~~~~~~~~~~~~~~~~ 243 (311)
.++.++.|+++|.+. ..++++||||. +.+.|.|-|++|. +..+ .+..++....+.+
T Consensus 177 ~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~-G~~E~~v~v~~d~~g~~v~~--~~~e~~dp~~v~~--------- 244 (1073)
T 1a9x_A 177 SGGGIAYNREEFEEICARGLDLSPTKELLIDESLI-GWKEYEMEVVRDKNDNCIIV--CSIENFDAMGIHT--------- 244 (1073)
T ss_dssp TTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCT-TSEEEEEEEEECTTCCEEEE--EEEEESSCTTSCG---------
T ss_pred CceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccC-CCeEEEEEEEEeCCCCEEEE--EEEecccCCcccc---------
Confidence 678899999888652 34799999996 2379999999864 3221 0111110000000
Q ss_pred cccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCc--EeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 244 VSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLR--LFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 244 vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~--lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
.. + ....|.. .+++ .+.+.++|.++.++||+. .+++|++++..+| ++||||||.=+|
T Consensus 245 ---g~-s---~~~~Pa~-~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vdf~~~~~~g-~~~viEiNpR~~ 305 (1073)
T 1a9x_A 245 ---GD-S---ITVAPAQ-TLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNG-RLIVIEMNPRVS 305 (1073)
T ss_dssp ---GG-S---CEEESCC-SCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTC-CEEEEEEESSCC
T ss_pred ---Cc-E---EEEecCC-CCCHHHHHHHHHHHHHHHHHcCcccCceEEEEEEECCCC-CEEEEEecCCCC
Confidence 00 0 0001110 1222 457899999999999998 8889999986445 699999995443
No 45
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.46 E-value=6.2e-13 Score=130.02 Aligned_cols=214 Identities=11% Similarity=0.031 Sum_probs=132.1
Q ss_pred hHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeee-CchhHHHHhcCHHHHHHHHHh
Q 021495 46 PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVAD 124 (311)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~~ 124 (311)
..+.++|++++++++-+-. +......+.+.+++ -+++++ .++++++.+.||..|.+.+++
T Consensus 57 ~~l~~~a~~~~id~vv~g~------------------e~~l~~~~~~~l~~-~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~ 117 (431)
T 3mjf_A 57 AGLLAFAQSHDIGLTIVGP------------------EAPLVIGVVDAFRA-AGLAIFGPTQAAAQLEGSKAFTKDFLAR 117 (431)
T ss_dssp HHHHHHHHHTTEEEEEECS------------------HHHHHTTHHHHHHH-TTCCEESCCHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCEEEECC------------------chHHHHHHHHHHHh-cCCCeeCCCHHHHHHhhCHHHHHHHHHH
Confidence 4577788887777665421 11112234444444 478887 899999999999999999988
Q ss_pred ccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC-------------C
Q 021495 125 LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------------E 191 (311)
Q Consensus 125 l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l-------------~ 191 (311)
+ +|++|++..+.+ .++..+. ...++||+|+||..+. .|.++.++.+++++.+. .
T Consensus 118 ~-------GIptp~~~~~~~-~~ea~~~--~~~~g~PvVvKp~~~~---gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~ 184 (431)
T 3mjf_A 118 H-------NIPSAEYQNFTD-VEAALAY--VRQKGAPIVIKADGLA---AGKGVIVAMTQEEAETAVNDMLAGNAFGDAG 184 (431)
T ss_dssp T-------TCSBCCEEEESC-HHHHHHH--HHHHCSSEEEEESSSC---TTCSEEEECSHHHHHHHHHHHHTTHHHHCCC
T ss_pred c-------CCCCCCeEeeCC-HHHHHHH--HHHcCCeEEEEECCCC---CCCcEEEeCCHHHHHHHHHHHHhhccccCCC
Confidence 5 899999988853 2222221 2357899999998633 46889999999887541 3
Q ss_pred CCeEEEecccCCCeEEEEEEECC--EEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCC-CCC--h
Q 021495 192 PPMLLQEFVNHGGILFKIYIIGE--TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAE-LPP--R 266 (311)
Q Consensus 192 ~P~vvQEfInH~G~~~KVyVVGd--~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~-~p~--~ 266 (311)
.++++||||. |.++.|.++.| .+... +-.. +. ...++++.-.+. ...+...| +. +++ .
T Consensus 185 ~~vlvEe~i~--G~E~sv~~~~dg~~~~~~-----~~~~--~~---~~~~~~~~g~~~---gg~g~~~P--~~~l~~~~~ 247 (431)
T 3mjf_A 185 HRIVVEEFLD--GEEASFIVMVDGENVLPM-----ATSQ--DH---KRVGDGDTGPNT---GGMGAYSP--APVVTDDVH 247 (431)
T ss_dssp CCEEEEECCC--SEEEEEEEEEESSCEEEC-----CCBE--EC---CEEETTTEEEEC---SCSEEEES--CTTSCHHHH
T ss_pred CeEEEEEeeC--CcEEEEEEEEcCCEEEEE-----EeeE--ec---eecccCCCCCCC---CCceEEee--CCCCCHHHH
Confidence 5899999996 89999999954 34321 1100 00 011111110000 00001112 11 221 2
Q ss_pred HHHHHH----HHHHHHHhCCcEeE---EEEEEeCCCCCeEEEEEecCCCCC
Q 021495 267 PLLERL----ARELRHRLGLRLFN---IDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 267 ~~~~~l----A~~l~~~LGL~lfG---~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
+.+.+. +.++.+++|+.+-| +|++++. +| ++++||+|.-||.
T Consensus 248 ~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~-~g-~~~viEiN~R~G~ 296 (431)
T 3mjf_A 248 QRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISA-DG-QPKVIEFNCRFGD 296 (431)
T ss_dssp HHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECT-TS-CEEEEEECGGGST
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeC-CC-CeEEEEEecCCCC
Confidence 223332 44556778986644 9999985 34 6999999999884
No 46
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.45 E-value=1.2e-12 Score=126.57 Aligned_cols=178 Identities=12% Similarity=0.120 Sum_probs=114.2
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcce
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh 176 (311)
-+++++ .++++++.+.||..+.+.++++ +|++|++..+.+ .++..+. ...++||+|+||..++ .|.
T Consensus 85 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~--~~~~~~PvvvKp~~g~---gg~ 151 (424)
T 2yw2_A 85 RGLKIFGPNKEAAKLEGSKAFAKTFMKKY-------GIPTARYEVFTD-FEKAKEY--VEKVGAPIVVKADGLA---AGK 151 (424)
T ss_dssp TTCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEESC-HHHHHHH--HHHHCSSEEEEESSCC---TTC
T ss_pred CCCcEECcCHHHHHHHhCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHH--HHHcCCcEEEEeCCCC---CCC
Confidence 478887 8899999999999999999885 899999988853 2222221 2347899999998743 468
Q ss_pred eeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEE--CCEEEEE--EEecCCCCccccccccceee
Q 021495 177 ELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYII--GETIKVV--RRFSLPNVSKRELAKVVSVF 239 (311)
Q Consensus 177 ~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVV--Gd~v~~~--~R~Slpn~~~~~~~~~~~~~ 239 (311)
++.++.++++|.+. ..++++||||+ |.++.|.++ |+.++.. .|.. ...+
T Consensus 152 Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~~~~~~~~~------------~~~~ 217 (424)
T 2yw2_A 152 GAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE--GEEASYIVMINGDRYVPLPTSQDH------------KRLL 217 (424)
T ss_dssp SEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTEEEECCCBEEC------------CEEE
T ss_pred CEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CcEEEEEEEEcCCEEEeecceeec------------cccc
Confidence 89999999887531 25899999996 889999888 4444321 1110 0111
Q ss_pred eecccccccccCCCCCCCCCCCC-CCC--hHHH-HHHHHHHHHHh---CCcE---eEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 240 RFPRVSSAAASADDADLDPGIAE-LPP--RPLL-ERLARELRHRL---GLRL---FNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 240 ~~~~vs~~~~~a~~~~~~p~~~~-~p~--~~~~-~~lA~~l~~~L---GL~l---fG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
++..-...+ ......| +. +++ .+.+ ++++.++.++| |+.+ +++|++++. +| +|++|||.-||
T Consensus 218 ~~~~~~~~g---~~~~~~p--~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g 289 (424)
T 2yw2_A 218 DEDKGPNTG---GMGAYSP--TPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITK-EG--PKVLEFNVRLG 289 (424)
T ss_dssp TTTEEEECS---CSEEEES--CTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEET-TE--EEEEEEESSCC
T ss_pred cCCCCCCCC---CCeeECC--CccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEEEEEecCCC
Confidence 110000000 0000111 11 222 2233 46777777776 5554 559999985 34 89999999887
Q ss_pred C
Q 021495 310 R 310 (311)
Q Consensus 310 ~ 310 (311)
.
T Consensus 290 ~ 290 (424)
T 2yw2_A 290 D 290 (424)
T ss_dssp T
T ss_pred C
Confidence 3
No 47
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.45 E-value=7.6e-13 Score=127.92 Aligned_cols=178 Identities=12% Similarity=0.108 Sum_probs=114.1
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcce
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh 176 (311)
-+++++ .++++++.+.||..+.+.++++ +|++|++..+.+ .++..+. ...++||+|+||..++ .|.
T Consensus 84 ~gi~~~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~-~~~~~~~--~~~~~~P~vvKp~~~~---gg~ 150 (417)
T 2ip4_A 84 RGLLLFGPTQKAAMIEGSKAFAKGLMERY-------GIPTARYRVFRE-PLEALAY--LEEVGVPVVVKDSGLA---AGK 150 (417)
T ss_dssp HTCCEESCCHHHHHHHHCHHHHHHHHHHT-------CCCBCCEEEESS-HHHHHHH--HHHHCSSEEEECTTSC---SST
T ss_pred CCCCEECccHHHHHHHcCHHHHHHHHHHc-------CCCCCCeeeeCC-HHHHHHH--HHHcCCCEEEEECCCC---CCC
Confidence 367777 8899999999999999999885 899999988753 2112221 2347899999998744 467
Q ss_pred eeEEEcCcccccc---------CCCCeEEEecccCCCeEEEEEEECC--EEEEE--EEecCCCCccccccccceeeeecc
Q 021495 177 ELFLAYDRFSLSE---------LEPPMLLQEFVNHGGILFKIYIIGE--TIKVV--RRFSLPNVSKRELAKVVSVFRFPR 243 (311)
Q Consensus 177 ~m~lv~~~~~L~~---------l~~P~vvQEfInH~G~~~KVyVVGd--~v~~~--~R~Slpn~~~~~~~~~~~~~~~~~ 243 (311)
++.++.++++|.+ .+.++++||||+ |.++.|.+++| .++.. .|..-+ .+.++.
T Consensus 151 Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~~~~~~~~~~~------------~~~~~~ 216 (417)
T 2ip4_A 151 GVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE--GEEATVLALTDGETILPLLPSQDHKR------------LLDGDQ 216 (417)
T ss_dssp TCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC--SCEEEEEEEESSSCEEECCCBEECCE------------EETTTE
T ss_pred CEEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc--CcEEEEEEEEeCCEEEEcchheechh------------hccCCC
Confidence 8999999988753 236899999996 88999999943 34331 121100 000000
Q ss_pred cccccccCCCCCCCCCCCCCCC--hHHH-HHHHHHHHHHh---CCc---EeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 244 VSSAAASADDADLDPGIAELPP--RPLL-ERLARELRHRL---GLR---LFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 244 vs~~~~~a~~~~~~p~~~~~p~--~~~~-~~lA~~l~~~L---GL~---lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
-...+ ......| +.+++ .+.+ ++++.++.++| |+. ++++|++++. +| +|++|||.-||.
T Consensus 217 ~~~~g---~~~~~~p--~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~ 284 (417)
T 2ip4_A 217 GPMTG---GMGAVAP--YPMDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTR-EG--PKVLEFNARFGD 284 (417)
T ss_dssp EEECS---CSEEEES--CCCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECS-SC--EEEEEEESSCCT
T ss_pred CCcCC---CCeeeeC--CCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeC-CC--eEEEEEecCCCC
Confidence 00000 0000112 12222 2233 55677777766 554 4569999975 34 899999998873
No 48
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.44 E-value=7.5e-13 Score=142.85 Aligned_cols=224 Identities=18% Similarity=0.285 Sum_probs=136.3
Q ss_pred hHHHHHHHhCCCeEEEeeCCCCCCC--CCC----------------------ccEEEEecCChhHHHHHHHHHHhCCCee
Q 021495 46 PKLEILARNKGISFVAIDQNRPLSD--QGP----------------------FDVVLHKLSGMEWCKIIEDYRQKHPEVT 101 (311)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl~~--qgp----------------------~DviLhK~t~~~~~~~l~~y~~~hP~v~ 101 (311)
..+...+++.|++.+.+|.+..... ..- .|.|+--.-+ .....+.+.+++ -+++
T Consensus 583 ~~~~~al~~~G~~vi~v~~np~~~s~~~~~ad~~~~~p~~~e~v~~i~~~e~~d~Vi~~~g~-~~~~~la~~Le~-~Gi~ 660 (1073)
T 1a9x_A 583 VHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGG-QTPLKLARALEA-AGVP 660 (1073)
T ss_dssp HHHHHHHHHTTCEEEEECCCTTSSTTSTTSSSEEECCCCSHHHHHHHHHHHCCSEEECSSST-HHHHTTHHHHHH-TTCC
T ss_pred HHHHHHHHhcCCEEEEEecCCcccccccccccEEEeccchhhhhhhhhhhcCcceEEeecCC-chHHHHHHHHHH-CCCC
Confidence 3467889999999999997642211 111 2222211111 111123333433 4788
Q ss_pred ee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEE
Q 021495 102 IL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (311)
Q Consensus 102 Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~l 180 (311)
++ .++++++.+.||..+.+.|.++ +|++|++..+.+. ++..+ ....++||+|+||..+. +|.+|.+
T Consensus 661 i~G~~~~ai~~~~DK~~~~~ll~~~-------GIp~P~~~~~~s~-eea~~--~~~~ig~PvvVKP~~~~---gG~Gv~i 727 (1073)
T 1a9x_A 661 VIGTSPDAIDRAEDRERFQHAVERL-------KLKQPANATVTAI-EMAVE--KAKEIGYPLVVRASYVL---GGRAMEI 727 (1073)
T ss_dssp BCSSCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEECCSH-HHHHH--HHHHHCSSEEEEC----------CEEE
T ss_pred eeCCCHHHHHHhhCHHHHHHHHHHc-------CcCCCCceEECCH-HHHHH--HHHHcCCCEEEEECCCC---CCCCeEE
Confidence 77 7899999999999999999886 8899999987432 11111 12357899999999844 3689999
Q ss_pred EcCccccccC---------CCCeEEEecccCCCeEEEEEEECCE--EEE--EEEecCC-CCccccccccceeeeeccccc
Q 021495 181 AYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET--IKV--VRRFSLP-NVSKRELAKVVSVFRFPRVSS 246 (311)
Q Consensus 181 v~~~~~L~~l---------~~P~vvQEfInH~G~~~KVyVVGd~--v~~--~~R~Slp-n~~~~~~~~~~~~~~~~~vs~ 246 (311)
|.++++|.+. +.|+++||||+ +.+.+-|-+++|. +.+ +.+.-.+ ++..++ ...
T Consensus 728 v~~~~el~~~~~~a~~~~~~~~vlvEefI~-g~~E~~V~~l~d~~~v~~~~i~e~~~~~g~~~gd-----~~~------- 794 (1073)
T 1a9x_A 728 VYDEADLRRYFQTAVSVSNDAPVLLDHFLD-DAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGD-----SAC------- 794 (1073)
T ss_dssp ECSHHHHHHHHHHCC--------EEEBCCT-TCEEEEEEEEECSSCEEEEEEEEESSCTTSCGGG-----CCE-------
T ss_pred ECCHHHHHHHHHHHHhhCCCCcEEEEEccC-CCcEEEEEEEEECCeEEEEeeEEEEeccCCccCC-----ceE-------
Confidence 9999887642 36899999996 2348888888654 332 1111111 110000 000
Q ss_pred ccccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 247 AAASADDADLDPGIAELP--PRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 247 ~~~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~LGL-~lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
.-|. ..++ ..+.++++|.++.++||+ .++++|+++++ | ++||||||.-||.
T Consensus 795 ---------~~P~-~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v~~--~-~~~viEvNpR~~~ 848 (1073)
T 1a9x_A 795 ---------SLPA-YTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKN--N-EVYLIEVNPRAAR 848 (1073)
T ss_dssp ---------EESC-SSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECS--S-CEEEEEEECSCCT
T ss_pred ---------EecC-CCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEC--C-eEEEEEEECCCcc
Confidence 0010 0122 146789999999999999 67789999963 3 5899999998873
No 49
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.43 E-value=1.5e-12 Score=125.94 Aligned_cols=180 Identities=11% Similarity=0.104 Sum_probs=113.7
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcce
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh 176 (311)
-+++++ .++++++.+.||..+.+.++++ +|++|++..+.+ .++..+. ...++||+|+||..+ + .|.
