Query 021496
Match_columns 311
No_of_seqs 14 out of 16
Neff 1.7
Searched_HMMs 13730
Date Mon Mar 25 04:59:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021496.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021496hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gpja2 c.2.1.7 (A:144-302) Gl 62.3 3.2 0.00023 31.2 3.6 34 191-230 99-132 (159)
2 d2epra1 g.37.1.1 (A:350-384) P 50.4 1.6 0.00011 28.2 0.0 12 174-185 5-16 (35)
3 d1hzta_ d.113.1.2 (A:) Isopent 48.0 3.5 0.00025 30.3 1.6 46 225-281 100-149 (153)
4 d1ax8a_ a.26.1.1 (A:) Leptin ( 39.0 7.2 0.00053 31.1 2.3 46 233-282 39-90 (144)
5 g1hym.1 d.40.1.1 (A:,B:) Tryps 37.1 10 0.00074 26.5 2.6 24 212-235 32-56 (68)
6 d1dwma_ d.40.1.1 (A:) Trypsin 33.7 12 0.00089 26.2 2.6 23 213-235 34-57 (69)
7 d1csei_ d.40.1.1 (I:) Eglin C 32.6 8.7 0.00064 26.5 1.6 23 213-235 27-50 (63)
8 d1ztwa1 e.8.1.2 (A:24-278) MML 28.2 16 0.0012 28.9 2.7 35 137-181 55-90 (255)
9 d1wiba_ d.47.1.1 (A:) 60S ribo 27.1 15 0.0011 27.0 2.1 36 218-253 3-40 (92)
10 d2zd1b1 e.8.1.2 (B:5-428) HIV- 24.1 20 0.0015 31.3 2.8 38 137-182 34-72 (424)
11 d1mu2a2 e.8.1.2 (A:3-429) HIV- 23.4 19 0.0014 31.6 2.5 37 137-181 36-73 (427)
12 d1yu5x1 a.14.1.1 (X:10-76) Vil 22.5 11 0.00077 26.5 0.5 13 219-231 17-29 (67)
13 d1to2i_ d.40.1.1 (I:) Chymotry 21.9 13 0.00093 25.7 0.8 22 213-234 29-51 (64)
14 d2p0ma1 a.119.1.2 (A:113-663) 21.8 16 0.0011 33.2 1.6 45 191-241 12-56 (551)
15 d1hara_ e.8.1.2 (A:) HIV-1 rev 21.1 23 0.0017 28.1 2.3 38 137-182 38-76 (216)
16 d2omzb1 b.1.6.1 (B:-2-101) E-c 20.8 14 0.001 25.2 0.9 18 206-223 2-19 (104)
17 d1pcsa_ b.6.1.1 (A:) Plastocya 20.5 30 0.0022 23.3 2.6 22 206-236 13-34 (98)
No 1
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=62.25 E-value=3.2 Score=31.22 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=27.2
Q ss_pred ecHHHHHHHHhhhcccccccCceEeeccCCCCCCCCCCCc
Q 021496 191 LTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDT 230 (311)
Q Consensus 191 LT~Eqq~~HQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdt 230 (311)
+|+|.-....++|. +++|.+|+--| +|+||||+.
