Query 021496
Match_columns 311
No_of_seqs 14 out of 16
Neff 1.7
Searched_HMMs 46136
Date Fri Mar 29 03:25:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14575 EphA2_TM: Ephrin type 79.3 2.1 4.5E-05 32.8 2.9 8 155-162 55-62 (75)
2 PF05977 MFS_3: Transmembrane 53.8 55 0.0012 32.2 7.5 80 179-285 426-510 (524)
3 PF05597 Phasin: Poly(hydroxya 40.9 19 0.00041 30.5 1.9 27 254-282 97-123 (132)
4 PF12669 P12: Virus attachment 38.7 25 0.00053 26.0 2.0 25 105-129 1-25 (58)
5 PRK14126 cell division protein 38.0 26 0.00057 27.3 2.2 19 170-188 4-22 (85)
6 COG2929 Uncharacterized protei 37.3 13 0.00027 30.8 0.3 18 246-264 5-22 (93)
7 PF01299 Lamp: Lysosome-associ 36.8 35 0.00075 31.1 3.0 26 107-133 276-301 (306)
8 PF06874 FBPase_2: Firmicute f 35.8 27 0.00059 36.8 2.5 34 167-200 330-374 (640)
9 KOG3400 RNA polymerase subunit 34.8 20 0.00043 31.8 1.1 12 176-187 88-99 (143)
10 PF14698 ASL_C2: Argininosucci 34.7 13 0.00028 27.9 -0.0 20 242-267 2-21 (70)
11 PF13600 DUF4140: N-terminal d 34.7 68 0.0015 24.5 3.9 15 221-235 30-44 (104)
12 PF00280 potato_inhibit: Potat 33.4 15 0.00033 27.7 0.2 20 213-232 28-47 (63)
13 COG4391 Uncharacterized protei 33.1 35 0.00075 26.7 2.1 29 160-188 31-62 (62)
14 PF06390 NESP55: Neuroendocrin 32.5 11 0.00024 35.7 -0.8 22 201-224 2-23 (257)
15 PF04977 DivIC: Septum formati 30.9 42 0.00091 23.8 2.1 41 266-306 36-77 (80)
16 PF11935 DUF3453: Domain of un 30.3 21 0.00046 31.7 0.6 15 230-244 92-106 (239)
17 PF07225 NDUF_B4: NADH-ubiquin 29.5 62 0.0013 27.6 3.2 43 100-150 77-119 (125)
18 KOG3591 Alpha crystallins [Pos 29.3 26 0.00055 30.7 0.9 12 221-232 122-133 (173)
19 TIGR03141 cytochro_ccmD heme e 29.2 27 0.00059 24.4 0.9 39 106-144 6-44 (45)
20 COG2975 Uncharacterized protei 28.3 28 0.0006 27.4 0.8 9 224-232 18-26 (64)
21 cd08153 srpA_like Catalase-lik 28.2 84 0.0018 28.6 4.0 72 165-244 158-243 (295)
22 PF06781 UPF0233: Uncharacteri 27.5 45 0.00098 26.9 2.0 21 102-122 65-85 (87)
23 PRK02251 putative septation in 25.6 54 0.0012 26.7 2.1 21 102-122 65-85 (87)
24 PRK00159 putative septation in 24.4 57 0.0012 26.6 2.0 25 98-122 61-85 (87)
25 PF11831 Myb_Cef: pre-mRNA spl 24.1 40 0.00087 30.4 1.2 30 194-232 117-146 (231)
26 TIGR00501 met_pdase_II methion 23.8 92 0.002 28.4 3.5 59 238-296 188-263 (295)
27 PRK10249 phenylalanine transpo 23.3 1E+02 0.0022 29.0 3.8 69 76-144 18-94 (458)
28 PF08492 SRP72: SRP72 RNA-bind 23.2 43 0.00093 25.4 1.0 13 224-236 39-51 (59)
29 PF07407 Seadorna_VP6: Seadorn 23.1 72 0.0016 32.2 2.8 42 236-285 22-63 (420)
30 KOG3647 Predicted coiled-coil 22.4 55 0.0012 32.2 1.9 19 265-283 144-162 (338)
31 PF15050 SCIMP: SCIMP protein 21.8 1E+02 0.0022 27.2 3.2 42 104-158 6-48 (133)
32 PRK11611 enhanced serine sensi 21.8 91 0.002 29.0 3.0 58 208-269 86-143 (246)
33 PF13874 Nup54: Nucleoporin co 21.8 27 0.00058 28.9 -0.3 30 252-283 93-122 (141)
34 PF03242 LEA_3: Late embryogen 21.5 48 0.001 26.9 1.1 13 227-239 67-79 (93)
35 PF11511 RhodobacterPufX: Intr 20.6 79 0.0017 25.0 2.1 38 79-124 11-48 (67)
36 PF10484 MRP-S23: Mitochondria 20.6 93 0.002 26.9 2.7 42 129-170 3-54 (127)
37 PF13549 ATP-grasp_5: ATP-gras 20.5 36 0.00079 30.4 0.2 44 159-202 118-162 (222)
38 PF13908 Shisa: Wnt and FGF in 20.3 62 0.0013 27.2 1.5 26 100-125 74-99 (179)
No 1
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=79.29 E-value=2.1 Score=32.76 Aligned_cols=8 Identities=63% Similarity=1.215 Sum_probs=4.0
Q ss_pred CCcccCCC
Q 021496 155 RPLKYEDP 162 (311)
Q Consensus 155 kplkYeDP 162 (311)
-|-+||||
T Consensus 55 DP~TYEDP 62 (75)
T PF14575_consen 55 DPHTYEDP 62 (75)
T ss_dssp -GGGSSSH