T Consensus 85 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~--~~~~~~P~vvKp~~~--~-~g~ 151 (422)
T 2xcl_A 85 AGLHVFGPSKAAAIIEGSKQFAKDLMKKY-------DIPTAEYETFTS-FDEAKAY--VQEKGAPIVIKADGL--A-AGK 151 (422)
T ss_dssp TTCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEESC-HHHHHHH--HHHHCSSEEEEESSC--G-GGT
T ss_pred CCCCEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHH--HHhcCCCEEEEeCCC--C-CCC
Confidence 478887 8899999999999999999885 899999988853 2222221 234789999999874 3 478
Q ss_pred eeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEE--CCEEEEEEEecCCCCccccccccceeeee
Q 021495 177 ELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYII--GETIKVVRRFSLPNVSKRELAKVVSVFRF 241 (311)
Q Consensus 177 ~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVV--Gd~v~~~~R~Slpn~~~~~~~~~~~~~~~ 241 (311)
++.++.++++|... ..++++||||+ |.++.|.++ |+.++.. .-.. .....+++
T Consensus 152 Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~dG~~~~~~-----~~~~-----~~~~~~~~ 219 (422)
T 2xcl_A 152 GVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS--GEEFSLMAFVKGEKVYPM-----VIAQ-----DHKRAFDG 219 (422)
T ss_dssp CEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTEEEEC-----CCBE-----EEEEEEGG
T ss_pred cEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc--CcEEEEEEEEcCCEEEec-----ceee-----eeehhcCC
Confidence 89999999877541 36899999996 899999988 4433321 1000 00001111
Q ss_pred cccccccccCCCCCCCCCCCC-CCC--hHHH-HHHHHHHHHHh---CCcE---eEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 242 PRVSSAAASADDADLDPGIAE-LPP--RPLL-ERLARELRHRL---GLRL---FNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 242 ~~vs~~~~~a~~~~~~p~~~~-~p~--~~~~-~~lA~~l~~~L---GL~l---fG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
..-...+.. ....| +. +++ .+.+ ++++.++.++| |+.+ +++|++++. +| ++|+|||.-||.
T Consensus 220 ~~~~~~g~~---~~~~p--~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~~-~g--~~viEiN~R~g~ 290 (422)
T 2xcl_A 220 DKGPNTGGM---GAYSP--VPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTE-NG--SKVIEFNARFGD 290 (422)
T ss_dssp GEEEEEEEE---EEEES--CTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEEESSCCT
T ss_pred CCCCCCCCC---eeEcc--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEeC-CC--cEEEEEecCCCC
Confidence 000000000 00011 11 222 2233 34777777765 6655 558999985 34 899999998874
No 50
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.43 E-value=1e-12 Score=127.28 Aligned_cols=177 Identities=11% Similarity=0.139 Sum_probs=116.0
Q ss_pred eeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEE
Q 021495 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (311)
Q Consensus 101 ~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~l 180 (311)
++-.++++++.+.||..+.+.++++ +|++|++..+.+. ++..+ ....++||+|+||..++ .|.+|.+
T Consensus 93 ~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~e~~~--~~~~~g~PvvvKp~~~~---gg~Gv~~ 159 (412)
T 1vkz_A 93 VFGPVKEVARLEGSKVYAKRFMKKY-------GIRTARFEVAETP-EELRE--KIKKFSPPYVIKADGLA---RGKGVLI 159 (412)
T ss_dssp BSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEESSH-HHHHH--HHTTSCSSEEEEESSCC---SSCCEEE
T ss_pred hhCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEECCH-HHHHH--HHHhcCCCEEEEeCCCC---CCCCEEE
Confidence 5568899999999999999999885 8999999888532 11211 22468999999998844 4688999
Q ss_pred EcCcccccc-----------CC--CCeEEEecccCCCeEEEEEEEC--CEEEEEEEecCCCCccccccccceeeeecccc
Q 021495 181 AYDRFSLSE-----------LE--PPMLLQEFVNHGGILFKIYIIG--ETIKVVRRFSLPNVSKRELAKVVSVFRFPRVS 245 (311)
Q Consensus 181 v~~~~~L~~-----------l~--~P~vvQEfInH~G~~~KVyVVG--d~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs 245 (311)
+.++++|.+ +. .++++||||+ |+++.|.+++ +.+..... ..+. . ..++++...
T Consensus 160 v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~--~~~~-----~---~~~~~~~~~ 227 (412)
T 1vkz_A 160 LDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA--GNELSAMAVVNGRNFVILPF--VRDY-----K---RLMDGDRGP 227 (412)
T ss_dssp ESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC--SEEEEEEEEEETTEEEECCC--CEEC-----C---EEETTTEEE
T ss_pred ECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc--CcEEEEEEEECCCEEEEeee--eEee-----e---eccCCCCCC
Confidence 999987753 11 3899999996 8999999994 33322110 0000 0 001110000
Q ss_pred cccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHh-----CC-cEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 246 SAAASADDADLDPGIAELPP--RPLLERLARELRHRL-----GL-RLFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 246 ~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~L-----GL-~lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
.. .......| +.+++ .+.++++|.++.++| +. .++++|++++. +| +||+|||.-||.
T Consensus 228 ~~---g~~~~~~P--~~l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~ 292 (412)
T 1vkz_A 228 NT---GGMGSWGP--VEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHD-GD--PYILEYNVRLGD 292 (412)
T ss_dssp EC---SCSEEEEC--CCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEEESSCCT
T ss_pred CC---CCceEEEC--CCCCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEEC-CC--cEEEEEecCCCC
Confidence 00 00001112 12222 356789999999999 44 45569999985 34 899999998874
No 51
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.41 E-value=3e-12 Score=124.97 Aligned_cols=174 Identities=13% Similarity=0.189 Sum_probs=117.3
Q ss_pred CCCeeeeC-chhHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCCcchhhHhcCCCCcEEEeeCcCCCCC
Q 021495 97 HPEVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 173 (311)
Q Consensus 97 hP~v~ViD-p~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~--~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~ 173 (311)
.-+++++. ++++++.+.||..+.+.++++ +|++|++. .+. +.+++.+. ...++||+|+||..++
T Consensus 96 ~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~--~~~~g~PvvvKp~~g~--- 162 (451)
T 2vpq_A 96 ACQLKFIGPSYQSIQKMGIKDVAKAEMIKA-------NVPVVPGSDGLMK-DVSEAKKI--AKKIGYPVIIKATAGG--- 162 (451)
T ss_dssp TTTCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCSBCSSCBS-CHHHHHHH--HHHHCSSEEEEETTCC---
T ss_pred HcCCeEECCCHHHHHHhcCHHHHHHHHHHc-------CCCcCCCcccCcC-CHHHHHHH--HHhcCCcEEEEECCCC---
Confidence 35788765 589999999999999999885 78898865 443 22222121 2347899999998844
Q ss_pred cceeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECC---EEEE-EEEe-cCCCCcccccccc
Q 021495 174 KSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIKV-VRRF-SLPNVSKRELAKV 235 (311)
Q Consensus 174 ~sh~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd---~v~~-~~R~-Slpn~~~~~~~~~ 235 (311)
.|.++.++.++++|.+. +.++++||||+ +++++.|.++++ ++.. ..|. |.. ...
T Consensus 163 gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~~~~-------~~~ 234 (451)
T 2vpq_A 163 GGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIE-NFRHIEIQIVGDSYGNVIHLGERDCTIQ-------RRM 234 (451)
T ss_dssp TTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCC-SEEEEEEEEEECTTSCEEEEEEEEEEEE-------ETT
T ss_pred CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecC-CCeEEEEEEEEcCCCCEEEEeccccchh-------ccc
Confidence 46889999999877541 46899999996 248999988874 3433 2221 110 000
Q ss_pred ceeeeecccccccccCCCCCCCCCCCC-CCC--hHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCeEEEEEecCCCC
Q 021495 236 VSVFRFPRVSSAAASADDADLDPGIAE-LPP--RPLLERLARELRHRLGLRLF-NIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 236 ~~~~~~~~vs~~~~~a~~~~~~p~~~~-~p~--~~~~~~lA~~l~~~LGL~lf-G~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
...+. . .| +. +++ .+.+.++|.++.++||+.-+ ++|++++..+| ++||+|||.=||
T Consensus 235 ~~~~~---------~------~P--~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g-~~~viEiN~R~~ 294 (451)
T 2vpq_A 235 QKLVE---------E------AP--SPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDN-KFYFMEMNTRIQ 294 (451)
T ss_dssp EEEEE---------E------ES--CTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEEEECSCC
T ss_pred cceEE---------E------cC--CCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-CEEEEEeeCCCC
Confidence 00000 0 01 11 222 45688999999999999864 59999983245 799999999776
No 52
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.41 E-value=3.5e-12 Score=124.80 Aligned_cols=186 Identities=12% Similarity=0.077 Sum_probs=113.7
Q ss_pred HHHHHhCCCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcC
Q 021495 91 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVV 169 (311)
Q Consensus 91 ~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a 169 (311)
.+.+++ -+++++ .++++++.+.||..+.+.++++ +|++|++..+.+ .++..+. ...++||+|+||..+
T Consensus 100 ~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~--~~~~~~PvVvKp~~~ 168 (451)
T 2yrx_A 100 VDRFMA-EGLRIFGPSQRAALIEGSKAFAKELMKKY-------GIPTADHAAFTS-YEEAKAY--IEQKGAPIVIKADGL 168 (451)
T ss_dssp HHHHHH-TTCCEESCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEESC-HHHHHHH--HHHHCSSEEEEECC-
T ss_pred HHHHHH-CCCCEeCccHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHH--HHhcCCcEEEEeCCC
Confidence 333433 478887 7889999999999999999885 899999988853 2222221 234789999999984
Q ss_pred CCCCcceeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEE--CCEEEEEEEecCCCCccccccc
Q 021495 170 DGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYII--GETIKVVRRFSLPNVSKRELAK 234 (311)
Q Consensus 170 ~GS~~sh~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVV--Gd~v~~~~R~Slpn~~~~~~~~ 234 (311)
. .|.++.++.++++|.+. ..++++||||+ |.+|.|.++ |+.+... +-.. .
T Consensus 169 ~---gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~~~~~~-----~~~~-----~ 233 (451)
T 2yrx_A 169 A---AGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE--GEEFSFMAFVNGEKVYPL-----AIAQ-----D 233 (451)
T ss_dssp ------CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC--SEEEEEEEEEETTEEEEC-----CCBE-----E
T ss_pred C---CCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc--CcEEEEEEEEcCCEEEEe-----eeEE-----e
Confidence 4 46789999999877531 36899999996 899999888 3433321 1000 0
Q ss_pred cceeeeecccccccccCCCCCCCCCCCC-CCC--hHHH-HHHHHHHHHHh---CCcE---eEEEEEEeCCCCCeEEEEEe
Q 021495 235 VVSVFRFPRVSSAAASADDADLDPGIAE-LPP--RPLL-ERLARELRHRL---GLRL---FNIDMIREHGMRDVFYVIDI 304 (311)
Q Consensus 235 ~~~~~~~~~vs~~~~~a~~~~~~p~~~~-~p~--~~~~-~~lA~~l~~~L---GL~l---fG~Dvi~~~~tg~~~~ViDV 304 (311)
....+++..-...+ ......| +. +++ .+.+ ++++.++.++| |+.+ +++|++++. +| ++|+||
T Consensus 234 ~~~~~~~~~~~~~g---~~~~~~p--~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEi 305 (451)
T 2yrx_A 234 HKRAYDGDEGPNTG---GMGAYSP--VPQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMATA-NG--PKVIEF 305 (451)
T ss_dssp CCEEETTTEEEECS---CSEEEES--CTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEE
T ss_pred ccccccCCCCCCCC---CCeEEcc--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEEEEE
Confidence 00011110000000 0000111 11 222 2233 55677676665 6654 558999985 34 899999
Q ss_pred cCCCCC
Q 021495 305 NYFPGR 310 (311)
Q Consensus 305 NyfPG~ 310 (311)
|.-||.
T Consensus 306 N~R~g~ 311 (451)
T 2yrx_A 306 NARFGD 311 (451)
T ss_dssp ESSCCT
T ss_pred ecCCCC
Confidence 998874
No 53
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.41 E-value=2.6e-12 Score=125.43 Aligned_cols=173 Identities=13% Similarity=0.219 Sum_probs=119.0
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCc
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 174 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~--~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~ 174 (311)
-+++++ .++++++.+.||..+.+.++++ +|++|++. .+. +.++..+ ....++||+|+||..++ +
T Consensus 102 ~g~~~~g~~~~~~~~~~dK~~~~~~l~~~-------Gip~p~~~~~~~~-~~~e~~~--~~~~~g~PvvvKp~~g~---g 168 (446)
T 3ouz_A 102 HNIKFIGPSVEAMNLMSDKSKAKQVMQRA-------GVPVIPGSDGALA-GAEAAKK--LAKEIGYPVILKAAAGG---G 168 (446)
T ss_dssp TTCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCSBCSSSCC-SHHHHHH--HHHHHCSSEEEEETTCC---T
T ss_pred CCCceECcCHHHHHHhCCHHHHHHHHHHc-------CCCcCCCcccCCC-CHHHHHH--HHHHhCCCEEEEECCCC---C
Confidence 467777 7899999999999999999885 88999886 342 2111211 22457899999999744 4
Q ss_pred ceeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCE---EEE-EEEe-cCCCCccccccccc
Q 021495 175 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKV-VRRF-SLPNVSKRELAKVV 236 (311)
Q Consensus 175 sh~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~---v~~-~~R~-Slpn~~~~~~~~~~ 236 (311)
|.+|.++.++++|.+. +.++++||||+ +++.+.|.|++|. +.. ..|. |... ...
T Consensus 169 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~~~~~-------~~~ 240 (446)
T 3ouz_A 169 GRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQ-NPRHIEVQVIGDSFGNVIHVGERDCSMQR-------RHQ 240 (446)
T ss_dssp TCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCS-SCEEEEEEEEECTTSCEEEEEEEEEEEEE-------TTE
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC-CCcEEEEEEEEcCCCCEEEEeeceeeeee-------cCc
Confidence 6889999999988652 57899999996 2489999999763 322 2222 1100 000
Q ss_pred eeeeecccccccccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 237 SVFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 237 ~~~~~~~vs~~~~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~LGL~l-fG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
.... ..|.. .++ ..+.+.++|.++.++||+.- +++|++++.+ | ++|++|||.=||
T Consensus 241 ~~~~---------------~~p~~-~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~~-g-~~~~iEiNpR~~ 298 (446)
T 3ouz_A 241 KLIE---------------ESPAI-LLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKN-L-DFYFIEMNTRLQ 298 (446)
T ss_dssp EEEE---------------EESCT-TSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTT-C-CEEEEEEESSCC
T ss_pred eEEE---------------ECCCC-CCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEeCC-C-CEEEEEeECCCC
Confidence 0000 00100 111 14678899999999999975 4599999863 4 699999999775
No 54
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.39 E-value=3.1e-12 Score=125.14 Aligned_cols=180 Identities=11% Similarity=0.127 Sum_probs=112.9
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCc-EEEeeCcCCCCCcc
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPLVVDGSAKS 175 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP-~VvKP~~a~GS~~s 175 (311)
-+++++ .++++++.+.||..+.+.++++ +|++|++..+.+. +++.+ ....++|| +|+||..++ .|
T Consensus 111 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~--~~~~~g~P~vvvKp~~~~---gg 177 (452)
T 2qk4_A 111 AGVQCFGPTAEAAQLESSKRFAKEFMDRH-------GIPTAQWKAFTKP-EEACS--FILSADFPALVVKASGLA---AG 177 (452)
T ss_dssp TTCCEESCCTTTTHHHHBHHHHHHHHHHT-------TCCBCCEEEESSH-HHHHH--HHHHCSSCEEEEEESBC------
T ss_pred cCCcEeCcCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECCH-HHHHH--HHHhCCCCeEEEEeCCCC---CC
Confidence 478887 8899999999999999999885 8999999988532 11212 12358899 999998744 46
Q ss_pred eeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECC--EEEEEEEecCCCCccccccccceeee
Q 021495 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE--TIKVVRRFSLPNVSKRELAKVVSVFR 240 (311)
Q Consensus 176 h~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd--~v~~~~R~Slpn~~~~~~~~~~~~~~ 240 (311)
.++.++.++++|.+. ..++++||||+ |.++.|.+++| .+... +-.. .. ...+.
T Consensus 178 ~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~~~~~~-----~~~~--~~---~~~~~ 245 (452)
T 2qk4_A 178 KGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD--GEEVSCLCFTDGKTVAPM-----PPAQ--DH---KRLLE 245 (452)
T ss_dssp CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC--SEEEEEEEEECSSCEEEC-----CCBE--EE---EEEET
T ss_pred CCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCeEEEEEEECCCEEEEc-----ceee--ec---ccccC
Confidence 889999999877541 36899999996 89999999843 24321 1100 00 00010
Q ss_pred ecccccccccCCCCCCCCCCCC-CCC--hHHHH-HHHHHHHHHh---CCc---EeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 241 FPRVSSAAASADDADLDPGIAE-LPP--RPLLE-RLARELRHRL---GLR---LFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 241 ~~~vs~~~~~a~~~~~~p~~~~-~p~--~~~~~-~lA~~l~~~L---GL~---lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
++.-...+.. ....| +. +++ .+.+. ++|.++.++| |+. .+++|++++. +| +||+|||.-||.
T Consensus 246 ~~~~~~~g~~---~~~~P--~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~~~ 317 (452)
T 2qk4_A 246 GDGGPNTGGM---GAYCP--APQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTK-NG--PKVLEFNCRFGD 317 (452)
T ss_dssp TTEEEEEEEE---EEEES--CTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEET-TE--EEEEEEESSCCT
T ss_pred CCCCCCCCCc---eeecc--CccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEEEEEeccCCC
Confidence 0000000000 00111 11 222 23343 6777777775 444 5779999985 34 899999998873
No 55
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.38 E-value=1.8e-12 Score=130.70 Aligned_cols=175 Identities=15% Similarity=0.153 Sum_probs=113.5
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEE----EccC---------------------CCCcch
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV----ITKD---------------------SLSIPD 151 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~----i~~~---------------------~~~~~~ 151 (311)
-+++++ .++++++.+.||..+.+.++++ +|++|++.. +.+. ..+..+
T Consensus 147 ~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~-------GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e 219 (540)
T 3glk_A 147 NGVAFLGPPSEAMWALGDKIASTVVAQTL-------QVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDE 219 (540)
T ss_dssp TTCEESSCCHHHHC---CHHHHHHHHHHT-------TCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHH
T ss_pred cCCceeCCCHHHHHHhCCHHHHHHHHHHc-------CCCCCCcccccccccccccccccccccccccccccccCcCCHHH
Confidence 478888 8899999999999999999885 788888754 0000 011111
Q ss_pred h-hHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC---------CCCeEEEecccCCCeEEEEEEECCE---EE-
Q 021495 152 Q-VFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET---IK- 217 (311)
Q Consensus 152 ~-l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l---------~~P~vvQEfInH~G~~~KVyVVGd~---v~- 217 (311)
. -....++||+|+||..++ +|.+|.+|.++++|.+. +.++++||||+ +++.+-|.|++|. +.