T Consensus 99 i~~~~i~~~~~~r~----~~~~~~iiDla--vPr~vd~~v 132 (159)
T d1gpja2 99 IHVDDVREALRKRD----RRSPILIIDIA--NPRDVEEGV 132 (159)
T ss_dssp BCHHHHHHHHHHCS----SCCCEEEEECC--SSCSBCTTG
T ss_pred ccHhhhHHHHHhcc----cCCCeEEEeec--CCCCcChhh
Confidence 78888777777664 57999999875 999999973
No 2
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.40 E-value=1.6 Score=28.24 Aligned_cols=12 Identities=42% Similarity=1.101 Sum_probs=9.8
Q ss_pred Ccceeeeceeee
Q 021496 174 NSTMEMCGKVYR 185 (311)
Q Consensus 174 ~StveM~GKvyR 185 (311)
+-.-+||||.||
T Consensus 5 ~~~ce~cgk~fr 16 (35)
T d2epra1 5 QVACEICGKIFR 16 (35)
T ss_dssp SEEETTTTEEES
T ss_pred hhhHHHHHHHHH
Confidence 445789999998
No 3
>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}
Probab=47.99 E-value=3.5 Score=30.35 Aligned_cols=46 Identities=17% Similarity=0.370 Sum_probs=30.2
Q ss_pred CCCCC---ceeeecCCCCcccccccccHHHhhcccccccCCc-cchhhhHHHHHHHHHHhh
Q 021496 225 DVDPD---TVRWIPANHPFATTANDIDEDLAQNNVYQKQGVP-FRIRAEHEALQKKLEALQ 281 (311)
Q Consensus 225 dVDPd---tVRWIPaNHPFAttas~iDEdlAq~NVyQk~GVP-~RikAEHEALq~klEa~q 281 (311)
..||+ .++|++. +||.++++.+- ++- .| |++.++|.+++++|.+.-
T Consensus 100 ~~~~~Ev~~~~W~~~--------~el~~~i~~~p--~~~-tpW~~~~~~~~~~~~~l~~~~ 149 (153)
T d1hzta_ 100 QINDDEVMDYQWCDL--------ADVLHGIDATP--WAF-SPWMVMQATNREARKRLSAFT 149 (153)
T ss_dssp CCCTTTEEEEEEECH--------HHHHHHHHHCG--GGB-CHHHHHHHHSHHHHHHHHHTT
T ss_pred cCChhheeEEEEeeH--------HHHHHHHHcCC--ccc-CHHHHHHHhhHHHHHHHHHHH
Confidence 33555 6799974 45655554432 111 35 899999999999987653
No 4
>d1ax8a_ a.26.1.1 (A:) Leptin (obesity protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.04 E-value=7.2 Score=31.13 Aligned_cols=46 Identities=39% Similarity=0.637 Sum_probs=35.5
Q ss_pred eecCCCCcccccccccHHHhhcccccc--cCCccc----hhhhHHHHHHHHHHhhh
Q 021496 233 WIPANHPFATTANDIDEDLAQNNVYQK--QGVPFR----IRAEHEALQKKLEALQN 282 (311)
Q Consensus 233 WIPaNHPFAttas~iDEdlAq~NVyQk--~GVP~R----ikAEHEALq~klEa~qn 282 (311)
.||++||+-+-+ .+|+-|| +||+ +-.|++ |....|-|+..|+.+--
T Consensus 39 fiP~~~pi~sLs-smdqTL~---~yQ~iL~sLp~~~v~QI~nDlenLr~lL~~lat 90 (144)
T d1ax8a_ 39 FIPGLHPILTLS-KMDQTLA---VYQQILTSMPSRNVIQISNDLENLRDLLHVLAF 90 (144)