T ss_pred CcccccCH
Confidence 45555555
No 2
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=53.83 E-value=55 Score=32.22 Aligned_cols=80 Identities=31% Similarity=0.529 Sum_probs=50.4
Q ss_pred eeceeeeeecceecHHHHHHHHhhhcc----cccccCceEeeccCCCCCCCC-CCCceeeecCCCCcccccccccHHHhh
Q 021496 179 MCGKVYRLAPITLTKEQQTIHQKRRSR----AYQWKRPTIFLKEGDLIPPDV-DPDTVRWIPANHPFATTANDIDEDLAQ 253 (311)
Q Consensus 179 M~GKvyRLaPvtLT~Eqq~~HQkRRsr----AYqWKRPtvFLkEGdsvPpdV-DPdtVRWIPaNHPFAttas~iDEdlAq 253 (311)
|---+||++|=.-.+=..+||+.||+| ||+|. +| .|+ ||+ ||+-.=| +. .-.|-+-|
T Consensus 426 ~v~~~y~i~~~~~~~f~~~~~~~~~~r~r~ga~~w~---~~--------~d~~~~~--~~~e~~~-~~----~w~~~~r~ 487 (524)
T PF05977_consen 426 MVTIEYRIAPEDAAAFLAAMRELRRIRRRDGARRWG---LF--------RDLEDPG--RWVERFH-VE----SWLEHLRQ 487 (524)
T ss_pred EEEEEEEECcccHHHHHHHHHHHHHHHhhcChhhce---ee--------eccCCCC--eEEEEEe-CC----CHHHHHHH
Confidence 455689999988777777787766655 99994 33 232 233 7775422 01 11222322
Q ss_pred cccccccCCccchhhhHHHHHHHHHHhhhhhh
Q 021496 254 NNVYQKQGVPFRIRAEHEALQKKLEALQNFNN 285 (311)
Q Consensus 254 ~NVyQk~GVP~RikAEHEALq~klEa~qn~~k 285 (311)
+ -|+.+.-.++|+++.++.....
T Consensus 488 ~---------~r~t~~d~~~~~~~~~~~~~~~ 510 (524)
T PF05977_consen 488 H---------ERVTQADRELQERLRAFHRGDE 510 (524)
T ss_pred h---------ccCCHhhHHHHHHHHHhcCCCC
Confidence 2 3888888888888888876543
No 3
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=40.88 E-value=19 Score=30.53 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=23.2
Q ss_pred cccccccCCccchhhhHHHHHHHHHHhhh
Q 021496 254 NNVYQKQGVPFRIRAEHEALQKKLEALQN 282 (311)
Q Consensus 254 ~NVyQk~GVP~RikAEHEALq~klEa~qn 282 (311)
++...+-|||+ +.|.+||..|+++|..
T Consensus 97 ~~aL~rLgvPs--~~dv~~L~~rId~L~~ 123 (132)
T PF05597_consen 97 ARALNRLGVPS--RKDVEALSARIDQLTA 123 (132)
T ss_pred HHHHHhcCCCC--HHHHHHHHHHHHHHHH
Confidence 46788999999 6899999999998865
No 4
>PF12669 P12: Virus attachment protein p12 family
Probab=38.70 E-value=25 Score=26.04 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=15.6
Q ss_pred chhHHHHHHHHHHHHHHHhhheecc
Q 021496 105 SFAIGLSLSTAFLVIVVRAFIVRRS 129 (311)
Q Consensus 105 nf~~g~cv~~a~l~~~~R~~v~r~~ 129 (311)
|+++++.|+++++.+++|.++.+++
T Consensus 1 tiII~~Ii~~~~~~v~~r~~~k~~K 25 (58)
T PF12669_consen 1 TIIIGIIILAAVAYVAIRKFIKDKK 25 (58)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677776666666556677664433
No 5
>PRK14126 cell division protein ZapA; Provisional
Probab=37.95 E-value=26 Score=27.31 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=15.4
Q ss_pred ecCCCcceeeeceeeeeec
Q 021496 170 VGKSNSTMEMCGKVYRLAP 188 (311)
Q Consensus 170 v~k~~StveM~GKvyRLaP 188 (311)
-.|..-.|+++|+.|++++
T Consensus 4 ~~k~~v~V~I~G~~Y~i~~ 22 (85)
T PRK14126 4 GKKTRINVEIYGQQYTIVG 22 (85)
T ss_pred CCCceEEEEECCEEEEecC
Confidence 3455568999999999996
No 6
>COG2929 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.29 E-value=13 Score=30.76 Aligned_cols=18 Identities=44% Similarity=0.800 Sum_probs=15.6
Q ss_pred cccHHHhhcccccccCCcc
Q 021496 246 DIDEDLAQNNVYQKQGVPF 264 (311)
Q Consensus 246 ~iDEdlAq~NVyQk~GVP~ 264 (311)
+-||+-|+.|. |||||+|
T Consensus 5 ewDe~Ka~sNl-~KHGv~F 22 (93)
T COG2929 5 EWDENKARSNL-EKHGVSF 22 (93)
T ss_pred EeCchHhhhhH-HHcCCCH
Confidence 45888999995 9999999
No 7
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=36.78 E-value=35 Score=31.08 Aligned_cols=26 Identities=27% Similarity=0.634 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHhhheecccCCC
Q 021496 107 AIGLSLSTAFLVIVVRAFIVRRSRYNR 133 (311)
Q Consensus 107 ~~g~cv~~a~l~~~~R~~v~r~~~~~~ 133 (311)
++|++++..+|++++ +|++.+||...
