RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021495
(311 letters)
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4-5/6 phosphate, inositol phosphate,
inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB:
2qb5_A* 2odt_X
Length = 346
Score = 290 bits (744), Expect = 1e-97
Identities = 91/299 (30%), Positives = 150/299 (50%), Gaps = 17/299 (5%)
Query: 26 PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLS--- 82
+ VGY L+ KK K L R +G+ V ++ +RP+ +QGP DV++HKL+
Sbjct: 16 LKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVI 75
Query: 83 ---------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGK 133
+E ++Y HPE +LDP AI+ L +R + + + + +
Sbjct: 76 LEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDR 135
Query: 134 VRVPRQMVITK-DSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEP 192
+ P M +T + + GL P + K V G+ SHE+ + +++ L+ ++P
Sbjct: 136 ICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQP 194
Query: 193 PMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASAD 252
P ++Q F+NH +L+K++++GE+ VV+R SL N S + F VS +S+
Sbjct: 195 PCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSV 254
Query: 253 DADLDP--GIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPG 309
+LD G+ E P ++ L+R LR LG+ LF ID+I + VIDIN FPG
Sbjct: 255 LTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQTGQ-HAVIDINAFPG 312
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 266 bits (680), Expect = 2e-88
Identities = 58/306 (18%), Positives = 118/306 (38%), Gaps = 26/306 (8%)
Query: 21 SGVLQPERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHK 80
+ + + + L K+K+ + + L D+ P ++ +
Sbjct: 4 GSMTTKQTVSLFIWLPESKQKTLFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKR 63
Query: 81 LSG-MEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQ 139
+ + Y + HP+V L+ + +R+ + + + +P
Sbjct: 64 THPVGKMADEMRKYEKDHPKVLFLESSAIHDMMSSREEINALLIK-------NNIPIPNS 116
Query: 140 MVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEF 199
+ + + L LP + KP G+ +H++ + ++ + ++ P L Q +
Sbjct: 117 FSVKSKE-EVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHY 175
Query: 200 VNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVV-------SVFRFPRV-------- 244
+NH + K++ IG T+K R SLPNV + + V + +P
Sbjct: 176 INHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDII 235
Query: 245 -SSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVID 303
+SA DP + L + LA ++R LG++L ID I+E+ + V+D
Sbjct: 236 ENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQGN-PLVVD 294
Query: 304 INYFPG 309
+N FP
Sbjct: 295 VNVFPS 300
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 2e-09
Identities = 44/310 (14%), Positives = 101/310 (32%), Gaps = 74/310 (23%)
Query: 9 HKEDEEDEEEKQSGVLQPERL------VVGYALTSKKKKSFLQPKLEILARNKGI----- 57
E + + + Q +RL Y ++ + L+ L L K +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 58 -----SFVAID--QNRPLSDQGPFDV-------------VLHKLSGMEWCKIIEDYRQ-- 95
++VA+D + + + F + VL L + +I ++
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRS 217
Query: 96 ---KHPEVTILDPPDAIKHLHNRQS------MLQDVADLNLSDC-NGKVRVPRQMVITKD 145
+ ++ I ++ L + +L +V + + N ++ ++ T+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI---LLTTRF 274
Query: 146 SLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGI 205
+ D + A + + + L L Y +L P +L
Sbjct: 275 K-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLT------TN 326
Query: 206 LFKIYIIGETIKV-VRRFS-LPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAEL 263
++ II E+I+ + + +V+ +L ++ L+P AE
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-------------NVLEP--AEY 371
Query: 264 PPRPLLERLA 273
R + +RL+
Sbjct: 372 --RKMFDRLS 379
Score = 29.1 bits (64), Expect = 2.2
Identities = 29/240 (12%), Positives = 69/240 (28%), Gaps = 42/240 (17%)
Query: 2 RLNGEISHKEDEEDEEEKQSGVLQ----PERLVVGYAL----TSKKKKSF-LQPKLEILA 52
