Query 021498
Match_columns 311
No_of_seqs 282 out of 1361
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 05:00:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 2.6E-34 8.8E-39 232.1 9.0 104 11-115 1-104 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 4.1E-34 1.4E-38 232.3 8.6 104 14-118 1-104 (107)
3 3zqc_A MYB3; transcription-DNA 100.0 9.8E-34 3.4E-38 237.7 10.2 110 14-124 2-111 (131)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 1.6E-33 5.3E-38 235.3 8.8 107 8-115 21-127 (128)
5 3osg_A MYB21; transcription-DN 100.0 2.8E-33 9.7E-38 233.6 9.4 105 8-114 5-109 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 3.4E-31 1.2E-35 228.6 7.2 107 8-115 52-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.6E-31 5.5E-36 230.7 4.9 112 11-123 3-115 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 1.3E-22 4.3E-27 169.2 5.0 83 40-123 1-84 (128)
9 2dim_A Cell division cycle 5-l 99.8 3.5E-22 1.2E-26 150.4 1.9 67 8-75 3-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 1.5E-18 5.2E-23 158.0 6.5 106 9-115 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 1.4E-18 4.9E-23 132.2 5.1 58 54-112 10-67 (73)
12 2cu7_A KIAA1915 protein; nucle 99.7 1.1E-17 3.8E-22 126.5 8.0 66 61-127 3-68 (72)
13 2din_A Cell division cycle 5-l 99.7 1E-17 3.5E-22 124.5 7.2 60 60-120 2-61 (66)
14 2dim_A Cell division cycle 5-l 99.7 1.7E-17 5.8E-22 124.7 6.0 64 62-125 4-68 (70)
15 2juh_A Telomere binding protei 99.7 8E-18 2.7E-22 139.5 2.9 84 8-91 11-103 (121)
16 2d9a_A B-MYB, MYB-related prot 99.7 1.2E-17 4.3E-22 121.7 3.3 57 9-66 3-59 (60)
17 2d9a_A B-MYB, MYB-related prot 99.7 4.4E-17 1.5E-21 118.8 5.0 55 62-116 3-58 (60)
18 1gvd_A MYB proto-oncogene prot 99.7 1.7E-17 5.8E-22 117.7 2.6 52 12-64 1-52 (52)
19 1guu_A C-MYB, MYB proto-oncoge 99.7 1.2E-16 4.1E-21 113.2 6.0 50 65-114 1-51 (52)
20 1ity_A TRF1; helix-turn-helix, 99.6 2.4E-16 8.3E-21 118.1 7.1 62 60-121 3-67 (69)
21 1guu_A C-MYB, MYB proto-oncoge 99.6 3.1E-17 1E-21 116.3 2.0 52 12-64 1-52 (52)
22 2roh_A RTBP1, telomere binding 99.6 7.8E-17 2.7E-21 133.7 4.7 80 9-88 26-114 (122)
23 1gvd_A MYB proto-oncogene prot 99.6 1.9E-16 6.4E-21 112.3 5.9 50 65-114 1-51 (52)
24 1ity_A TRF1; helix-turn-helix, 99.6 5.2E-17 1.8E-21 121.7 3.0 62 9-71 5-68 (69)
25 1x41_A Transcriptional adaptor 99.6 7.5E-16 2.6E-20 112.5 5.8 53 62-114 3-56 (60)
26 3sjm_A Telomeric repeat-bindin 99.6 1.6E-16 5.4E-21 117.9 1.8 56 11-66 8-64 (64)
27 1w0t_A Telomeric repeat bindin 99.6 1.2E-15 4E-20 108.7 6.2 49 66-114 1-52 (53)
28 1x41_A Transcriptional adaptor 99.6 3.6E-16 1.2E-20 114.2 3.1 56 9-65 3-58 (60)
29 2yum_A ZZZ3 protein, zinc fing 99.6 1.7E-15 5.6E-20 115.2 6.0 58 62-119 3-66 (75)
30 3sjm_A Telomeric repeat-bindin 99.6 2.8E-15 9.7E-20 111.1 6.0 52 65-116 9-63 (64)
31 2elk_A SPCC24B10.08C protein; 99.5 5.9E-15 2E-19 107.2 6.2 50 63-112 5-56 (58)
32 2yum_A ZZZ3 protein, zinc fing 99.5 8.8E-16 3E-20 116.7 1.7 61 8-69 2-67 (75)
33 2din_A Cell division cycle 5-l 99.5 6.4E-16 2.2E-20 114.8 0.4 59 8-69 3-61 (66)
34 1w0t_A Telomeric repeat bindin 99.5 1.2E-15 4.2E-20 108.6 1.8 49 13-62 1-51 (53)
35 2elk_A SPCC24B10.08C protein; 99.5 2.3E-15 7.7E-20 109.4 2.5 52 10-61 5-56 (58)
36 3osg_A MYB21; transcription-DN 99.5 1.6E-14 5.6E-19 119.9 5.9 63 62-124 6-68 (126)
37 2ltp_A Nuclear receptor corepr 99.2 1.8E-15 6E-20 119.1 0.0 56 60-115 9-64 (89)
38 1gv2_A C-MYB, MYB proto-oncoge 99.5 1.6E-14 5.6E-19 115.9 5.0 60 64-123 1-61 (105)
39 2cu7_A KIAA1915 protein; nucle 99.5 8.1E-15 2.8E-19 110.7 1.6 58 8-67 3-60 (72)
40 2k9n_A MYB24; R2R3 domain, DNA 99.4 6.1E-14 2.1E-18 113.3 4.9 58 67-124 1-59 (107)
41 2cqr_A RSGI RUH-043, DNAJ homo 99.4 1.1E-13 3.8E-18 105.2 5.8 51 63-113 14-68 (73)
42 3zqc_A MYB3; transcription-DNA 99.4 1.1E-13 3.8E-18 115.6 5.2 58 67-124 2-60 (131)
43 2llk_A Cyclin-D-binding MYB-li 99.4 6.4E-14 2.2E-18 106.5 3.2 62 3-68 12-73 (73)
44 2yus_A SWI/SNF-related matrix- 99.4 2.2E-13 7.5E-18 105.0 4.6 48 64-111 15-62 (79)
45 2yus_A SWI/SNF-related matrix- 99.4 2.9E-13 9.8E-18 104.4 3.6 52 7-60 11-62 (79)
46 2aje_A Telomere repeat-binding 99.3 2.7E-13 9.3E-18 109.8 3.3 80 8-87 7-95 (105)
47 2ckx_A NGTRF1, telomere bindin 99.3 5.4E-13 1.9E-17 103.8 4.3 69 15-84 1-79 (83)
48 1x58_A Hypothetical protein 49 99.3 2.6E-12 8.8E-17 94.3 6.2 49 66-114 7-58 (62)
49 2ckx_A NGTRF1, telomere bindin 99.3 3.1E-12 1.1E-16 99.5 6.6 48 68-115 1-53 (83)
50 2aje_A Telomere repeat-binding 99.3 4.5E-12 1.5E-16 102.6 7.5 53 62-114 8-65 (105)
51 2cjj_A Radialis; plant develop 99.3 5.1E-12 1.8E-16 100.2 7.0 59 66-124 7-70 (93)
52 2juh_A Telomere binding protei 99.3 2.4E-12 8.3E-17 106.6 5.3 56 60-115 10-70 (121)
53 2ltp_A Nuclear receptor corepr 98.9 4E-13 1.4E-17 105.6 0.0 54 8-63 10-63 (89)
54 2roh_A RTBP1, telomere binding 99.2 6E-12 2.1E-16 104.3 6.1 54 62-115 26-84 (122)
55 2cqr_A RSGI RUH-043, DNAJ homo 99.2 1.1E-12 3.7E-17 99.7 1.4 55 7-62 11-68 (73)
56 1ign_A Protein (RAP1); RAP1,ye 99.2 3.9E-12 1.3E-16 115.9 4.9 55 63-117 4-64 (246)
57 2eqr_A N-COR1, N-COR, nuclear 99.0 5.6E-10 1.9E-14 81.6 6.4 48 66-113 11-58 (61)
58 3hm5_A DNA methyltransferase 1 99.0 4.6E-10 1.6E-14 88.9 6.3 68 49-120 16-88 (93)
59 2cqq_A RSGI RUH-037, DNAJ homo 99.0 4.1E-10 1.4E-14 85.2 5.5 60 64-124 5-68 (72)
60 2cjj_A Radialis; plant develop 98.9 1.6E-10 5.4E-15 91.6 1.2 47 14-61 8-57 (93)
61 2eqr_A N-COR1, N-COR, nuclear 98.7 7.6E-09 2.6E-13 75.5 2.9 51 8-60 6-56 (61)
62 2iw5_B Protein corest, REST co 98.7 2.1E-08 7.2E-13 90.7 6.2 49 66-114 132-180 (235)
63 1x58_A Hypothetical protein 49 98.6 6.1E-09 2.1E-13 76.4 1.3 49 12-62 6-57 (62)
64 1wgx_A KIAA1903 protein; MYB D 98.6 5.7E-08 2E-12 73.6 5.4 47 67-113 8-58 (73)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.6 1.7E-08 5.9E-13 76.3 1.8 50 11-62 5-57 (72)
66 1fex_A TRF2-interacting telome 98.5 1E-07 3.5E-12 69.3 5.0 47 67-113 2-58 (59)
67 2xag_B REST corepressor 1; ami 98.5 8.8E-08 3E-12 95.3 5.0 46 68-113 381-426 (482)
68 1wgx_A KIAA1903 protein; MYB D 98.3 1.4E-07 4.8E-12 71.4 1.8 48 14-62 8-58 (73)
69 1fex_A TRF2-interacting telome 98.3 1.1E-07 3.6E-12 69.2 1.0 48 14-62 2-58 (59)
70 2iw5_B Protein corest, REST co 98.3 2.5E-07 8.7E-12 83.7 2.7 49 12-62 131-179 (235)
71 2yqk_A Arginine-glutamic acid 98.1 3.5E-06 1.2E-10 61.7 5.8 49 63-111 5-54 (63)
72 4eef_G F-HB80.4, designed hema 98.1 6.9E-07 2.4E-11 67.5 1.2 43 67-109 20-66 (74)
73 1ug2_A 2610100B20RIK gene prod 98.1 4.1E-06 1.4E-10 65.6 5.4 49 69-117 35-86 (95)
74 1ofc_X ISWI protein; nuclear p 98.1 6.4E-06 2.2E-10 77.8 7.4 100 15-116 111-277 (304)
75 2lr8_A CAsp8-associated protei 97.2 1.1E-06 3.8E-11 65.3 0.0 45 69-114 16-63 (70)
76 4iej_A DNA methyltransferase 1 97.9 3.9E-05 1.3E-09 60.5 7.4 60 56-119 23-87 (93)
77 4eef_G F-HB80.4, designed hema 97.8 3.4E-06 1.2E-10 63.7 0.7 44 14-58 20-66 (74)
78 2yqk_A Arginine-glutamic acid 97.8 1.3E-05 4.3E-10 58.8 2.9 50 8-59 3-53 (63)
79 4a69_C Nuclear receptor corepr 97.6 7.7E-05 2.6E-09 58.8 5.6 45 67-111 43-87 (94)
80 2crg_A Metastasis associated p 97.6 0.00014 4.9E-09 54.2 6.2 44 67-110 8-52 (70)
81 2xag_B REST corepressor 1; ami 97.5 3.1E-05 1.1E-09 77.1 2.5 47 12-60 378-424 (482)
82 2ebi_A DNA binding protein GT- 97.3 0.00018 6.2E-09 55.2 4.5 51 67-117 4-68 (86)
83 3hm5_A DNA methyltransferase 1 97.0 0.00018 6.2E-09 56.7 1.6 48 13-61 29-80 (93)
84 4a69_C Nuclear receptor corepr 96.9 0.00028 9.7E-09 55.6 2.1 43 14-58 43-85 (94)
85 2crg_A Metastasis associated p 96.9 0.00032 1.1E-08 52.3 2.0 45 13-59 7-52 (70)
86 2y9y_A Imitation switch protei 96.9 0.0018 6E-08 62.6 7.4 103 15-118 124-295 (374)
87 4b4c_A Chromodomain-helicase-D 96.6 0.0034 1.2E-07 55.3 6.8 45 69-113 136-195 (211)
88 1ug2_A 2610100B20RIK gene prod 96.5 0.0019 6.6E-08 50.5 3.7 44 15-59 34-79 (95)
89 2ebi_A DNA binding protein GT- 96.3 0.00047 1.6E-08 52.9 -0.6 49 13-61 3-63 (86)
90 2lr8_A CAsp8-associated protei 95.1 0.00098 3.4E-08 49.5 0.0 47 14-62 14-62 (70)