T Consensus 276 aVG~~La~lvlivLi-aYli~Rrr~~~ 301 (306)
T PF01299_consen 276 AVGAALAGLVLIVLI-AYLIGRRRSRA 301 (306)
T ss_pred HHHHHHHHHHHHHHH-hheeEeccccc
Confidence 344444444444433 56555555443
No 8
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=35.84 E-value=27 Score=36.77 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=29.3
Q ss_pred ceeecCCCcceeeeceeeee-----------ecceecHHHHHHHH
Q 021496 167 LVKVGKSNSTMEMCGKVYRL-----------APITLTKEQQTIHQ 200 (311)
Q Consensus 167 lVKv~k~~StveM~GKvyRL-----------aPvtLT~Eqq~~HQ 200 (311)
|=|||-.++||++-||+|-| .|-.||+|++++=+
T Consensus 330 L~kId~~~gti~i~gk~y~L~d~~FPTiDp~~Py~LT~eE~~vi~ 374 (640)
T PF06874_consen 330 LDKIDYEKGTITIDGKEYPLNDTNFPTIDPEDPYELTEEEEEVID 374 (640)
T ss_pred HhhcCccCCEEEECCEEEeecCCCCCCCCCCCcccCCHHHHHHHH
Confidence 44999999999999999998 48899999887543
No 9
>KOG3400 consensus RNA polymerase subunit 8 [Transcription]
Probab=34.81 E-value=20 Score=31.76 Aligned_cols=12 Identities=50% Similarity=0.836 Sum_probs=9.8
Q ss_pred ceeeeceeeeee
Q 021496 176 TMEMCGKVYRLA 187 (311)
Q Consensus 176 tveM~GKvyRLa 187 (311)
---||||+||+-
T Consensus 88 eYvMyGkvYriE 99 (143)
T KOG3400|consen 88 EYVMYGKVYRIE 99 (143)
T ss_pred eEEEeeEEEEEe
Confidence 356999999985
No 10
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=34.68 E-value=13 Score=27.87 Aligned_cols=20 Identities=45% Similarity=0.808 Sum_probs=12.0
Q ss_pred cccccccHHHhhcccccccCCccchh
Q 021496 242 TTANDIDEDLAQNNVYQKQGVPFRIR 267 (311)
Q Consensus 242 ttas~iDEdlAq~NVyQk~GVP~Rik 267 (311)
+|++|+-+-|.+ + |+|||--
T Consensus 2 ~~ATdlAD~LVr-----~-GipFR~A 21 (70)
T PF14698_consen 2 STATDLADYLVR-----K-GIPFREA 21 (70)
T ss_dssp GGHHHHHHHHHH-----T-TS-HHHH
T ss_pred ccHHHHHHHHHH-----c-CCCHHHH
Confidence 356666666543 4 9999954
No 11
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=34.68 E-value=68 Score=24.47 Aligned_cols=15 Identities=40% Similarity=0.775 Sum_probs=12.4
Q ss_pred CCCCCCCCCceeeec
Q 021496 221 LIPPDVDPDTVRWIP 235 (311)
Q Consensus 221 svPpdVDPdtVRWIP 235 (311)
.+|+.+||+++|==.
T Consensus 30 ~Lp~~~d~~Sl~V~~ 44 (104)
T PF13600_consen 30 GLPPSLDPDSLRVSG 44 (104)
T ss_pred CCCcccCCCcEEEEe
Confidence 589999999998543
No 12
>PF00280 potato_inhibit: Potato inhibitor I family; InterPro: IPR000864 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteinase inhibitors belong to MEROPS inhibitor family I13, clan IG. They inhibit peptidases of the S1 (IPR001254 from INTERPRO) and S8 (IPR000209 from INTERPRO) families []. Potato inhibitor type I sequences are not solely restricted to potatoes but are found in other plant species for example: barley endosperm chymotrypsin inhibitor [], and pumpkin trypsin inhibitor. Exceptions are found in leech's, e.g.Hirudo medicinalis (Medicinal leech), but not other metazoa []. In general, the proteins have retained a specificity towards chymotrypsin-like and elastase-like proteases []. Structurally these inhibitors are small (60 to 90 residues) and in contrast with other families of protease inhibitors, they lack disulphide bonds. The inhibitor is a wedge-shaped molecule, its pointed edge formed by the protease-binding loop, which contains the scissile bond. The loop binds tightly to the protease active site, subsequent cleavage of the scissile bond causing inhibition of the enzyme []. The inhibitors (designated type I and II) are synthesised in potato tubers, increasing in concentration as the tuber develops. Synthesis of the inhibitors throughout the plant is also induced by leaf damage; this systemic response being triggered by the release of a putative plant hormone []. Examples found in the bacteria and archaea are probable false positives.; GO: 0004867 serine-type endopeptidase inhibitor activity, 0009611 response to wounding; PDB: 1TEC_I 1SBN_I 1ACB_I 1EGP_A 3TEC_I 2SEC_I 1EGL_A 2TEC_I 1SIB_I 1MEE_I ....
