Query 021496
Match_columns 311
No_of_seqs 14 out of 16
Neff 1.7
Searched_HMMs 29240
Date Mon Mar 25 04:59:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dgw_Y Canavalin; duplicated s 71.8 1.2 4.1E-05 34.5 1.0 17 230-246 14-30 (93)
2 3rdy_A BWI-1=protease inhibito 56.6 6.6 0.00023 29.8 2.5 23 213-235 44-67 (79)
3 1mit_A RCMTI-V, trypsin inhibi 52.7 8.7 0.0003 27.8 2.5 21 212-232 33-53 (69)
4 1cq4_A Protein (serine protein 49.9 6.5 0.00022 26.9 1.4 18 213-230 29-46 (47)
5 1vbw_A Trypsin inhibitor BGIT; 48.8 11 0.00037 27.2 2.5 22 212-233 32-53 (68)
6 2ci2_I Chymotrypsin inhibitor 42.4 16 0.00053 27.5 2.6 22 212-233 47-68 (83)
7 1dwm_A LUTI, linum usitatissin 37.9 21 0.00072 25.6 2.6 21 213-233 35-55 (70)
8 2okm_A Collagen adhesin; colla 37.0 9.9 0.00034 32.3 0.8 21 211-234 3-23 (147)
9 1to2_I Chymotrypsin inhibitor 36.6 11 0.00036 27.0 0.8 22 212-233 28-49 (64)
10 1cse_I Eglin C; complex(serine 36.3 15 0.00051 26.7 1.6 21 213-233 34-54 (70)
11 1rtm_1 Mannose-binding protein 36.2 36 0.0012 25.3 3.8 33 267-299 10-44 (149)
12 3s8f_B Cytochrome C oxidase su 34.7 1E+02 0.0035 25.6 6.6 29 160-188 61-92 (168)
13 2xyy_A Coat protein, P22; viru 30.9 18 0.00061 35.1 1.6 41 229-270 45-93 (430)
14 2zd1_B P51 RT; P51/P66, hetero 27.2 37 0.0013 30.7 2.9 37 137-181 38-75 (428)
15 2xze_Q Charged multivesicular 25.9 34 0.0012 23.6 1.9 14 269-282 27-40 (40)
16 2dw3_A Intrinsic membrane prot 25.8 34 0.0012 26.6 2.1 38 79-124 13-50 (77)
17 3azd_A Short alpha-tropomyosin 22.1 35 0.0012 22.5 1.3 17 268-284 4-20 (37)
18 3p0s_A Capsid protein VP; icos 21.9 36 0.0012 33.1 1.9 56 142-198 393-464 (494)
19 3u97_A Ribonuclease toxin BRNT 21.3 24 0.00082 28.4 0.5 47 218-266 7-56 (114)
20 3o2t_A Symplekin; heat repeat, 21.1 35 0.0012 31.8 1.6 12 230-241 203-214 (386)
21 3epo_A Thiamine biosynthesis p 21.0 22 0.00074 36.0 0.2 44 218-261 170-243 (612)
22 1buu_A Protein (mannose-bindin 20.7 86 0.0029 24.0 3.5 32 268-299 30-63 (168)
No 1
>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y
Probab=71.80 E-value=1.2 Score=34.50 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=14.2
Q ss_pred ceeeecCCCCccccccc
Q 021496 230 TVRWIPANHPFATTAND 246 (311)
Q Consensus 230 tVRWIPaNHPFAttas~ 246 (311)
.|=|||+||||+.-|+.