T ss_dssp SCCCSSCCSSHH-HHHHHHH---HHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccccccHH-HHHHHHH---HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 499999998754 5888886 5776 466765 77888999999887643
No 5
>g1hym.1 d.40.1.1 (A:,B:) Trypsin inhibitor V {Pumpkin (Cucurbita maxima) [TaxId: 3661]}
Probab=37.14 E-value=10 Score=26.53 Aligned_cols=24 Identities=29% Similarity=0.663 Sum_probs=20.7
Q ss_pred ceEeeccCCCCCCCCCCCcee-eec
Q 021496 212 PTIFLKEGDLIPPDVDPDTVR-WIP 235 (311)
Q Consensus 212 PtvFLkEGdsvPpdVDPdtVR-WIP 235 (311)
-.+.|.||.+++.|.++|-|| |+=
T Consensus 32 ~v~vlp~gs~vt~Dfr~~RVrv~Vd 56 (68)
T g1hym.1 32 KAVILEEGTPVTKDFRCNRVRIWVN 56 (68)
T ss_dssp EEEEEECCSCCCCCCCTTEEEEEEE
T ss_pred eEEEeeCCCcccCcccCCEEEEEEC
Confidence 367899999999999999998 543
No 6
>d1dwma_ d.40.1.1 (A:) Trypsin inhibitor LUTI {Flax (Linum usitatissimum) [TaxId: 4006]}
Probab=33.73 E-value=12 Score=26.21 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.3
Q ss_pred eEeeccCCCCCCCCCCCcee-eec
Q 021496 213 TIFLKEGDLIPPDVDPDTVR-WIP 235 (311)
Q Consensus 213 tvFLkEGdsvPpdVDPdtVR-WIP 235 (311)
.+.|.||.+++.|.++|-|| |+=
T Consensus 34 v~v~~~gs~vt~Dfr~~RVrv~Vd 57 (69)
T d1dwma_ 34 AIVLKEGSAMTKDFRCDRVWVIVN 57 (69)
T ss_dssp EEEEETTCCCCCSCCTTEEEEEEC
T ss_pred EEEeeCCCcccCcccCCEEEEEEC
Confidence 67899999999999999998 553
No 7
>d1csei_ d.40.1.1 (I:) Eglin C {Leech (Hirudo medicinalis) [TaxId: 6421]}
Probab=32.61 E-value=8.7 Score=26.49 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.9
Q ss_pred eEeeccCCCCCCCCCCCcee-eec
Q 021496 213 TIFLKEGDLIPPDVDPDTVR-WIP 235 (311)
Q Consensus 213 tvFLkEGdsvPpdVDPdtVR-WIP 235 (311)
.++|.||.+++.|.++|-|| |+=
T Consensus 27 v~v~p~gs~vt~Dfr~~RVrv~Vd 50 (63)
T d1csei_ 27 VYFLPEGSPVTLDLRYNRVRVFYN 50 (63)
T ss_dssp EEEEETTCCEECCCCTTEEEEEEE
T ss_pred EEEEeCCCcccCcccCCEEEEEEE
Confidence 68999999999999999998 763
No 8
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=28.20 E-value=16 Score=28.93 Aligned_cols=35 Identities=26% Similarity=0.512 Sum_probs=27.7
Q ss_pred hHHHHHhcccccCCcCCCCCcccCCCCCCcceeecCCCcc-eeeec
Q 021496 137 VEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNST-MEMCG 181 (311)
Q Consensus 137 VaDLVRRGQLrSdrRGiskplkYeDPFNNPlVKv~k~~St-veM~G 181 (311)
|++|...|.++- -+.||++|.+=|.|.+++ ..||.