T Consensus 220 a~~~a~~igyPvVVKp~~gg---GG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~-g~rei~V~vl~d~~G~vv~ 295 (540)
T 3glk_A 220 GLEAAERIGFPLMIKASEGG---GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ-HARHLEVQILADQYGNAVS 295 (540)
T ss_dssp HHHHHHHHCSSEEEEETTCC-------EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCS-SEEEEEEEEEECTTSCEEE
T ss_pred HHHHHHhcCCcEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEE
Confidence 1 122468999999998844 36889999999988652 56899999995 2499999999874 33
Q ss_pred EEEEe-cCCCCccccccccceeeeecccccccccCCCCCCCCCCCC-CC--ChHHHHHHHHHHHHHhCCcEe-EEEEEEe
Q 021495 218 VVRRF-SLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAE-LP--PRPLLERLARELRHRLGLRLF-NIDMIRE 292 (311)
Q Consensus 218 ~~~R~-Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~-~p--~~~~~~~lA~~l~~~LGL~lf-G~Dvi~~ 292 (311)
+..|. |... .+..... . .| +. ++ ..+.+.++|.++.++||+.-+ ++|++++
T Consensus 296 l~~rd~s~qr--------------~~~k~ie--~------~P--a~~l~~~~~~~l~~~a~~~~~alG~~G~~~VEf~~d 351 (540)
T 3glk_A 296 LFGRDCSIQR--------------RHQKIVE--E------AP--ATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYS 351 (540)
T ss_dssp EEEEEEEEC-----------------CCSEE--E------ES--CTTSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE
T ss_pred Eeceeeeeee--------------cccceEE--e------cC--CCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEc
Confidence 23332 2211 0000000 0 01 11 11 146788999999999999754 5999998
Q ss_pred CCCCCeEEEEEecCCCC
Q 021495 293 HGMRDVFYVIDINYFPG 309 (311)
Q Consensus 293 ~~tg~~~~ViDVNyfPG 309 (311)
. +| ++|++|||.=||
T Consensus 352 ~-dg-~~~~lEiNpR~~ 366 (540)
T 3glk_A 352 Q-DG-SFHFLELNPRLQ 366 (540)
T ss_dssp T-TS-CEEEEEEECSCC
T ss_pred C-CC-CEEEEEEECCCC
Confidence 5 35 699999999776
No 56
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.37 E-value=3.6e-12 Score=124.88 Aligned_cols=173 Identities=11% Similarity=0.169 Sum_probs=117.7
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCc
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 174 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~--~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~ 174 (311)
-+++++ .++++++.+.||..+.+.++++ +|++|++. .+. +.++..+. ...++||+|+||..++ +
T Consensus 103 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~-~~~~~~~~--~~~~g~PvvvKp~~g~---g 169 (461)
T 2dzd_A 103 EGIIFIGPNENHLDMFGDKVKARHAAVNA-------GIPVIPGSDGPVD-GLEDVVAF--AEAHGYPIIIKAALGG---G 169 (461)
T ss_dssp TTCEESSCCHHHHHHTTSHHHHHHHHHHT-------TCCBCCBCSSCCS-SHHHHHHH--HHHHCSCEEEEESTTC---S
T ss_pred cCCEEECCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCCcccCcC-CHHHHHHH--HHhcCCcEEEEeCCCC---C
Confidence 367765 7799999999999999999875 78999886 343 21112121 2357899999999844 4
Q ss_pred ceeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCE---EE-EEEEecCCCCccccccccce
Q 021495 175 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IK-VVRRFSLPNVSKRELAKVVS 237 (311)
Q Consensus 175 sh~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~---v~-~~~R~Slpn~~~~~~~~~~~ 237 (311)
|.+|.++.++++|.+. +.++++||||+ +++.+.|.++++. +. +..|.. + .......
T Consensus 170 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~-~-----~~~~~~~ 242 (461)
T 2dzd_A 170 GRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIE-NPKHIEVQILGDYEGNIVHLYERDC-S-----VQRRHQK 242 (461)
T ss_dssp SSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCC-SCEEEEEEEEECTTCCEEEEEEEEE-E-----EEETTEE
T ss_pred CCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCC-CCeEEEEEEEEcCCCCEEEEEeccc-c-----ccccccc
Confidence 6789999999887542 46899999996 3589999998752 33 233311 0 0000000
Q ss_pred eeeecccccccccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCC
Q 021495 238 VFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 238 ~~~~~~vs~~~~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
.+. . .|. ..++ ..+.+.++|.++.++||+...+ +|++++. | .+|++|||.=||
T Consensus 243 ~~~---------~------~P~-~~l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~--~-~~~viEiN~R~~ 298 (461)
T 2dzd_A 243 VVE---------V------APS-VSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSG--D-EFYFIEVNPRIQ 298 (461)
T ss_dssp EEE---------E------ESC-TTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEET--T-EEEEEEEESSCC
T ss_pred eEE---------E------CCc-ccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC--C-CEEEEEEECCCC
Confidence 000 0 010 0122 1466889999999999999866 9999985 4 699999999776
No 57
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.37 E-value=1.3e-12 Score=127.45 Aligned_cols=174 Identities=12% Similarity=0.169 Sum_probs=117.1
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCc
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 174 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~--~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~ 174 (311)
-+++++ .++++++.+.||..+.+.++++ +|++|++. .+. +.++..+. ...++||+|+||..++ .
T Consensus 97 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~--~~~~g~PvvvKp~~g~---g 163 (451)
T 1ulz_A 97 AGITFIGPHWKVIELMGDKARSKEVMKKA-------GVPVVPGSDGVLK-SLEEAKAL--AREIGYPVLLKATAGG---G 163 (451)
T ss_dssp TTCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSSCC-CHHHHHHH--HHHHCSSEEEEECSSS---S
T ss_pred CCCeEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccccC-CHHHHHHH--HHHcCCCEEEEECCCC---C
Confidence 478766 6799999999999999999885 78999886 443 21112121 2347899999999844 3
Q ss_pred ceeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECC---EEEE-EEEecCCCCccccccccce
Q 021495 175 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIKV-VRRFSLPNVSKRELAKVVS 237 (311)
Q Consensus 175 sh~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd---~v~~-~~R~Slpn~~~~~~~~~~~ 237 (311)
|.++.++.++++|.+. +.++++||||+ +++++.|.++++ ++.. ..|.. + + ......
T Consensus 164 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~-~-~----~~~~~~ 236 (451)
T 1ulz_A 164 GRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIE-NPKHIEYQVLGDKHGNVIHLGERDC-S-I----QRRNQK 236 (451)
T ss_dssp CCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCC-SCEEEEEEEEECTTSCEEEEEEEEE-E-E----EETTEE
T ss_pred CccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccc-CCeEEEEEEEEcCCCCEEEEeeeec-c-c----cccccc
Confidence 5789999999887541 46899999996 348999999975 2332 33321 0 0 000000
Q ss_pred eeeecccccccccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 238 VFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 238 ~~~~~~vs~~~~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~LGL~l-fG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
.+. . .|.. .++ ..+.+.++|.++.++||+.- +++|++++. +| ++||+|||.=||
T Consensus 237 ~~~---------~------~P~~-~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~g-~~~viEiN~R~~ 293 (451)
T 1ulz_A 237 LVE---------I------APSL-ILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQ-EG-NLYFIEMNTRIQ 293 (451)
T ss_dssp EEE---------E------ESCS-SCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEECSCC
T ss_pred cee---------E------CCcc-cCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CC-CEEEEEeeCCCC
Confidence 000 0 0100 022 14568899999999999984 469999985 34 689999999775
No 58
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.36 E-value=3.6e-12 Score=129.52 Aligned_cols=175 Identities=15% Similarity=0.167 Sum_probs=119.4
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEE--E--cc--------------------C-CCCcch
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV--I--TK--------------------D-SLSIPD 151 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~--i--~~--------------------~-~~~~~~ 151 (311)
-+++++ .++++++.+.||..+.+.++++ +|++|++.. + ++ . ..+..+
T Consensus 163 ~Gi~~iGp~~~ai~~~~DK~~ak~ll~~a-------GVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~ee 235 (587)
T 3jrx_A 163 NGVAFLGPPSEAMWALGDKIASTVVAQTL-------QVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDE 235 (587)
T ss_dssp TTCEESSCCHHHHHHHCSHHHHHHHHHHT-------TCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHH
T ss_pred CCCCeeCCCHHHHHHhCCHHHHHHHHHHc-------CCCCCCeecccccccccccccccccccccchhhccccccCCHHH
Confidence 578888 8899999999999999999875 788888754 0 00 0 011111
Q ss_pred h-hHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC---------CCCeEEEecccCCCeEEEEEEECCE---EE-
Q 021495 152 Q-VFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET---IK- 217 (311)
Q Consensus 152 ~-l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l---------~~P~vvQEfInH~G~~~KVyVVGd~---v~- 217 (311)
. -....++||+|+||..++| |.+|.+|.++++|.+. +.++++||||+ +++.+-|.|++|. +.
T Consensus 236 a~~~a~~iGyPvVVKp~~GgG---GkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~-g~rei~V~vl~D~~G~vv~ 311 (587)
T 3jrx_A 236 GLEAAERIGFPLMIKASEGGG---GKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ-HARHLEVQILADQYGNAVS 311 (587)
T ss_dssp HHHHHHHHCSSEEEEETTCCS---SSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEEEEECSSSCEEE
T ss_pred HHHHHHhcCCeEEEEeCCCCC---CCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEE
Confidence 1 1234689999999988443 6789999999988652 57899999995 2499999999874 32
Q ss_pred EEEEe-cCCCCccccccccceeeeecccccccccCCCCCCCCCCCC-CC--ChHHHHHHHHHHHHHhCCcEe-EEEEEEe
Q 021495 218 VVRRF-SLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAE-LP--PRPLLERLARELRHRLGLRLF-NIDMIRE 292 (311)
Q Consensus 218 ~~~R~-Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~-~p--~~~~~~~lA~~l~~~LGL~lf-G~Dvi~~ 292 (311)
+..|. |+.. .+..... . .| +. ++ ..+.+.++|.++.+++|+.-+ ++|++++
T Consensus 312 l~~rd~siqr--------------r~qk~ie--~------aP--a~~l~~~~~~~i~~~A~~~a~alGy~G~~~VEfl~d 367 (587)
T 3jrx_A 312 LFGRDCSIQR--------------RHQKIVE--E------AP--ATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYS 367 (587)
T ss_dssp EEEEEEEEES--------------SSCEEEE--E------ES--CCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEC
T ss_pred Eeeeeccccc--------------cccceeE--e------cC--CCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEe
Confidence 23332 2111 0100000 0 01 11 11 146789999999999999755 4999997
Q ss_pred CCCCCeEEEEEecCCCC
Q 021495 293 HGMRDVFYVIDINYFPG 309 (311)
Q Consensus 293 ~~tg~~~~ViDVNyfPG 309 (311)
. +| ++|++|||.=||
T Consensus 368 ~-dG-~~yflEINpRl~ 382 (587)
T 3jrx_A 368 Q-DG-SFHFLELNPRLQ 382 (587)
T ss_dssp S-SS-CEEEEEEESSCC
T ss_pred C-CC-CEEEEEEeCCCC
Confidence 5 35 699999999776
No 59
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.35 E-value=1.9e-11 Score=119.24 Aligned_cols=172 Identities=12% Similarity=0.195 Sum_probs=116.7
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCCc-chhhHhcCCCCcEEEeeCcCCCCC
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSI-PDQVFEAGLKLPLVAKPLVVDGSA 173 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~--~i~~~~~~~-~~~l~~~~l~fP~VvKP~~a~GS~ 173 (311)
-+++++ .++++++.+.||..+.+.++++ +|++|++. .+. +.++. .+ ....++||+|+||..++
T Consensus 98 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~--~~~~~g~PvvvKp~~g~--- 164 (449)
T 2w70_A 98 SGFIFIGPKAETIRLMGDKVSAIAAMKKA-------GVPCVPGSDGPLG-DDMDKNRA--IAKRIGYPVIIKASGGG--- 164 (449)
T ss_dssp TTCEESSSCHHHHHHHHSHHHHHHHHHHH-------TCCBCSBCSSCCC-SCHHHHHH--HHHHHCSSEEEEETTCC---
T ss_pred cCCceECCCHHHHHHhcCHHHHHHHHHHc-------CCCcCCCcccccC-CHHHHHHH--HHHHhCCcEEEEECCCC---
Confidence 477765 5699999999999999999886 78999886 443 22222 12 12347899999999844
Q ss_pred cceeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECC---EEEE-EEEe-cCCCCcccccccc
Q 021495 174 KSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIKV-VRRF-SLPNVSKRELAKV 235 (311)
Q Consensus 174 ~sh~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd---~v~~-~~R~-Slpn~~~~~~~~~ 235 (311)
+|.++.++.++++|.+. +.++++||||+ +++.+.|.++++ ++.. ..|. +.. ...
T Consensus 165 gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~~~~~~~G~~~~~~~~~~~~~-------~~~ 236 (449)
T 2w70_A 165 GGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLE-NPRHVEIQVLADGQGNAIYLAERDCSMQ-------RRH 236 (449)
T ss_dssp TTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCS-SCEEEEEEEEECTTSCEEEEEEEEEEEE-------ETT
T ss_pred CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccC-CCeEEEEEEEEcCCCCEEEEeceecccc-------cCC
Confidence 35789999999877541 56899999996 358999999864 3432 3331 110 000
Q ss_pred ceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 236 VSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 236 ~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~l-fG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
..... . .|.. .+++ .+.+.++|.++.++||+.- +++|++++. | +++++|||.=||
T Consensus 237 ~~~~~---------~------~p~~-~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~--~-~~~viEiN~R~~ 294 (449)
T 2w70_A 237 QKVVE---------E------APAP-GITPELRRYIGERCAKACVDIGYRGAGTFEFLFEN--G-EFYFIEMNTRIQ 294 (449)
T ss_dssp EEEEE---------E------ESCT-TCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEECSCC
T ss_pred cceee---------e------CCcc-cCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC--C-CEEEEEEECCCC
Confidence 00000 0 0100 1221 4578899999999999974 569999985 4 699999999765
No 60
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.33 E-value=3.4e-11 Score=130.69 Aligned_cols=172 Identities=12% Similarity=0.226 Sum_probs=114.3
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCc
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 174 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~--~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~ 174 (311)
-+++++ .++++++.+.||..+.+.++++ +|++|++. .+.+ .++..+ ....++||+|+||..++ +
T Consensus 101 ~Gi~~iGp~~eai~~~~DK~~~r~ll~~a-------GIPvpp~~~~~v~s-~eea~~--~a~~iGyPvVVKP~~Gg---G 167 (1150)
T 3hbl_A 101 EGIKFIGPHLEHLDMFGDKVKARTTAIKA-------DLPVIPGTDGPIKS-YELAKE--FAEEAGFPLMIKATSGG---G 167 (1150)
T ss_dssp TTCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSCBCS-SSTTTT--TGGGTCSSEEEECCC------
T ss_pred CCCCeeCCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCccccCCCC-HHHHHH--HHHHcCCCEEEEeCCCC---C
Confidence 377777 8889999999999999999885 88999887 4432 222222 23468999999999844 4
Q ss_pred ceeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEEe-cCCCCccccccccc
Q 021495 175 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSKRELAKVV 236 (311)
Q Consensus 175 sh~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~----v~~~~R~-Slpn~~~~~~~~~~ 236 (311)
|.+|.++.++++|.+. +.++++||||. +.+.+-|-|++|. +....|. |... ...
T Consensus 168 g~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~-G~reieV~vl~d~~G~vv~l~er~~s~qr-------~~~ 239 (1150)
T 3hbl_A 168 GKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYID-NPKHIEVQVIGDEHGNIVHLFERDCSVQR-------RHQ 239 (1150)
T ss_dssp ----CEECCSSSCTHHHHSSSSSCC------CBEEECCCS-SCEEEEEEEEECSSSCEEEEEEEEEEEES-------SSC
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccC-CCcEEEEEEEEeCCCCEEEEEeeccceec-------cCc
Confidence 6889999999887641 35799999996 2489999999874 2233332 2110 000
Q ss_pred eeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCC
Q 021495 237 SVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 237 ~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
.... ..|.. .+++ .+.+.++|.++.+++|+.-++ +|++++.+ ++|++|||.=||
T Consensus 240 k~~e---------------~~Pa~-~l~~~~~~~l~~~a~~~~~alG~~G~~~vEflvd~d---~~y~iEINpR~~ 296 (1150)
T 3hbl_A 240 KVVE---------------VAPSV-GLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGD---EFFFIEVNPRVQ 296 (1150)
T ss_dssp EEEE---------------ESSCS-SCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETT---EEEEEEEECSCC
T ss_pred eeEE---------------ecCCC-CCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECC---eEEEEEEeCCCC
Confidence 0000 00110 1221 457899999999999998765 99999863 599999998775
No 61
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.29 E-value=3e-11 Score=121.67 Aligned_cols=175 Identities=15% Similarity=0.154 Sum_probs=114.1
Q ss_pred eeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-----ccC-----------------CCCcchhh-Hh
Q 021495 100 VTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-----TKD-----------------SLSIPDQV-FE 155 (311)
Q Consensus 100 v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i-----~~~-----------------~~~~~~~l-~~ 155 (311)
++++ .++++++.+.||..+.+.++++ +|++|++..+ ..+ ..+..+.. ..
T Consensus 158 i~~~gp~~~a~~~~~dK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~ 230 (554)
T 1w96_A 158 VIFIGPPGNAMRSLGDKISSTIVAQSA-------KVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKA 230 (554)
T ss_dssp CEESSCCHHHHHHSCSHHHHHHHHHHT-------TCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHhCHHHHHHHHHHC-------CCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHH
Confidence 5554 4567999999999999999885 7888886542 000 01111111 12
Q ss_pred cCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC---------CCCeEEEecccCCCeEEEEEEECCE---EEE-EEEe
Q 021495 156 AGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET---IKV-VRRF 222 (311)
Q Consensus 156 ~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l---------~~P~vvQEfInH~G~~~KVyVVGd~---v~~-~~R~ 222 (311)
..++||+|+||..++| |.+|.++.++++|... ..++++||||. +|+.+.|.+++|. +.. ..|.