T Consensus 14 ~v~vVPq~~~v~~~A~~ 30 (93)
T 1dgw_Y 14 DIIVIPSSFPVALKAAS 30 (93)
T ss_dssp CEEEECTTCCEEEEESS
T ss_pred cEEEECCCCceeEEecC
Confidence 47799999999987764
No 2
>3rdy_A BWI-1=protease inhibitor/trypsin inhibitor; serine protease inhibitor, potato inhibitor I, trypsin inhib trypsin, hydrolase inhibitor; 1.84A {Fagopyrum esculentum} SCOP: d.40.1.0 PDB: 3rdz_C
Probab=56.56 E-value=6.6 Score=29.83 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=19.9
Q ss_pred eEeeccCCCCCCCCCCCcee-eec
Q 021496 213 TIFLKEGDLIPPDVDPDTVR-WIP 235 (311)
Q Consensus 213 tvFLkEGdsvPpdVDPdtVR-WIP 235 (311)
+++|.+|+++++|.+||-|| |+-
T Consensus 44 v~Vl~~Gs~VT~Dfr~~RVrV~VD 67 (79)
T 3rdy_A 44 AIVLPEGSAVPRDLRCDRVWVFVD 67 (79)
T ss_dssp EEEEETTCCCCSCCCSSEEEEEEC
T ss_pred eEEeCCCCccCCccCCCEEEEEEC
Confidence 57899999999999999998 443
No 3
>1mit_A RCMTI-V, trypsin inhibitor V; serine protease inhibitor (RCMTI-V); NMR {Cucurbita maxima} SCOP: d.40.1.1 PDB: 1tin_A
Probab=52.67 E-value=8.7 Score=27.79 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.2
Q ss_pred ceEeeccCCCCCCCCCCCcee
Q 021496 212 PTIFLKEGDLIPPDVDPDTVR 232 (311)
Q Consensus 212 PtvFLkEGdsvPpdVDPdtVR 232 (311)
-..+|.+|++++.|.+||-||
T Consensus 33 ~v~vl~~g~~vT~Dfr~~RV~ 53 (69)
T 1mit_A 33 KAVILEEGTPVTKDFRCNRVR 53 (69)
T ss_dssp EEEEEETTCCCCSSCCTTEEE
T ss_pred eEEEecCCCccCCCcCCCEEE
Confidence 368999999999999999987
No 4
>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1
Probab=49.89 E-value=6.5 Score=26.91 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=9.1
Q ss_pred eEeeccCCCCCCCCCCCc
Q 021496 213 TIFLKEGDLIPPDVDPDT 230 (311)
Q Consensus 213 tvFLkEGdsvPpdVDPdt 230 (311)
.++|.+|++++.|.++|-
T Consensus 29 v~vl~~gs~vT~Df~~~R 46 (47)
T 1cq4_A 29 IIVLPVGTIVTMGQQQQG 46 (47)
T ss_dssp EEEEETTCCC--------
T ss_pred EEEeCCCCCcCcccCCCC
Confidence 478999999999999874
No 5
>1vbw_A Trypsin inhibitor BGIT; BGTI, protein binding; HET: TLA; 0.93A {Momordica charantia}
Probab=48.79 E-value=11 Score=27.20 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.6
Q ss_pred ceEeeccCCCCCCCCCCCceee
Q 021496 212 PTIFLKEGDLIPPDVDPDTVRW 233 (311)
Q Consensus 212 PtvFLkEGdsvPpdVDPdtVRW 233 (311)
-..+|.+|++++.|.+||-||=
T Consensus 32 ~v~vl~~g~~vT~Df~~~RV~v 53 (68)
T 1vbw_A 32 RAVIIKVGSGATKDFRCDRVRV 53 (68)
T ss_dssp EEEEEETTSCCCCSCCTTEEEE
T ss_pred eEEEecCCCccCCCcCCCEEEE
Confidence 4689999999999999999983
No 6
>2ci2_I Chymotrypsin inhibitor 2; proteinase inhibitor (chymotrypsin); 2.00A {Hordeum vulgare} SCOP: d.40.1.1 PDB: 2sni_I
Probab=42.37 E-value=16 Score=27.51 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.7
Q ss_pred ceEeeccCCCCCCCCCCCceee
Q 021496 212 PTIFLKEGDLIPPDVDPDTVRW 233 (311)
Q Consensus 212 PtvFLkEGdsvPpdVDPdtVRW 233 (311)
-..+|.+|++++.|.+||-||=
T Consensus 47 ~vrVl~~G~~VT~Dfr~dRV~V 68 (83)