T Consensus 55 i~~ll~~G~I~p----------~~s~~~sp~~~V~Kk~~~~~R~v~ 90 (255)
T d1ztwa1 55 IQRLLDQGILVP----------CQSPWNTPLLPVKKPGTNDYRPVQ 90 (255)
T ss_dssp HHHHHHHTSEEE----------ECCSCBCCEEECCSSSSCCCCEEE
T ss_pred HHHHhhhceeee----------cCCCcccccccccccccceEEEee
Confidence 689999998862 134899999999988764 77886
No 9
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.07 E-value=15 Score=27.01 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=23.4
Q ss_pred cCCCCCCCCCCCceeeecCCCCc--ccccccccHHHhh
Q 021496 218 EGDLIPPDVDPDTVRWIPANHPF--ATTANDIDEDLAQ 253 (311)
Q Consensus 218 EGdsvPpdVDPdtVRWIPaNHPF--Attas~iDEdlAq 253 (311)
.|.+-||-+||++|+.|=-.=+= |+.+.-|...|.+
T Consensus 3 ~~~~~ppK~dp~~v~~Ikl~v~gG~A~p~PplgP~LGp 40 (92)
T d1wiba_ 3 SGSSGPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGP 40 (92)
T ss_dssp CCCCCCCCCCSSSCEEEEEEEETTCCCCSSCSHHHHTT
T ss_pred CcCCCCCCCCCCceEEEEEEEecCccCCCCCccccccc
Confidence 58889999999999998422111 3334445555655
No 10
>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=24.05 E-value=20 Score=31.30 Aligned_cols=38 Identities=21% Similarity=0.473 Sum_probs=28.6
Q ss_pred hHHHHHhcccccCCcCCCCCcccCCCCCCcceeecCCCcc-eeeece
Q 021496 137 VEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNST-MEMCGK 182 (311)
Q Consensus 137 VaDLVRRGQLrSdrRGiskplkYeDPFNNPlVKv~k~~St-veM~GK 182 (311)
+.+|.+.|.++- ..=+.|||+|.+-|-|.+++ .+||.-
T Consensus 34 i~~ll~~G~I~~--------~~s~Sp~~sPvf~V~KKdg~k~R~~iD 72 (424)
T d2zd1b1 34 CTEMEKEGKISK--------IGPENPYNTPVFAIKKKDSTKWRKLVD 72 (424)
T ss_dssp HHHHHHTTSEEE--------CCTTCCCBBCEEEECCTTCSSCEEEEC
T ss_pred HHHHHHCCeeEe--------cCCCCCCcCCeEEEEeCCCCceEEEEc
Confidence 477888888762 11257999999999998876 889864
No 11
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=23.37 E-value=19 Score=31.56 Aligned_cols=37 Identities=24% Similarity=0.437 Sum_probs=26.5
Q ss_pred hHHHHHhcccccCCcCCCCCcccCCCCCCcceeecCCC-cceeeec
Q 021496 137 VEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSN-STMEMCG 181 (311)
Q Consensus 137 VaDLVRRGQLrSdrRGiskplkYeDPFNNPlVKv~k~~-StveM~G 181 (311)
|.+|.+.|.++. -..+.|||.|.+=|-|.+ ...+||.
T Consensus 36 i~ell~~G~I~~--------~ps~Sp~~sPvf~V~KKd~gk~Rl~v 73 (427)
T d1mu2a2 36 CEKMEKEGQLEE--------APPTNPYNTPTFAIKKKDKNKWRMLI 73 (427)
T ss_dssp HHHHHHHTSEEE--------CCTTCCCBBCEEECCCCC----CEEE
T ss_pred HHHHHHCCeEEe--------CCCCCcCcCceEEEEcCCCCCcEEEE
Confidence 578889998872 113679999999998887 4578885
No 12
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=22.45 E-value=11 Score=26.52 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCce
Q 021496 219 GDLIPPDVDPDTV 231 (311)
Q Consensus 219 GdsvPpdVDPdtV 231 (311)
.+++|+||||.-.
T Consensus 17 ~~~lP~gVD~~~l 29 (67)
T d1yu5x1 17 AEDLPRGVDPSRK 29 (67)
T ss_dssp GGGSCTTCCTTCG
T ss_pred cccCCCCCChHHH
Confidence 5789999999754
No 13
>d1to2i_ d.40.1.1 (I:) Chymotrypsin inhibitor CI-2 {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=21.88 E-value=13 Score=25.72 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.8
Q ss_pred eEeeccCCCCCCCCCCCcee-ee
Q 021496 213 TIFLKEGDLIPPDVDPDTVR-WI 234 (311)
Q Consensus 213 tvFLkEGdsvPpdVDPdtVR-WI 234 (311)
.+.|.||.+++.|.++|-|| |+
T Consensus 29 v~v~p~gs~vt~Dfr~~RVrv~V 51 (64)
T d1to2i_ 29 IIVLPVGTIVTKEYRIDRVRLFV 51 (64)
T ss_dssp EEEEETTCEEECBCCTTEEEEEE
T ss_pred EEEecCCCcccCcccCCEEEEEE
Confidence 67899999999999999998 44
No 14
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=21.78 E-value=16 Score=33.24 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=35.0
Q ss_pred ecHHHHHHHHhhhcccccccCceEeeccCCCCCCCCCCCceeeecCCCCcc
Q 021496 191 LTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRWIPANHPFA 241 (311)
Q Consensus 191 LT~Eqq~~HQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdtVRWIPaNHPFA 241 (311)
|=+||+..--+-|.+.|+|+.- .+-+|..||+.+++.||.+--|.