Probab=33.41 E-value=15 Score=27.75 Aligned_cols=20 Identities=35% Similarity=0.497 Sum_probs=18.7
Q ss_pred eEeeccCCCCCCCCCCCcee
Q 021496 213 TIFLKEGDLIPPDVDPDTVR 232 (311)
Q Consensus 213 tvFLkEGdsvPpdVDPdtVR 232 (311)
.++|.+|.++|.|.++|-||
T Consensus 28 v~vlp~gs~vt~df~~~RVr 47 (63)
T PF00280_consen 28 VVVLPEGSPVTMDFRCDRVR 47 (63)
T ss_dssp EEEEETTSEEESSBETTEEE
T ss_pred EEEEeCCCCcCCCcCCCEEE
Confidence 46999999999999999998
No 13
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.09 E-value=35 Score=26.67 Aligned_cols=29 Identities=34% Similarity=0.710 Sum_probs=19.9
Q ss_pred CCCCCCcce--eecCCCcc-eeeeceeeeeec
Q 021496 160 EDPFNNPLV--KVGKSNST-MEMCGKVYRLAP 188 (311)
Q Consensus 160 eDPFNNPlV--Kv~k~~St-veM~GKvyRLaP 188 (311)
+-||..|=| -+++++.. ---||++|||+|
T Consensus 31 ~~p~~HPrV~L~mg~~gev~CPYC~t~y~l~~ 62 (62)
T COG4391 31 EPPNDHPRVFLDMGDEGEVVCPYCSTRYRLNP 62 (62)
T ss_pred CCCCCCCEEEEEcCCCCcEecCccccEEEecC
Confidence 446888877 44444443 357999999986
No 14
>PF06390 NESP55: Neuroendocrine-specific golgi protein P55 (NESP55); InterPro: IPR009434 This family consists of several mammalian neuroendocrine-specific golgi protein P55 (NESP55) sequences. NESP55 is a novel member of the chromogranin family and is a soluble, acidic, heat-stable secretory protein that is expressed exclusively in endocrine and nervous tissues, although less widely than chromogranins [].
Probab=32.53 E-value=11 Score=35.71 Aligned_cols=22 Identities=55% Similarity=0.865 Sum_probs=15.2
Q ss_pred hhhcccccccCceEeeccCCCCCC
Q 021496 201 KRRSRAYQWKRPTIFLKEGDLIPP 224 (311)
Q Consensus 201 kRRsrAYqWKRPtvFLkEGdsvPp 224 (311)
-|||||+||+|-.-- =.|.-||
T Consensus 2 drrsra~~~rrarh~--y~dlcpp 23 (257)
T PF06390_consen 2 DRRSRAQQWRRARHN--YNDLCPP 23 (257)
T ss_pred cchhHHHHHHHhhhc--ccccCCc
Confidence 489999999986532 2455554
No 15
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.89 E-value=42 Score=23.78 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=30.5
Q ss_pred hhhhHHHHHHHHHHh-hhhhhhhhhhhcceeEEeeeeeeeee
Q 021496 266 IRAEHEALQKKLEAL-QNFNNCRHFCRHGCFYLLTIERVFFV 306 (311)
Q Consensus 266 ikAEHEALq~klEa~-qn~~kl~~~~~~~~~~~~~~~~~~~~ 306 (311)
+++|.+.|+++++.+ ++...+.++.|.---|.-.=|.+|-+
T Consensus 36 l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~~E~v~~~ 77 (80)
T PF04977_consen 36 LKKENEELKEEIERLKNDPDYIEKVAREKLGMVKPGEIVFKI 77 (80)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCCCCEEEeC
Confidence 567888888888888 88888888888655555566666654
No 16
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=30.33 E-value=21 Score=31.66 Aligned_cols=15 Identities=27% Similarity=0.653 Sum_probs=9.0
Q ss_pred ceeeecCCCCccccc
Q 021496 230 TVRWIPANHPFATTA 244 (311)
Q Consensus 230 tVRWIPaNHPFAtta 244 (311)
.+-|||.||||-...