91 1irz_A ARR10-B; helix-turn-hel 94.4 0.13 4.4E-06 37.7 6.8 47 66-112 6-57 (64)
92 4b4c_A Chromodomain-helicase-D 94.2 0.037 1.3E-06 48.5 4.3 38 5-42 125-162 (211)
93 4iej_A DNA methyltransferase 1 93.1 0.034 1.1E-06 43.7 1.7 49 12-61 28-80 (93)
94 1ofc_X ISWI protein; nuclear p 92.8 0.2 6.7E-06 47.2 6.8 47 68-114 111-158 (304)
95 2xb0_X Chromo domain-containin 87.6 0.46 1.6E-05 43.9 4.2 28 15-42 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 84.1 0.53 1.8E-05 34.3 2.3 48 11-58 4-54 (64)
97 2xb0_X Chromo domain-containin 74.3 6.6 0.00023 36.1 6.9 47 67-113 3-54 (270)
98 2eqy_A RBP2 like, jumonji, at 67.5 22 0.00074 28.5 7.8 39 77-115 46-96 (122)
99 2o8x_A Probable RNA polymerase 65.1 10 0.00035 26.0 4.8 44 70-115 16-59 (70)
100 2li6_A SWI/SNF chromatin-remod 63.4 5.5 0.00019 31.7 3.4 38 78-115 54-99 (116)
101 2lm1_A Lysine-specific demethy 62.9 11 0.00039 29.2 5.2 40 77-116 48-99 (107)
102 2y9y_A Imitation switch protei 62.6 12 0.00041 36.0 6.2 46 68-114 124-171 (374)
103 2rq5_A Protein jumonji; develo 62.0 2.2 7.5E-05 34.7 0.8 56 25-83 47-113 (121)
104 2jrz_A Histone demethylase jar 62.0 9.9 0.00034 30.3 4.7 39 77-115 44-94 (117)
105 1ku3_A Sigma factor SIGA; heli 59.9 14 0.00048 26.0 4.8 45 70-116 11-59 (73)
106 1u78_A TC3 transposase, transp 58.8 52 0.0018 25.3 8.5 86 15-106 5-98 (141)
107 2cxy_A BAF250B subunit, HBAF25 57.8 13 0.00046 29.8 4.8 40 78-117 56-107 (125)
108 2li6_A SWI/SNF chromatin-remod 56.6 2.4 8.1E-05 33.9 0.1 39 24-63 53-98 (116)
109 2p7v_B Sigma-70, RNA polymeras 55.6 14 0.00047 25.7 4.1 40 75-115 10-53 (68)
110 1kkx_A Transcription regulator 53.0 10 0.00035 30.6 3.3 40 78-117 53-100 (123)
111 1ig6_A MRF-2, modulator recogn 52.8 3.8 0.00013 32.1 0.7 40 24-63 37-87 (107)
112 3hug_A RNA polymerase sigma fa 51.7 25 0.00085 25.9 5.2 40 74-114 41-80 (92)
113 2jxj_A Histone demethylase jar 48.7 9.3 0.00032 29.1 2.3 38 78-115 41-90 (96)
114 2jrz_A Histone demethylase jar 47.8 3.4 0.00012 33.0 -0.3 39 24-62 44-92 (117)
115 2rq5_A Protein jumonji; develo 47.6 21 0.00071 28.8 4.4 79 12-116 5-98 (121)
116 1c20_A DEAD ringer protein; DN 47.4 25 0.00087 28.2 4.9 41 77-117 56-109 (128)
117 1c20_A DEAD ringer protein; DN 45.1 3.7 0.00013 33.3 -0.5 40 24-63 56-106 (128)
118 1x3u_A Transcriptional regulat 44.6 41 0.0014 23.4 5.3 42 70-114 17-58 (79)
119 2kk0_A AT-rich interactive dom 43.5 26 0.00089 28.9 4.5 41 77-117 68-121 (145)
120 1lsh_B Lipovitellin (LV-2); vi 42.5 5.5 0.00019 37.5 0.2 11 243-253 45-55 (319)
121 1ig6_A MRF-2, modulator recogn 41.7 15 0.00053 28.5 2.7 38 77-114 37-87 (107)
122 2yqf_A Ankyrin-1; death domain 41.5 35 0.0012 26.6 4.7 34 71-105 14-47 (111)
123 3c57_A Two component transcrip 41.4 40 0.0014 25.1 4.9 44 69-115 27-70 (95)
124 2q1z_A RPOE, ECF SIGE; ECF sig 41.3 32 0.0011 27.8 4.7 31 85-116 150-180 (184)
125 2lm1_A Lysine-specific demethy 40.5 4.4 0.00015 31.6 -0.7 39 24-62 48-96 (107)
126 2cxy_A BAF250B subunit, HBAF25 39.9 7 0.00024 31.5 0.4 39 24-62 55-103 (125)
127 1je8_A Nitrate/nitrite respons 39.7 41 0.0014 24.3 4.7 43 69-114 21-63 (82)
128 1tty_A Sigma-A, RNA polymerase 39.7 43 0.0015 24.3 4.8 40 75-115 23-66 (87)
129 3i4p_A Transcriptional regulat 39.3 23 0.00079 29.0 3.5 44 73-117 3-47 (162)
130 1or7_A Sigma-24, RNA polymeras 38.9 55 0.0019 26.5 5.9 32 85-117 155-186 (194)
131 2eqy_A RBP2 like, jumonji, at 38.8 5.8 0.0002 31.9 -0.3 38 24-61 46-93 (122)
132 1fse_A GERE; helix-turn-helix 38.7 47 0.0016 22.7 4.7 44 68-114 10-53 (74)
133 2of5_A Death domain-containing 36.1 34 0.0012 27.1 3.9 39 63-105 15-53 (114)
134 2of5_H Leucine-rich repeat and 36.0 32 0.0011 27.2 3.7 30 75-105 13-42 (118)
135 2o71_A Death domain-containing 35.9 35 0.0012 27.0 4.0 36 65-104 17-52 (115)
136 3ulq_B Transcriptional regulat 35.7 67 0.0023 23.8 5.4 46 66-114 26-71 (90)
137 3cz6_A DNA-binding protein RAP 34.9 30 0.001 29.6 3.5 30 10-42 110-147 (168)
138 3e7l_A Transcriptional regulat 33.3 56 0.0019 22.4 4.3 34 72-106 18-51 (63)
139 1xsv_A Hypothetical UPF0122 pr 32.5 76 0.0026 24.5 5.4 40 74-114 29-68 (113)
140 2kk0_A AT-rich interactive dom 32.4 17 0.00059 30.0 1.6 40 24-63 68-118 (145)
141 2jpc_A SSRB; DNA binding prote 32.2 67 0.0023 21.1 4.5 38 75-114 3-40 (61)
142 1ntc_A Protein (nitrogen regul 31.1 71 0.0024 23.6 4.8 36 72-108 50-85 (91)
143 3cz6_A DNA-binding protein RAP 30.6 40 0.0014 28.8 3.6 17 63-79 110-126 (168)
144 3mzy_A RNA polymerase sigma-H 30.6 76 0.0026 24.5 5.2 29 85-114 123-151 (164)
145 2rnj_A Response regulator prot 30.6 52 0.0018 24.0 4.0 42 70-114 30-71 (91)
146 3i4p_A Transcriptional regulat 30.6 11 0.00039 30.9 0.2 42 20-63 3-44 (162)
147 2dbb_A Putative HTH-type trans 30.5 72 0.0025 25.3 5.1 44 73-117 9-53 (151)
148 1wxp_A THO complex subunit 1; 30.1 57 0.002 25.2 4.3 30 76-106 19-48 (110)
149 1rp3_A RNA polymerase sigma fa 28.3 98 0.0034 25.6 5.8 31 84-115 201-231 (239)
150 2e1c_A Putative HTH-type trans 27.3 62 0.0021 26.8 4.3 43 73-116 27-70 (171)
151 2jvw_A Uncharacterized protein 27.2 19 0.00065 27.6 0.9 45 22-79 18-69 (88)
152 2k27_A Paired box protein PAX- 25.0 2.5E+02 0.0087 22.1 8.2 78 14-96 23-111 (159)
153 2cyy_A Putative HTH-type trans 24.9 84 0.0029 25.0 4.5 43 73-116 7-50 (151)
154 1s7o_A Hypothetical UPF0122 pr 23.4 1.2E+02 0.0043 23.4 5.1 43 70-114 23-65 (113)
155 3k6g_A Telomeric repeat-bindin 23.1 60 0.0021 25.7 3.1 69 22-95 14-92 (111)
156 1p4w_A RCSB; solution structur 22.6 1.6E+02 0.0053 22.2 5.5 45 67-114 32-76 (99)
157 2lfw_A PHYR sigma-like domain; 21.2 1.1E+02 0.0038 24.3 4.6 43 74-117 97-139 (157)
158 1tc3_C Protein (TC3 transposas 20.4 1.5E+02 0.0051 17.7 5.2 38 69-108 5-42 (51)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=2.6e-34 Score=232.09 Aligned_cols=104 Identities=46% Similarity=0.908 Sum_probs=99.3
Q ss_pred CCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChh
Q 021498 11 GLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWS 90 (311)
Q Consensus 11 ~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~l~kg~WT~EED~~Ll~lv~~~G~kW~ 90 (311)
++++|+||+|||++|+++|++||..+|..||+.+++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 478999999999999999999998899999999986 9999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHH
Q 021498 91 KIASHLPGRTDNEIKNHWNTHIKKK 115 (311)
Q Consensus 91 kIA~~lpgRT~~qcr~Rw~~~l~~~ 115 (311)
+||++|||||+.||++||+.+++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999998875
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=4.1e-34 Score=232.25 Aligned_cols=104 Identities=32% Similarity=0.604 Sum_probs=100.3
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhh
Q 021498 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIA 93 (311)
Q Consensus 14 kg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~l~kg~WT~EED~~Ll~lv~~~G~kW~kIA 93 (311)
||+||+|||++|+++|.+||..+|..||..|++ |+++||++||.++|+|.+++|+||+|||.+|+++|.+||++|.+||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 689999999999999999998899999999986 9999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHhh
Q 021498 94 SHLPGRTDNEIKNHWNTHIKKKLRK 118 (311)
Q Consensus 94 ~~lpgRT~~qcr~Rw~~~l~~~~kk 118 (311)
++|||||++|||+||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999887654
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=9.8e-34 Score=237.74 Aligned_cols=110 Identities=35% Similarity=0.639 Sum_probs=104.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhh
Q 021498 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIA 93 (311)
Q Consensus 14 kg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~l~kg~WT~EED~~Ll~lv~~~G~kW~kIA 93 (311)
||+||+|||++|+++|.+||..+|..||..|++ |+++||++||.++|+|.+++|+||.|||++|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 799999999999999999999999999999986 9999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 021498 94 SHLPGRTDNEIKNHWNTHIKKKLRKMGIDPL 124 (311)
Q Consensus 94 ~~lpgRT~~qcr~Rw~~~l~~~~kk~~~~~~ 124 (311)
++|||||++|||+||+.++++.+........
