BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021496
         (311 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9K6Q8|LYAT_BACHD Transcriptional regulator LytR OS=Bacillus halodurans (strain ATCC
           BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
           GN=lytR PE=3 SV=1
          Length = 304

 Score = 34.3 bits (77), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 103 RSSFAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRGQLRSDRRGISRPLKYEDP 162
           ++  AIGL L T  + I+     +  S  N  G + + + RG  +SD+R ++  +  +DP
Sbjct: 3   KALIAIGLILGTITVAIIGYGIYLYSSIQNTAGEMHEPLDRGD-KSDKRDVAFDISAQDP 61

Query: 163 FNNPLVKVGKSNSTMEMCGKVYRLAPITLTKEQQTI 198
           F+  +  V     T    G+   L  +T+  ++++I
Sbjct: 62  FSILIAGVDSREDT--HAGRSDTLIVLTVNPKEESI 95


>sp|Q96QZ7|MAGI1_HUMAN Membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 1 OS=Homo sapiens GN=MAGI1 PE=1 SV=3
          Length = 1491

 Score = 33.5 bits (75), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 174  NSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQ-----WKRPTIFLKEGDLIPPDVDP 228
            +   E CGK+ R+    L    +T    + SRA +      +R  +FLK GD   P+ DP
Sbjct: 1184 DGPAERCGKM-RIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGDGSVPEYDP 1242

Query: 229  DTVRWIPANHP 239
             + R  PA  P
Sbjct: 1243 SSDRHGPATGP 1253


>sp|Q4FP17|LEU3_PELUB 3-isopropylmalate dehydrogenase OS=Pelagibacter ubique (strain
           HTCC1062) GN=leuB PE=3 SV=1
          Length = 368

 Score = 33.1 bits (74), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 210 KRPTIFLKEGDLIPPDVDPDT---VRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRI 266
           K+  I L  GD I P+V  +    + W+ +N        +IDEDLA    Y K G P   
Sbjct: 5   KKRKILLLPGDGIGPEVIQEVKKVILWLNSNKSLDF---EIDEDLAGGCSYDKHGTPITD 61

Query: 267 RAEHEALQKKLEAL 280
              ++AL+ +   L
Sbjct: 62  EVFYKALESEFVML 75


>sp|A8LIT9|NUOD_DINSH NADH-quinone oxidoreductase subunit D OS=Dinoroseobacter shibae
           (strain DFL 12) GN=nuoD PE=3 SV=1
          Length = 404

 Score = 33.1 bits (74), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 222 IPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQ 274
           +PPD+  D   W   +H F +  +DID  L +N +++++     +  E E L+
Sbjct: 176 LPPDLLDDIEAW---SHEFPSVMDDIDGLLTENRIFKQRNCDIGVVTEEEILE 225


>sp|Q6MI59|SYD_BDEBA Aspartate--tRNA ligase OS=Bdellovibrio bacteriovorus (strain ATCC
           15356 / DSM 50701 / NCIB 9529 / HD100) GN=aspS PE=3 SV=1
          Length = 642

 Score = 32.7 bits (73), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 228 PDTVRWIPANHPFATTANDIDEDLAQNN 255
           PD  RW+  +HPF +  ++  +DL  NN
Sbjct: 480 PDEKRWVARHHPFTSPKDEFAQDLVNNN 507


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.134    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,888,352
Number of Sequences: 539616
Number of extensions: 4194276
Number of successful extensions: 9885
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9882
Number of HSP's gapped (non-prelim): 8
length of query: 311
length of database: 191,569,459
effective HSP length: 117
effective length of query: 194
effective length of database: 128,434,387
effective search space: 24916271078
effective search space used: 24916271078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)