T Consensus 231 ~~~g~PvVvKp~~g~g---g~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~-g~~e~sv~vl~d~~G~vv~l~~~~ 306 (554)
T 1w96_A 231 KRIGFPVMIKASEGGG---GKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAG-RARHLEVQLLADQYGTNISLFGRD 306 (554)
T ss_dssp HHHCSSEEEEETTCCT---TTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEEEEECTTSCEEEEEEEE
T ss_pred HHcCCCEEEEECCCCC---CceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEEEeeee
Confidence 3578999999998544 5789999999887642 56899999997 4689999999763 332 2331
Q ss_pred -cCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCe
Q 021495 223 -SLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLR-LFNIDMIREHGMRDV 298 (311)
Q Consensus 223 -Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~ 298 (311)
+..+. ...... . .|.. .++ ..+.+.++|.++.++||+. .+++|++++..+| +
T Consensus 307 ~~~~~~-------~~k~~~---------~------~P~~-~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg-~ 362 (554)
T 1w96_A 307 CSVQRR-------HQKIIE---------E------APVT-IAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDG-K 362 (554)
T ss_dssp EEEEET-------TEEEEE---------E------ESCC-SSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTC-C
T ss_pred eeeEee-------ccceee---------e------CCCc-CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-C
Confidence 21100 000000 0 0100 011 1467889999999999995 5569999973344 6
Q ss_pred EEEEEecCCCC
Q 021495 299 FYVIDINYFPG 309 (311)
Q Consensus 299 ~~ViDVNyfPG 309 (311)
+|++|||.=+|
T Consensus 363 ~~~iEiN~R~~ 373 (554)
T 1w96_A 363 FYFLELNPRLQ 373 (554)
T ss_dssp EEEEEEECSCC
T ss_pred EEEEEeeCCCC
Confidence 89999998665
No 62
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.28 E-value=7.6e-12 Score=129.24 Aligned_cols=179 Identities=16% Similarity=0.231 Sum_probs=84.6
Q ss_pred HHHHHhCCCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCCcchhhHhcCCCCcEEEeeC
Q 021495 91 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPL 167 (311)
Q Consensus 91 ~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~--~i~~~~~~~~~~l~~~~l~fP~VvKP~ 167 (311)
.+.+++ -+++++ .++++++.+.||..+.+.++++ +|++|++. .+. +.++..+ ....++||+|+||.
T Consensus 92 a~~le~-~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~-------GVPvpp~~~~~~~-s~~e~~~--~a~~igyPvVvKp~ 160 (681)
T 3n6r_A 92 AEALEA-EGVIFVGPPKGAIEAMGDKITSKKIAQEA-------NVSTVPGYMGLIE-DADEAVK--ISNQIGYPVMIKAS 160 (681)
T ss_dssp HHHHHT-TTCCCSSSCHHHHHHTTSHHHHHHHHHTT-------TCCCCCC------------------------------
T ss_pred HHHHHH-cCCceECCCHHHHHHhCCHHHHHHHHHHc-------CcCcCCccccCcC-CHHHHHH--HHHhcCCcEEEEEC
Confidence 333434 378877 7899999999999999999875 88999875 333 2222222 23578999999999
Q ss_pred cCCCCCcceeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEEe-cCCCCcc
Q 021495 168 VVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSK 229 (311)
Q Consensus 168 ~a~GS~~sh~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~----v~~~~R~-Slpn~~~ 229 (311)
.++ +|.+|.++.++++|.+. +.++++||||+. ++.+.|.|++|. +....|. |+..
T Consensus 161 ~gg---ggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g-~rei~V~v~~d~~G~vv~l~~rd~s~qr--- 233 (681)
T 3n6r_A 161 AGG---GGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQ-PRHIEIQVLCDSHGNGIYLGERECSIQR--- 233 (681)
T ss_dssp ---------------------------------------------CCS-CEEEEEEEECCSSSCCEEEEEEECCCEE---
T ss_pred CCC---CCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCC-CcEEEEEEEEeCCCCEEEEeeeecceec---
Confidence 744 46889999999887652 347999999963 499999999874 2233333 2210
Q ss_pred ccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecC
Q 021495 230 RELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINY 306 (311)
Q Consensus 230 ~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNy 306 (311)
....... . .|.. .+++ .+.+.++|.++.+++|+.-++ +|++++. +| ++|++|||.
T Consensus 234 ----~~~k~~e---------~------~Pa~-~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~d~-dg-~~~~lEiNp 291 (681)
T 3n6r_A 234 ----RNQKVVE---------E------APSP-FLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDG-QK-NFYFLEMNT 291 (681)
T ss_dssp ----TTEECEE---------E------ESCS-SCCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECT-TS-CCCCCEEEC
T ss_pred ----cCccEEE---------e------cCCC-CCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEeC-CC-CEEEEeccc
Confidence 0000000 0 0100 0121 457889999999999998554 9999985 35 689999998
Q ss_pred CCC
Q 021495 307 FPG 309 (311)
Q Consensus 307 fPG 309 (311)
=|+
T Consensus 292 R~~ 294 (681)
T 3n6r_A 292 RLQ 294 (681)
T ss_dssp SCC
T ss_pred ccC
Confidence 774
No 63
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.26 E-value=1.1e-11 Score=127.96 Aligned_cols=174 Identities=13% Similarity=0.165 Sum_probs=114.6
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEc-cCCCCcchhhHhcCCCCcEEEeeCcCCCCCcc
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT-KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~-~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~s 175 (311)
-+++++ .++++++.+.||..+.+.+.++ +|++|++.... .+.++..+ ....++||+|+||..++ +|
T Consensus 124 ~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GVpvpp~~~~~~~s~~e~~~--~a~~igyPvvvKp~~G~---Gg 191 (675)
T 3u9t_A 124 AGLLFLGPPAAAIDAMGSKSAAKALMEEA-------GVPLVPGYHGEAQDLETFRR--EAGRIGYPVLLKAAAGG---GG 191 (675)
T ss_dssp TTCEESSCCHHHHHHHTSHHHHHHHHHHT-------TCCBCCCCCSCCCCTTHHHH--HHHHSCSSBCCBCCC-------
T ss_pred cCCceeCCCHHHHHHhchHHHHHHHHHHc-------CcCcCCccccCCCCHHHHHH--HHHhCCCcEEEEECCCC---CC
Confidence 467766 7889999999999999999875 78998876421 12222222 23468999999999844 46
Q ss_pred eeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECC---EEE-EEEEe-cCCCCccccccccce
Q 021495 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIK-VVRRF-SLPNVSKRELAKVVS 237 (311)
Q Consensus 176 h~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd---~v~-~~~R~-Slpn~~~~~~~~~~~ 237 (311)
.+|.++.++++|.+. +.++++||||+. .+.+-|-|++| .+. ...|. |+..- .. .
T Consensus 192 ~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g-~reiev~v~~d~~G~vv~l~~rd~s~qr~--~q-----k 263 (675)
T 3u9t_A 192 KGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLK-PRHVEIQVFADRHGHCLYLNERDCSIQRR--HQ-----K 263 (675)
T ss_dssp --CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSS-CBCEEEEEEECSSSCEEEEEEEECCCBSS--SS-----B
T ss_pred ccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCC-CcEEEEEEEEcCCCCEEEEeccccceeec--cc-----e
Confidence 889999999887541 358999999963 38888888876 333 33443 22110 00 0
Q ss_pred eeeecccccccccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 238 VFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 238 ~~~~~~vs~~~~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
.+. ..|.. .++ ..+.+.++|.++.+++|+. .+++|++++. +| ++|++|||.=|+
T Consensus 264 ~ie---------------~~Pa~-~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~-dG-~~~~iEiNpR~~ 320 (675)
T 3u9t_A 264 VVE---------------EAPAP-GLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDE-RG-QFFFMEMNTRLQ 320 (675)
T ss_dssp CEE---------------EESCS-SCCHHHHHHHHHHHHHHHHHTTCCSEEEEECCBCT-TS-CBCBCEEESSCC
T ss_pred EEE---------------ECCCC-CCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcC-CC-CEEEEecccccc
Confidence 000 00100 012 1467889999999999995 5569999985 45 689999998775
No 64
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.24 E-value=1.1e-10 Score=127.20 Aligned_cols=209 Identities=18% Similarity=0.212 Sum_probs=96.3
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeee-CchhHHHHhcCHHHHHHHHH
Q 021495 45 QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVA 123 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~ 123 (311)
...+++.|++.|++.+..-.. .+++ .. .+.+..++ -+++++ .++++++.+.||..+.+.++
T Consensus 92 ~~~Il~~a~~~~iDaI~pg~g-~lsE---------------n~-~~a~~le~-~Gi~~iGps~eai~~~~DK~~ak~ll~ 153 (1236)
T 3va7_A 92 IDKIINAAKKTGAQAIIPGYG-FLSE---------------NA-DFSDRCSQ-ENIVFVGPSGDAIRKLGLKHSAREIAE 153 (1236)
T ss_dssp HHHHHHHHHHTTCSEEECCSS-GGGG---------------CH-HHHHHHHT-TTCEESSCCHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEECCc-cccc---------------cH-HHHHHHHH-CCCCeeCCCHHHHHHhcCHHHHHHHHH
Confidence 346788888888776554321 1111 11 23333333 578776 88899999999999999998
Q ss_pred hccccCCCCccccCcE-EEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC------------
Q 021495 124 DLNLSDCNGKVRVPRQ-MVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------------ 190 (311)
Q Consensus 124 ~l~~~~~~~~i~~P~~-~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l------------ 190 (311)
++ +|++|++ ..+. +.++..+ ....++||+|+||..++ +|.+|.++.++++|.+.
T Consensus 154 ~a-------GIPvpp~~~~v~-s~eea~~--~a~~iGyPvVVKP~~Gg---GGkGV~iv~s~eEL~~a~~~~~~~a~~~~ 220 (1236)
T 3va7_A 154 RA-------KVPLVPGSGLIK-DAKEAKE--VAKKLEYPVMVKSTAGG---GGIGLQKVDSEDDIERVFETVQHQGKSYF 220 (1236)
T ss_dssp HT-------TCCCCC-----------------------------------------------------------------
T ss_pred Hc-------CCCCCCeeEecC-CHHHHHH--HHHHcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 85 7888774 3443 2222222 23568999999998744 46889999999887642
Q ss_pred -CCCeEEEecccCCCeEEEEEEECCE---EEE-EEEe-cCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCC
Q 021495 191 -EPPMLLQEFVNHGGILFKIYIIGET---IKV-VRRF-SLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP 264 (311)
Q Consensus 191 -~~P~vvQEfInH~G~~~KVyVVGd~---v~~-~~R~-Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p 264 (311)
+.++++||||. +++.+.|.|++|. +.. ..|. |.. ..+.... .. .|.. .++
T Consensus 221 ~~~~vlVEeyI~-G~rEisV~vl~Dg~g~vv~l~~rd~s~q--------------r~~~k~~--e~------~Pa~-~l~ 276 (1236)
T 3va7_A 221 GDAGVFMERFVN-NARHVEIQMMGDGFGKAIAIGERDCSLQ--------------RRNQKVI--EE------TPAP-NLP 276 (1236)
T ss_dssp -------------CCEEEEEEEEEESSSCEEEEEEEEEEEE--------------ETTEEEE--EE------ESCS-SCC
T ss_pred CCCcEEEeeccC-CCeEEEEEEEecCCceEEEEeeeeeeee--------------ecCcceE--EE------cCCC-CCC
Confidence 35799999996 2599999999873 322 2331 211 0000000 00 0100 122
Q ss_pred C--hHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 265 P--RPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 265 ~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
+ .+.+.++|.++.+++|+. .+++|++++.++| ++|++|||.=++
T Consensus 277 ~~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g-~~y~iEINpRl~ 323 (1236)
T 3va7_A 277 EATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRD-EFYFLEVNARLQ 323 (1236)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT-EEEEEEEECSCC
T ss_pred HHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-cEEEEEEECCCC
Confidence 1 457889999999999997 5569999986445 799999998653
No 65
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.18 E-value=8.4e-11 Score=127.76 Aligned_cols=174 Identities=14% Similarity=0.178 Sum_probs=83.1
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCc
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 174 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~--~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~ 174 (311)
-+++++ .++++++.+.||..+.+.+.++ +|++|++. .+.+ .++..+ ....++||+|+||..++ +
T Consensus 117 ~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GIPvp~~~~~~v~s-~eea~~--~a~~igyPvVVKp~~g~---G 183 (1165)
T 2qf7_A 117 AGIIFIGPKADTMRQLGNKVAARNLAISV-------GVPVVPATEPLPDD-MAEVAK--MAAAIGYPVMLKASWGG---G 183 (1165)
T ss_dssp TTCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBC---------------------------------------
T ss_pred cCCceECCCHHHHHHHCCHHHHHHHHHHc-------CCCCCCeeCcCCCC-HHHHHH--HHHhcCCCEEEEeCCCC---C
Confidence 467775 6689999999999999999875 89999987 4432 222222 12468999999998844 3
Q ss_pred ceeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCE---EEE-EEEe-cCCCCccccccccc
Q 021495 175 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKV-VRRF-SLPNVSKRELAKVV 236 (311)
Q Consensus 175 sh~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~---v~~-~~R~-Slpn~~~~~~~~~~ 236 (311)
|.+|.++.++++|.+. +.++++||||+ +|+.+.|.+++|. +.. ..|. |.. ..+.
T Consensus 184 G~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~-gg~EisV~vl~D~~G~vv~l~~r~~s~~-------r~~~ 255 (1165)
T 2qf7_A 184 GRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVE-RARHVESQILGDTHGNVVHLFERDCSVQ-------RRNQ 255 (1165)
T ss_dssp ------------------------------------CCCS-SEEEEEEEEEECTTSCEEEEEEEEEEEE-------ETTE
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecc-CCcEEEEEEEEcCCCcEEEEEeecccce-------eccc
Confidence 6789999999887642 25799999996 4799999999874 332 2331 110 0000
Q ss_pred eeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCeEEEEEecCCCC
Q 021495 237 SVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLRLF-NIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 237 ~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~lf-G~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
... . ..|.. .+++ .+.+.++|.++.+++|+.-+ ++|++++..+| ++|++|||.-+|
T Consensus 256 ~~~-----e----------~~Pa~-~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~vd~~dg-~~~~iEiNpR~~ 314 (1165)
T 2qf7_A 256 KVV-----E----------RAPAP-YLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTG-KFYFIEVNPRIQ 314 (1165)
T ss_dssp EEE-----E----------EESCT-TCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEEEECSCC
T ss_pred ceE-----E----------ecccc-cCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEECCCC-CEEEEEEEcCCC
Confidence 000 0 00110 1221 45688999999999999865 49999983345 799999999876
No 66
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.00 E-value=1.2e-08 Score=96.47 Aligned_cols=137 Identities=10% Similarity=0.071 Sum_probs=82.7
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCC--------CC---CCC-c-cEEEEec---CCh-hHHHH--HHHHHHhCCCeeeeCc
Q 021495 45 QPKLEILARNKGISFVAIDQNRPL--------SD---QGP-F-DVVLHKL---SGM-EWCKI--IEDYRQKHPEVTILDP 105 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl--------~~---qgp-~-DviLhK~---t~~-~~~~~--l~~y~~~hP~v~ViDp 105 (311)
...++..|++.|+.++.+|.+.+- .+ ... + | +..+. |.+ ++... ++. + +.-++++..+
T Consensus 13 ~~~~~~aAk~lG~~viv~d~~~~~p~~~a~~~ad~~~~~~~~~d-l~~~~dvitpe~e~v~~~~l~~-l-e~~~~p~~p~ 89 (320)
T 2pbz_A 13 SLQILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEEMTS-ILNDDGIVVPHGSFVAYLGIEA-I-EKAKARFFGN 89 (320)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTTHHHHHTCTTCSEEEECSCSCC-TTCCSSBCCCBTTHHHHSCHHH-H-HTCCSCCBSC
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCccchhhhcCCeEEECCcHHH-HHhcCCEEEecccchhHHHHHH-H-HHcCCCcCCC
Confidence 445788999999999999987422 11 112 2 1 00000 111 22221 222 2 2467889999
Q ss_pred hhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcc
Q 021495 106 PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF 185 (311)
Q Consensus 106 ~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~ 185 (311)
.++++...||...-+.|.++ +|++|++.. .+++ .++||+|+||.. |+ +|++..++.+ +
T Consensus 90 ~~~l~~~~dr~~~~~~l~~~-------Gip~P~~~~----~ee~-------~i~~PviVKp~~--g~-ggkG~~~v~~-e 147 (320)
T 2pbz_A 90 RRFLKWETTFELQDKALEGA-------GIPRVEVVE----PEDA-------KPDELYFVRIEG--PR-GGSGHFIVEG-S 147 (320)
T ss_dssp SSGGGGGSCHHHHHHHHHHH-------TCCBCCBCC----SCCC-------CSSCCEEEECC---------------C-E
T ss_pred HHHHHHHHhHHHHHHHHHHC-------CcCCCCeeC----HhHc-------CcCCcEEEEECC--CC-CCCCEEEECh-H
Confidence 99999999998777778776 889998872 1111 589999999998 44 5899999999 9
Q ss_pred ccccC----CCCeEEEecccCCCeEEE
Q 021495 186 SLSEL----EPPMLLQEFVNHGGILFK 208 (311)
Q Consensus 186 ~L~~l----~~P~vvQEfInH~G~~~K 208 (311)
+|... +.++++||||+ |..+.