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence 9999999999999999999998877655443
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1.6e-33 Score=235.35 Aligned_cols=107 Identities=44% Similarity=0.865 Sum_probs=102.4
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 021498 8 DKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGN 87 (311)
Q Consensus 8 ~K~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~l~kg~WT~EED~~Ll~lv~~~G~ 87 (311)
.+|++++|+||+|||++|+++|++||..+|..||+.+++ |++.||++||.++|+|.+++++||+|||++|+++|++||+
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 569999999999999999999999998899999999986 9999999999999999999999999999999999999999
Q ss_pred ChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021498 88 RWSKIASHLPGRTDNEIKNHWNTHIKKK 115 (311)
Q Consensus 88 kW~kIA~~lpgRT~~qcr~Rw~~~l~~~ 115 (311)
+|++||++|||||+.||++||+.+++++
T Consensus 100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 100 RWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998764
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=2.8e-33 Score=233.63 Aligned_cols=105 Identities=32% Similarity=0.599 Sum_probs=100.3
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 021498 8 DKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGN 87 (311)
Q Consensus 8 ~K~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~l~kg~WT~EED~~Ll~lv~~~G~ 87 (311)
.+++.++|+||+|||++|+++|.+||. +|..||+.+++ |+++|||+||.++|+|.+++++||+|||++|+++|++||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 357889999999999999999999996 99999999986 9999999999999999999999999999999999999999
Q ss_pred ChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021498 88 RWSKIASHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 88 kW~kIA~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
+|.+||+.|||||+.|||+||+.++++
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999988876
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=3.4e-31 Score=228.58 Aligned_cols=107 Identities=45% Similarity=0.867 Sum_probs=102.8
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 021498 8 DKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGN 87 (311)
Q Consensus 8 ~K~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~l~kg~WT~EED~~Ll~lv~~~G~ 87 (311)
..|++++|+||+|||++|+++|.+||..+|..||+.+++ |++.||+.||.++|+|.+++++||+|||.+|+++|++||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 568999999999999999999999998889999999986 9999999999999999999999999999999999999999
Q ss_pred ChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021498 88 RWSKIASHLPGRTDNEIKNHWNTHIKKK 115 (311)
Q Consensus 88 kW~kIA~~lpgRT~~qcr~Rw~~~l~~~ 115 (311)
+|++||++|||||+++|++||+.+++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998765
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.6e-31 Score=230.67 Aligned_cols=112 Identities=33% Similarity=0.657 Sum_probs=66.8
Q ss_pred CCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-Ch
Q 021498 11 GLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGN-RW 89 (311)
Q Consensus 11 ~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~l~kg~WT~EED~~Ll~lv~~~G~-kW 89 (311)
++++++||+|||++|+++|.+||..+|..||+.+++ |+++||++||.++|+|.+++++||+|||++|+++|++||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 467999999999999999999998899999999986 9999999999999999999999999999999999999996 69
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 021498 90 SKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDP 123 (311)
Q Consensus 90 ~kIA~~lpgRT~~qcr~Rw~~~l~~~~kk~~~~~ 123 (311)
.+||+.|||||+.||++||+++|.+.+++..|++
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~ 115 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 115 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCCh
Confidence 9999999999999999999999987766655543
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.86 E-value=1.3e-22 Score=169.19 Aligned_cols=83 Identities=29% Similarity=0.644 Sum_probs=57.1
Q ss_pred hhhhhcccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-ChhhhhhcCCCCCHHHHHHHHHHHHHHHHhh
Q 021498 40 VPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGN-RWSKIASHLPGRTDNEIKNHWNTHIKKKLRK 118 (311)
Q Consensus 40 IA~~~~~~Rt~~QCr~Rw~n~L~p~l~kg~WT~EED~~Ll~lv~~~G~-kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~kk 118 (311)
||+.+++ |++.||++||.++|+|.+++|+||+|||++|+++|++||. +|.+||..|+|||+.||++||+++|.+.+++
T Consensus 1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 7888886 9999999999999999999999999999999999999996 6999999999999999999999999887766
Q ss_pred cCCCC
Q 021498 119 MGIDP 123 (311)
Q Consensus 119 ~~~~~ 123 (311)
+.|++
T Consensus 80 ~~WT~ 84 (128)
T 1h8a_C 80 TSWTE 84 (128)
T ss_dssp SCCCH
T ss_pred ccCCH
Confidence 65544
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.5e-22 Score=150.38 Aligned_cols=67 Identities=25% Similarity=0.511 Sum_probs=64.1
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCCCCCCCCCCHHHH
Q 021498 8 DKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEE 75 (311)
Q Consensus 8 ~K~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~l~kg~WT~EED 75 (311)
..+++++|+||+|||++|+++|.+||..+|..||+.|++ |+++|||+||+++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 457899999999999999999999998899999999996 9999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.74 E-value=1.5e-18 Score=157.97 Aligned_cols=106 Identities=17% Similarity=0.249 Sum_probs=91.9
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHcCCCC-----cchhhhhhcccccccccccccccccCCCCC-----------------
Q 021498 9 KVGLKKGPWTAEEDKKLINFILTNGQCC-----WRAVPKLAGLLRCGKSCRLRWTNYLRPDLK----------------- 66 (311)
Q Consensus 9 K~~lkkg~WT~EED~~L~~lV~k~G~~n-----W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~l~----------------- 66 (311)
.+.+++++||+|||++|+++|.++|... |.+||+.|++ ||+.|||.||+++|.+.++
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 3567899999999999999999998542 9999999997 9999999999999999996
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 021498 67 ------------RGLLSEYEEKMVIDLHAQ-L--------------------------------GN-------------- 87 (311)
Q Consensus 67 ------------kg~WT~EED~~Ll~lv~~-~--------------------------------G~-------------- 87 (311)
+..||.+||..|+..+.+ | |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 889999999999999887 1 11
Q ss_pred -----------ChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021498 88 -----------RWSKIASHLPGRTDNEIKNHWNTHIKKK 115 (311)
Q Consensus 88 -----------kW~kIA~~lpgRT~~qcr~Rw~~~l~~~ 115 (311)
.|.+||+.+|+||.+++|+||+..++..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999988764
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-18 Score=132.23 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=47.3
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHH
Q 021498 54 RLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHI 112 (311)
Q Consensus 54 r~Rw~n~L~p~l~kg~WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l 112 (311)
.-||.++|+|++++++||+|||++|+++|++||++|++||+.| |||++|||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999999 999999999998654
No 12
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.72 E-value=1.1e-17 Score=126.52 Aligned_cols=66 Identities=23% Similarity=0.247 Sum_probs=60.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 021498 61 LRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPLTHK 127 (311)
Q Consensus 61 L~p~l~kg~WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~kk~~~~~~~~k 127 (311)
++|.+++++||+|||++|+++|++||++|.+||++|+|||+.|||+||+.++++..++ |+.+....
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~s 68 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETPN 68 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCSC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCccc
Confidence 5789999999999999999999999999999999999999999999999999998777 66665443
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=124.52 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=57.5
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHhhcC
Q 021498 60 YLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMG 120 (311)
Q Consensus 60 ~L~p~l~kg~WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~kk~~ 120 (311)
+|+|.+++++||+|||++|+++|++||++|.+||+ ++|||+.|||+||+.+|++.+++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999988754
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-17 Score=124.69 Aligned_cols=64 Identities=22% Similarity=0.407 Sum_probs=60.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q 021498 62 RPDLKRGLLSEYEEKMVIDLHAQLG-NRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPLT 125 (311)
Q Consensus 62 ~p~l~kg~WT~EED~~Ll~lv~~~G-~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~kk~~~~~~~ 125 (311)
.|.+++++||+|||++|+++|++|| ++|.+||++|+|||+.|||+||+++|++.+++..|++.+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eE 68 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS 68 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHh
Confidence 4678999999999999999999999 799999999999999999999999999999999887654
No 15
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.68 E-value=8e-18 Score=139.49 Aligned_cols=84 Identities=20% Similarity=0.251 Sum_probs=77.1
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhc---ccccccccccccccccC-----CCCCCC-CCCHHHHHHH
Q 021498 8 DKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAG---LLRCGKSCRLRWTNYLR-----PDLKRG-LLSEYEEKMV 78 (311)
Q Consensus 8 ~K~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~---~~Rt~~QCr~Rw~n~L~-----p~l~kg-~WT~EED~~L 78 (311)
.++..++++||+|||+.|+++|++||.++|..|++.+. .+||+.||++||+++|+ |.++++ +|+++|+.+|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 35677899999999999999999999889999999751 24999999999999998 999999 8999999999
Q ss_pred HHHHHHhCCChhh
Q 021498 79 IDLHAQLGNRWSK 91 (311)
Q Consensus 79 l~lv~~~G~kW~k 91 (311)
++++..||++|.+
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999987
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=1.2e-17 Score=121.73 Aligned_cols=57 Identities=26% Similarity=0.422 Sum_probs=54.0
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCCCCC
Q 021498 9 KVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLK 66 (311)
Q Consensus 9 K~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~l~ 66 (311)
.|++++++||+|||++|+++|.+||..+|..||+.+++ |++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence 47899999999999999999999998899999999986 9999999999999999875
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=4.4e-17 Score=118.83 Aligned_cols=55 Identities=24% Similarity=0.404 Sum_probs=51.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 021498 62 RPDLKRGLLSEYEEKMVIDLHAQLG-NRWSKIASHLPGRTDNEIKNHWNTHIKKKL 116 (311)
Q Consensus 62 ~p~l~kg~WT~EED~~Ll~lv~~~G-~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~ 116 (311)
+|.+++++||+|||++|+++|.+|| ++|.+||++|+|||+.|||+||+++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5788999999999999999999999 699999999999999999999999998754
No 18
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.66 E-value=1.7e-17 Score=117.69 Aligned_cols=52 Identities=46% Similarity=0.884 Sum_probs=49.3
Q ss_pred CccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCCC
Q 021498 12 LKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPD 64 (311)
Q Consensus 12 lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~ 64 (311)
+++|+||+|||++|+++|.+||..+|..||+.+++ |+++|||+||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57999999999999999999998899999999986 99999999999999984
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.65 E-value=1.2e-16 Score=113.16 Aligned_cols=50 Identities=28% Similarity=0.500 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021498 65 LKRGLLSEYEEKMVIDLHAQLGN-RWSKIASHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 65 l~kg~WT~EED~~Ll~lv~~~G~-kW~kIA~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
+++++||+|||++|+++|++||. +|.+||+.|+|||+.|||+||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998 899999999999999999999999875
No 20
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.64 E-value=2.4e-16 Score=118.12 Aligned_cols=62 Identities=29% Similarity=0.282 Sum_probs=56.4
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCC--CCCHHHHHHHHHHHHHHHHhhcCC
Q 021498 60 YLRPDLKRGLLSEYEEKMVIDLHAQLG-NRWSKIASHLP--GRTDNEIKNHWNTHIKKKLRKMGI 121 (311)
Q Consensus 60 ~L~p~l~kg~WT~EED~~Ll~lv~~~G-~kW~kIA~~lp--gRT~~qcr~Rw~~~l~~~~kk~~~ 121 (311)
...+..++++||+|||++|+++|++|| ++|.+||+.|+ |||+.|||+||+++|++.+.+...