R + + K + + +L+ L+V L +K +F L K+ +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---LLNVQNAKAWNAFNLSCKILLTT 272
Query: 53 RNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDPPDAI-- 109
R K ++ + L K ++ Q P + P +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 110 --KHLHNRQSMLQDVADLNLSDCNGKVRV------P-------RQMVITKDSLSIPDQVF 154
+ + + + + +N + P ++ + S IP +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 155 ----------EAGLKLPLVAKPLVVDGSAKSHELFL--AYDRFSLSELEPPMLLQEFVNH 202
+ + + + K +V+ K + + Y + L + V+H
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 40.1 bits (94), Expect = 5e-04
Identities = 34/278 (12%), Positives = 83/278 (29%), Gaps = 62/278 (22%)
Query: 52 ARNKGISFVAIDQNR---PLSDQGP----FDVVL-HKLSGMEWCKIIEDYRQKHPEVTIL 103
A G+ + + L ++ V L +S + ++
Sbjct: 20 AEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTALG--IPVV 77
Query: 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEA--GLKLP 161
+ P+ I+ ++ + L+ + P+ + T ++ P
Sbjct: 78 NRPEVIEACGDKWATSV-----ALAKAG--LPQPKTALATD-----REEALRLMEAFGYP 125
Query: 162 LVAKPL-------VVDGSAKSHELFLAYDRFSLSELE-PPMLLQEFVNHGGILFKIYIIG 213
+V KP+ + + L + +QE+V G +++++G
Sbjct: 126 VVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVG 185
Query: 214 -ETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERL 272
I + R S + ++ A++ L +A L
Sbjct: 186 ERAIAAIYRRSA---------------HWITNTARGGQAENCPLTEEVAR---------L 221
Query: 273 ARELRHRLGLRLFNIDMIR-EHGMRDVFYVIDINYFPG 309
+ + +G + +D+ E G V ++N+
Sbjct: 222 SVKAAEAVGGGVVAVDLFESERG----LLVNEVNHTME 255
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 39.8 bits (93), Expect = 8e-04
Identities = 27/207 (13%), Positives = 68/207 (32%), Gaps = 40/207 (19%)
Query: 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAG-LK 159
I+ P A + ++ +M + + R T +++ ++ AG ++
Sbjct: 101 VIVSPYAACELCFDKYTMYEYCLRQG-------IAHAR----TYATMASFEEALAAGEVQ 149
Query: 160 LPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVV 219
LP+ KP S + + + L +++QE ++G+ + V
Sbjct: 150 LPVFVKPRNGSASIEVRRVETVEEVEQLFSKNTDLIVQE-----------LLVGQELGV- 197
Query: 220 RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHR 279
+ ++ ++ + + + + + R + L +
Sbjct: 198 --DAYVDLISGKVTSIFIKEKLTMRAG----------ETDKSRSVLRDDVFELVEHVLDG 245
Query: 280 LGLR-LFNIDMIREHGMRDVFYVIDIN 305
GL + D+ G Y+ +IN
Sbjct: 246 SGLVGPLDFDLFDVAG---TLYLSEIN 269
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.006
Identities = 43/269 (15%), Positives = 81/269 (30%), Gaps = 83/269 (30%)
Query: 51 LARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIK 110
G S + I N P++ + +H G + +I E+Y + D
Sbjct: 1653 FKDTYGFSILDIVINNPVN------LTIH-FGGEKGKRIRENY----SAMIFETIVDG-- 1699
Query: 111 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKP-LVV 169
+ + ++N T + + L +P L +
Sbjct: 1700 ----KLKTEKIFKEINEH-------------STSYTFRSEKGL----LSATQFTQPALTL 1738
Query: 170 DGSA-----KSHELFLAYDRF---SLSE---LEPPMLLQEFVNHGGILFKIYIIGETIKV 218
A KS L A F SL E L + ++ I ++V
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAAL---------ASLADVMS----IESLVEV 1785
Query: 219 VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPG-IAELPPRPLLERLARELR 277
V R + V+V PR ++ ++PG +A + L+ + +
Sbjct: 1786 VF--------YRGMTMQVAV---PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 278 HRLGLRL----FNIDMIREHGMRDVFYVI 302
R G + +N++ + YV
Sbjct: 1835 KRTGWLVEIVNYNVE-----NQQ---YVA 1855
Score = 35.0 bits (80), Expect = 0.032
Identities = 37/266 (13%), Positives = 71/266 (26%), Gaps = 104/266 (39%)
Query: 3 LNGEISHKE--DEEDEE------EKQSGVL------QPERLVVGYALTSKKKKSFLQPKL 48
++G++ ++ E +E + G+L QP ++ A K L P
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD 1756
Query: 49 EILARNKGIS---FVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDP 105
A G S + A L L+ ++