T 2ci2_I 47 QIIVLPVGTIVTMEYRIDRVRL 68 (83)
T ss_dssp EEEEEETTCCCCSCCCTTEEEE
T ss_pred eEEEecCCCccCCCcCCCEEEE
Confidence 4689999999999999999983
No 7
>1dwm_A LUTI, linum usitatissinum trypsin inhibitor; serine proteinase inhibitor; NMR {Linum usitatissimum} SCOP: d.40.1.1
Probab=37.87 E-value=21 Score=25.61 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=19.2
Q ss_pred eEeeccCCCCCCCCCCCceee
Q 021496 213 TIFLKEGDLIPPDVDPDTVRW 233 (311)
Q Consensus 213 tvFLkEGdsvPpdVDPdtVRW 233 (311)
..+|.+|++++.|.+||-|+=
T Consensus 35 vrvl~pg~~vT~Dfr~~RV~v 55 (70)
T 1dwm_A 35 AIVLKEGSAMTKDFRCDRVWV 55 (70)
T ss_dssp EEEEETTCCCCCSCCTTEEEE
T ss_pred EEEecCCCccCCccCCCeEEE
Confidence 678999999999999999873
No 8
>2okm_A Collagen adhesin; collagen-binding, cell adhesion; 1.65A {Enterococcus faecalis}
Probab=36.97 E-value=9.9 Score=32.28 Aligned_cols=21 Identities=38% Similarity=0.754 Sum_probs=17.5
Q ss_pred CceEeeccCCCCCCCCCCCceeee
Q 021496 211 RPTIFLKEGDLIPPDVDPDTVRWI 234 (311)
Q Consensus 211 RPtvFLkEGdsvPpdVDPdtVRWI 234 (311)
.|..|.|-||-.| |++.|||.
T Consensus 3 ~~~FyyKtGdm~~---d~~~VRWf 23 (147)
T 2okm_A 3 DYPFFYKVGDLAG---ESNQVRWF 23 (147)
T ss_dssp CCCSEEEEEECCS---STTEEEEE
T ss_pred CcccEEeccCCCC---CCCeEEEE
Confidence 4668999999964 78999995
No 9
>1to2_I Chymotrypsin inhibitor 2; serine protease, hydrolase; HET: CIT 15P; 1.30A {Hordeum vulgare subsp} SCOP: d.40.1.1 PDB: 1tm3_I* 1tm5_I* 1tm1_I* 1tm7_I* 1tm4_I* 1y4a_I* 1y4d_I 1tmg_I* 1lw6_I 1y3b_I* 1y1k_I* 1y34_I* 1y48_I* 1y3d_I* 1y3c_I* 1y33_I* 1to1_I* 1y3f_I* 3ci2_A 1coa_I ...
Probab=36.64 E-value=11 Score=26.98 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.5
Q ss_pred ceEeeccCCCCCCCCCCCceee
Q 021496 212 PTIFLKEGDLIPPDVDPDTVRW 233 (311)
Q Consensus 212 PtvFLkEGdsvPpdVDPdtVRW 233 (311)
-..+|.+|++++.|.+||-||=
T Consensus 28 ~v~vl~~g~~vT~Df~~~RV~v 49 (64)
T 1to2_I 28 QIIVLPVGTIVTKEYRIDRVRL 49 (64)
T ss_dssp EEEEEETTCEEECBCCTTEEEE
T ss_pred eEEEecCCCccCCCcCCCEEEE
Confidence 3579999999999999999983
No 10
>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B
Probab=36.35 E-value=15 Score=26.68 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.2
Q ss_pred eEeeccCCCCCCCCCCCceee
Q 021496 213 TIFLKEGDLIPPDVDPDTVRW 233 (311)
Q Consensus 213 tvFLkEGdsvPpdVDPdtVRW 233 (311)
..+|.+|++++.|.+||-||=
T Consensus 34 v~vl~~g~~vT~Df~~~RV~V 54 (70)
T 1cse_I 34 VYFLPEGSPVTLDLRYNRVRV 54 (70)
T ss_dssp EEEEETTCCEECCCCTTEEEE
T ss_pred EEEecCCCccCCccCCCeEEE
Confidence 589999999999999999983
No 11
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=36.20 E-value=36 Score=25.29 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhcc--eeEEee
Q 021496 267 RAEHEALQKKLEALQNFNNCRHFCRHG--CFYLLT 299 (311)
Q Consensus 267 kAEHEALq~klEa~qn~~kl~~~~~~~--~~~~~~ 299 (311)
+.+..+||++|+.+++..-+.....+| ||++..