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 346778899999999999999999999 69999999999 999999999999999998876554
No 21
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.64 E-value=3.1e-17 Score=116.26 Aligned_cols=52 Identities=35% Similarity=0.693 Sum_probs=48.0
Q ss_pred CccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCCC
Q 021498 12 LKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPD 64 (311)
Q Consensus 12 lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~ 64 (311)
+++++||+|||++|+++|.+||..+|..||+.+++ |++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57899999999999999999997799999999986 99999999999999984
No 22
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.64 E-value=7.8e-17 Score=133.73 Aligned_cols=80 Identities=21% Similarity=0.228 Sum_probs=72.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhc---cccccccccccccccc-----CCCCCCCCCCHHH-HHHHH
Q 021498 9 KVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAG---LLRCGKSCRLRWTNYL-----RPDLKRGLLSEYE-EKMVI 79 (311)
Q Consensus 9 K~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~---~~Rt~~QCr~Rw~n~L-----~p~l~kg~WT~EE-D~~Ll 79 (311)
+...++++||+|||+.|+++|++||.++|..|++... .+||+.||++||++++ +|.++++.|+++| +.+|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 3456789999999999999999999889999998642 3499999999999999 8999999999999 89999
Q ss_pred HHHHHhCCC
Q 021498 80 DLHAQLGNR 88 (311)
Q Consensus 80 ~lv~~~G~k 88 (311)
+++..||++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999975
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.64 E-value=1.9e-16 Score=112.27 Aligned_cols=50 Identities=34% Similarity=0.708 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021498 65 LKRGLLSEYEEKMVIDLHAQLGN-RWSKIASHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 65 l~kg~WT~EED~~Ll~lv~~~G~-kW~kIA~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
+++++||+|||++|+++|.+||. +|.+||+.|+|||+.|||+||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999999875
No 24
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.64 E-value=5.2e-17 Score=121.75 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=57.4
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhc--ccccccccccccccccCCCCCCCCCC
Q 021498 9 KVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAG--LLRCGKSCRLRWTNYLRPDLKRGLLS 71 (311)
Q Consensus 9 K~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~--~~Rt~~QCr~Rw~n~L~p~l~kg~WT 71 (311)
++..++++||+|||++|+++|.+||.++|..||+.++ + |++.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence 4677899999999999999999999889999999998 6 999999999999999999988753
No 25
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=7.5e-16 Score=112.53 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=49.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021498 62 RPDLKRGLLSEYEEKMVIDLHAQLG-NRWSKIASHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 62 ~p~l~kg~WT~EED~~Ll~lv~~~G-~kW~kIA~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
.+.+.+++||+|||++|+++|++|| ++|.+||++|+|||+.|||+||+++|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3678899999999999999999999 7999999999999999999999988764
No 26
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.60 E-value=1.6e-16 Score=117.94 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=49.5
Q ss_pred CCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhc-ccccccccccccccccCCCCC
Q 021498 11 GLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAG-LLRCGKSCRLRWTNYLRPDLK 66 (311)
Q Consensus 11 ~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~-~~Rt~~QCr~Rw~n~L~p~l~ 66 (311)
..++++||+|||++|+++|.+||.++|..||+.++ .+|++.||++||+++++|+++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 35789999999999999999999989999999865 239999999999999998874
No 27
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.60 E-value=1.2e-15 Score=108.72 Aligned_cols=49 Identities=33% Similarity=0.396 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCC--CCCHHHHHHHHHHHHHH
Q 021498 66 KRGLLSEYEEKMVIDLHAQLG-NRWSKIASHLP--GRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 66 ~kg~WT~EED~~Ll~lv~~~G-~kW~kIA~~lp--gRT~~qcr~Rw~~~l~~ 114 (311)
++++||+|||++|+++|++|| ++|.+||..|+ |||+.|||+||+++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999999874
No 28
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=3.6e-16 Score=114.21 Aligned_cols=56 Identities=18% Similarity=0.388 Sum_probs=52.0
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCCCC
Q 021498 9 KVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDL 65 (311)
Q Consensus 9 K~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~l 65 (311)
.+.+++++||+|||++|+++|.+||..+|..||+.+++ |++.|||+||.++|.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCCC
Confidence 36789999999999999999999998899999999997 999999999999998753
No 29
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=115.15 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=53.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CChhhhhhcCCCCCHHHHHHHHHHHHHHHHhhc
Q 021498 62 RPDLKRGLLSEYEEKMVIDLHAQLG------NRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKM 119 (311)
Q Consensus 62 ~p~l~kg~WT~EED~~Ll~lv~~~G------~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~kk~ 119 (311)
+|.+++++||+|||++|+++|.+|| .+|.+||++|+|||+.|||+||+++|.+.++++
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 4788999999999999999999999 689999999999999999999999998876654
No 30
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.56 E-value=2.8e-15 Score=111.14 Aligned_cols=52 Identities=25% Similarity=0.404 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCC--CCCHHHHHHHHHHHHHHHH
Q 021498 65 LKRGLLSEYEEKMVIDLHAQLG-NRWSKIASHLP--GRTDNEIKNHWNTHIKKKL 116 (311)
Q Consensus 65 l~kg~WT~EED~~Ll~lv~~~G-~kW~kIA~~lp--gRT~~qcr~Rw~~~l~~~~ 116 (311)
.++++||+|||++|+++|++|| .+|.+||+.++ |||+.|||+||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4688999999999999999999 58999999865 9999999999999988643
No 31
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.55 E-value=5.9e-15 Score=107.16 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=46.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCC-CCCHHHHHHHHHHHH
Q 021498 63 PDLKRGLLSEYEEKMVIDLHAQLG-NRWSKIASHLP-GRTDNEIKNHWNTHI 112 (311)
Q Consensus 63 p~l~kg~WT~EED~~Ll~lv~~~G-~kW~kIA~~lp-gRT~~qcr~Rw~~~l 112 (311)
..+.+++||+|||++|+++|++|| ++|.+||++|+ |||+.|||+||++++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999 89999999999 999999999998764
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=8.8e-16 Score=116.67 Aligned_cols=61 Identities=23% Similarity=0.345 Sum_probs=56.3
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHcCC-----CCcchhhhhhcccccccccccccccccCCCCCCCC
Q 021498 8 DKVGLKKGPWTAEEDKKLINFILTNGQ-----CCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGL 69 (311)
Q Consensus 8 ~K~~lkkg~WT~EED~~L~~lV~k~G~-----~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~l~kg~ 69 (311)
.+|++++++||+|||++|+++|.+||. .+|..||+.|++ ||+.||+.||++||.+.++.|.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999999996 789999999997 9999999999999998777664
No 33
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=6.4e-16 Score=114.77 Aligned_cols=59 Identities=22% Similarity=0.335 Sum_probs=53.6
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCCCCCCCC
Q 021498 8 DKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGL 69 (311)
Q Consensus 8 ~K~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~l~kg~ 69 (311)
..|.+++++||+|||++|+++|+.||. +|..||+ +++ ||+.|||.||.++|+|.++++.
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCCC
Confidence 578999999999999999999999995 9999999 665 9999999999999998876653
No 34
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.54 E-value=1.2e-15 Score=108.59 Aligned_cols=49 Identities=24% Similarity=0.370 Sum_probs=46.3
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhc--ccccccccccccccccC
Q 021498 13 KKGPWTAEEDKKLINFILTNGQCCWRAVPKLAG--LLRCGKSCRLRWTNYLR 62 (311)
Q Consensus 13 kkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~--~~Rt~~QCr~Rw~n~L~ 62 (311)
++++||+|||++|+++|.+||.++|..||+.++ + |++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence 589999999999999999999889999999998 6 999999999999875
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.52 E-value=2.3e-15 Score=109.37 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=47.3
Q ss_pred CCCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhccccccccccccccccc
Q 021498 10 VGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 (311)
Q Consensus 10 ~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L 61 (311)
..+.+++||+|||++|+++|++||..+|..||+.|+++||++|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3466899999999999999999999999999999993499999999999875
No 36
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.50 E-value=1.6e-14 Score=119.93 Aligned_cols=63 Identities=19% Similarity=0.374 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 021498 62 RPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPL 124 (311)
Q Consensus 62 ~p~l~kg~WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~kk~~~~~~ 124 (311)
.+..++|+||+|||++|+++|++||.+|.+||+.|+|||+.||+.||+++|.+.++++.|++.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~e 68 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAE 68 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHH
Confidence 456889999999999999999999999999999999999999999999999988877766544
No 37
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.24 E-value=1.8e-15 Score=119.10 Aligned_cols=56 Identities=23% Similarity=0.179 Sum_probs=53.1
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021498 60 YLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKK 115 (311)
Q Consensus 60 ~L~p~l~kg~WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~ 115 (311)
.+.|.+++|+||.|||++|+++|.+||++|..||.+|+|||+.|||+||++++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56789999999999999999999999999999999999999999999999988764
No 38
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.49 E-value=1.6e-14 Score=115.86 Aligned_cols=60 Identities=32% Similarity=0.650 Sum_probs=53.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-ChhhhhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 021498 64 DLKRGLLSEYEEKMVIDLHAQLGN-RWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDP 123 (311)
Q Consensus 64 ~l~kg~WT~EED~~Ll~lv~~~G~-kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~kk~~~~~ 123 (311)
++++|+||+|||++|+++|++||. +|.+||+.|+|||+.||+.||.++|.+.++++.|++
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~ 61 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCH
Confidence 368999999999999999999996 699999999999999999999999987766655543
No 39
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.47 E-value=8.1e-15 Score=110.72 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=53.4
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCCCCCC
Q 021498 8 DKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKR 67 (311)
Q Consensus 8 ~K~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~l~k 67 (311)
..|.+++++||+|||++|+++|.+||. +|..||+.+++ ||+.||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999999995 99999999997 99999999999999876665
No 40
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.44 E-value=6.1e-14 Score=113.27 Aligned_cols=58 Identities=22% Similarity=0.398 Sum_probs=52.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChhhhhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 021498 67 RGLLSEYEEKMVIDLHAQLGN-RWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPL 124 (311)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~-kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~kk~~~~~~ 124 (311)
+|+||+|||++|+++|.+||. +|.+||..|+|||+.||+.||.++|.+.++++.|++.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~e 59 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPE 59 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHH
Confidence 589999999999999999996 7999999999999999999999999987777666543
No 41
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.43 E-value=1.1e-13 Score=105.19 Aligned_cols=51 Identities=14% Similarity=0.270 Sum_probs=47.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CChhhhhhcCCCCCHHHHHHHHHHHHH
Q 021498 63 PDLKRGLLSEYEEKMVIDLHAQLG----NRWSKIASHLPGRTDNEIKNHWNTHIK 113 (311)
Q Consensus 63 p~l~kg~WT~EED~~Ll~lv~~~G----~kW~kIA~~lpgRT~~qcr~Rw~~~l~ 113 (311)
+.+.+++||.+||++|++++++|| ++|.+||++|||||.+|||+||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999999 689999999999999999999998865