Sbjct: 1757 ATFA---GHSLGEYAA----------------LASLAD------------------VMSI 1779
Query: 106 PDAIKHLHNRQSMLQDVA--DLNLSDCNGKVRV-PRQMVITKDSLSIPDQVFEAGLKLPL 162
++ + R +Q D G + + P ++ S + +
Sbjct: 1780 ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA-----ASFSQEALQY------ 1828
Query: 163 VAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNH---GGILFKIYII-GET--- 215
VV+ K + E VN+ Y+ G+
Sbjct: 1829 -----VVERVGKRTGWLV-----------------EIVNYNVENQ----QYVAAGDLRAL 1862
Query: 216 ---IKVVRRFSLPNVSKRELAKVVSV 238
V+ L + EL K +S+
Sbjct: 1863 DTVTNVLNFIKLQKIDIIELQKSLSL 1888
Score = 34.6 bits (79), Expect = 0.040
Identities = 64/348 (18%), Positives = 120/348 (34%), Gaps = 118/348 (33%)
Query: 22 GVLQPERLVVGYALTSKKKKSFLQPKLEILARNKGIS----------FVAIDQNRPLSDQ 71
GV+Q + Y +T+K P E+ + KG + +A +D
Sbjct: 242 GVIQ----LAHYVVTAKLLG--FTPG-ELRSYLKGATGHSQGLVTAVAIA------ETDS 288
Query: 72 GP--FDVVLHKLSGMEWCKIIEDYR--QKHPEVTILDPP----DAIKHLHNRQS-MLQDV 122
F V ++ + + R + +P ++ PP D++++ S ML +
Sbjct: 289 WESFFVSVRKAITVLFFI----GVRCYEAYPNTSL--PPSILEDSLENNEGVPSPMLS-I 341
Query: 123 ADLNLSD-------CNG------KVRV-----PRQMVIT--KDSLSIPDQVFEAGLKLPL 162
++L N +V + + +V++ SL GL L L
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL--------YGLNLTL 393
Query: 163 VAKPLVVDGSAKSHELF----LAYD-RFSL-------SE-LEP--PMLLQEFVNHGGILF 207
K G +S F L + RF L S L P ++ ++ V + + F
Sbjct: 394 -RKAKAPSGLDQSRIPFSERKLKFSNRF-LPVASPFHSHLLVPASDLINKDLVKN-NVSF 450
Query: 208 KIYIIGETIKV----------VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDA--- 254
+ I++ +R S ++S+R + + R P V + A
Sbjct: 451 N----AKDIQIPVYDTFDGSDLRVLS-GSISER-IVDC--IIRLP-VKWETTTQFKATHI 501
Query: 255 -DLDPGIAELPPRPLLERLARELRHRLGLRL-----FNIDMIREHGMR 296
D PG A L L + G+R+ +I+ ++G +
Sbjct: 502 LDFGPGGA-----SGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 31.4 bits (71), Expect = 0.38
Identities = 28/228 (12%), Positives = 63/228 (27%), Gaps = 56/228 (24%)
Query: 105 PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPD-QVFEAGLKLPLV 163
A ++ ++ M V+ + +T ++ D + + PL+
Sbjct: 130 GVQAAENARDKNKMRDAFNKAG-------VKSIKNKRVT----TLEDFRAALEEIGTPLI 178
Query: 164 AKPLVVDGSA------KSHELFLAYDRFS----------LSELEPPMLLQEFV------N 201
KP + S + ++R + E P + +EF+
Sbjct: 179 LKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDW 238
Query: 202 HGGILFKIYIIGETIKVVRRFSLPNVS-KRELAKVVSV-FRFPRVSSAAASADDADLDPG 259
+ + YI E I + + K P + LD
Sbjct: 239 YQTEGYSDYISIEGIMADGEYFPIAIHDKTPQIGFTETSHITP-----------SILDEE 287
Query: 260 IAELPPRPLLERLARELRHRLGLR--LFNIDMIREHGMRDVFYVIDIN 305
+ + A++ LGL+ + ++ +I+
Sbjct: 288 AKK-----KIVEAAKKANEGLGLQNCATHTEIKLMKN--REPGLIESA 328
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor,
spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis
compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB:
3kga_A* 3m42_A*
Length = 299
Score = 29.2 bits (66), Expect = 1.9
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 71 QGPFDVVL---HKLSGMEW-CKIIEDYRQKHPEVTIL 103
G VL +K + ++ K+++D + EV +
Sbjct: 28 LGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELH 64
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 29.2 bits (66), Expect = 2.1
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 16/68 (23%)
Query: 3 LNGEISHKEDEEDEEE--KQSGVLQ-----PERLVVGYALTSKKKKSFLQPKLEILARNK 55
LN S + + E ++ L+ PE++ K +LE +
Sbjct: 114 LNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIA---------KSKMFMSRLEKAYEAR 164
Query: 56 GISFVAID 63
+ +A+D
Sbjct: 165 RFTRIAVD 172
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM:
PF02562, ST genomics, PSI-2, protein structure
initiative; 2.35A {Corynebacterium glutamicum atcc
13032}
Length = 208
Score = 28.7 bits (65), Expect = 2.1
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 38 KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDY 93
+KS L+ IL + F + + DVV H+L G I++ Y