T Consensus 148 el~~~~~~~~~~~IiEEfI~--g~~~~ 172 (320)
T 2pbz_A 148 ELEERLSTLEEPYRVERFIP--GVYLY 172 (320)
T ss_dssp ECSCCCC----CCEEEECCC--SCEEE
T ss_pred HHHHHHHhcCCCEEEEeeec--eEecc
Confidence 98754 25899999997 55543
No 67
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=98.75 E-value=1e-06 Score=84.47 Aligned_cols=226 Identities=14% Similarity=0.175 Sum_probs=125.3
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCCC---CCCCccEEE-Ee-cCC---hhHHHH-------------HHHH-----HHhCC
Q 021495 45 QPKLEILARNKGISFVAIDQNRPLS---DQGPFDVVL-HK-LSG---MEWCKI-------------IEDY-----RQKHP 98 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl~---~qgp~DviL-hK-~t~---~~~~~~-------------l~~y-----~~~hP 98 (311)
...++..|++.|+.++.+|.+.+-. .....|-++ .- ..| ....+. +..| +.+.-
T Consensus 29 ~~~l~~aAk~lG~~vi~vd~~~~~p~~~~~~~ad~~~~~d~~~d~~~~~~l~~l~~~~~vV~pe~~~v~~~gl~~l~~~~ 108 (361)
T 2r7k_A 29 SLHILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVDNFSDIKNEEIQEKLRELNSIVVPHGSFIAYCGLDNVENSF 108 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEEECSSGGGGGSHHHHHHHHHTTEEECCBHHHHHHHCHHHHHHTC
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCcccccccCceEEECCCcccccHHHHHHHHHHcCCEEEeCchhhhHHHHHHHHHHc
Confidence 4457889999999999999885321 112234332 22 223 211111 1111 12245
Q ss_pred CeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceee
Q 021495 99 EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHEL 178 (311)
Q Consensus 99 ~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m 178 (311)
++++.-+..+++...||..+-+.|+++ +|+||++ +. +. ..+.||+|+||.. |+ .++++
T Consensus 109 g~~v~g~~~a~~~e~~k~~~k~~l~~~-------GIptp~~--~~-~~---------~e~~~PvVVK~~~--~a-~GkGv 166 (361)
T 2r7k_A 109 LVPMFGNRRILRWESERSLEGKLLREA-------GLRVPKK--YE-SP---------EDIDGTVIVKFPG--AR-GGRGY 166 (361)
T ss_dssp CSCBBSCGGGGGTTTCHHHHHHHHHHT-------TCCCCCE--ES-SG---------GGCCSCEEEECSC--CC-C---E
T ss_pred CCCcCCCHHHHHHhhhHHHHHHHHHHc-------CcCCCCE--eC-CH---------HHcCCCEEEeeCC--CC-CCCCE
Confidence 677777778888888888766777764 8999976 22 11 1236899999986 33 58999
Q ss_pred EEEcCccccccC------------C--CCeEEEecccCCCeEEEE---EE-ECCEEEE--EEEe--cCCC----Cccccc
Q 021495 179 FLAYDRFSLSEL------------E--PPMLLQEFVNHGGILFKI---YI-IGETIKV--VRRF--SLPN----VSKREL 232 (311)
Q Consensus 179 ~lv~~~~~L~~l------------~--~P~vvQEfInH~G~~~KV---yV-VGd~v~~--~~R~--Slpn----~~~~~~ 232 (311)
.++.+.+++.+. . .++++||||+ |..+.+ |- +++++.+ +.++ +-.| +...+.
T Consensus 167 ~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~--G~e~s~~~f~~~~~~~~e~~~id~r~~~~~dgi~~~~~~~~ 244 (361)
T 2r7k_A 167 FIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV--GTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQ 244 (361)
T ss_dssp EEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC--SEEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHHHH
T ss_pred EEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc--eEEeeEEEEecccCCeeEEEEecceEEeecccceecchhhh
Confidence 999999887541 1 4699999996 766652 11 2343222 2222 1000 000000
Q ss_pred cccceeeeecccccccccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHh------C-CcEeEEEEEEeCCCCCeEEEEE
Q 021495 233 AKVVSVFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRL------G-LRLFNIDMIREHGMRDVFYVID 303 (311)
Q Consensus 233 ~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~L------G-L~lfG~Dvi~~~~tg~~~~ViD 303 (311)
... +.. +..+-.+ .. | +.++ ..+.+.++|.++.++| | ...|+++++++. .| +++|+|
T Consensus 245 ~~~-~~~--p~~v~~G------~~-P--a~l~~~~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~-dg-~i~V~E 310 (361)
T 2r7k_A 245 LEM-NIN--PSYVITG------NI-P--VVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNE-NL-ELVVFE 310 (361)
T ss_dssp HTC-CCC--CCEEEEE------EE-E--CCCCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECT-TS-CEEEEE
T ss_pred hcc-cCC--CceEEec------Cc-C--CcCCHHHHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcC-CC-CEEEEE
Confidence 000 000 0000000 00 1 1122 2567889999999998 3 445679999864 34 589999
Q ss_pred ecCCC
Q 021495 304 INYFP 308 (311)
Q Consensus 304 VNyfP 308 (311)
||.=|
T Consensus 311 IapR~ 315 (361)
T 2r7k_A 311 MSARV 315 (361)
T ss_dssp EESSB
T ss_pred EcCCC
Confidence 99843
No 68
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1e-10 Score=91.48 Aligned_cols=92 Identities=11% Similarity=0.128 Sum_probs=63.2
Q ss_pred HHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcc
Q 021495 108 AIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF 185 (311)
Q Consensus 108 ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~--~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~ 185 (311)
++..+.||..|.+.|.+ .+|++|++. .+.+ .++..+ ....++||+|+||..++| |.++.++.+++
T Consensus 2 a~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~~-~~~~~~--~~~~~~~P~vvKp~~~~~---~~gv~~v~~~~ 68 (108)
T 2cqy_A 2 SSGSSGDKIESKLLAKK-------AEVNTIPGFDGVVKD-AEEAVR--IAREIGYPVMIKASAGGG---GKGMRIAWDDE 68 (108)
T ss_dssp CCCCCCCCCCSTTCCCS-------SCCCCCSCCCSCBSS-HHHHHH--HHHHHCSSEEEEETTSCC---TTTCEEESSHH
T ss_pred chhhhcCHHHHHHHHHH-------cCCCCCCCcccccCC-HHHHHH--HHHhcCCCEEEEECCCCC---CccEEEeCCHH
Confidence 34567777777666654 489999986 5532 111111 123578999999998443 57899999998
Q ss_pred ccccC-------------CCCeEEEecccCCCeEEEEEEEC
Q 021495 186 SLSEL-------------EPPMLLQEFVNHGGILFKIYIIG 213 (311)
Q Consensus 186 ~L~~l-------------~~P~vvQEfInH~G~~~KVyVVG 213 (311)
+|.+. ..++++||||+. .+++.|.|+|
T Consensus 69 el~~~~~~~~~~~~~~~~~~~~lvee~i~g-~~E~~v~v~g 108 (108)
T 2cqy_A 69 ETRDGFRLSSQEAASSFGDDRLLIEKFIDN-PRHISGPSSG 108 (108)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCEEEEECCSS-SSCCCSCCCC
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEeeccCC-CcEEEEEecC
Confidence 77541 468999999963 3588888776
No 69
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=98.34 E-value=2.8e-06 Score=81.90 Aligned_cols=152 Identities=13% Similarity=0.222 Sum_probs=90.4
Q ss_pred HHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCC-eeeeCchhHHHHhcCHHHHHHHHHhc
Q 021495 47 KLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPE-VTILDPPDAIKHLHNRQSMLQDVADL 125 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~-v~ViDp~~ai~~l~dR~~~l~~l~~l 125 (311)
...+..+++|. +..+..+ -..+|++.......-+.. + ..+|+ .-.||=+.....+..|..+...+.+.
T Consensus 19 ~V~~vL~~~g~-w~ev~~~-----~~~~dl~W~~~~~~p~~~-l----~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~ 87 (380)
T 3tig_A 19 EVAKILLASGQ-WKRLKRD-----NPKFNLMLGERNRLPFGR-L----GHEPGLVQLVNYYRGADKLCRKASLVKLIKTS 87 (380)
T ss_dssp HHHHHHHHTTS-EEECCTT-----CSCCSEEECCSSSCCGGG-S----SCSTTCCCEESCCTTTHHHHSHHHHHHHHHHC
T ss_pred HHHHHHHhcCC-eEEeCCC-----CCceeEEEecCCCCCHHH-h----ccCCCcceEEeecCCcccccccHHHHHHHHHh
Confidence 35677888885 3333332 246888875332211111 1 12355 46788888888899999888888652
Q ss_pred cccCCCCccccCcEEEE-ccCC--------------------CCcchhh------HhcCCCCcEEEeeCcCCCCCcceee
Q 021495 126 NLSDCNGKVRVPRQMVI-TKDS--------------------LSIPDQV------FEAGLKLPLVAKPLVVDGSAKSHEL 178 (311)
Q Consensus 126 ~~~~~~~~i~~P~~~~i-~~~~--------------------~~~~~~l------~~~~l~fP~VvKP~~a~GS~~sh~m 178 (311)
... ....=..|++.++ -.+- ++..+.+ ...+-+-++|+||.. || .+.++
T Consensus 88 ~~~-~~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~--~s-rG~GI 163 (380)
T 3tig_A 88 PEL-TETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSS--GA-KGEGI 163 (380)
T ss_dssp HHH-HTTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESC--C-----CC
T ss_pred hhc-ccccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCc--cC-CCCCE
Confidence 100 0112246666666 2110 1111111 124677899999987 55 68999
Q ss_pred EEEcCccccccC----CCCeEEEecccC------CC--eEEEEEEEC
Q 021495 179 FLAYDRFSLSEL----EPPMLLQEFVNH------GG--ILFKIYIIG 213 (311)
Q Consensus 179 ~lv~~~~~L~~l----~~P~vvQEfInH------~G--~~~KVyVVG 213 (311)
.++.+.+++.++ ..++|+|+||.+ +| .++|+||+-
T Consensus 164 ~l~~~~~~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlv 210 (380)
T 3tig_A 164 LISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLV 210 (380)
T ss_dssp BCCSCSHHHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEE
T ss_pred EEeCCHHHHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEE
Confidence 999998887543 568999999986 45 499999984
No 70
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=98.16 E-value=4.7e-07 Score=81.24 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=67.9
Q ss_pred hcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCC--C-CCcceeeEE-EcCcccc
Q 021495 112 LHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD--G-SAKSHELFL-AYDRFSL 187 (311)
Q Consensus 112 l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~--G-S~~sh~m~l-v~~~~~L 187 (311)
.+|+..+.+.|++. +|++|++.++.+.. +..+ ....++||+|+||...+ | + ++.++.+ +.++++|
T Consensus 19 ~l~k~~~k~ll~~~-------GIp~p~~~~~~~~~-ea~~--~a~~lg~PvvvKp~~~~~~~r~-~~gGv~~~v~~~~el 87 (238)
T 1wr2_A 19 AMVEYEAKQVLKAY-------GLPVPEEKLAKTLD-EALE--YAKEIGYPVVLKLMSPQILHKS-DAKVVMLNIKNEEEL 87 (238)
T ss_dssp EECHHHHHHHHHTT-------TCCCCCCEEESSHH-HHHH--HHHHHCSSEEEEEECTTCCCHH-HHTCEEEEECSHHHH
T ss_pred CCCHHHHHHHHHHc-------CcCCCCeEEeCCHH-HHHH--HHHHhCCCEEEEEccCCCCcCC-ccCCEEEeCCCHHHH
Confidence 57899999998874 89999999885321 1111 23458999999998741 0 2 3567777 7999887
Q ss_pred ccC----------------CCCeEEEecccCCCeEEEEEEECCE
Q 021495 188 SEL----------------EPPMLLQEFVNHGGILFKIYIIGET 215 (311)
Q Consensus 188 ~~l----------------~~P~vvQEfInH~G~~~KVyVVGd~ 215 (311)
.+. ..++++||||+ +|+.+-|.|++|.
T Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~-~g~E~~v~v~~d~ 130 (238)
T 1wr2_A 88 KKKWEEIHENAKKYRPDAEILGVLVAPMLK-PGREVIIGVTEDP 130 (238)
T ss_dssp HHHHHHHHHHHHHHCTTCCCCEEEEEECCC-CCEEEEEEEEEET
T ss_pred HHHHHHHHHhhhhhCCCCccceEEEEECCC-CCeEEEEEEEeCC
Confidence 542 15799999997 5899999999886
No 71
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=97.32 E-value=0.00013 Score=70.61 Aligned_cols=91 Identities=20% Similarity=0.077 Sum_probs=64.1
Q ss_pred HHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcC-CCCCcceeeEEEcCccccccC----
Q 021495 116 QSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVV-DGSAKSHELFLAYDRFSLSEL---- 190 (311)
Q Consensus 116 ~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a-~GS~~sh~m~lv~~~~~L~~l---- 190 (311)
+..-+.|++ .+|++|++.++.+..+ ..+ ....++||+|+||... .|..++.++.++.+++++.+.
T Consensus 6 ~~aK~lL~~-------~GIpvp~~~~~~s~ee-a~~--aa~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~ 75 (397)
T 3ufx_B 6 YQAKEILAR-------YGVPVPPGKVAYTPEE-AKR--IAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAI 75 (397)
T ss_dssp HHHHHHHHH-------TTCCCCCEEEESSHHH-HHH--HHHHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHH-------CCCCCCCeEEECCHHH-HHH--HHHHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHh
Confidence 334455555 4899999999854221 112 2345779999999872 233357799999998877541
Q ss_pred ---------CCCeEEEecccCCCeEEEEEEECCEEE
Q 021495 191 ---------EPPMLLQEFVNHGGILFKIYIIGETIK 217 (311)
Q Consensus 191 ---------~~P~vvQEfInH~G~~~KVyVVGd~v~ 217 (311)
...+++|||+++ |+++-|.++.|+.+
T Consensus 76 ~~~~~~g~~~~~vlVEe~v~~-g~El~vgv~~D~~~ 110 (397)
T 3ufx_B 76 LGMNIKGLTVKKVLVAEAVDI-AKEYYAGLILDRAK 110 (397)
T ss_dssp TTCEETTEECCCEEEEECCCE-EEEEEEEEEEETTT
T ss_pred hhhhccCCccceEEEEEeecC-CeeEEEEEEecCCC
Confidence 247999999974 89999999988753
No 72
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=97.29 E-value=0.00015 Score=69.99 Aligned_cols=92 Identities=11% Similarity=0.060 Sum_probs=65.3
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCc-EEEeeCcCC-CCCcceeeEEEcCccccccC-
Q 021495 114 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPLVVD-GSAKSHELFLAYDRFSLSEL- 190 (311)
Q Consensus 114 dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP-~VvKP~~a~-GS~~sh~m~lv~~~~~L~~l- 190 (311)
+.+.+-+.|++. +|++|++.++.+.. +..+ ....++|| +|+||.... |-.++.++.++.+++++.+.
T Consensus 4 ~E~~aK~lL~~~-------GIpvp~~~~~~s~e-ea~~--aa~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~ 73 (388)
T 2nu8_B 4 HEYQAKQLFARY-------GLPAPVGYACTTPR-EAEE--AASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFA 73 (388)
T ss_dssp CHHHHHHHHHHT-------TCCCCCEEEESSHH-HHHH--HHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHH
T ss_pred CHHHHHHHHHHC-------CcCCCCeeEECCHH-HHHH--HHHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHH
Confidence 455666667664 89999999885322 1111 22458899 999998732 22357899999998776431
Q ss_pred ----C---------------CCeEEEecccCCCeEEEEEEECCEE
Q 021495 191 ----E---------------PPMLLQEFVNHGGILFKIYIIGETI 216 (311)
Q Consensus 191 ----~---------------~P~vvQEfInH~G~~~KVyVVGd~v 216 (311)
. .++++|+|+++ |+++-|.++.|+.
T Consensus 74 ~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~-~~E~~v~v~~D~~ 117 (388)
T 2nu8_B 74 ENWLGKRLVTYQTDANGQPVNQILVEAATDI-AKELYLGAVVDRS 117 (388)
T ss_dssp HHHTTSEECCTTSCTTCEECCCEEEEECCCE-EEEEEEEEEEETT
T ss_pred HHHhhhhhhccccCCCCcccceEEEEEcccc-CCcEEEEEEEecc
Confidence 1 36999999974 8999999998875
No 73
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=97.03 E-value=0.013 Score=59.83 Aligned_cols=173 Identities=13% Similarity=0.102 Sum_probs=106.3
Q ss_pred EEEEEeCchhhhccchhHHHHHHHhCCCeEEEee-CCCC-CCCCC--------CccEEEEecCChhHH-HH---------
Q 021495 30 VVGYALTSKKKKSFLQPKLEILARNKGISFVAID-QNRP-LSDQG--------PFDVVLHKLSGMEWC-KI--------- 89 (311)
Q Consensus 30 ~Vgy~~~~kK~~~~~~~~l~~~~~~~gi~~v~iD-~~~p-l~~qg--------p~DviLhK~t~~~~~-~~--------- 89 (311)
+|..+..+--.....-.-|.+.|++.|++...++ ++.- +.+.| ++|+| -|+..-+|. ..
T Consensus 381 ~v~~a~~~~~Ed~~t~~~L~~~a~eaG~~~~~~~~i~dl~~~~~G~l~d~dg~~I~~l-fklypwE~m~~~~~~~~~~~~ 459 (619)
T 2io8_A 381 FVHIMQDKDIEENYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCV-WKTWAWETAFDQIREVSDREF 459 (619)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEESSTTCEECSSSCEECTTSCBCCEE-EESSCHHHHHHHHHHC---CC
T ss_pred EEEEEecCCccchHHHHHHHHHHHHCCCceEEecchHhEEECCCCcEECCCCCEeeeE-EecCCHHHHHHHhhhhccccc
Confidence 5655544433333444457899999999999998 6531 12222 55555 557654443 22
Q ss_pred ---------------HHHHHHhCCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhH
Q 021495 90 ---------------IEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVF 154 (311)
Q Consensus 90 ---------------l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~ 154 (311)
+.+.+ +..++.+|+|+.++- +.||..+....+.. + . ..- .+++. + +.+. . +.