No 42
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.42 E-value=1.1e-13 Score=115.58 Aligned_cols=58 Identities=24% Similarity=0.581 Sum_probs=53.5
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 021498 67 RGLLSEYEEKMVIDLHAQLG-NRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPL 124 (311)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G-~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~kk~~~~~~ 124 (311)
+|+||+|||++|+++|.+|| .+|..||..|||||+.||+.||.++|.+.++++.|++.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~e 60 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHH
Confidence 78999999999999999999 67999999999999999999999999988887776554
No 43
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.41 E-value=6.4e-14 Score=106.49 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=48.6
Q ss_pred CCccccCCCCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCCCCCCC
Q 021498 3 RQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRG 68 (311)
Q Consensus 3 R~~~~~K~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~l~kg 68 (311)
|......|++++|+||+|||++|+++|.+|| ..|..||+.+ + ||+.||+.||. .|....+.|
T Consensus 12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l-g-Rt~~q~knRw~-~L~~~~~~G 73 (73)
T 2llk_A 12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL-G-RSASSVKDRCR-LMKDTCNTG 73 (73)
T ss_dssp -------CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH-T-SCHHHHHHHHH-HCSCCCSCC
T ss_pred ceeeecCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh-C-CCHHHHHHHHH-HHHHHccCC
Confidence 4445578999999999999999999999999 4699999999 5 99999999998 465555443
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.38 E-value=2.2e-13 Score=104.99 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHH
Q 021498 64 DLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTH 111 (311)
Q Consensus 64 ~l~kg~WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~ 111 (311)
...+++||+|||++|+++|++||.+|.+||++|+|||+.||++||+.+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999755
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.35 E-value=2.9e-13 Score=104.36 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=48.1
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccc
Q 021498 7 CDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60 (311)
Q Consensus 7 ~~K~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~ 60 (311)
+.+....+++||+|||++|+++|++|| .+|.+||++|++ ||+.||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 355667789999999999999999999 899999999997 9999999999998
No 46
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.35 E-value=2.7e-13 Score=109.78 Aligned_cols=80 Identities=21% Similarity=0.264 Sum_probs=67.9
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhc---cccccccccccccccc-----CCCCCCCCCCHHHHHH-H
Q 021498 8 DKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAG---LLRCGKSCRLRWTNYL-----RPDLKRGLLSEYEEKM-V 78 (311)
Q Consensus 8 ~K~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~---~~Rt~~QCr~Rw~n~L-----~p~l~kg~WT~EED~~-L 78 (311)
.+...++++||+|||+.|+++|++||.++|..|++.+. .+||+.+|++||++++ +|.+++|.-+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 45677899999999999999999999889999998652 2499999999999998 6999999888877666 8
Q ss_pred HHHHHHhCC
Q 021498 79 IDLHAQLGN 87 (311)
Q Consensus 79 l~lv~~~G~ 87 (311)
+++...+|+
T Consensus 87 ~~~~~~~~~ 95 (105)
T 2aje_A 87 LNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877664
No 47
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.34 E-value=5.4e-13 Score=103.75 Aligned_cols=69 Identities=23% Similarity=0.368 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCcchhhhh----hccccccccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 021498 15 GPWTAEEDKKLINFILTNGQCCWRAVPKL----AGLLRCGKSCRLRWTNYL-----RPDLKRG-LLSEYEEKMVIDLHAQ 84 (311)
Q Consensus 15 g~WT~EED~~L~~lV~k~G~~nW~~IA~~----~~~~Rt~~QCr~Rw~n~L-----~p~l~kg-~WT~EED~~Ll~lv~~ 84 (311)
++||+|||+.|+++|++||.++|..|++. +++ ||+.||++||+++| +|.+++| +...+...+++.+.+.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999998899999985 554 99999999999988 6776666 4778888888888765
No 48
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.31 E-value=2.6e-12 Score=94.34 Aligned_cols=49 Identities=18% Similarity=0.347 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhhhh---hcCCCCCHHHHHHHHHHHHHH
Q 021498 66 KRGLLSEYEEKMVIDLHAQLGNRWSKIA---SHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 66 ~kg~WT~EED~~Ll~lv~~~G~kW~kIA---~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
++.+||+|||+.|+++|++||.+|..|+ .+++|||..++++||+++.++
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6789999999999999999999999999 577999999999999998875
No 49
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.30 E-value=3.1e-12 Score=99.45 Aligned_cols=48 Identities=23% Similarity=0.461 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHHhCC-Chhhhhhc----CCCCCHHHHHHHHHHHHHHH
Q 021498 68 GLLSEYEEKMVIDLHAQLGN-RWSKIASH----LPGRTDNEIKNHWNTHIKKK 115 (311)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~-kW~kIA~~----lpgRT~~qcr~Rw~~~l~~~ 115 (311)
++||.|||+.|+++|++||. +|++|++. |+|||+++||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999997 99999995 89999999999999999754
No 50
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.30 E-value=4.5e-12 Score=102.61 Aligned_cols=53 Identities=23% Similarity=0.388 Sum_probs=48.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-ChhhhhhcC----CCCCHHHHHHHHHHHHHH
Q 021498 62 RPDLKRGLLSEYEEKMVIDLHAQLGN-RWSKIASHL----PGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 62 ~p~l~kg~WT~EED~~Ll~lv~~~G~-kW~kIA~~l----pgRT~~qcr~Rw~~~l~~ 114 (311)
.+..++++||.|||+.|+++|++||. +|++|++.+ +|||+.+||+||+++++.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34568899999999999999999997 999999965 899999999999999975
No 51
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.28 E-value=5.1e-12 Score=100.21 Aligned_cols=59 Identities=25% Similarity=0.400 Sum_probs=50.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CChhhhhhcCCCCCHHHHHHHHHHHHHHH-HhhcCCCCC
Q 021498 66 KRGLLSEYEEKMVIDLHAQLG----NRWSKIASHLPGRTDNEIKNHWNTHIKKK-LRKMGIDPL 124 (311)
Q Consensus 66 ~kg~WT~EED~~Ll~lv~~~G----~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~-~kk~~~~~~ 124 (311)
.+++||.|||++|++++++|| ++|.+||++|||||.+||++||+.++... ..+.|..|+
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~ 70 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 467899999999999999996 67999999999999999999999988764 344565554
No 52
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.28 E-value=2.4e-12 Score=106.58 Aligned_cols=56 Identities=23% Similarity=0.401 Sum_probs=50.8
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCC-Chhhhhhc----CCCCCHHHHHHHHHHHHHHH
Q 021498 60 YLRPDLKRGLLSEYEEKMVIDLHAQLGN-RWSKIASH----LPGRTDNEIKNHWNTHIKKK 115 (311)
Q Consensus 60 ~L~p~l~kg~WT~EED~~Ll~lv~~~G~-kW~kIA~~----lpgRT~~qcr~Rw~~~l~~~ 115 (311)
-+.+..++++||.|||+.|+++|++||. +|++|++. |+|||+++||+||+++++..
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 3566788999999999999999999997 99999998 48999999999999999853
No 53
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.93 E-value=4e-13 Score=105.63 Aligned_cols=54 Identities=24% Similarity=0.458 Sum_probs=50.1
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCC
Q 021498 8 DKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRP 63 (311)
Q Consensus 8 ~K~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p 63 (311)
..|++++|+||+|||++|+++|.+||. +|..||+.+++ ||+.||+.||.++|..
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR 63 (89)
Confidence 568899999999999999999999995 89999999996 9999999999998864
No 54
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.25 E-value=6e-12 Score=104.35 Aligned_cols=54 Identities=20% Similarity=0.428 Sum_probs=48.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-Chhhhhhc----CCCCCHHHHHHHHHHHHHHH
Q 021498 62 RPDLKRGLLSEYEEKMVIDLHAQLGN-RWSKIASH----LPGRTDNEIKNHWNTHIKKK 115 (311)
Q Consensus 62 ~p~l~kg~WT~EED~~Ll~lv~~~G~-kW~kIA~~----lpgRT~~qcr~Rw~~~l~~~ 115 (311)
....++++||.|||+.|+++|++||. +|++|++. ++|||+.|||+||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34457899999999999999999996 99999996 38999999999999999754
No 55
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.25 E-value=1.1e-12 Score=99.72 Aligned_cols=55 Identities=16% Similarity=0.391 Sum_probs=49.6
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHHcC---CCCcchhhhhhcccccccccccccccccC
Q 021498 7 CDKVGLKKGPWTAEEDKKLINFILTNG---QCCWRAVPKLAGLLRCGKSCRLRWTNYLR 62 (311)
Q Consensus 7 ~~K~~lkkg~WT~EED~~L~~lV~k~G---~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~ 62 (311)
-.++...+++||++||++|+++|.+|| ..+|.+||+.|++ ||..||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 466778899999999999999999999 3689999999996 999999999998654
No 56
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.24 E-value=3.9e-12 Score=115.92 Aligned_cols=55 Identities=20% Similarity=0.495 Sum_probs=48.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC------hhhhhhcCCCCCHHHHHHHHHHHHHHHHh
Q 021498 63 PDLKRGLLSEYEEKMVIDLHAQLGNR------WSKIASHLPGRTDNEIKNHWNTHIKKKLR 117 (311)
Q Consensus 63 p~l~kg~WT~EED~~Ll~lv~~~G~k------W~kIA~~lpgRT~~qcr~Rw~~~l~~~~k 117 (311)
+.+++++||+|||++|+++|++||++ |.+||++|||||++|||+||+.+|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35788999999999999999999975 99999999999999999999999999765
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=5.6e-10 Score=81.61 Aligned_cols=48 Identities=17% Similarity=0.107 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHH
Q 021498 66 KRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIK 113 (311)
Q Consensus 66 ~kg~WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~ 113 (311)
..++||++|++++++++.+||.+|.+||..|||||..||+.+|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999999999986543
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.00 E-value=4.6e-10 Score=88.87 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=61.3
Q ss_pred cccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhcC-----CCCCHHHHHHHHHHHHHHHHhhcC
Q 021498 49 CGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHL-----PGRTDNEIKNHWNTHIKKKLRKMG 120 (311)
Q Consensus 49 t~~QCr~Rw~n~L~p~l~kg~WT~EED~~Ll~lv~~~G~kW~kIA~~l-----pgRT~~qcr~Rw~~~l~~~~kk~~ 120 (311)
...=+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..++|+||+.+.++.++..+
T Consensus 16 i~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 16 VPVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345678999999976 89999999999999999999999999998 589999999999999998877654
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.99 E-value=4.1e-10 Score=85.19 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=49.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CChhhhhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 021498 64 DLKRGLLSEYEEKMVIDLHAQLG----NRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPL 124 (311)
Q Consensus 64 ~l~kg~WT~EED~~Ll~lv~~~G----~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~kk~~~~~~ 124 (311)
..+.+.||.||+++|.+++++|+ .+|.+||.+| |||..+|++||+.+........|..|+
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~vp~ 68 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPGMVSG 68 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSCCCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCCCCCC
Confidence 34677899999999999999997 5799999998 999999999999987764444444443
No 60
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.93 E-value=1.6e-10 Score=91.63 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=43.2
Q ss_pred cCCCCHHHHHHHHHHHHHcC---CCCcchhhhhhccccccccccccccccc
Q 021498 14 KGPWTAEEDKKLINFILTNG---QCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 (311)
Q Consensus 14 kg~WT~EED~~L~~lV~k~G---~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L 61 (311)
+++||+|||++|++++.+|| ...|.+||+.+++ ||..||+.||.+++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV 57 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 67899999999999999998 4679999999997 99999999999864
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=7.6e-09 Score=75.54 Aligned_cols=51 Identities=10% Similarity=0.097 Sum_probs=44.7
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccc
Q 021498 8 DKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60 (311)
Q Consensus 8 ~K~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~ 60 (311)
++.....++||+||++++.+++.+|| .+|..||..+++ |+..||+.+|...