T Consensus 12 ~~~~~R~~EL~~~~~~Y~w~~~------~~G~P~~~~~~~~~~lP~de~f~ 56 (551)
T d2p0ma1 12 LFQKHREQELEERRKLYQWGSW------KEGLILNVAGSKLTDLPVDERFL 56 (551)
T ss_dssp TTHHHHHHHHHHHHHHSCEECS------STTSCCEESCSSGGGSCGGGSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCC------CCCCCcccCccccccCChhhccc
Confidence 4567766666666789999742 34489999999999999998885
No 15
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=21.09 E-value=23 Score=28.13 Aligned_cols=38 Identities=21% Similarity=0.469 Sum_probs=22.2
Q ss_pred hHHHHHhcccccCCcCCCCCcccCCCCCCcceeecCCCcc-eeeece
Q 021496 137 VEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNST-MEMCGK 182 (311)
Q Consensus 137 VaDLVRRGQLrSdrRGiskplkYeDPFNNPlVKv~k~~St-veM~GK 182 (311)
+.+|.+.|.++- ..=..|||+|.+=|-|.+++ ..||.-
T Consensus 38 i~~ll~~G~I~~--------~~s~s~~~sPv~~v~Kk~g~k~R~~vD 76 (216)
T d1hara_ 38 CTEMEKEGKISK--------IGPENPYNTPVFAIKKKDSTKWAKLVD 76 (216)
T ss_dssp HHHHHHTTSEEE--------CCTTCCCBCCEEEC-------CCEEEC
T ss_pred HHHHHHCCcEEE--------CCCCCCCcceEEEEEeCCCCcceeecc
Confidence 467777777752 11246899999999888876 777753
No 16
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.83 E-value=14 Score=25.19 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.2
Q ss_pred cccccCceEeeccCCCCC
Q 021496 206 AYQWKRPTIFLKEGDLIP 223 (311)
Q Consensus 206 AYqWKRPtvFLkEGdsvP 223 (311)
.++|.-|+|++.|.++-|
T Consensus 2 ~~~w~~~pi~v~EN~~~~ 19 (104)
T d2omzb1 2 LGSWVIPPISCPENEKGP 19 (104)
T ss_dssp STTEECCCCCEESSCCSS
T ss_pred CCcccCCcEEEeCCCCCC
Confidence 589999999999988644
No 17
>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]}
Probab=20.54 E-value=30 Score=23.28 Aligned_cols=22 Identities=27% Similarity=0.697 Sum_probs=17.5
Q ss_pred cccccCceEeeccCCCCCCCCCCCceeeecC
Q 021496 206 AYQWKRPTIFLKEGDLIPPDVDPDTVRWIPA 236 (311)
Q Consensus 206 AYqWKRPtvFLkEGdsvPpdVDPdtVRWIPa 236 (311)
.+.|.-++|-++.|| ||+|+..
T Consensus 13 ~~~F~P~~i~v~~Gd---------tV~~~n~ 34 (98)
T d1pcsa_ 13 ALVFEPSTVTIKAGE---------EVKWVNN 34 (98)
T ss_dssp CSSEESSEEEECTTC---------EEEEEEC
T ss_pred ceEEeCCEEEECCCC---------EEEEeEC
Confidence 356777888899996 8999854
Done!