T Consensus 460 ~~~~~~~g~~~~g~~ll~~l-~~~~v~iieP~~~~l-lsNKailalLw~l~--p-~-hp~-LLpT~-f--~~~~--~-l~ 526 (619)
T 2io8_A 460 AAVPIRTGHPQNEVRLIDVL-LRPEVLVFEPLWTVI-PGNKAILPILWSLF--P-H-HRY-LLDTD-F--TVND--E-LV 526 (619)
T ss_dssp SSCCCCSCCSSCCCCHHHHH-TCTTCEEESCGGGGT-TTSTTHHHHHHHHS--T-T-CTT-CCCEE-S--SCCH--H-HH
T ss_pred ccccccccCccchHHHHHHH-HhCCCEEECHHHHHH-hhhHHHHHHHHHhC--C-C-CCC-CCCee-e--cCCc--c-cc
Confidence 22222 357899999999977 89998654444322 1 1 111 22232 1 1111 1 11
Q ss_pred hcCCCCcEEEeeCcCCCCCcceeeEEEcC-cccccc----C-CCCeEEEecccCCCeE-----EEEEEECCEEEE-EEEe
Q 021495 155 EAGLKLPLVAKPLVVDGSAKSHELFLAYD-RFSLSE----L-EPPMLLQEFVNHGGIL-----FKIYIIGETIKV-VRRF 222 (311)
Q Consensus 155 ~~~l~fP~VvKP~~a~GS~~sh~m~lv~~-~~~L~~----l-~~P~vvQEfInH~G~~-----~KVyVVGd~v~~-~~R~ 222 (311)
.. ..|.||+. |. ++.+|.|+.. .+.+.+ + +.++|+|||++-+.++ +-+|+||++... ..|.
T Consensus 527 ~~----~yV~KPi~--gR-eG~nV~i~~~~~~~~~~~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~~R~ 599 (619)
T 2io8_A 527 KT----GYAVKPIA--GR-CGSNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRG 599 (619)
T ss_dssp HH----CEEEEETT--CC-TTTTCEEECTTSCEEEECCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred cC----CEEEccCC--CC-CCCCEEEEeCCChhHhhccccccCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEEEec
Confidence 22 59999999 55 5788999876 332222 2 4679999999987666 999999999885 4787
Q ss_pred c
Q 021495 223 S 223 (311)
Q Consensus 223 S 223 (311)
+
T Consensus 600 ~ 600 (619)
T 2io8_A 600 D 600 (619)
T ss_dssp E
T ss_pred C
Confidence 6
No 74
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=96.91 E-value=0.0006 Score=65.94 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=62.3
Q ss_pred HHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCC-cEEEeeCcCCCC-Ccc-------eeeEEEcCcc
Q 021495 115 RQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKL-PLVAKPLVVDGS-AKS-------HELFLAYDRF 185 (311)
Q Consensus 115 R~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~f-P~VvKP~~a~GS-~~s-------h~m~lv~~~~ 185 (311)
-+.+-+.|++. +|++|++.++.+.. +..+ ....++| |+|+||...+|. -++ .++.++.+++
T Consensus 5 E~~aK~lL~~~-------GIpvp~~~~~~s~~-ea~~--~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~ 74 (395)
T 2fp4_B 5 EYQSKKLMSDN-------GVKVQRFFVADTAN-EALE--AAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPE 74 (395)
T ss_dssp HHHHHHHHHHT-------TCCCCCEEEESSHH-HHHH--HHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHH
T ss_pred HHHHHHHHHHC-------CcCCCCeEEECCHH-HHHH--HHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHH
Confidence 44555666663 89999999885322 1112 2245889 899999754443 122 5699999987
Q ss_pred ccccC-----C---------------CCeEEEecccCCCeEEEEEEECCEE
Q 021495 186 SLSEL-----E---------------PPMLLQEFVNHGGILFKIYIIGETI 216 (311)
Q Consensus 186 ~L~~l-----~---------------~P~vvQEfInH~G~~~KVyVVGd~v 216 (311)
++++. . ..+++|||++ .|+++-|.++.|+.
T Consensus 75 e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~-~~~E~~v~i~~D~~ 124 (395)
T 2fp4_B 75 VVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALD-ISRETYLAILMDRS 124 (395)
T ss_dssp HHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCC-CSEEEEEEEEEETT
T ss_pred HHHHHHHHHhhcchhhhccCCCCCccceEEEEEccC-CceeEEEEEEEccc
Confidence 76431 1 2489999997 48999999998875
No 75
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=92.02 E-value=0.07 Score=52.69 Aligned_cols=170 Identities=16% Similarity=0.272 Sum_probs=89.2
Q ss_pred eCchhhhccchhHHHHHHHhCCCeEEEe-eCC----C----CCCCCCCccEEEEecCChhHH--------------HHHH
Q 021495 35 LTSKKKKSFLQPKLEILARNKGISFVAI-DQN----R----PLSDQGPFDVVLHKLSGMEWC--------------KIIE 91 (311)
Q Consensus 35 ~~~kK~~~~~~~~l~~~~~~~gi~~v~i-D~~----~----pl~~qgp~DviLhK~t~~~~~--------------~~l~ 91 (311)
|+|--.++..+.- .-+|+..|+.+|.. |+. + .+..-.++|||+-++.+ +++ ..++
T Consensus 223 LtpG~~ne~yfEh-afLA~~lG~~Lveg~DL~v~dg~v~~rt~~G~~~VDVIyRRvdd-~~lDpl~~~~dS~lGv~gLl~ 300 (474)
T 3n6x_A 223 LTPGAYNSAYFEH-AFIAQQMGIELVEGQDLFVRNNAVYMRTTEGPKRVDVIYRRIDD-DFIDPLSFRPDSMLGVPGLLS 300 (474)
T ss_dssp ECCCSSSTTHHHH-HHHHHHHTCEEECGGGEEECSSCEEECCTTCCEEECEEEECSCG-GGSCTTTSCTTCSSSCTTHHH
T ss_pred ECCCCchhHHHHH-HHHHhcCCcEEechhheEEECCEEEEecCCCCeEEEEEEEcCCH-HhcCccccCCCcccccHHHHH
Confidence 4455554443321 22567889888753 221 1 11122389999999965 332 4567
Q ss_pred HHHHhCCCeeeeCchhHHHHhcCHHH--HHHHHHhccccCCCCcc-ccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCc
Q 021495 92 DYRQKHPEVTILDPPDAIKHLHNRQS--MLQDVADLNLSDCNGKV-RVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLV 168 (311)
Q Consensus 92 ~y~~~hP~v~ViDp~~ai~~l~dR~~--~l~~l~~l~~~~~~~~i-~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~ 168 (311)
.|.+ -.|.++||+.+- .+.||.. .+-.+.+.-+... .-+ .+|.+..- +.+.. +. ..+.+. -+|+||..
T Consensus 301 A~r~--G~V~i~Na~gsg-v~~dKal~a~Lp~l~~~~lgEe-~il~~VpT~~c~--~~~~~-~~-vl~~l~-~lViKp~~ 371 (474)
T 3n6x_A 301 VYRN--GGVTLANAVGTG-VADDKDTYIYVPEMIRFYLGEE-PILSNVPTYQLS--KADDL-KY-VLDNLA-ELVVKEVQ 371 (474)
T ss_dssp HHHT--TSCEEESCTTTH-HHHSTTTGGGHHHHHHHHHCSC-CSSEECCCEETT--SHHHH-HH-HHHSGG-GEEEEECC
T ss_pred HHHc--CCEEEeCCCchh-hhcCcHHHHHhHHHHHHhCCHh-hhccCCCceecC--CHHHH-HH-HHhchh-heEEEecC
Confidence 7764 489999999985 8888862 2222222111111 111 34433321 11111 11 122333 79999998
Q ss_pred CCCCCcceeeEEE--cCccccccC-----CCC--eEEEecccCC-------C------eEEEEEEE-CCEEEE
Q 021495 169 VDGSAKSHELFLA--YDRFSLSEL-----EPP--MLLQEFVNHG-------G------ILFKIYII-GETIKV 218 (311)
Q Consensus 169 a~GS~~sh~m~lv--~~~~~L~~l-----~~P--~vvQEfInH~-------G------~~~KVyVV-Gd~v~~ 218 (311)
+.| +.+|.+= .+.+++.++ ..| +|+||+|.-+ | .++++|++ |+.+.+
T Consensus 372 g~g---g~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g~~~~v 441 (474)
T 3n6x_A 372 GSG---GYGMLVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGKTVSL 441 (474)
T ss_dssp CE--------EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEESSSEEE
T ss_pred CCC---CCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcCCceEE
Confidence 444 5667652 223444432 567 9999999731 2 57888888 554443
No 76
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=90.09 E-value=6.3 Score=40.26 Aligned_cols=157 Identities=12% Similarity=0.010 Sum_probs=81.5
Q ss_pred HHHHHHHhCCCeEEEee-CCCC-CCC-------C-CCccEEEEecCChhHHHHH-H------------------HHHH--
Q 021495 47 KLEILARNKGISFVAID-QNRP-LSD-------Q-GPFDVVLHKLSGMEWCKII-E------------------DYRQ-- 95 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD-~~~p-l~~-------q-gp~DviLhK~t~~~~~~~l-~------------------~y~~-- 95 (311)
-|.+.|++.|++.+.++ ++.- +.+ + .++|++ -|+..-+|...- . +|..
T Consensus 414 yL~~~a~eaG~~t~~~~~i~dL~~~~~G~l~D~~g~~Id~l-fKLyPwE~m~~~~~~~~~~~~~~~~g~p~~g~~~~~~l 492 (652)
T 2vob_A 414 YCMQAAEAVGLEGKLCILFDEFRFDDNGHVVDSDGVRVRNV-WKTWMWESAITDYYAAREERGENWKPSPKDKVRLCDLL 492 (652)
T ss_dssp HHHHHHHHTTCEEEEEETTTTCEECTTSCEECTTSCBCCEE-EECSCHHHHHHHHHHHHHHHCSSCCCCTTSBCCHHHHH
T ss_pred HHHHHHHHCCCcEEEecchhheEECCCCcEECCCCcEeeEE-EecCCHHHHHHhhhhcccccccccccCccchhHHHHHH
Confidence 36889999999999987 5431 111 2 267776 568776654211 0 1222
Q ss_pred hCC--CeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCC
Q 021495 96 KHP--EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 173 (311)
Q Consensus 96 ~hP--~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~ 173 (311)
... .+.+|+|+.++ .+.||..+ ..|-++.. . ..--.|.+ .+.+. .+... ..|.||.. |-
T Consensus 493 ~~~~~~v~~ieP~wk~-LlsNKaiL-alLW~l~p--~-hp~LLpt~----f~~~~---~~~~~----~yV~KPi~--gR- 553 (652)
T 2vob_A 493 LGDDWEILYFEPMWKV-IPSNKAIL-PMIYHNHP--E-HPAILKAE----YELTD---ELRKH----GYAKKPIV--GR- 553 (652)
T ss_dssp SSSCTTSEEESCGGGG-TTTSTTHH-HHHHHHCT--T-CTTBCCEE----SSCCH---HHHHH----CEEEEECC-----
T ss_pred hcCCCceEEeChhHHH-hhcCHHHH-HHHHhccc--C-CCCCCchh----hcCCC---ccccC----CeEeccCC--CC-
Confidence 245 79999998665 55888653 33333211 1 11123322 12111 11112 49999999 44
Q ss_pred cceeeEEEcCccc-ccc-----CCCCeEEEecccC-----CCeEEEEEEECCEEEE-EEEec
Q 021495 174 KSHELFLAYDRFS-LSE-----LEPPMLLQEFVNH-----GGILFKIYIIGETIKV-VRRFS 223 (311)
Q Consensus 174 ~sh~m~lv~~~~~-L~~-----l~~P~vvQEfInH-----~G~~~KVyVVGd~v~~-~~R~S 223 (311)
++.++.|+..... ..+ -+.++|+|||++- .-..+=+|+||++... ..|-+
T Consensus 554 eG~nV~I~~~~~~~~~~~~g~y~~~~~IyQe~~~lp~f~~~~~~iG~~lvg~~~aGi~iR~~ 615 (652)
T 2vob_A 554 VGSNVIITSGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIGDAFSGTGIRED 615 (652)
T ss_dssp -------------------------CEEEEECCC--CBTTBCCEEEEEEETTEEEEEEEEC-
T ss_pred CCCCEEEEcCCchhhhhcccccCCCCeEEEecccCCccCCcceEEEEEEECCEEEEEEEecC
Confidence 5677888754222 122 1568999999973 2358899999999886 47876
No 77
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=86.55 E-value=0.56 Score=45.56 Aligned_cols=82 Identities=17% Similarity=0.100 Sum_probs=55.0
Q ss_pred cccCcEEEEccCCCCcchhh-HhcCCC-CcEEEeeCcC-CCCCcceeeEEEcCccccccC-----------CC------C
Q 021495 134 VRVPRQMVITKDSLSIPDQV-FEAGLK-LPLVAKPLVV-DGSAKSHELFLAYDRFSLSEL-----------EP------P 193 (311)
Q Consensus 134 i~~P~~~~i~~~~~~~~~~l-~~~~l~-fP~VvKP~~a-~GS~~sh~m~lv~~~~~L~~l-----------~~------P 193 (311)
+..|++.++.+.. +..+.. ....|+ ||+|+|+.+- +|-.++.++.+..+.++.++. .. -
T Consensus 26 ~~~~~~~~~~~~~-~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~ml~~~~~~~~~~~~v~~ 104 (425)
T 3mwd_A 26 QNRFKYARVTPDT-DWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKN 104 (425)
T ss_dssp CSTTCCEEECTTC-CHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCC
T ss_pred cCCcceEEeCCCC-CHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHHHHhhhhhccCCCceEEE
Confidence 4455677775332 222221 234677 9999999773 445567889998888766431 11 2
Q ss_pred eEEEecccCC-CeEEEEEEECCEE
Q 021495 194 MLLQEFVNHG-GILFKIYIIGETI 216 (311)
Q Consensus 194 ~vvQEfInH~-G~~~KVyVVGd~v 216 (311)
+++|++++|+ +++|-+-+.=|+.
T Consensus 105 vlVe~~~~~~~~~E~ylgi~~Dr~ 128 (425)
T 3mwd_A 105 FLIEPFVPHSQAEEFYVCIYATRE 128 (425)
T ss_dssp EEEEECCCCCGGGEEEEEEEEETT
T ss_pred EEEEecccCCCCceEEEEEEecCC
Confidence 8999999986 7899888887765
No 78
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=56.26 E-value=9.4 Score=40.09 Aligned_cols=82 Identities=17% Similarity=0.091 Sum_probs=53.4
Q ss_pred cccCcEEEEccCCCCcchhh-HhcCCC-CcEEEeeCcC-CCCCcceeeEEEcCccccccC---------C--C------C
Q 021495 134 VRVPRQMVITKDSLSIPDQV-FEAGLK-LPLVAKPLVV-DGSAKSHELFLAYDRFSLSEL---------E--P------P 193 (311)
Q Consensus 134 i~~P~~~~i~~~~~~~~~~l-~~~~l~-fP~VvKP~~a-~GS~~sh~m~lv~~~~~L~~l---------~--~------P 193 (311)
+..|++.++... .+..+.. ....|+ +|+|+|+.+- +|-.++.++.+..+.++.++. . . -
T Consensus 26 ~~~~~~~~v~~~-~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~aa~~iLg~~~~~~~p~~~V~g 104 (829)
T 3pff_A 26 QNRFKYARVTPD-TDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKN 104 (829)
T ss_dssp CSTTCCEEECTT-CCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCC
T ss_pred ccCCceEEeCCC-CCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 345567777433 2222221 123455 8999999664 344567788888888776431 1 1 2
Q ss_pred eEEEecccCC-CeEEEEEEECCEE
Q 021495 194 MLLQEFVNHG-GILFKIYIIGETI 216 (311)
Q Consensus 194 ~vvQEfInH~-G~~~KVyVVGd~v 216 (311)
+++|++++|+ +++|-+-+.=|+.
T Consensus 105 vLVE~m~~~~~~~ElYvgI~~Dr~ 128 (829)
T 3pff_A 105 FLIEPFVPHSQAEEFYVCIYATRE 128 (829)
T ss_dssp EEEEECCCCCGGGEEEEEEEEETT
T ss_pred EEEEecccCCCccEEEEEEEecCC
Confidence 8999999986 7899998887775
No 79
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=42.95 E-value=46 Score=30.87 Aligned_cols=83 Identities=13% Similarity=0.215 Sum_probs=49.0
Q ss_pred cCCCCCccEEEEEEeCchh-hhccchh---HHHHHHHhCC--CeEEEeeCCCCCCC---------CCCccEEEEecCChh
Q 021495 21 SGVLQPERLVVGYALTSKK-KKSFLQP---KLEILARNKG--ISFVAIDQNRPLSD---------QGPFDVVLHKLSGME 85 (311)
Q Consensus 21 ~~~~~~~~~~Vgy~~~~kK-~~~~~~~---~l~~~~~~~g--i~~v~iD~~~pl~~---------qgp~DviLhK~t~~~ 85 (311)
.+....+.++||+..+... -++|++. .+.+++++.| +++..++....-++ +..+|+|+- ++-.
T Consensus 19 ~~~~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~--~g~~ 96 (356)
T 3s99_A 19 PGSMAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFT--TSFG 96 (356)
T ss_dssp -------CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEE--CSGG
T ss_pred cccccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEE--CCHH
Confidence 3334566899999986433 3467664 5677888899 88877765432211 234887774 3434
Q ss_pred HHHHHHHHHHhCCCee--eeCc
Q 021495 86 WCKIIEDYRQKHPEVT--ILDP 105 (311)
Q Consensus 86 ~~~~l~~y~~~hP~v~--ViDp 105 (311)
....+.+..+++|+++ ++|.