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~-rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLER-KSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTT-SCHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 33445678999999999999999999 799999999997 9999999998654
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.67 E-value=2.1e-08 Score=90.70 Aligned_cols=49 Identities=10% Similarity=0.207 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021498 66 KRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 66 ~kg~WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
..++||+||.+++++++.+||++|.+||+.|++||..|||++|+...++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999987765
No 63
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.63 E-value=6.1e-09 Score=76.40 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=42.9
Q ss_pred CccCCCCHHHHHHHHHHHHHcCCCCcchhhh---hhcccccccccccccccccC
Q 021498 12 LKKGPWTAEEDKKLINFILTNGQCCWRAVPK---LAGLLRCGKSCRLRWTNYLR 62 (311)
Q Consensus 12 lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~---~~~~~Rt~~QCr~Rw~n~L~ 62 (311)
.++++||+|||+.|+++|++||. +|..|+. ++.+ ||....++||++...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence 36889999999999999999996 9999994 5554 999999999998654
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.58 E-value=5.7e-08 Score=73.59 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----ChhhhhhcCCCCCHHHHHHHHHHHHH
Q 021498 67 RGLLSEYEEKMVIDLHAQLGN----RWSKIASHLPGRTDNEIKNHWNTHIK 113 (311)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~----kW~kIA~~lpgRT~~qcr~Rw~~~l~ 113 (311)
...||.+|+++|.++...|+. +|.+||..|+|||..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 457999999999999999984 69999999999999999999998744
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.55 E-value=1.7e-08 Score=76.25 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=43.6
Q ss_pred CCccCCCCHHHHHHHHHHHHHcCC---CCcchhhhhhcccccccccccccccccC
Q 021498 11 GLKKGPWTAEEDKKLINFILTNGQ---CCWRAVPKLAGLLRCGKSCRLRWTNYLR 62 (311)
Q Consensus 11 ~lkkg~WT~EED~~L~~lV~k~G~---~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~ 62 (311)
+.+++.||.|||++|.+++.+|+. ..|.+||+.+| |+..||+.||.....
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 456789999999999999999983 57999999984 999999999987543
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.51 E-value=1e-07 Score=69.29 Aligned_cols=47 Identities=15% Similarity=0.403 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCC-hhhhhh-cCCCCCHHHHHHHHHHHHH
Q 021498 67 RGLLSEYEEKMVIDLHAQL--------GNR-WSKIAS-HLPGRTDNEIKNHWNTHIK 113 (311)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~--------G~k-W~kIA~-~lpgRT~~qcr~Rw~~~l~ 113 (311)
+.+||.|||..|++.|.+| |++ |..+|+ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 554 999999 8999999999999998764
No 67
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.47 E-value=8.8e-08 Score=95.31 Aligned_cols=46 Identities=11% Similarity=0.218 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHH
Q 021498 68 GLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIK 113 (311)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~ 113 (311)
..||.+|-+++++++.+||.+|..||+.++.||..|||+.|....+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999975443
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.32 E-value=1.4e-07 Score=71.42 Aligned_cols=48 Identities=21% Similarity=0.393 Sum_probs=42.9
Q ss_pred cCCCCHHHHHHHHHHHHHcCC---CCcchhhhhhcccccccccccccccccC
Q 021498 14 KGPWTAEEDKKLINFILTNGQ---CCWRAVPKLAGLLRCGKSCRLRWTNYLR 62 (311)
Q Consensus 14 kg~WT~EED~~L~~lV~k~G~---~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~ 62 (311)
...||.+|+++|.+++..|+. ..|..||..+|+ |+..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 457999999999999999975 579999999997 999999999997654
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.32 E-value=1.1e-07 Score=69.20 Aligned_cols=48 Identities=23% Similarity=0.430 Sum_probs=42.8
Q ss_pred cCCCCHHHHHHHHHHHHHc--------CCCCcchhhh-hhcccccccccccccccccC
Q 021498 14 KGPWTAEEDKKLINFILTN--------GQCCWRAVPK-LAGLLRCGKSCRLRWTNYLR 62 (311)
Q Consensus 14 kg~WT~EED~~L~~lV~k~--------G~~nW~~IA~-~~~~~Rt~~QCr~Rw~n~L~ 62 (311)
+.+||+|||+.|++.|.+| |..-|+.+|+ .++. +|..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence 6789999999999999999 5557999999 6775 999999999999875
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.28 E-value=2.5e-07 Score=83.66 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=44.7
Q ss_pred CccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccC
Q 021498 12 LKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLR 62 (311)
Q Consensus 12 lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~ 62 (311)
...++||+||++++++++.+|| ++|..||+.+++ ||..||+.+|.++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgT-KT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3467899999999999999999 799999999997 999999999988764
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=3.5e-06 Score=61.75 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=44.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCChhhhhh-cCCCCCHHHHHHHHHHH
Q 021498 63 PDLKRGLLSEYEEKMVIDLHAQLGNRWSKIAS-HLPGRTDNEIKNHWNTH 111 (311)
Q Consensus 63 p~l~kg~WT~EED~~Ll~lv~~~G~kW~kIA~-~lpgRT~~qcr~Rw~~~ 111 (311)
|.+....||+||-++-.+++.+||.+|..|++ .|++||..+|...|+..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 66778899999999999999999999999999 58999999999888754
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.09 E-value=6.9e-07 Score=67.45 Aligned_cols=43 Identities=26% Similarity=0.331 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----ChhhhhhcCCCCCHHHHHHHHH
Q 021498 67 RGLLSEYEEKMVIDLHAQLGN----RWSKIASHLPGRTDNEIKNHWN 109 (311)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~----kW~kIA~~lpgRT~~qcr~Rw~ 109 (311)
.+.||.+|+++|..+.+.|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999984 7999999999999999999985
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.08 E-value=4.1e-06 Score=65.55 Aligned_cols=49 Identities=14% Similarity=0.312 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChhhhhhcCCCCCHHHHHHHHHHHHHHHHh
Q 021498 69 LLSEYEEKMVIDLHAQLGN---RWSKIASHLPGRTDNEIKNHWNTHIKKKLR 117 (311)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~---kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~k 117 (311)
.||.|||..||...++-|. .|..||+.|.+|+.+||++||+.+++-..+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 4999999999999999996 799999999999999999999998875443
No 74
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.06 E-value=6.4e-06 Score=77.78 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=79.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCcchhhhhhccccccccccccccccc---------------------------------
Q 021498 15 GPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL--------------------------------- 61 (311)
Q Consensus 15 g~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L--------------------------------- 61 (311)
+.||..+...++.++.+||..+|..||..|++ ++...++. |..++
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~-Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~ 188 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIE-YNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA 188 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHH-HHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHH-HHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999975 77766632 22111
Q ss_pred ------------------CCCCCCCCCCHHHHHHHHHHHHHhCC----Chhhhhh------------cCCCCCHHHHHHH
Q 021498 62 ------------------RPDLKRGLLSEYEEKMVIDLHAQLGN----RWSKIAS------------HLPGRTDNEIKNH 107 (311)
Q Consensus 62 ------------------~p~l~kg~WT~EED~~Ll~lv~~~G~----kW~kIA~------------~lpgRT~~qcr~R 107 (311)
-+..++..||++||..|+-++.+||- .|.+|.. ++..||+.+|..|
T Consensus 189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR 268 (304)
T 1ofc_X 189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR 268 (304)
T ss_dssp HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 02224457999999999999999995 5999963 3467999999999
Q ss_pred HHHHHHHHH
Q 021498 108 WNTHIKKKL 116 (311)
Q Consensus 108 w~~~l~~~~ 116 (311)
...+++-..
T Consensus 269 c~tLi~~ie 277 (304)
T 1ofc_X 269 CNTLITLIE 277 (304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987543
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.19 E-value=1.1e-06 Score=65.29 Aligned_cols=45 Identities=13% Similarity=0.358 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021498 69 LLSEYEEKMVIDLHAQLGN---RWSKIASHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~---kW~kIA~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
.||.|||..|+..+++-|. .|..||+.| +|+++||.+||+.+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 4999999999999999997 799999999 99999999999988764
No 76
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.86 E-value=3.9e-05 Score=60.45 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=51.4
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhcCC-----CCCHHHHHHHHHHHHHHHHhhc
Q 021498 56 RWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLP-----GRTDNEIKNHWNTHIKKKLRKM 119 (311)
Q Consensus 56 Rw~n~L~p~l~kg~WT~EED~~Ll~lv~~~G~kW~kIA~~lp-----gRT~~qcr~Rw~~~l~~~~kk~ 119 (311)
-|..+|. ...||.||...|++++++|+-+|..|+.... +||-.++|.||+.+.++.++..
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3555554 3689999999999999999999999999763 7999999999999998877654
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.82 E-value=3.4e-06 Score=63.68 Aligned_cols=44 Identities=14% Similarity=0.276 Sum_probs=38.8
Q ss_pred cCCCCHHHHHHHHHHHHHcCCC---Ccchhhhhhcccccccccccccc
Q 021498 14 KGPWTAEEDKKLINFILTNGQC---CWRAVPKLAGLLRCGKSCRLRWT 58 (311)
Q Consensus 14 kg~WT~EED~~L~~lV~k~G~~---nW~~IA~~~~~~Rt~~QCr~Rw~ 58 (311)
.+.||.+|+++|.+++..|+.. .|.+||+.+|+ |+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence 4579999999999999999753 79999999997 99999999986
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=1.3e-05 Score=58.76 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=44.5
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHcCCCCcchhhh-hhccccccccccccccc
Q 021498 8 DKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLLRCGKSCRLRWTN 59 (311)
Q Consensus 8 ~K~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~-~~~~~Rt~~QCr~Rw~n 59 (311)
..|.++...||+||-++..+++.+|| .+|..|++ .++. |+..||..-|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~-Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPN-KETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTT-SCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCC-CcHHHHHHHHhc
Confidence 46788899999999999999999999 69999998 5886 999999887753
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.61 E-value=7.7e-05 Score=58.85 Aligned_cols=45 Identities=22% Similarity=0.148 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHH
Q 021498 67 RGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTH 111 (311)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~ 111 (311)
...||++|-++..+++.+||.+|.+||..|++||..+|...|+..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 457999999999999999999999999999999999999988754
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.56 E-value=0.00014 Score=54.20 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhhhhh-cCCCCCHHHHHHHHHH
Q 021498 67 RGLLSEYEEKMVIDLHAQLGNRWSKIAS-HLPGRTDNEIKNHWNT 110 (311)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~kW~kIA~-~lpgRT~~qcr~Rw~~ 110 (311)
...||++|-.+-.+++.+||.+|..|++ .|++||..+|...|+.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4579999999999999999999999999 5999999999998874
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.51 E-value=3.1e-05 Score=77.09 Aligned_cols=47 Identities=21% Similarity=0.317 Sum_probs=42.8
Q ss_pred CccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccc
Q 021498 12 LKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60 (311)
Q Consensus 12 lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~ 60 (311)
....+||.+|-+++++++.+|| ++|..||+.+|+ |+..||+..|.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgT-KT~~Qvk~fy~~~ 424 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNY 424 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSS-CCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3467999999999999999999 799999999997 9999999988764
No 82
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.34 E-value=0.00018 Score=55.21 Aligned_cols=51 Identities=16% Similarity=0.348 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CChhhhhhcC----CCCCHHHHHHHHHHHHHHHHh
Q 021498 67 RGLLSEYEEKMVIDLHAQLG----------NRWSKIASHL----PGRTDNEIKNHWNTHIKKKLR 117 (311)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G----------~kW~kIA~~l----pgRT~~qcr~Rw~~~l~~~~k 117 (311)
...||.+|-..||+++..+. ..|..||..| -.||+.||+.||.++.+...+
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~ 68 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKK 68 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 46799999999999997632 1399999987 379999999999998887543
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.03 E-value=0.00018 Score=56.70 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=41.7
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhc----cccccccccccccccc
Q 021498 13 KKGPWTAEEDKKLINFILTNGQCCWRAVPKLAG----LLRCGKSCRLRWTNYL 61 (311)
Q Consensus 13 kkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~----~~Rt~~QCr~Rw~n~L 61 (311)
+..+||.||+..|.+++++|| ..|..|+.... .+||..+.++||..+.