T Consensus 92 SL~~vp~~Hp~l~~~ 106 (239)
T PF11935_consen 92 SLSSVPPNHPLLNPQ 106 (239)
T ss_dssp -GGGS-TT-SSS-HH
T ss_pred CHHHcCCCCCcCCHH
Confidence 466999999998654
No 17
>PF07225 NDUF_B4: NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); InterPro: IPR009866 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains human NADH-ubiquinone oxidoreductase subunit NDUFB4 and related sequences.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=29.46 E-value=62 Score=27.59 Aligned_cols=43 Identities=28% Similarity=0.528 Sum_probs=27.4
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHhhheecccCCCCCchHHHHHhcccccCC
Q 021496 100 RHTRSSFAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRGQLRSDR 150 (311)
Q Consensus 100 r~~g~nf~~g~cv~~a~l~~~~R~~v~r~~~~~~~GSVaDLVRRGQLrSdr 150 (311)
|-.+-+..+|++++++- +++-.++.+..++. -.+++|.||| ||
T Consensus 77 RpTPktsllg~~~~v~P--~i~~~~~~KtdRD~----~E~~~r~G~~--dR 119 (125)
T PF07225_consen 77 RPTPKTSLLGLGFGVVP--LIFYYYVLKTDRDR----KEKLIRTGKL--DR 119 (125)
T ss_pred ccCchHHHHHHHHHHHH--HHHHHhhhccchhH----HHHHHhcCcc--ce
Confidence 44667778887654443 34444555554443 4799999999 66
No 18
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=29.32 E-value=26 Score=30.66 Aligned_cols=12 Identities=58% Similarity=1.082 Sum_probs=10.7
Q ss_pred CCCCCCCCCcee
Q 021496 221 LIPPDVDPDTVR 232 (311)
Q Consensus 221 svPpdVDPdtVR 232 (311)
.||+||||++|+
T Consensus 122 ~LP~~vdp~~V~ 133 (173)
T KOG3591|consen 122 LLPEDVDPTSVT 133 (173)
T ss_pred cCCCCCChhheE
Confidence 499999999986
No 19
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=29.22 E-value=27 Score=24.37 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHhhheecccCCCCCchHHHHHhc
Q 021496 106 FAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRG 144 (311)
Q Consensus 106 f~~g~cv~~a~l~~~~R~~v~r~~~~~~~GSVaDLVRRG 144 (311)
+-+|.+.++++++++.-.+....+++...-.++.+-+|+
T Consensus 6 ~yVW~sYg~t~l~l~~li~~~~~~~r~~~~~l~~~~~r~ 44 (45)
T TIGR03141 6 FYVWLAYGITALVLAGLILWSLLDRRRLLRELRRLEARE 44 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 556777777777776555544444433333444444443
No 20
>COG2975 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.33 E-value=28 Score=27.44 Aligned_cols=9 Identities=89% Similarity=1.446 Sum_probs=8.5
Q ss_pred CCCCCCcee
Q 021496 224 PDVDPDTVR 232 (311)
Q Consensus 224 pdVDPdtVR 232 (311)
|||||-|||
T Consensus 18 pdvDPktvr 26 (64)
T COG2975 18 PDVDPKTVR 26 (64)
T ss_pred CCCCcceee
Confidence 899999997
No 21
>cd08153 srpA_like Catalase-like heme-binding proteins similar to the uncharacterized srpA. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity. This family contains uncharacterized proteins similar to the Synechococcus elongatus PCC 7942 periplasmic protein srpA, of mostly bacterial origin. The plasmid-encoded srpA is regulated by sulfate, but does not seem to function in its uptake or metabolism.
Probab=28.21 E-value=84 Score=28.57 Aligned_cols=72 Identities=19% Similarity=0.342 Sum_probs=45.0
Q ss_pred CcceeecCCCcceeeeceeeeeecc----eecHHH----------HHHHHhhhcccccccCceEeeccCCCCCCCCCCCc
Q 021496 165 NPLVKVGKSNSTMEMCGKVYRLAPI----TLTKEQ----------QTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDT 230 (311)
Q Consensus 165 NPlVKv~k~~StveM~GKvyRLaPv----tLT~Eq----------q~~HQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdt 230 (311)
|||.=+++.+.+ .+.| ||+.|. .|++|+ +++.|.=+...+.|+==.-.-.+||+ ++--|
T Consensus 158 ~~f~f~~~~G~~--~~vk-~~~~P~~g~~~l~~~~~~~~~~d~l~~~l~~~l~~g~~~f~l~vQl~~~~d~----i~D~t 230 (295)