T Consensus 97 ~~~~~~~vA~~~Pdv~fv~id~ 118 (356)
T 3s99_A 97 YMDPTVKVAKKFPDVKFEHATG 118 (356)
T ss_dssp GHHHHHHHHTTCTTSEEEEESC
T ss_pred HHHHHHHHHHHCCCCEEEEEec
Confidence 4556777778899854 4553
No 80
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=32.17 E-value=1e+02 Score=28.55 Aligned_cols=73 Identities=11% Similarity=0.181 Sum_probs=49.6
Q ss_pred ccEEEEEEeCc-hhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCC------------CCccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~-kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~q------------gp~DviLhK~t~~~~~~~l~~y 93 (311)
+..+|+..+.+ +=|.+ -+|...+.+.|-..+.++.+..-... .=+|+|.-|.........+.+|
T Consensus 43 ~gk~la~lF~e~STRTR---~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~ 119 (333)
T 1duv_G 43 TGKNIALIFEKDSTRTR---CSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEY 119 (333)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECSCHHHHHHHHHH
T ss_pred CCCEEEEEecCCCccHH---HHHHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHHhCCEEEEEcCCchHHHHHHHh
Confidence 56777776643 22221 14677899999999999876422221 2279999999987766667666
Q ss_pred HHhCCCeeeeCch
Q 021495 94 RQKHPEVTILDPP 106 (311)
Q Consensus 94 ~~~hP~v~ViDp~ 106 (311)
. ++||||=.
T Consensus 120 ~----~vPVINa~ 128 (333)
T 1duv_G 120 A----SVPVWNGL 128 (333)
T ss_dssp H----SSCEEESC
T ss_pred C----CCCeEcCC
Confidence 5 79999954
No 81
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=32.07 E-value=35 Score=26.03 Aligned_cols=77 Identities=17% Similarity=0.067 Sum_probs=41.5
Q ss_pred ccchhHHHHHHHhCCCeE--EEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeeeCchhHHHHhcCHHHHH
Q 021495 42 SFLQPKLEILARNKGISF--VAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSML 119 (311)
Q Consensus 42 ~~~~~~l~~~~~~~gi~~--v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l 119 (311)
|+.-.++.++++++|+++ ...+.+.--.....+|+||.=..-......+++..... +++|||+.+-. . +|-...+
T Consensus 17 S~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~~~~Dvil~~pqv~~~~~~~~~~~~~~-~v~vI~~~~yg-~-~~g~~vl 93 (106)
T 1e2b_A 17 SLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNK-PVEVIDSLLYG-K-VDGLGVL 93 (106)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHHHCSEEEECTTSGGGHHHHHHHSSSS-CCCBCCHHHHT-T-TCTTHHH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecHHHHHhhccCCCEEEEccchhhhHHHHHHHhcCC-CceEECHHHcc-C-CCHHHHH
Confidence 455557888999999874 33333331111246899984222112233344433233 59999976653 2 5544444
Q ss_pred HH
Q 021495 120 QD 121 (311)
Q Consensus 120 ~~ 121 (311)
+.
T Consensus 94 ~~ 95 (106)
T 1e2b_A 94 KA 95 (106)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 82
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=31.00 E-value=13 Score=28.05 Aligned_cols=19 Identities=32% Similarity=0.898 Sum_probs=16.4
Q ss_pred EecccCC--CeEEEEEEECCE
Q 021495 197 QEFVNHG--GILFKIYIIGET 215 (311)
Q Consensus 197 QEfInH~--G~~~KVyVVGd~ 215 (311)
+.|+||+ |-+|+|-.+||.
T Consensus 4 E~YLNHPtFGlLy~Vc~~~e~ 24 (89)
T 2xko_C 4 ENYLNHPTFGLLYQICSFGDS 24 (89)
T ss_dssp CCEEEETTTEEEEEEEECC-C
T ss_pred cccccCCccchhheeeeCCCc
Confidence 5699999 999999999986
No 83
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=30.76 E-value=33 Score=19.35 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=15.9
Q ss_pred CCChHHHHHHHHHHHHHhCCc
Q 021495 263 LPPRPLLERLARELRHRLGLR 283 (311)
Q Consensus 263 ~p~~~~~~~lA~~l~~~LGL~ 283 (311)
+|..++..++|+.+|++.|..
T Consensus 4 ipsydfadelakllrqa~g~~ 24 (26)
T 1sn9_A 4 IPSYDFADELAKLLRQAXGXX 24 (26)
T ss_dssp BTTBCHHHHHHHHHHHHTC--
T ss_pred CCccchHHHHHHHHHHhhCcc
Confidence 455677889999999999864
No 84
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=30.15 E-value=2.1e+02 Score=22.80 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=26.5
Q ss_pred ccEEEEEEeCchhhh----ccchh--HHHHHHHhCCCeEEE--eeC
Q 021495 27 ERLVVGYALTSKKKK----SFLQP--KLEILARNKGISFVA--IDQ 64 (311)
Q Consensus 27 ~~~~Vgy~~~~kK~~----~~~~~--~l~~~~~~~gi~~v~--iD~ 64 (311)
...+++|+=...+.+ ++..+ .+.++|.++|+.++. .|.
T Consensus 4 ~~r~~~Y~RvSt~~q~~~~sl~~Q~~~l~~~a~~~g~~i~~~~~D~ 49 (167)
T 3guv_A 4 KIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDA 49 (167)
T ss_dssp CCEEEEEEECSSCHHHHGGGHHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred CcEEEEEEEECCcccccCCCHHHHHHHHHHHHHhCCCEEEEEEeec
Confidence 457899987666554 55544 368899999998754 454
No 85
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=30.12 E-value=1.2e+02 Score=27.89 Aligned_cols=74 Identities=9% Similarity=0.120 Sum_probs=50.1
Q ss_pred ccEEEEEEeCc-hhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCC------------CccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~-kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qg------------p~DviLhK~t~~~~~~~l~~y 93 (311)
+..+|+-.+-+ +=|.+ -+|...+.+.|-..+.++.+..-...| =+|+|.-|.........+.+|
T Consensus 57 ~gk~la~lF~epSTRTR---~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~~~~~~lA~~ 133 (325)
T 1vlv_A 57 KGMTLAMIFEKRSTRTR---LAFETAFAEEGGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYKQETVEKLAEY 133 (325)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHTTCSEEEEESSCHHHHHHHHHH
T ss_pred CCCEEEEEeccCCcchH---HHHHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHhCCEEEEECCChHHHHHHHHh
Confidence 56777776643 22221 146778999999999998764222222 279999999987766666665
Q ss_pred HHhCCCeeeeCchh
Q 021495 94 RQKHPEVTILDPPD 107 (311)
Q Consensus 94 ~~~hP~v~ViDp~~ 107 (311)
. ++||||=.+
T Consensus 134 ~----~vPVINa~~ 143 (325)
T 1vlv_A 134 S----GVPVYNGLT 143 (325)
T ss_dssp H----CSCEEESCC
T ss_pred C----CCCEEeCCC
Confidence 5 799999543
No 86
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=29.41 E-value=16 Score=28.65 Aligned_cols=25 Identities=28% Similarity=0.683 Sum_probs=19.0
Q ss_pred CCeEEEecccCC--CeEEEEEEECCEE
Q 021495 192 PPMLLQEFVNHG--GILFKIYIIGETI 216 (311)
Q Consensus 192 ~P~vvQEfInH~--G~~~KVyVVGd~v 216 (311)
.|+--+.|+||+ |-+|+|-.+||.=
T Consensus 22 ~~ms~E~YLNHPTFGLLyrVc~~~e~q 48 (112)
T 3n5b_B 22 NPENSETYINHPTWGLLYRICMVDESQ 48 (112)
T ss_dssp ----CCCEEEETTTEEEEEEEEEETTE
T ss_pred CCcchhhhccCCccchheeeeecCCcc
Confidence 467778899999 9999999999874
No 87
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=28.35 E-value=1e+02 Score=28.61 Aligned_cols=73 Identities=14% Similarity=0.218 Sum_probs=48.7
Q ss_pred ccEEEEEEeCc-hhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCCC------------ccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGP------------FDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~-kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp------------~DviLhK~t~~~~~~~l~~y 93 (311)
+..+|+-.+.+ +=|.+ -+|...+.+.|-..+.++.+..-...|+ +|+|.-|.........+.+|
T Consensus 44 ~gk~la~lF~e~STRTR---~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~ 120 (335)
T 1dxh_A 44 KRKNIALIFEKTSTRTR---CAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAKF 120 (335)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEECTTTCCBTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcchH---HHHHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHhhCCEEEEecCChhHHHHHHHh
Confidence 46677776643 22221 1466789999999999987653222222 79999999886655555544
Q ss_pred HHhCCCeeeeCch
Q 021495 94 RQKHPEVTILDPP 106 (311)
Q Consensus 94 ~~~hP~v~ViDp~ 106 (311)
-++||||=.
T Consensus 121 ----s~vPVINa~ 129 (335)
T 1dxh_A 121 ----AGVPVFNGL 129 (335)
T ss_dssp ----SSSCEEEEE
T ss_pred ----CCCCEEcCC
Confidence 479999954
No 88
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=27.95 E-value=1.1e+02 Score=28.01 Aligned_cols=74 Identities=9% Similarity=0.139 Sum_probs=47.8
Q ss_pred ccEEEEEEeCch-hhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCCC------------ccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTSK-KKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGP------------FDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~k-K~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp------------~DviLhK~t~~~~~~~l~~y 93 (311)
+..+|+-.+.+. =|.+ -+|...+.+.|-..+.++.+..-...|+ +|+|.-|.........+.+
T Consensus 35 ~gk~la~lF~e~STRTR---~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~- 110 (307)
T 3tpf_A 35 QDKTLAMIFEKNSTRTR---MAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHETLLEFAR- 110 (307)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHHHSSEEEEECSCHHHHHHHHH-
T ss_pred CCCEEEEEecCCCcchH---HhHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChHHHHHHHH-
Confidence 456666655432 2221 1467788999999999987642222222 7999999988655444443
Q ss_pred HHhCCCeeeeCchh
Q 021495 94 RQKHPEVTILDPPD 107 (311)
Q Consensus 94 ~~~hP~v~ViDp~~ 107 (311)
|-++||||=.+
T Consensus 111 ---~~~vPVINag~ 121 (307)
T 3tpf_A 111 ---YSKAPVINALS 121 (307)
T ss_dssp ---HCSSCEEEEEC
T ss_pred ---hCCCCEEeCCC
Confidence 45799999654
No 89
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=27.77 E-value=1.1e+02 Score=28.72 Aligned_cols=73 Identities=11% Similarity=0.053 Sum_probs=49.1
Q ss_pred ccEEEEEEeCc-hhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCCC------------ccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGP------------FDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~-kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp------------~DviLhK~t~~~~~~~l~~y 93 (311)
...+|+..+.+ +=|.+ -+|...+.+.|-..+.++.+..-...|+ +|+|.-|.........+.+|
T Consensus 66 ~Gk~la~lF~e~STRTR---~SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~ 142 (359)
T 2w37_A 66 EGKNIALLFEKSSTRTR---SAFTTASIDLGAHPEYLGQNDIQLGKKESTSDTAKVLGSMFDGIEFRGFKQSDAEILARD 142 (359)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHHHCSEEEEESSCHHHHHHHHHH
T ss_pred CCCEEEEEecCCCccHH---HHHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHhcCEEEEecCChHHHHHHHHh
Confidence 56777776643 22221 2467789999999999987653222222 79999999886665555544
Q ss_pred HHhCCCeeeeCch
Q 021495 94 RQKHPEVTILDPP 106 (311)
Q Consensus 94 ~~~hP~v~ViDp~ 106 (311)
-+++|||=.
T Consensus 143 ----s~vPVINa~ 151 (359)
T 2w37_A 143 ----SGVPVWNGL 151 (359)
T ss_dssp ----SSSCEEEEE
T ss_pred ----CCCCEEcCC
Confidence 479999954
No 90
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=27.54 E-value=1.1e+02 Score=28.43 Aligned_cols=74 Identities=5% Similarity=0.071 Sum_probs=48.0
Q ss_pred ccEEEEEEeCch-hhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCCC------------ccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTSK-KKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGP------------FDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~k-K~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp------------~DviLhK~t~~~~~~~l~~y 93 (311)
+..+|+-.+.+. =|.+ -+|...+.+.|-..+.++.+..-...|+ +|+|.-|.........+.+
T Consensus 62 ~gk~la~lF~e~STRTR---~SFE~A~~~LGg~~i~l~~~~ssl~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~- 137 (339)
T 4a8t_A 62 KNKSLGMIFQQSSTRTR---VSFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLAN- 137 (339)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHHHTTCEEEEECCC-CCSSSSSCHHHHHHHHHHHCSEEEEECSSHHHHHHHHH-
T ss_pred CCceEEEEecCCCchHH---HHHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCcHHHHHHHHH-
Confidence 566777665432 2221 1466789999999999987542222222 8999999988655555554
Q ss_pred HHhCCCeeeeCchh
Q 021495 94 RQKHPEVTILDPPD 107 (311)
Q Consensus 94 ~~~hP~v~ViDp~~ 107 (311)
+-++||||=..
T Consensus 138 ---~~~vPVINag~ 148 (339)
T 4a8t_A 138 ---CATIPVINGMS 148 (339)
T ss_dssp ---HCSSCEEECCC
T ss_pred ---hCCCCEEECCC
Confidence 45799999653
No 91
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=25.89 E-value=1.1e+02 Score=27.93 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=48.2
Q ss_pred ccEEEEEEeCc-hhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCC------------CCccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~-kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~q------------gp~DviLhK~t~~~~~~~l~~y 93 (311)
+..+|+-.+-+ +=|.+ -+|...+.+.|-..+.++.+..-... .=+|+|.-|.........+.+
T Consensus 44 ~gk~~~~lF~e~STRTR---~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la~- 119 (301)
T 2ef0_A 44 KGKVLALLFEKPSLRTR---TTLEVAMVHLGGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGIAARVFRHETVEALAR- 119 (301)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEEEGGGSCTTTCCCHHHHHHHHTTTCSEEEEECSSHHHHHHHHH-
T ss_pred CCCEEEEEeccCCcchH---HHHHHHHHHcCCeEEEECCcccccCCCCchHHHHHHHHHhCCEEEEecCChHHHHHHHH-
Confidence 56677766643 22221 14667899999999999876422211 227999999988665555554
Q ss_pred HHhCCCeeeeCch
Q 021495 94 RQKHPEVTILDPP 106 (311)
Q Consensus 94 ~~~hP~v~ViDp~ 106 (311)
+-+++|||=.
T Consensus 120 ---~~~vPVINa~ 129 (301)
T 2ef0_A 120 ---HAKVPVVNAL 129 (301)
T ss_dssp ---HCSSCEEEEE
T ss_pred ---HCCCCEEeCC
Confidence 4579999954
No 92
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=25.80 E-value=1.8e+02 Score=24.58 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=27.4
Q ss_pred ccEEEEEEeCchhhhccc---hhHHHHHHHhCCCeEEEeeCCC
Q 021495 27 ERLVVGYALTSKKKKSFL---QPKLEILARNKGISFVAIDQNR 66 (311)
Q Consensus 27 ~~~~Vgy~~~~kK~~~~~---~~~l~~~~~~~gi~~v~iD~~~ 66 (311)
+..+||+.++.-- ..|. ...+.+.|+++|+.++..+...
T Consensus 4 ~~~~Ig~i~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 45 (291)
T 3l49_A 4 EGKTIGITAIGTD-HDWDLKAYQAQIAEIERLGGTAIALDAGR 45 (291)
T ss_dssp TTCEEEEEESCCS-SHHHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCcEEEEEeCCCC-ChHHHHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 4678999988543 2332 3357888999999998876643
No 93
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=25.78 E-value=2.1e+02 Score=21.39 Aligned_cols=81 Identities=26% Similarity=0.225 Sum_probs=45.3
Q ss_pred ccchhHHHHHHHhCCCeE--EEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHh-CCCeeeeCchhHHHHhcCHHHH
Q 021495 42 SFLQPKLEILARNKGISF--VAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQK-HPEVTILDPPDAIKHLHNRQSM 118 (311)
Q Consensus 42 ~~~~~~l~~~~~~~gi~~--v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~-hP~v~ViDp~~ai~~l~dR~~~ 118 (311)
|+...++.++++++|+++ ...+...--.....+|+||-=..=......+++.... +-.+.+|||.... .+|....
T Consensus 18 Sll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv~~I~~~~y~--~~d~~~v 95 (109)
T 2l2q_A 18 SMLVQRIEKYAKSKNINATIEAIAETRLSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEIINTIDYG--TMNGEKV 95 (109)
T ss_dssp CHHHHHHHHHHHHHTCSEEEEEECSTTHHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCEEECCHHHHH--HTCHHHH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecHHHHHhhcCCCCEEEECCccHHHHHHHHHHhcccCCCEEEEChHHhc--cCCHHHH
Confidence 355567888899999863 3333332111124689987533211223444443332 3457779998774 4677766
Q ss_pred HHHHHh
Q 021495 119 LQDVAD 124 (311)
Q Consensus 119 l~~l~~ 124 (311)
++.+.+
T Consensus 96 l~~i~~ 101 (109)
T 2l2q_A 96 LQLAIN 101 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 94
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=25.74 E-value=1.2e+02 Score=27.82 Aligned_cols=73 Identities=11% Similarity=0.030 Sum_probs=48.8
Q ss_pred ccEEEEEEeCc-hhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCCC------------ccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGP------------FDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~-kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp------------~DviLhK~t~~~~~~~l~~y 93 (311)
...+|+-.+-+ +=|.+ -+|...+.+.|-..+.++.+..-...|+ +|+|.-|.........+.
T Consensus 45 ~gk~l~~lF~e~STRTR---~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA-- 119 (321)
T 1oth_A 45 QGKSLGMIFEKRSTRTR---LSTETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQSDLDTLA-- 119 (321)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHHHTTCEEEEEETTTSCBTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHH--
T ss_pred CCCEEEEEecCCCcchH---HHHHHHHHHcCCeEEEECCCcCcCCCCCCHHHHHHHHHHhCCEEEEeCCChhHHHHHH--
Confidence 56777776643 22221 1467789999999999988653222222 799999998866555554
Q ss_pred HHhCCCeeeeCch
Q 021495 94 RQKHPEVTILDPP 106 (311)
Q Consensus 94 ~~~hP~v~ViDp~ 106 (311)
+|-+++|||=.