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 448999999999999999999 78999999883 2499999999998653
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.95 E-value=0.00028 Score=55.56 Aligned_cols=43 Identities=9% Similarity=0.240 Sum_probs=39.3
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccc
Q 021498 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWT 58 (311)
Q Consensus 14 kg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~ 58 (311)
...||+||.++..+++..|| .+|..||+.++. |+..||.+.|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~-Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLER-KTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTT-CCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCC-CCHHHHHHHHh
Confidence 46799999999999999999 799999999986 99999998775
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.91 E-value=0.00032 Score=52.33 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=39.7
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCCcchhhh-hhccccccccccccccc
Q 021498 13 KKGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLLRCGKSCRLRWTN 59 (311)
Q Consensus 13 kkg~WT~EED~~L~~lV~k~G~~nW~~IA~-~~~~~Rt~~QCr~Rw~n 59 (311)
....||+||-++..+++.+|| .+|..|++ .+++ |+..||..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~-Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPW-KSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSS-SCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCC-CCHHHHHHHHHh
Confidence 456899999999999999999 69999999 5886 999999887753
No 86
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.88 E-value=0.0018 Score=62.63 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=78.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCcchhhhhhccccccccccccccccc---------------------------------
Q 021498 15 GPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL--------------------------------- 61 (311)
Q Consensus 15 g~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L--------------------------------- 61 (311)
+.||.-+=..++.++.+||..+-..||..|+++++...++ +|.+++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999888999999887336666555 222221
Q ss_pred -------------------CCCC-CCCCCCHHHHHHHHHHHHHhC----CChhhhhhc------------CCCCCHHHHH
Q 021498 62 -------------------RPDL-KRGLLSEYEEKMVIDLHAQLG----NRWSKIASH------------LPGRTDNEIK 105 (311)
Q Consensus 62 -------------------~p~l-~kg~WT~EED~~Ll~lv~~~G----~kW~kIA~~------------lpgRT~~qcr 105 (311)
.+.. ++..||++||..||-++.+|| +.|.+|-.. +..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 0111 345699999999999999999 459999443 3579999999
Q ss_pred HHHHHHHHHHHhh
Q 021498 106 NHWNTHIKKKLRK 118 (311)
Q Consensus 106 ~Rw~~~l~~~~kk 118 (311)
.|...+++-..+.
T Consensus 283 rRc~tLi~~IeKE 295 (374)
T 2y9y_A 283 RRGNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999765443
No 87
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.62 E-value=0.0034 Score=55.26 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHhC-CChhhhhhc--C------------CCCCHHHHHHHHHHHHH
Q 021498 69 LLSEYEEKMVIDLHAQLG-NRWSKIASH--L------------PGRTDNEIKNHWNTHIK 113 (311)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G-~kW~kIA~~--l------------pgRT~~qcr~Rw~~~l~ 113 (311)
.||.+||..|+..+.+|| ++|..|..- + ..+++..+..|-..+|+
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 599999999999999999 889999652 1 12467789999776665
No 88
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.50 E-value=0.0019 Score=50.49 Aligned_cols=44 Identities=16% Similarity=0.345 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHcCC--CCcchhhhhhccccccccccccccc
Q 021498 15 GPWTAEEDKKLINFILTNGQ--CCWRAVPKLAGLLRCGKSCRLRWTN 59 (311)
Q Consensus 15 g~WT~EED~~L~~lV~k~G~--~nW~~IA~~~~~~Rt~~QCr~Rw~n 59 (311)
-.||.|||..++...++.|. .-|..||+.+++ |++.|+++||+.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~ 79 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRE 79 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHH
Confidence 45999999999999999885 479999999987 999999999986
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.35 E-value=0.00047 Score=52.89 Aligned_cols=49 Identities=24% Similarity=0.544 Sum_probs=38.7
Q ss_pred ccCCCCHHHHHHHHHHHHHcCC---------CCcchhhhhh---ccccccccccccccccc
Q 021498 13 KKGPWTAEEDKKLINFILTNGQ---------CCWRAVPKLA---GLLRCGKSCRLRWTNYL 61 (311)
Q Consensus 13 kkg~WT~EED~~L~~lV~k~G~---------~nW~~IA~~~---~~~Rt~~QCr~Rw~n~L 61 (311)
+...||.+|-..|+++...... .-|..||..| |-.|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999865321 2699999865 44599999999998753
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.07 E-value=0.00098 Score=49.48 Aligned_cols=47 Identities=11% Similarity=0.165 Sum_probs=40.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCC--CCcchhhhhhcccccccccccccccccC
Q 021498 14 KGPWTAEEDKKLINFILTNGQ--CCWRAVPKLAGLLRCGKSCRLRWTNYLR 62 (311)
Q Consensus 14 kg~WT~EED~~L~~lV~k~G~--~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~ 62 (311)
--.||.|||..|+..+++.|. .-|..||+.+ + |++.|+..||+..+.
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMK 62 (70)
Confidence 346999999999999999885 3799999988 3 999999999987543
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.43 E-value=0.13 Score=37.68 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC---hhhhhhcC--CCCCHHHHHHHHHHHH
Q 021498 66 KRGLLSEYEEKMVIDLHAQLGNR---WSKIASHL--PGRTDNEIKNHWNTHI 112 (311)
Q Consensus 66 ~kg~WT~EED~~Ll~lv~~~G~k---W~kIA~~l--pgRT~~qcr~Rw~~~l 112 (311)
.+-.||+|.-+..+++|.++|.. +..|.+.| +|.|..+|+.|.+.+.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999954 88998876 7999999999877654
No 92
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.23 E-value=0.037 Score=48.52 Aligned_cols=38 Identities=26% Similarity=0.489 Sum_probs=31.9
Q ss_pred ccccCCCCccCCCCHHHHHHHHHHHHHcCCCCcchhhh
Q 021498 5 PCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPK 42 (311)
Q Consensus 5 ~~~~K~~lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~ 42 (311)
|++.++.-....||++||..|+.+|.+||-++|..|-.
T Consensus 125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 44555555566799999999999999999999999976
No 93
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.07 E-value=0.034 Score=43.69 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=40.2
Q ss_pred CccCCCCHHHHHHHHHHHHHcCCCCcchhhhhhc----cccccccccccccccc
Q 021498 12 LKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAG----LLRCGKSCRLRWTNYL 61 (311)
Q Consensus 12 lkkg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~----~~Rt~~QCr~Rw~n~L 61 (311)
++...||.||...|.+++++|+ -.|.-|+.... ..|+.-+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999 68999998653 2488888888887653
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.75 E-value=0.2 Score=47.17 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC-ChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021498 68 GLLSEYEEKMVIDLHAQLGN-RWSKIASHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~-kW~kIA~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
+.||..+....+.++.+||. .|..||..|+|+|...|+..+......
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 46999999999999999995 699999999999999997665554443
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.56 E-value=0.46 Score=43.95 Aligned_cols=28 Identities=32% Similarity=0.646 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCcchhhh
Q 021498 15 GPWTAEEDKKLINFILTNGQCCWRAVPK 42 (311)
Q Consensus 15 g~WT~EED~~L~~lV~k~G~~nW~~IA~ 42 (311)
..|+.+||..|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999985
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=84.15 E-value=0.53 Score=34.34 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=34.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHcCCC--Ccchhhhhhcc-cccccccccccc
Q 021498 11 GLKKGPWTAEEDKKLINFILTNGQC--CWRAVPKLAGL-LRCGKSCRLRWT 58 (311)
Q Consensus 11 ~lkkg~WT~EED~~L~~lV~k~G~~--nW~~IA~~~~~-~Rt~~QCr~Rw~ 58 (311)
...+-.||+|.-++.+++|.+.|.. -++.|.+.|+. +.|..+++-|.+
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ 54 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence 3456789999999999999999932 25788887763 256666655444
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=74.34 E-value=6.6 Score=36.12 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CChhhhhh--cCCCCCHHHHHHHHHHHHH
Q 021498 67 RGLLSEYEEKMVIDLHAQLG---NRWSKIAS--HLPGRTDNEIKNHWNTHIK 113 (311)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G---~kW~kIA~--~lpgRT~~qcr~Rw~~~l~ 113 (311)
+++||+.|-..|++.+.+|| .+|..|+. .|+.|+...++.-|..++.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 57899999999999999999 58999976 4789999988888876654
No 98
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=67.51 E-value=22 Score=28.47 Aligned_cols=39 Identities=23% Similarity=0.449 Sum_probs=29.5
Q ss_pred HHHHHHHHhCC--------ChhhhhhcCCCCC----HHHHHHHHHHHHHHH
Q 021498 77 MVIDLHAQLGN--------RWSKIASHLPGRT----DNEIKNHWNTHIKKK 115 (311)
Q Consensus 77 ~Ll~lv~~~G~--------kW~kIA~~lpgRT----~~qcr~Rw~~~l~~~ 115 (311)
+|..+|.+.|+ +|.+||+.|.-.. +.++|..|..+|-+.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 37778888873 6999999983221 468899999998774
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=65.09 E-value=10 Score=26.00 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021498 70 LSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKK 115 (311)
Q Consensus 70 WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~ 115 (311)
.+ +.+..++.++-..|-.+.+||..+ |-+...|+.+.+..+++-
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44 445556666667789999999999 999999998887766554
No 100
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=63.40 E-value=5.5 Score=31.70 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=30.7
Q ss_pred HHHHHHHhCC--------ChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021498 78 VIDLHAQLGN--------RWSKIASHLPGRTDNEIKNHWNTHIKKK 115 (311)
Q Consensus 78 Ll~lv~~~G~--------kW~kIA~~lpgRT~~qcr~Rw~~~l~~~ 115 (311)
|..+|.+.|+ .|.+||..|.--.+..+|..|..+|-+.
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 7888888883 6999999884444889999999988764
No 101
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=62.95 E-value=11 Score=29.16 Aligned_cols=40 Identities=15% Similarity=0.361 Sum_probs=29.9
Q ss_pred HHHHHHHHhC--------CChhhhhhcCCCCC----HHHHHHHHHHHHHHHH
Q 021498 77 MVIDLHAQLG--------NRWSKIASHLPGRT----DNEIKNHWNTHIKKKL 116 (311)
Q Consensus 77 ~Ll~lv~~~G--------~kW~kIA~~lpgRT----~~qcr~Rw~~~l~~~~ 116 (311)
+|..+|.+.| +.|.+||..|.--. +.++|..|..+|-+.-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE 99 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFE 99 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHH
Confidence 3777777887 36999999993322 5788999998887643
No 102
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=62.63 E-value=12 Score=36.00 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC-ChhhhhhcCC-CCCHHHHHHHHHHHHHH
Q 021498 68 GLLSEYEEKMVIDLHAQLGN-RWSKIASHLP-GRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~-kW~kIA~~lp-gRT~~qcr~Rw~~~l~~ 114 (311)
+.||.-+=..++.+..+||. .-..||..|. |+|...|+ +|...+=.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~ 171 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWS 171 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHH
Confidence 46999999999999999995 5999999997 99999999 55554433
No 103
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=62.01 E-value=2.2 Score=34.66 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=38.3
Q ss_pred HHHHHHHcCC-------CCcchhhhhhcccccc----cccccccccccCCCCCCCCCCHHHHHHHHHHHH
Q 021498 25 LINFILTNGQ-------CCWRAVPKLAGLLRCG----KSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHA 83 (311)
Q Consensus 25 L~~lV~k~G~-------~nW~~IA~~~~~~Rt~----~QCr~Rw~n~L~p~l~kg~WT~EED~~Ll~lv~ 83 (311)
|..+|.+.|. +.|..||..++...+. ...|..|.++|.|- ...+++|-..|.+-|.
T Consensus 47 Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 47 FFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 4445555553 4699999998764322 35678888888752 2378888888877664
No 104
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=61.97 E-value=9.9 Score=30.26 Aligned_cols=39 Identities=15% Similarity=0.382 Sum_probs=29.7
Q ss_pred HHHHHHHHhC--------CChhhhhhcCCCCC----HHHHHHHHHHHHHHH
Q 021498 77 MVIDLHAQLG--------NRWSKIASHLPGRT----DNEIKNHWNTHIKKK 115 (311)
Q Consensus 77 ~Ll~lv~~~G--------~kW~kIA~~lpgRT----~~qcr~Rw~~~l~~~ 115 (311)
+|..+|.+.| +.|.+||..|.--. +.++|..|..+|-+.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 3778888888 36999999983222 568899999988764
No 105
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=59.94 E-value=14 Score=26.00 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHH----hCCChhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 021498 70 LSEYEEKMVIDLHAQ----LGNRWSKIASHLPGRTDNEIKNHWNTHIKKKL 116 (311)
Q Consensus 70 WT~EED~~Ll~lv~~----~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~ 116 (311)
.++.|- .++.+.-- .|-.+.+||..+ |-+...|+.+....+++-.