T Consensus 10 ~~~~~~l~~~l~~l~~~~~~~~w~~~~~~Cy~~~~ 44 (149)
T 1rtm_1 10 EAEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNH 44 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCTTSCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhcCCCeEEeCCEEEEEeC
Confidence 456778888888888766666655554 776654
No 12
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=34.72 E-value=1e+02 Score=25.58 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=18.8
Q ss_pred CCCCCCcc--ee-ecCCCcceeeeceeeeeec
Q 021496 160 EDPFNNPL--VK-VGKSNSTMEMCGKVYRLAP 188 (311)
Q Consensus 160 eDPFNNPl--VK-v~k~~StveM~GKvyRLaP 188 (311)
+-||.+|= ++ ++.+.-+|+|-++-|+..|
T Consensus 61 ~~~f~~pg~a~~~~~~~~v~V~m~a~~~~f~P 92 (168)
T 3s8f_B 61 EGPWADPAQAVVQTGPNQYTVYVLAFAFGYQP 92 (168)
T ss_dssp SSTTSCGGGCEEEEETTEEEEEEEEETTEEES
T ss_pred ccccCCCCcccccCCCCeEEEEEEEEeceEec
Confidence 45999997 53 4556667777766555443
No 13
>2xyy_A Coat protein, P22; virus, icosahedral reconstruction; 3.80A {Enterobacteria phage P22} PDB: 2xyz_A 3iyh_A 3iyi_A
Probab=30.86 E-value=18 Score=35.09 Aligned_cols=41 Identities=22% Similarity=0.397 Sum_probs=34.5
Q ss_pred CceeeecCC---C-----CcccccccccHHHhhcccccccCCccchhhhH
Q 021496 229 DTVRWIPAN---H-----PFATTANDIDEDLAQNNVYQKQGVPFRIRAEH 270 (311)
Q Consensus 229 dtVRWIPaN---H-----PFAttas~iDEdlAq~NVyQk~GVP~RikAEH 270 (311)
||| |||+- + ||+..+++++|....-++=+-+-|||++.||-
T Consensus 45 dtv-~~Pv~~~~~~~dg~~~t~~~~~~~e~~V~~~~~~~~~v~~~~~ake 93 (430)
T 2xyy_A 45 NTI-WMPVEQESPTQEGWDLTDKATGLLELNVAVNMGEPDNDFFQLRADD 93 (430)
T ss_pred CeE-EeccCccccccccCcccCCCCccccceeeEEecCcccccEEechhH
Confidence 566 88863 3 89999999999888888888889999999984
No 14
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=27.18 E-value=37 Score=30.72 Aligned_cols=37 Identities=22% Similarity=0.481 Sum_probs=27.5
Q ss_pred hHHHHHhcccccCCcCCCCCcccCCCCCCcceeecCCCcc-eeeec
Q 021496 137 VEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNST-MEMCG 181 (311)
Q Consensus 137 VaDLVRRGQLrSdrRGiskplkYeDPFNNPlVKv~k~~St-veM~G 181 (311)
|.+|.+.|-++- ...+.|+++|.+-|.|.+++ .+||-
T Consensus 38 i~~ll~~G~I~~--------v~s~s~~~sPv~~V~Kk~g~k~R~~v 75 (428)
T 2zd1_B 38 CTEMEKEGKISK--------IGPENPYNTPVFAIKKKDSTKWRKLV 75 (428)