T Consensus 120 --~~~~vPVINa~ 130 (321)
T 1oth_A 120 --KEASIPIINGL 130 (321)
T ss_dssp --HHCSSCEEESC
T ss_pred --HhCCCCEEcCC
Confidence 44589999954
No 95
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=25.51 E-value=1.1e+02 Score=28.17 Aligned_cols=74 Identities=8% Similarity=0.128 Sum_probs=45.2
Q ss_pred ccEEEEEEeCch-hhhccchhHHHHHHHhCCCeEEEeeCCCC-CC------C-----CCCccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTSK-KKKSFLQPKLEILARNKGISFVAIDQNRP-LS------D-----QGPFDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~k-K~~~~~~~~l~~~~~~~gi~~v~iD~~~p-l~------~-----qgp~DviLhK~t~~~~~~~l~~y 93 (311)
+..+|+-.+.+. =|.+ -+|...+.+.|-..+.++.+.. +. + ..=+|+|.-|.........+.+|
T Consensus 47 ~gk~la~lF~e~STRTR---~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~~~~~~lA~~ 123 (323)
T 3gd5_A 47 HGKVLGLVFLKASTRTR---VSFTVAMYQLGGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFAQTELEEYAHY 123 (323)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEC----------CCHHHHHHHHTTTCSEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcchH---hhHHHHHHHcCCeEEEeCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHHHh
Confidence 456777665432 2221 1467788999999999987542 11 1 12289999999886665556555
Q ss_pred HHhCCCeeeeCchh
Q 021495 94 RQKHPEVTILDPPD 107 (311)
Q Consensus 94 ~~~hP~v~ViDp~~ 107 (311)
. ++||||=.+
T Consensus 124 ~----~vPVINag~ 133 (323)
T 3gd5_A 124 A----GIPVINALT 133 (323)
T ss_dssp H----CSCEEEEEC
T ss_pred C----CCCEEeCCC
Confidence 4 799998654
No 96
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=24.51 E-value=2.3e+02 Score=23.79 Aligned_cols=78 Identities=12% Similarity=0.151 Sum_probs=43.9
Q ss_pred CCccEEEEEEeCchhhhccc---hhHHHHHHHhCCCeEEEeeCCCCCCC---------CCCccEEEEecCChhHHHHHHH
Q 021495 25 QPERLVVGYALTSKKKKSFL---QPKLEILARNKGISFVAIDQNRPLSD---------QGPFDVVLHKLSGMEWCKIIED 92 (311)
Q Consensus 25 ~~~~~~Vgy~~~~kK~~~~~---~~~l~~~~~~~gi~~v~iD~~~pl~~---------qgp~DviLhK~t~~~~~~~l~~ 92 (311)
.++..+||+.++.-. ..|. ...+.+.|+++|+.++..+....... +..+|.||-=..+. ...++.
T Consensus 4 ~~~s~~Igvi~~~~~-~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~ 80 (276)
T 3jy6_A 4 TQSSKLIAVIVANID-DYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQE 80 (276)
T ss_dssp -CCCCEEEEEESCTT-SHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHH
T ss_pred CCCCcEEEEEeCCCC-chHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHH
Confidence 345679999987643 2222 22467789999999988876543221 24566555444432 333444
Q ss_pred HHHhCCCeeeeCc
Q 021495 93 YRQKHPEVTILDP 105 (311)
Q Consensus 93 y~~~hP~v~ViDp 105 (311)
..+..-.++++|.
T Consensus 81 l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 81 ILHQQMPVVSVDR 93 (276)
T ss_dssp HHTTSSCEEEESC
T ss_pred HHHCCCCEEEEec
Confidence 4333333555554
No 97
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=24.39 E-value=1.2e+02 Score=27.83 Aligned_cols=74 Identities=7% Similarity=0.093 Sum_probs=48.7
Q ss_pred ccEEEEEEeCc-hhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCC------------CCccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~-kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~q------------gp~DviLhK~t~~~~~~~l~~y 93 (311)
+..+|+-.+.+ +=|.+ -+|...+.+.|-..+.++.+..-... .=+|+|.-|.........+.+
T Consensus 45 ~gk~la~lF~e~STRTR---~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~- 120 (315)
T 1pvv_A 45 EGKTLAMIFQKPSTRTR---VSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAK- 120 (315)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHHHTTSEEEEEEGGGSTTTTTCCHHHHHHHHTTTCSEEEEECSSHHHHHHHHH-
T ss_pred CCCEEEEEecCCCcchH---HHHHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHhCcEEEEecCchHHHHHHHH-
Confidence 56777776643 22221 14677899999999999875422211 227999999988665555554
Q ss_pred HHhCCCeeeeCchh
Q 021495 94 RQKHPEVTILDPPD 107 (311)
Q Consensus 94 ~~~hP~v~ViDp~~ 107 (311)
|-++||||=.+
T Consensus 121 ---~~~vPVINa~~ 131 (315)
T 1pvv_A 121 ---YATVPVINGLS 131 (315)
T ss_dssp ---HCSSCEEEEEC
T ss_pred ---hCCCCEEcCCC
Confidence 45799999544
No 98
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=24.35 E-value=1.3e+02 Score=28.28 Aligned_cols=74 Identities=5% Similarity=0.064 Sum_probs=48.2
Q ss_pred ccEEEEEEeCch-hhhccchhHHHHHHHhCCCeEEEeeCCCCCCCC------------CCccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTSK-KKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~k-K~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~q------------gp~DviLhK~t~~~~~~~l~~y 93 (311)
...+|+-.+.+. =|.+ -+|...+.+.|-..+.++.+..-... .=+|+|.-|.........+.+
T Consensus 40 ~gK~la~lF~epSTRTR---~SFE~A~~~LGg~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~~~~~~~~lA~- 115 (355)
T 4a8p_A 40 KNKSLGMIFQQSSTRTR---VSFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLAN- 115 (355)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHHHTTCEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECSSHHHHHHHHH-
T ss_pred CCCEEEEEecCCChhhH---hhHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCcHHHHHHHHH-
Confidence 566777665432 2221 14677899999999999875421111 228999999988655555544
Q ss_pred HHhCCCeeeeCchh
Q 021495 94 RQKHPEVTILDPPD 107 (311)
Q Consensus 94 ~~~hP~v~ViDp~~ 107 (311)
+-++||||=..
T Consensus 116 ---~~~vPVINag~ 126 (355)
T 4a8p_A 116 ---CATIPVINGMS 126 (355)
T ss_dssp ---HCSSCEEECCC
T ss_pred ---hCCCCEEeCCC
Confidence 45899999643
No 99
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=24.05 E-value=1.4e+02 Score=27.95 Aligned_cols=71 Identities=10% Similarity=0.111 Sum_probs=47.1
Q ss_pred ccEEEEEEeCc-hhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCCC------------ccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGP------------FDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~-kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp------------~DviLhK~t~~~~~~~l~~y 93 (311)
...+|+-.+-+ +=|.+ -+|...+.+.|-..+.++.+..-...|+ +|+|+.|.......+.+.
T Consensus 69 ~GK~la~lF~epSTRTR---~SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~la-- 143 (358)
T 4h31_A 69 LGKNIALIFEKASTRTR---CAFEVAAFDQGAQVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRGFGQAIVEELG-- 143 (358)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHH--
T ss_pred CCCEEEEEeCCCChhhH---HHHHHHHHHcCCeEEECCcccccccCccchhHHHHHhhccCceeEecccchhHHHHhh--
Confidence 45677776643 32222 1466688999999999887653322232 899999998865544444
Q ss_pred HHhCCCeeeeC
Q 021495 94 RQKHPEVTILD 104 (311)
Q Consensus 94 ~~~hP~v~ViD 104 (311)
++.++||||
T Consensus 144 --~~s~vPVIN 152 (358)
T 4h31_A 144 --AFAGVPVWN 152 (358)
T ss_dssp --HHSSSCEEE
T ss_pred --hhccCceEC
Confidence 345799998
No 100
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}
Probab=23.61 E-value=31 Score=35.78 Aligned_cols=68 Identities=12% Similarity=0.201 Sum_probs=42.4
Q ss_pred eCchhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCCCccE-------EEEecCChhHHHHHHHHHHhCCCeeee
Q 021495 35 LTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDV-------VLHKLSGMEWCKIIEDYRQKHPEVTIL 103 (311)
Q Consensus 35 ~~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~Dv-------iLhK~t~~~~~~~l~~y~~~hP~v~Vi 103 (311)
++-...+.|+...+.++.++.||+++++|+++.+.+-+--.. +.|+-+ .-.-+.+++..++||++.+-
T Consensus 451 ~tnPevr~~i~~~l~~ll~~~GIDy~K~D~nr~i~~~~~~~~~~~~q~~~~~~y~-~g~y~ll~~l~~~~P~v~ie 525 (745)
T 3mi6_A 451 MARPEVVDYLFKLMSQMIESANLDYIKWDMNRYATEMFSSRLTSDQQLELPHRYI-LGVYQLYARLTQAYPNVLFE 525 (745)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCSEEEECCCSCCCSCCCSSSCGGGGGGHHHHHH-HHHHHHHHHHHHHCTTCEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCcccCCCcCccccccHHHHHHH-HHHHHHHHHHHhhCCCeEEE
Confidence 333456777777777888999999999999998764221000 011100 01124477778899988754
No 101
>1b78_A Pyrophosphatase; structural genomics, hyperthermal protein; 2.20A {Methanocaldococcus jannaschii} SCOP: c.51.4.1 PDB: 2mjp_A*
Probab=23.16 E-value=31 Score=29.63 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEE-ecCCCCCC
Q 021495 270 ERLARELRHRLGLRLFNIDMIREHGMRDVFYVID-INYFPGRY 311 (311)
Q Consensus 270 ~~lA~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViD-VNyfPG~~ 311 (311)
..=|+.+.+.+|+ -+|.|+ +| ++|| .|.+||-|
T Consensus 55 ~~KA~~a~~~~g~-----p~laDD-SG---L~vdAL~G~PGvy 88 (193)
T 1b78_A 55 EFGAKWVYNILKK-----PVIVED-SG---FFVEALNGFPGTY 88 (193)
T ss_dssp HHHHHHHHHHHCS-----CEEEEE-EE---EEEGGGTTCEETT
T ss_pred HHHHHHHHHHHCC-----CEEEEc-CE---EEEhhcCCCCccc
Confidence 3445666777775 467774 67 4666 49999987
No 102
>2avx_A Regulatory protein SDIA; homoserine lactone, quorum sensing, transcription; HET: HTF; NMR {Escherichia coli}
Probab=22.91 E-value=94 Score=24.91 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=38.1
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeeeCch
Q 021495 45 QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPP 106 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~ 106 (311)
+..+.++++..|++.+.+-...|.....| ++++.-....+|. +.|.++ +..-+||.
T Consensus 27 ~~~l~~~~~~lGf~~~~y~~~~~~~~~~~-~~~~~~~yp~~W~---~~Y~~~--~y~~~DPv 82 (171)
T 2avx_A 27 YHEIELQAQQLEYDYYSLCVRHPVPFTRP-KVAFYTNYPEAWV---SYYQAK--NFLAIDPV 82 (171)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEECCTTSCC-EEEEEECCCHHHH---HHHHHT--TGGGTCGG
T ss_pred HHHHHHHHHHcCCCeEEEEeecCCCCCCC-cEehhcCCCHHHH---HHHHHC--CCeEeChh
Confidence 34567788899999877765444443444 6677777776774 477766 67778884
No 103
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=22.81 E-value=61 Score=31.65 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.2
Q ss_pred CCcEeEEEEEEeCCCCCeEEEEEecC
Q 021495 281 GLRLFNIDMIREHGMRDVFYVIDINY 306 (311)
Q Consensus 281 GL~lfG~Dvi~~~~tg~~~~ViDVNy 306 (311)
=+.++|+|++++. +| +++|+|-|.
T Consensus 141 ~~~i~~~Dl~r~~-dG-~~~vlEdn~ 164 (474)
T 3n6x_A 141 YAHIAGVDLVRTG-EN-DFYVLEDNL 164 (474)
T ss_dssp SCSEEEEEEEECS-SS-CEEEEEEEC
T ss_pred EEEEEEEEEEECC-CC-CEEEEEeCC
Confidence 3789999999985 45 799999996
No 104
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=22.75 E-value=1.3e+02 Score=28.04 Aligned_cols=74 Identities=7% Similarity=0.088 Sum_probs=46.2
Q ss_pred ccEEEEEEeCch-hhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCC------------CccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTSK-KKKSFLQPKLEILARNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~k-K~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qg------------p~DviLhK~t~~~~~~~l~~y 93 (311)
+..+|+-.+.+. =|.+ -+|...+.+.|-..+.++.+..-...| =+|+|.-|.........+.+
T Consensus 69 ~gK~la~lF~epSTRTR---~SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~y~D~IviR~~~~~~~~~lA~- 144 (340)
T 4ep1_A 69 QGKILGLIFDKHSTRTR---VSFEAGMVQLGGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAK- 144 (340)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEEESCC------CCTTHHHHHHHHHCSEEEEECSCHHHHHHHHH-
T ss_pred CCceEEEEecCCCccHH---HHHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHHH-
Confidence 456777665432 2221 146678899999999998763211112 17999999988655555544
Q ss_pred HHhCCCeeeeCchh
Q 021495 94 RQKHPEVTILDPPD 107 (311)
Q Consensus 94 ~~~hP~v~ViDp~~ 107 (311)
+-++||||=.+
T Consensus 145 ---~~~vPVINag~ 155 (340)
T 4ep1_A 145 ---ESSIPVINGLT 155 (340)
T ss_dssp ---HCSSCEEEEEC
T ss_pred ---hCCCCEEeCCC
Confidence 45799999543
No 105
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=22.44 E-value=1.3e+02 Score=27.44 Aligned_cols=89 Identities=13% Similarity=0.253 Sum_probs=55.3
Q ss_pred ccEEEEEEeCch-hhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCC-------------CccEEEEecCChhHHHHHHH
Q 021495 27 ERLVVGYALTSK-KKKSFLQPKLEILARNKGISFVAIDQNRPLSDQG-------------PFDVVLHKLSGMEWCKIIED 92 (311)
Q Consensus 27 ~~~~Vgy~~~~k-K~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qg-------------p~DviLhK~t~~~~~~~l~~ 92 (311)
...+|+-.+.+. =|.+ -+|...+.+.|-..+.++.+..--..| -+|+|.-|.........+.+
T Consensus 35 ~gk~la~lF~e~STRTR---~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~~~~~~la~ 111 (304)
T 3r7f_A 35 TGKFAANLFFEPSTRTR---FSFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSEDEYYEELVS 111 (304)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHHHTTCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSSTTCHHHHHH
T ss_pred CCCEEEEEecCCChhHH---HhHHHHHHHCCCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCChhHHHHHHH
Confidence 456777665433 2221 147778999999999998864322222 16999999988665555553
Q ss_pred HHHhCCCeeeeCchhH-----HHHhcCHHHHHHHH
Q 021495 93 YRQKHPEVTILDPPDA-----IKHLHNRQSMLQDV 122 (311)
Q Consensus 93 y~~~hP~v~ViDp~~a-----i~~l~dR~~~l~~l 122 (311)
+.++||||=.+. .+.|.|=+++.+..
T Consensus 112 ----~~~vPVINagdg~~~HPtQaLaDl~Ti~e~~ 142 (304)
T 3r7f_A 112 ----QVNIPILNAGDGCGQHPTQSLLDLMTIYEEF 142 (304)
T ss_dssp ----HCSSCEEESCCTTSCCHHHHHHHHHHHHHHH
T ss_pred ----hCCCCEEeCCCCCCcCcHHHHHHHHHHHHHh
Confidence 468999986531 34445544444443
No 106
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=21.21 E-value=1.2e+02 Score=27.80 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=48.1
Q ss_pred ccEEEEEEeCc-hhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCCC------------ccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGP------------FDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~-kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp------------~DviLhK~t~~~~~~~l~~y 93 (311)
+..+|+-.+-+ +=|.+ -+|...+.+.|-..+.++.+..-...|+ +|+|.-|.........+.+
T Consensus 38 ~gk~l~~lF~e~STRTR---~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~- 113 (307)
T 2i6u_A 38 GPRGVAVIFDKNSTRTR---FSFELGIAQLGGHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWRTFGQERLDAMAS- 113 (307)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHHHTTCEEEEEEGGGSGGGGTCCHHHHHHHHHHHEEEEEEECSSHHHHHHHHH-
T ss_pred CCCEEEEEecCCCcchH---HHHHHHHHHcCCeEEEECCccccCCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHHh-
Confidence 56777776643 22211 1467789999999999987642222222 7999999988665555554
Q ss_pred HHhCCCeeeeCch
Q 021495 94 RQKHPEVTILDPP 106 (311)
Q Consensus 94 ~~~hP~v~ViDp~ 106 (311)
+-+++|||=.
T Consensus 114 ---~~~vPVINa~ 123 (307)
T 2i6u_A 114 ---VATVPVINAL 123 (307)
T ss_dssp ---HCSSCEEESC
T ss_pred ---hCCCCEEcCC
Confidence 4579999944
No 107
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=20.59 E-value=2.7e+02 Score=23.95 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=38.5
Q ss_pred ccEEEEEEeCchhhhcc--chhHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeeeC
Q 021495 27 ERLVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILD 104 (311)
Q Consensus 27 ~~~~Vgy~~~~kK~~~~--~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViD 104 (311)
+..+||+.++.-.-.-| ....+.+.|+++|++++-.+.+... ....+.++.++.+.++.+++.
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~---------------~~~~~~i~~~~~~~vdgiIi~ 66 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDI---------------PNQLSQIENMVTKGVKVLVIA 66 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTTCH---------------HHHHHHHHHHHHHTCSEEEEC
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCCCH---------------HHHHHHHHHHHHcCCCEEEEE
Confidence 45789998876532211 2235678899999998777643211 122344555555556666665
Q ss_pred chh
Q 021495 105 PPD 107 (311)
Q Consensus 105 p~~ 107 (311)
|..
T Consensus 67 ~~~ 69 (330)
T 3uug_A 67 SID 69 (330)
T ss_dssp CSS
T ss_pred cCC
Confidence 543
Done!