T cd08153 158 NAFYFTNANGKR--QPVR-WRFVPEDGVKYLSDEEAAKLGPDFLFDELAQRLAQGPVRWDLVLQLAEPGDP----TDDPT 230 (295)
T ss_pred eeEEEECCCCCE--EEEE-EEEEECCCCCCCCHHHhccCCcchhHHHHHHHHHhCCceEEEEEEEcCCCCc----CCCCC
Confidence 565555543322 2233 888885 366655 34566655566788776777778883 45568
Q ss_pred eeeecCCCCccccc
Q 021496 231 VRWIPANHPFATTA 244 (311)
Q Consensus 231 VRWIPaNHPFAtta 244 (311)
+.| |..|||-+-+
T Consensus 231 ~~W-pe~~p~~~vg 243 (295)
T cd08153 231 KPW-PADRKEVDAG 243 (295)
T ss_pred ccC-CCCCceeEEE
Confidence 999 7779986543
No 22
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=27.48 E-value=45 Score=26.94 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=16.8
Q ss_pred CCcchhHHHHHHHHHHHHHHH
Q 021496 102 TRSSFAIGLSLSTAFLVIVVR 122 (311)
Q Consensus 102 ~g~nf~~g~cv~~a~l~~~~R 122 (311)
..-|++|||++.++-++++.|
T Consensus 65 G~WN~~IGfg~~~~Gf~mt~r 85 (87)
T PF06781_consen 65 GNWNLAIGFGLMIVGFLMTMR 85 (87)
T ss_pred cchHHHHHHHHHHHHHHHHcc
Confidence 356999999998888877654
No 23
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=25.58 E-value=54 Score=26.74 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=17.1
Q ss_pred CCcchhHHHHHHHHHHHHHHH
Q 021496 102 TRSSFAIGLSLSTAFLVIVVR 122 (311)
Q Consensus 102 ~g~nf~~g~cv~~a~l~~~~R 122 (311)
.+-|++|||++.++-++++.|
T Consensus 65 G~WN~~IGfg~~~~G~~mt~r 85 (87)
T PRK02251 65 GAWNLVIGFGLIMAGFGMTTQ 85 (87)
T ss_pred cchhHHHHHHHHHHHHHHHcc
Confidence 456999999998888887755
No 24
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=24.38 E-value=57 Score=26.64 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=18.8
Q ss_pred hhccCCcchhHHHHHHHHHHHHHHH
Q 021496 98 MKRHTRSSFAIGLSLSTAFLVIVVR 122 (311)
Q Consensus 98 ~~r~~g~nf~~g~cv~~a~l~~~~R 122 (311)
|..-.+-|++|||++.++-++++.|
T Consensus 61 m~~lG~WN~~IGFg~~i~G~lmt~r 85 (87)
T PRK00159 61 MADLGPWNYAIGFALMITGLLMTMR 85 (87)
T ss_pred CcccCchhHHHHHHHHHHHHHHhcc
Confidence 3334456999999999888887765
No 25
>PF11831 Myb_Cef: pre-mRNA splicing factor component; InterPro: IPR021786 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 73 to 279 amino acids in length.
Probab=24.10 E-value=40 Score=30.37 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=21.7
Q ss_pred HHHHHHHhhhcccccccCceEeeccCCCCCCCCCCCcee
Q 021496 194 EQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVR 232 (311)
Q Consensus 194 Eqq~~HQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdtVR 232 (311)
++++..-+|||+++||.=| -|..||....|
T Consensus 117 ~~e~~e~~rRSqvvQR~LP---------RP~~v~~~~L~ 146 (231)
T PF11831_consen 117 EEEEKELKRRSQVVQRGLP---------RPSEVNESILR 146 (231)
T ss_pred HHHHHHHHHhhHHHHccCC---------CCCcccHHHHH
Confidence 4455667899999999755 46677766666
No 26
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=23.76 E-value=92 Score=28.38 Aligned_cols=59 Identities=24% Similarity=0.398 Sum_probs=34.5
Q ss_pred CCcccccccccHHHhhcccccccC-CccchhhhHHHHHHH----------HHHhhhhhh------hhhhhhcceeE
Q 021496 238 HPFATTANDIDEDLAQNNVYQKQG-VPFRIRAEHEALQKK----------LEALQNFNN------CRHFCRHGCFY 296 (311)
Q Consensus 238 HPFAttas~iDEdlAq~NVyQk~G-VP~RikAEHEALq~k----------lEa~qn~~k------l~~~~~~~~~~ 296 (311)
.||+|+..-.=.|....++|+..+ .|.|.++..+-|+.= +..|.++.. |+.+++||..+
T Consensus 188 EP~~~~G~G~v~~~~~~~iy~~~~~~~~k~~~~r~~l~~i~~~~~~~pF~~r~l~~~~~~~~~~~l~~~~~~~~~~ 263 (295)
T TIGR00501 188 EPFATDGVGYVTDGGEVSIYAFLAERPVRLDSARNLLKTIDENYGTLPFARRWLDKLGDEKYLFALNNLIRHGLIY 263 (295)
T ss_pred ceeEECCcCeEecCCCeEEEeECCCCCCCCHHHHHHHHHHHHHCCCCCcchhHhcccchhHHHHHHHHHHHCCCcc
Confidence 488887654333334678998543 477777665544421 112222222 88899999865
No 27