Sbjct: 165 GGQKSGLRLVRHILRGVDDVHFSELTSS---------DVVRHQLVG----HIVDAY 207
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 28.5 bits (64), Expect = 2.7
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 71 QGPFDVVL---HKLSGMEW-CKIIEDYRQKHPEVTIL 103
G VL +K + ++ K+++D + EV +
Sbjct: 72 LGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELH 108
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 3.5
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 229 KRELAKVVSVFRF--PRVSSAAASADDADLD 257
K+ L K+ + + SA A A A ++
Sbjct: 19 KQALKKLQASLKLYAD--DSAPALAIKATME 47
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane
protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Length = 133
Score = 26.7 bits (60), Expect = 5.2
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 136 VPRQMVITKDSLSI 149
+P Q V+TKDS++I
Sbjct: 23 IPPQEVLTKDSVTI 36
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 27.2 bits (60), Expect = 5.3
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 272 LARELRHRLGLRLFNIDMIREHGMR 296
L++ L L L L + D +E
Sbjct: 21 LSQALATGLRLPLLSKDAFKEVMFD 45
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
membrane fusion, trafficking, transmembrane, membrane
protein; 3.20A {Pyrococcus horikoshii}
Length = 188
Score = 26.8 bits (60), Expect = 7.9
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 136 VPRQMVITKDSLSI 149
VP Q ITKD++ +
Sbjct: 18 VPVQETITKDNVPV 31
>3lr0_A Sensor protein; niaid, seattle structural genomics center for
infectious DIS ssgcid, PH, RISS, iodide phased,
burkholder melioidosis; 1.90A {Burkholderia
pseudomallei} PDB: 3lr3_A 3lr5_A
Length = 143
Score = 26.4 bits (58), Expect = 8.0
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 254 ADLDPGIAELPPRPLLERLARELRHRLG 281
+ P + + ++R RLG
Sbjct: 76 REKTDKFKLQPDESVNRLIEHDIRSRLG 103
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo
sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X*
3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A*
3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Length = 336
Score = 26.9 bits (60), Expect = 8.7
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 71 QGPFDVVL---HKLSGMEW-CKIIEDYRQKHPEVTIL 103
G VL H+ +G + K++ D + EV
Sbjct: 39 LGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHH 75
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 27.2 bits (61), Expect = 8.7
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 12/75 (16%)
Query: 47 KLEILARNKGISFVAIDQN--------RPLSDQGPFDVVLHKLSGMEW----CKIIEDYR 94
K+ + R+ G + + +N RP P + +G+ W +
Sbjct: 131 KMAKVLRSAGHHLIPVKENLVDKIWTDRPERPCKPLLTLGLDYTGISWKDKVADLRLKMA 190
Query: 95 QKHPEVTILDPPDAI 109
+++ ++ D I
Sbjct: 191 ERNVMWFVVTALDEI 205
>3te8_A Sensor histidine kinase RISS; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.70A {Burkholderia pseudomallei} PDB: 3lr4_A
Length = 127
Score = 26.0 bits (57), Expect = 8.9
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 254 ADLDPGIAELPPRPLLERLARELRHRLG 281
+ P + + ++R RLG
Sbjct: 60 REKTDKFKLQPDESVNRLIEHDIRSRLG 87
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus
horikoshii}
Length = 113
Score = 25.6 bits (57), Expect = 9.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 136 VPRQMVITKDSLSI 149
VP Q VI KD++ +
Sbjct: 14 VPPQEVICKDNVVV 27
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.403
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,038,639
Number of extensions: 319932
Number of successful extensions: 949
Number of sequences better than 10.0: 1
Number of HSP's gapped: 938
Number of HSP's successfully gapped: 40
Length of query: 311
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 218
Effective length of database: 4,105,140
Effective search space: 894920520
Effective search space used: 894920520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)