T ss_dssp HHHHHHTTSEEE--------CCTTCCCBBCEEEECCTTCSSCEEEE
T ss_pred HHHHHHCCCceE--------CCCCCCccCceeeccCCCCCceEEEE
Confidence 567777777762 22346999999999998874 88884
No 15
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=25.85 E-value=34 Score=23.62 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHhhh
Q 021496 269 EHEALQKKLEALQN 282 (311)
Q Consensus 269 EHEALq~klEa~qn 282 (311)
+.+++|.||.||.+
T Consensus 27 di~~MqsRLaALRS 40 (40)
T 2xze_Q 27 ALEAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC
Confidence 46899999999864
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=25.84 E-value=34 Score=26.58 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=28.3
Q ss_pred CchhhHHHhhhccCchhhhhhccCCcchhHHHHHHHHHHHHHHHhh
Q 021496 79 DPVAKFQETLISLPPVAFVMKRHTRSSFAIGLSLSTAFLVIVVRAF 124 (311)
Q Consensus 79 ~si~~~~~~v~s~Pp~vf~~~r~~g~nf~~g~cv~~a~l~~~~R~~ 124 (311)
++...++..+ .+.|.|+.| .++.+|+++.|++++.+.+
T Consensus 13 ~~k~rLr~~i------~~qMlkGAg--~AAv~f~~~~~~lv~l~~i 50 (77)
T 2dw3_A 13 NPKTNLRLWV------AFQMMKGAG--WAGGVFFGTLLLIGFFRVV 50 (77)
T ss_dssp CHHHHHHHHH------HHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHH------HHHHHhccc--HHHHHHHHHHHHHHHHHHH
Confidence 3445666654 488988876 5788899999998888765
No 17
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=22.14 E-value=35 Score=22.52 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHhhhhh
Q 021496 268 AEHEALQKKLEALQNFN 284 (311)
Q Consensus 268 AEHEALq~klEa~qn~~ 284 (311)
++.+|+++||..++++.
T Consensus 4 ~~i~avKkKiq~lq~q~ 20 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQN 20 (37)
T ss_dssp --CHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 46789999999998754
No 18
>3p0s_A Capsid protein VP; icosahedral virus capsid, virus-like particle, capsid protei barrel; 3.10A {Bombyx mori densovirus 1}
Probab=21.90 E-value=36 Score=33.05 Aligned_cols=56 Identities=23% Similarity=0.249 Sum_probs=28.9
Q ss_pred HhcccccCCcCCCC--------------CcccCCCCCCcceeecCC--CcceeeeceeeeeecceecHHHHHH
Q 021496 142 RRGQLRSDRRGISR--------------PLKYEDPFNNPLVKVGKS--NSTMEMCGKVYRLAPITLTKEQQTI 198 (311)
Q Consensus 142 RRGQLrSdrRGisk--------------plkYeDPFNNPlVKv~k~--~StveM~GKvyRLaPvtLT~Eqq~~ 198 (311)
|---|.|-|++|++ -.+|+|||+-||+.-..- +.| .--|-.-|++|=+-.+|+++.
