BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021498
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 3/106 (2%)
Query: 12 LKKGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLLRCGKSCRLRWTNYLRPDLKRGLL 70
L KGPWT EED+K+I + G W + K L G R GK CR RW N+L P++K+
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG--RLGKQCRERWHNHLNPEVKKSSW 62
Query: 71 SEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKL 116
+E E++++ + H LGNRW++IA LPGRTDN +KNHWN+ IK+K+
Sbjct: 63 TEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 63 PDLKRGLLSEYEEKMVIDLHAQLGNR-WSKIASHLPGRTDNEIKNHWNTHIKKKLRK 118
PDL +G ++ E++ VI+L + G + W+ IA HL GR + + W+ H+ +++K
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKK 59
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 72/106 (67%), Gaps = 3/106 (2%)
Query: 12 LKKGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLLRCGKSCRLRWTNYLRPDLKRGLL 70
L KGPWT EED+++I + G W + K L G R GK CR RW N+L P++K+
Sbjct: 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSW 113
Query: 71 SEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKL 116
+E E++++ H +LGNRW++IA LPGRTDN IKNHWN+ +++K+
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 12 LKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLL--RCGKSCRLRWTNYLRPDLKRGL 69
L K WT EED+KL + NG W+ + A L R C+ RW L P+L +G
Sbjct: 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVI---ANYLPNRTDVQCQHRWQKVLNPELIKGP 60
Query: 70 LSEYEEKMVIDLHAQLG-NRWSKIASHLPGRTDNEIKNHWNTHIKKKLRK 118
++ E++ VI L + G RWS IA HL GR + + W+ H+ +++K
Sbjct: 61 WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 110
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 72/106 (67%), Gaps = 3/106 (2%)
Query: 12 LKKGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLLRCGKSCRLRWTNYLRPDLKRGLL 70
L KGPWT EED+++I + G W + K L G R GK CR RW N+L P++K+
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSW 59
Query: 71 SEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKL 116
+E E++++ H +LGNRW++IA LPGRTDN IKNHWN+ +++K+
Sbjct: 60 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 64 DLKRGLLSEYEEKMVIDLHAQLG-NRWSKIASHLPGRTDNEIKNHWNTHIKKKLRK 118
+L +G ++ E++ VI L + G RWS IA HL GR + + W+ H+ +++K
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 56
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 72/106 (67%), Gaps = 3/106 (2%)
Query: 12 LKKGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLLRCGKSCRLRWTNYLRPDLKRGLL 70
L KGPWT EED+++I + G W + K L G R GK CR RW N+L P++K+
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSW 59
Query: 71 SEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKL 116
+E E++++ H +LGNRW++IA LPGRTDN IKNHWN+ +++K+
Sbjct: 60 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 65 LKRGLLSEYEEKMVIDLHAQLG-NRWSKIASHLPGRTDNEIKNHWNTHIKKKLRK 118
L +G ++ E++ VI L + G RWS IA HL GR + + W+ H+ +++K
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 56
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 72/106 (67%), Gaps = 3/106 (2%)
Query: 12 LKKGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLLRCGKSCRLRWTNYLRPDLKRGLL 70
L KGPWT EED+++I + G W + K L G R GK CR RW N+L P++K+
Sbjct: 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG--RIGKQCRERWHNHLNPEVKKTSW 82
Query: 71 SEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKL 116
+E E++++ H +LGNRW++IA LPGRTDN +KNHWN+ +++K+
Sbjct: 83 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 48 RCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLG-NRWSKIASHLPGRTDNEIKN 106
R C+ RW L P+L +G ++ E++ VI+ + G RWS IA HL GR + +
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67
Query: 107 HWNTHIKKKLRK 118
W+ H+ +++K
Sbjct: 68 RWHNHLNPEVKK 79
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLL--RCGKSCRLRWTNYLRPDLKRGLLS 71
KGP+T ED + ++ NG W P++ L R K CR RW N+L P + + +
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72 EYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKL 116
E++ + + +LG++WS IA +PGRTDN IKN WN+ I K++
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 67 RGLLSEYEEKMVIDLHAQLG-NRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDP 123
+G +E E+ ++ + + G W +I S LP R+ + + W H+ + K P
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTP 59
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEY 73
K +T EED KL ++ G W + +L + R + CR RW NY+ P L+ S
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74 EEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHW 108
E+ ++ +A+ G +W+KI+ L R+DN I+N W
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 40/52 (76%)
Query: 65 LKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKL 116
+K+ +E E++++ H +LGNRW++IA LPGRTDN IKNHWN+ +++K+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 41/53 (77%)
Query: 64 DLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKL 116
++K+ +E E++++ H +LGNRW++IA LPGRTDN IKNHWN+ +++K+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 11 GLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLL--RCGKSCRLRWTNYLRPDLKRG 68
KK +T EED+ L + +G W+ + A R + CR RW NYL P +
Sbjct: 8 AAKKQKFTPEEDEMLKRAVAQHG-SDWKMI---AATFPNRNARQCRDRWKNYLAPSISHT 63
Query: 69 LLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNT 110
+ E+ +++ + G +W+ IA PGRTD IKN W T
Sbjct: 64 PWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 12 LKKGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLLRCGKSCRLRWTNYLRPD 64
L KGPWT EED++LI + G W + K L G R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 65 LKRGLLSEYEEKMVIDLHAQLG-NRWSKIASHLPGRTDNEIKNHWNTHI 112
L +G ++ E++ +I L + G RWS IA HL GR + + W+ H+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 12 LKKGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLLRCGKSCRLRWTNYLRPD 64
L KGPWT EED+++I + G W + K L G R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 65 LKRGLLSEYEEKMVIDLHAQLG-NRWSKIASHLPGRTDNEIKNHWNTHI 112
L +G ++ E++ VI+L + G RWS IA HL GR + + W+ H+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 12 LKKGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLLRCGKSCRLRWTNYLRPD 64
L KGPWT EED+++I + G W + K L G R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 65 LKRGLLSEYEEKMVIDLHAQLG-NRWSKIASHLPGRTDNEIKNHWNTHI 112
L +G ++ E++ VI L + G RWS IA HL GR + + W+ H+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 12 LKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLL--RCGKSCRLRWTNYLRPD 64
L K WT EED+KL + NG W+ + A L R C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVI---ANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 12 LKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLL--RCGKSCRLRWTNYLRPD 64
L K WT EED+KL + NG W+ + A L R C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVI---ANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 87 NRWSKIASHLPGRTDNEIKNHW 108
+RW K+A ++ GRT E+K H+
Sbjct: 44 DRWKKVAQYVKGRTPEEVKKHY 65
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 28.9 bits (63), Expect = 3.8, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 83 AQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPLT 125
A+ G RW+KI+ + RT ++K++ + K K+ K G+D T
Sbjct: 25 AKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV-KCGLDKET 66
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 28.5 bits (62), Expect = 4.7, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 14/60 (23%)
Query: 50 GKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNR-WSKIASHLPGRTDNEIKNHW 108
G S +++WT+ E++ + L Q G + W +ASH P RTD + + W
Sbjct: 4 GSSGKVKWTHE-------------EDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 17 WTAEEDKKLINFILTNGQCCWRAVPKLAGLL--RCGKSCRLRWTNYLRPDLKR 67
W ED+ L ++ G+ W ++A LL + K C+ RW +L P +K+
Sbjct: 12 WRNTEDEILKAAVMKYGKNQW---SRIASLLHRKSAKQCKARWYEWLDPSIKK 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,607,670
Number of Sequences: 62578
Number of extensions: 312047
Number of successful extensions: 729
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 37
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)