>PRK10249 phenylalanine transporter; Provisional
Probab=23.27 E-value=1e+02 Score=28.96 Aligned_cols=69 Identities=10% Similarity=0.027 Sum_probs=46.1
Q ss_pred CCCCchhhHHHhhhcc--------CchhhhhhccCCcchhHHHHHHHHHHHHHHHhhheecccCCCCCchHHHHHhc
Q 021496 76 KTKDPVAKFQETLISL--------PPVAFVMKRHTRSSFAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRG 144 (311)
Q Consensus 76 ~~~~si~~~~~~v~s~--------Pp~vf~~~r~~g~nf~~g~cv~~a~l~~~~R~~v~r~~~~~~~GSVaDLVRRG 144 (311)
+++.+++..+-+...+ .-....+-+..|+..+++++++..+.......+.--.+.....|+..+.++++
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~ 94 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKY 94 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 4667777776544222 11122344566777777777777777777777776677778889999999875
No 28
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=23.17 E-value=43 Score=25.42 Aligned_cols=13 Identities=46% Similarity=1.163 Sum_probs=9.9
Q ss_pred CCCCCCceeeecC
Q 021496 224 PDVDPDTVRWIPA 236 (311)
Q Consensus 224 pdVDPdtVRWIPa 236 (311)
|++-||-=||||-
T Consensus 39 p~~~PDPERWLP~ 51 (59)
T PF08492_consen 39 PGKTPDPERWLPK 51 (59)
T ss_pred CCCCCCccccCch
Confidence 4566888899994
No 29
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=23.06 E-value=72 Score=32.17 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=30.5
Q ss_pred CCCCcccccccccHHHhhcccccccCCccchhhhHHHHHHHHHHhhhhhh
Q 021496 236 ANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQKKLEALQNFNN 285 (311)
Q Consensus 236 aNHPFAttas~iDEdlAq~NVyQk~GVP~RikAEHEALq~klEa~qn~~k 285 (311)
.||.....+-|=.-+|-|.| .|+|+|.++|+.|+|+|.++-+
T Consensus 22 ~~~~~~~~~~~e~~aLr~EN--------~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 22 ENHELEGVSIDENFALRMEN--------HSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred ccccccccchhhhhhHHHHh--------HHHHHHHHHHHHHHHHHHHHhh
Confidence 47777665543334555666 5899999999999999966544
No 30
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.40 E-value=55 Score=32.19 Aligned_cols=19 Identities=53% Similarity=0.646 Sum_probs=16.9
Q ss_pred chhhhHHHHHHHHHHhhhh
Q 021496 265 RIRAEHEALQKKLEALQNF 283 (311)
Q Consensus 265 RikAEHEALq~klEa~qn~ 283 (311)
|=|+|.|.+|++||+||..
T Consensus 144 rrk~ElEr~rkRle~Lqsi 162 (338)
T KOG3647|consen 144 RRKAELERTRKRLEALQSI 162 (338)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5589999999999999974
No 31
>PF15050 SCIMP: SCIMP protein
Probab=21.82 E-value=1e+02 Score=27.17 Aligned_cols=42 Identities=33% Similarity=0.473 Sum_probs=24.3
Q ss_pred cchhHHHHHHHHHHHHHHHhhheecccCCCCCchHHHHHhcccccCC-cCCCCCcc
Q 021496 104 SSFAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRGQLRSDR-RGISRPLK 158 (311)
Q Consensus 104 ~nf~~g~cv~~a~l~~~~R~~v~r~~~~~~~GSVaDLVRRGQLrSdr-RGiskplk 158 (311)
-||+|-++||+.++-++ ..+++. -|=|-|||-|+ --|++|+|
T Consensus 6 ~nFWiiLAVaII~vS~~-lglIly------------CvcR~~lRqGkkweiakp~k 48 (133)
T PF15050_consen 6 DNFWIILAVAIILVSVV-LGLILY------------CVCRWQLRQGKKWEIAKPLK 48 (133)
T ss_pred hchHHHHHHHHHHHHHH-HHHHHH------------HHHHHHHHccccceeccchh
Confidence 48999988886554433 333321 23445555544 46777775
No 32
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=21.81 E-value=91 Score=29.03 Aligned_cols=58 Identities=9% Similarity=0.005 Sum_probs=46.3
Q ss_pred cccCceEeeccCCCCCCCCCCCceeeecCCCCcccccccccHHHhhcccccccCCccchhhh
Q 021496 208 QWKRPTIFLKEGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAE 269 (311)
Q Consensus 208 qWKRPtvFLkEGdsvPpdVDPdtVRWIPaNHPFAttas~iDEdlAq~NVyQk~GVP~RikAE 269 (311)
.|+--++||+.|-+.--..+|++|+++-+++.++-.. +.+.+++---+-|.|-.--+.