T Consensus 393 ~l~glqstrew~~rtdtiPpq~ftsqy~qfr~~~~~~~pl~~~~~~~~~pt-~rpgM~s~~~~~r~~~~~~~~ 464 (494)
T 3p0s_A 393 RLTGLQSTREWVARTDRIPPQYFTSQYTQFRYPNINETPLLRSLGTFKLPT-KRPGMDSRIAAGRAAETTQDE 464 (494)
T ss_dssp EEEEEECCSSCCCSSSSCCCCCSSCCCEEEECSSTTSCCCEECTTCCEETT-TEECEECCSBC----------
T ss_pred EEeeccccccceeecCccCchhhcccccccccCCcccCcccccccccccCC-CCccccccCCCCccchhhhHH
Confidence 33456677888877 257999999999953210 011 123555678998877776653
No 19
>3u97_A Ribonuclease toxin BRNT; RNAse SA/RELE small ribonuclease fold, bRNA, H; HET: MSE; 1.10A {Brucella abortus}
Probab=21.33 E-value=24 Score=28.36 Aligned_cols=47 Identities=28% Similarity=0.403 Sum_probs=19.1
Q ss_pred cCCCCCC---CCCCCceeeecCCCCcccccccccHHHhhcccccccCCccch
Q 021496 218 EGDLIPP---DVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRI 266 (311)
Q Consensus 218 EGdsvPp---dVDPdtVRWIPaNHPFAttas~iDEdlAq~NVyQk~GVP~Ri 266 (311)
-|.|||. +.|..+--+.-.=|||.- .=+-||+-++.|. +||||.|--
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~M-~FEWDe~K~~~Nl-~KHGVsFee 56 (114)
T 3u97_A 7 HGKPIPNPLLGLDSTENLYFQGIDPFTM-KIIWDEPKRQTNI-AKHGLDFAD 56 (114)
T ss_dssp --------------------------CC-EEECCHHHHHHHH-HHHSCCGGG
T ss_pred CCCcCCCcccccccccceeEeccCCCce-eeEECHHHHHHHH-HHHCcCHHH
Confidence 3666764 456555566777788863 2356999999997 899999963
No 20
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=21.14 E-value=35 Score=31.80 Aligned_cols=12 Identities=33% Similarity=0.902 Sum_probs=9.9
Q ss_pred ceeeecCCCCcc
Q 021496 230 TVRWIPANHPFA 241 (311)
Q Consensus 230 tVRWIPaNHPFA 241 (311)
.+-|||.||||-
T Consensus 203 SL~~VP~nHp~L 214 (386)
T 3o2t_A 203 SLDRIPRDHPYI 214 (386)
T ss_dssp CGGGSCTTCSSS
T ss_pred CHhhCCCCCCcC
Confidence 355999999986
No 21
>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM superfamily, biosynthetic protein; HET: MP5; 2.10A {Caulobacter crescentus} PDB: 3epm_A* 3epn_A*
Probab=20.99 E-value=22 Score=35.96 Aligned_cols=44 Identities=30% Similarity=0.378 Sum_probs=31.3
Q ss_pred cCCCCCCCCCCCcee--------eecCC--CCcc--------------------cccccccHHHhhcccccccC
Q 021496 218 EGDLIPPDVDPDTVR--------WIPAN--HPFA--------------------TTANDIDEDLAQNNVYQKQG 261 (311)
Q Consensus 218 EGdsvPpdVDPdtVR--------WIPaN--HPFA--------------------ttas~iDEdlAq~NVyQk~G 261 (311)
-|-++|..+|||.|| =||+| ||-. +..++|+||+.|-.+-.+-|
T Consensus 170 ~~~~~~~~i~pE~vR~~VA~Gr~VIPaN~nh~~~~P~~IG~~l~tKVNaNIGtS~~~~~ie~EveK~~~A~~~G 243 (612)
T 3epo_A 170 FGASIPDFVTPEFVRQEIARGRAIIPANINHGELEPMAIGRNFLVKINANIGNSAVLSTVADEVDKLVWATRWG 243 (612)
T ss_dssp SSCCCCSSCCHHHHHHHHHHTSEECCCCTTCTTCCCCCEETTSCCEEEEEECC-----CHHHHHHHHHHHHHTT
T ss_pred ccccCCCCcCHHHHHHHHhCCeEEeecCCCCCCCCeeEECCCceeEEeeeecCCCCCCCHHHHHHHHHHHHHcC
Confidence 366789999999998 59997 7742 23458888888877766666
No 22
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=20.71 E-value=86 Score=24.03 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhc--ceeEEee
Q 021496 268 AEHEALQKKLEALQNFNNCRHFCRH--GCFYLLT 299 (311)
Q Consensus 268 AEHEALq~klEa~qn~~kl~~~~~~--~~~~~~~ 299 (311)
.+..+|+.+|..+++.........+ .||++..
T Consensus 30 ~~~~~L~~~l~~l~~~~~~~~~~~~~~~Cy~~~~ 63 (168)
T 1buu_A 30 AEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNH 63 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCTTSCEEEEEE
T ss_pred HHHHHHHHHHHHHhccccCCCeEEECCEEEEEeC
Confidence 4555666666666554333444433 4766654
Done!