T Consensus 86 ~~~~a~l~LNp~s~~gk~f~p~EI~~LL~~~~~~~~~----~~~i~~g~~v~lg~p~~~P~~ 143 (246)
T PRK11611 86 MTLGETLFLNPKLPTGKEFMPREISLLLGEEGNPLSS----QEVLEGGESLLLSEVAEPPAQ 143 (246)
T ss_pred hccCCCEEEcCCCCCCcccCHHHHHHHHhccCCCcce----eEEeCCCCEEEecCCccchHH
Confidence 5778899999999999999999999999999885443 555566666778888655444
No 33
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=21.79 E-value=27 Score=28.91 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=5.6
Q ss_pred hhcccccccCCccchhhhHHHHHHHHHHhhhh
Q 021496 252 AQNNVYQKQGVPFRIRAEHEALQKKLEALQNF 283 (311)
Q Consensus 252 Aq~NVyQk~GVP~RikAEHEALq~klEa~qn~ 283 (311)
++.-|+...|.| +..|-|.|..+||++..+
T Consensus 93 ~~~eilr~~g~~--l~~eEe~L~~~le~l~~~ 122 (141)
T PF13874_consen 93 RKQEILRNRGYA--LSPEEEELRKRLEALEAQ 122 (141)
T ss_dssp HHHHHHHH------------------------
T ss_pred HHHHHHHHcCCC--CCHHHHHHHHHHHHHHHH
Confidence 445588999998 778889999999888754
No 34
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=21.52 E-value=48 Score=26.92 Aligned_cols=13 Identities=46% Similarity=0.567 Sum_probs=12.0
Q ss_pred CCCceeeecCCCC
Q 021496 227 DPDTVRWIPANHP 239 (311)
Q Consensus 227 DPdtVRWIPaNHP 239 (311)
||.|=-|||.||-
T Consensus 67 DPvTGyyrPen~~ 79 (93)
T PF03242_consen 67 DPVTGYYRPENHF 79 (93)
T ss_pred CCCCccccCCCCC
Confidence 8999999999993
No 35
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=20.59 E-value=79 Score=25.00 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=27.4
Q ss_pred CchhhHHHhhhccCchhhhhhccCCcchhHHHHHHHHHHHHHHHhh
Q 021496 79 DPVAKFQETLISLPPVAFVMKRHTRSSFAIGLSLSTAFLVIVVRAF 124 (311)
Q Consensus 79 ~si~~~~~~v~s~Pp~vf~~~r~~g~nf~~g~cv~~a~l~~~~R~~ 124 (311)
++...++.. +.+.|.|+.| .++.+|+++.|++++.+.+
T Consensus 11 ~~k~~L~~~------~~~qMlkGag--~Aav~~~~~~~~l~~~~~i 48 (67)
T PF11511_consen 11 NPKFRLRAW------ILFQMLKGAG--YAAVFFLGLWFLLVALYFI 48 (67)
T ss_dssp -HHHHHHHH------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHH------HHHHHHhccc--HHHHHHHHHHHHHHHHHHH
Confidence 445556654 3488888876 5778899999998888765
No 36
>PF10484 MRP-S23: Mitochondrial ribosomal protein S23; InterPro: IPR023611 This entry represents a domain found in both the mitochondrial ribosomal 23S and 25S proteins. The function of this conserved region is not known. In Saccharomyces cerevisiae (Baker's yeast) the mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S) [, ].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome
Probab=20.55 E-value=93 Score=26.91 Aligned_cols=42 Identities=31% Similarity=0.561 Sum_probs=27.7
Q ss_pred ccCCCCCc----hHHHHHhcccccCCcCC------CCCcccCCCCCCcceee
Q 021496 129 SRYNRPGS----VEDLVRRGQLRSDRRGI------SRPLKYEDPFNNPLVKV 170 (311)
Q Consensus 129 ~~~~~~GS----VaDLVRRGQLrSdrRGi------skplkYeDPFNNPlVKv 170 (311)
+|-.+-|| |.||+|.|.++.+.|.+ +-|=++|-=|+-|+.+.
T Consensus 3 SRlEk~GtIftRv~~LlrsG~~k~~dkPLWyDVY~aFPP~~EP~~~rp~~~~ 54 (127)
T PF10484_consen 3 SRLEKIGTIFTRVRGLLRSGAMKWEDKPLWYDVYEAFPPKREPRYDRPLPKK 54 (127)
T ss_pred cchhhccchhHHHHHHHHcCCCCcccCCceeeehhcCCCCCCCcccCcCCCC
Confidence 34445566 68999999999766543 34445555577776554
No 37
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=20.51 E-value=36 Score=30.38 Aligned_cols=44 Identities=25% Similarity=0.440 Sum_probs=31.6
Q ss_pred cCCCCCCcceeecCCCcceeeec-eeeeeecceecHHHHHHHHhh
Q 021496 159 YEDPFNNPLVKVGKSNSTMEMCG-KVYRLAPITLTKEQQTIHQKR 202 (311)
Q Consensus 159 YeDPFNNPlVKv~k~~StveM~G-KvyRLaPvtLT~Eqq~~HQkR 202 (311)
..||---|+|-+|-+...+|+++ ..++|+|++.++-+..+++-|
T Consensus 118 ~~Dp~FGPvv~~G~GG~~vE~~~D~~~~l~Pl~~~~a~~mi~~l~ 162 (222)
T PF13549_consen 118 RRDPQFGPVVMFGLGGIFVELLKDVAFRLPPLSEADAREMIRELR 162 (222)
T ss_dssp EEETTTEEEEEEEE-STTHHHH---EEEESS--HHHHHHHHHTST
T ss_pred EECCCCCCEEEEcCCCceeeeecceEEeeCCCCHHHHHHHHHHHH
Confidence 46999999999999999999987 479999988766665555433
No 38
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=20.34 E-value=62 Score=27.16 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=14.0
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHhhh
Q 021496 100 RHTRSSFAIGLSLSTAFLVIVVRAFI 125 (311)
Q Consensus 100 r~~g~nf~~g~cv~~a~l~~~~R~~v 125 (311)
++...+++.|+.++++++|+++-.+.
T Consensus 74 ~~~~~~iivgvi~~Vi~Iv~~Iv~~~ 99 (179)
T PF13908_consen 74 IYFITGIIVGVICGVIAIVVLIVCFC 99 (179)
T ss_pred ccceeeeeeehhhHHHHHHHhHhhhe
Confidence 44455666666555555555544443
Done!