T Consensus 11 L~~~er-~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSEREA-MVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHHH-HHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 444444 45555444 577899999999 9999999998877766543
No 106
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=58.79 E-value=52 Score=25.26 Aligned_cols=86 Identities=17% Similarity=0.123 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccc---ccccccc--CCCCCCCCCCHHHHHHHHHHHHHhC-CC
Q 021498 15 GPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCR---LRWTNYL--RPDLKRGLLSEYEEKMVIDLHAQLG-NR 88 (311)
Q Consensus 15 g~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr---~Rw~n~L--~p~l~kg~WT~EED~~Ll~lv~~~G-~k 88 (311)
...|.++-..++.++ .-| ..-.+||+.+|. +...++ .+|..+- ...-.....+.+++..|+.+ ...+ -.
T Consensus 5 ~~~s~~~r~~i~~~~-~~G-~s~~~ia~~lgi--s~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMK-LLN-VSLHEMSRKISR--SRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHH-HTT-CCHHHHHHHHTC--CHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCCC
T ss_pred ccCCHHHHHHHHHHH-HcC-CCHHHHHHHHCc--CHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCCC
Confidence 347888887777776 345 466899998874 333332 2222211 11112234888888888877 3333 34
Q ss_pred hhhhhhcCCC--CCHHHHHH
Q 021498 89 WSKIASHLPG--RTDNEIKN 106 (311)
Q Consensus 89 W~kIA~~lpg--RT~~qcr~ 106 (311)
=.+|+..+ | -+...|..
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r 98 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILN 98 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHH
Confidence 57788887 4 45555543
No 107
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=57.75 E-value=13 Score=29.77 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=30.3
Q ss_pred HHHHHHHhC--------CChhhhhhcCCCCC----HHHHHHHHHHHHHHHHh
Q 021498 78 VIDLHAQLG--------NRWSKIASHLPGRT----DNEIKNHWNTHIKKKLR 117 (311)
Q Consensus 78 Ll~lv~~~G--------~kW~kIA~~lpgRT----~~qcr~Rw~~~l~~~~k 117 (311)
|..+|.+.| +.|.+||..|.--+ +.++|..|..+|.+.-+
T Consensus 56 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~ 107 (125)
T 2cxy_A 56 LYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFEC 107 (125)
T ss_dssp HHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 777788887 36999999983322 56889999999887544
No 108
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=56.62 E-value=2.4 Score=33.90 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=29.8
Q ss_pred HHHHHHHHcCC-------CCcchhhhhhcccccccccccccccccCC
Q 021498 24 KLINFILTNGQ-------CCWRAVPKLAGLLRCGKSCRLRWTNYLRP 63 (311)
Q Consensus 24 ~L~~lV~k~G~-------~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p 63 (311)
+|..+|.+.|. +.|..||..+|. -.+...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQI-SDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTS-CCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 57778887775 479999999987 4477788888887754
No 109
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=55.56 E-value=14 Score=25.65 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=29.9
Q ss_pred HHHHHHHHH----HhCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021498 75 EKMVIDLHA----QLGNRWSKIASHLPGRTDNEIKNHWNTHIKKK 115 (311)
Q Consensus 75 D~~Ll~lv~----~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~ 115 (311)
+..++.++- ..|-.+.+||..+ |-+...|+.+....+++-
T Consensus 10 er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 10 EAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 344444443 3477899999999 999999999888776653
No 110
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=53.03 E-value=10 Score=30.62 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=31.9
Q ss_pred HHHHHHHhCC--------ChhhhhhcCCCCCHHHHHHHHHHHHHHHHh
Q 021498 78 VIDLHAQLGN--------RWSKIASHLPGRTDNEIKNHWNTHIKKKLR 117 (311)
Q Consensus 78 Ll~lv~~~G~--------kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~k 117 (311)
|..+|.+.|+ .|.+||..|.--.+..+|..|..+|-+.-.
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 7777777773 599999988444489999999999988655
No 111
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=52.77 E-value=3.8 Score=32.10 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=28.7
Q ss_pred HHHHHHHHcCC-------CCcchhhhhhcccc----cccccccccccccCC
Q 021498 24 KLINFILTNGQ-------CCWRAVPKLAGLLR----CGKSCRLRWTNYLRP 63 (311)
Q Consensus 24 ~L~~lV~k~G~-------~nW~~IA~~~~~~R----t~~QCr~Rw~n~L~p 63 (311)
+|..+|.+.|. +.|.+||..+|... .+.+.+..|.++|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777877764 47999999988533 235667778877765
No 112
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=51.71 E-value=25 Score=25.85 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021498 74 EEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 74 ED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
.+..++.++-..|-.-.+||..| |-+...|+.|.+..+++
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44556666667788899999999 99999999887765544
No 113
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=48.70 E-value=9.3 Score=29.10 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=27.9
Q ss_pred HHHHHHHhC--------CChhhhhhcCCCC----CHHHHHHHHHHHHHHH
Q 021498 78 VIDLHAQLG--------NRWSKIASHLPGR----TDNEIKNHWNTHIKKK 115 (311)
Q Consensus 78 Ll~lv~~~G--------~kW~kIA~~lpgR----T~~qcr~Rw~~~l~~~ 115 (311)
|..+|.+.| +.|.+||..|.-- .+.++|..|..+|-+.
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHH
Confidence 777777776 4699999988321 2568888898877654
No 114
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=47.80 E-value=3.4 Score=33.01 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=27.1
Q ss_pred HHHHHHHHcCC-------CCcchhhhhhccccc---ccccccccccccC
Q 021498 24 KLINFILTNGQ-------CCWRAVPKLAGLLRC---GKSCRLRWTNYLR 62 (311)
Q Consensus 24 ~L~~lV~k~G~-------~nW~~IA~~~~~~Rt---~~QCr~Rw~n~L~ 62 (311)
+|..+|.+.|. +.|..||..+|...+ +.+.+..|.++|.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~ 92 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVY 92 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 57788888875 469999999886332 3455666766664
No 115
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=47.59 E-value=21 Score=28.78 Aligned_cols=79 Identities=15% Similarity=0.254 Sum_probs=50.3
Q ss_pred CccCCCCHHHH--HHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhC---
Q 021498 12 LKKGPWTAEED--KKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLG--- 86 (311)
Q Consensus 12 lkkg~WT~EED--~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~l~kg~WT~EED~~Ll~lv~~~G--- 86 (311)
.-+.+|.+.+. +.|.++..+.| ..-..++. +++ |. |+ =-+|..+|.+.|
T Consensus 5 ~~~~r~~~~~~Fl~~L~~F~~~rG-tpl~~~P~-i~g-k~-----------lD------------L~~Ly~~V~~~GG~~ 58 (121)
T 2rq5_A 5 SLGRRWGPNVQRLACIKKHLRSQG-ITMDELPL-IGG-CE-----------LD------------LACFFRLINEMGGMQ 58 (121)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHTT-CCCSSCCE-ETT-EE-----------CC------------HHHHHHHHHHTTSHH
T ss_pred HhhHhcCCcHHHHHHHHHHHHHcC-CCCCCCCc-CCC-Ee-----------cc------------HHHHHHHHHHcCcHH
Confidence 34567987765 45777777777 34444443 232 21 11 123778888888
Q ss_pred -----CChhhhhhcC--CCC---CHHHHHHHHHHHHHHHH
Q 021498 87 -----NRWSKIASHL--PGR---TDNEIKNHWNTHIKKKL 116 (311)
Q Consensus 87 -----~kW~kIA~~l--pgR---T~~qcr~Rw~~~l~~~~ 116 (311)
+.|.+||..| |.- ....+|..|..+|-+.-
T Consensus 59 ~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE 98 (121)
T 2rq5_A 59 QVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD 98 (121)
T ss_dssp HHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH
T ss_pred HhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH
Confidence 3699999988 322 25688999998887743
No 116
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=47.37 E-value=25 Score=28.19 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=30.9
Q ss_pred HHHHHHHHhC--------CChhhhhhcC--CCC---CHHHHHHHHHHHHHHHHh
Q 021498 77 MVIDLHAQLG--------NRWSKIASHL--PGR---TDNEIKNHWNTHIKKKLR 117 (311)
Q Consensus 77 ~Ll~lv~~~G--------~kW~kIA~~l--pgR---T~~qcr~Rw~~~l~~~~k 117 (311)
+|..+|.+.| +.|.+||..| +.. .+.++|..|..+|-+.-.
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~ 109 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYEC 109 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4777888888 3699999988 222 257899999999887543
No 117
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=45.14 E-value=3.7 Score=33.28 Aligned_cols=40 Identities=25% Similarity=0.471 Sum_probs=27.8
Q ss_pred HHHHHHHHcCC-------CCcchhhhhhccccc----ccccccccccccCC
Q 021498 24 KLINFILTNGQ-------CCWRAVPKLAGLLRC----GKSCRLRWTNYLRP 63 (311)
Q Consensus 24 ~L~~lV~k~G~-------~nW~~IA~~~~~~Rt----~~QCr~Rw~n~L~p 63 (311)
+|..+|.+.|. +.|..||..+|...+ +.+.+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777888775 479999999885332 34557777777654
No 118
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=44.58 E-value=41 Score=23.42 Aligned_cols=42 Identities=26% Similarity=0.249 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021498 70 LSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 70 WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
.|+.|-+ ++.++ ..|-.-.+||..+ |-+...|+.+....+++
T Consensus 17 L~~~e~~-vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQ-VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHH-HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4555544 44555 6688899999999 88999999888776655
No 119
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=43.53 E-value=26 Score=28.88 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=30.7
Q ss_pred HHHHHHHHhC--------CChhhhhhcCC--CC---CHHHHHHHHHHHHHHHHh
Q 021498 77 MVIDLHAQLG--------NRWSKIASHLP--GR---TDNEIKNHWNTHIKKKLR 117 (311)
Q Consensus 77 ~Ll~lv~~~G--------~kW~kIA~~lp--gR---T~~qcr~Rw~~~l~~~~k 117 (311)
+|..+|.+.| +.|.+||..|. .. .+.++|..|..+|-+.-.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~ 121 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYEC 121 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 3777888887 36999999882 22 257899999999887543
No 120
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=42.50 E-value=5.5 Score=37.48 Aligned_cols=11 Identities=9% Similarity=0.048 Sum_probs=2.0
Q ss_pred hhhhhhccccc
Q 021498 243 KLLEEWQFHDF 253 (311)
Q Consensus 243 ~~~~~~~~~~~ 253 (311)
.||.+-..|.|
T Consensus 45 ~~l~~~~~p~~ 55 (319)
T 1lsh_B 45 ESFEKHSKPKV 55 (319)
T ss_dssp ------CCCCE
T ss_pred hhhcCCCCceE
Confidence 34444444443
No 121
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=41.70 E-value=15 Score=28.48 Aligned_cols=38 Identities=21% Similarity=0.445 Sum_probs=28.3
Q ss_pred HHHHHHHHhC--------CChhhhhhcCCC--C---CHHHHHHHHHHHHHH
Q 021498 77 MVIDLHAQLG--------NRWSKIASHLPG--R---TDNEIKNHWNTHIKK 114 (311)
Q Consensus 77 ~Ll~lv~~~G--------~kW~kIA~~lpg--R---T~~qcr~Rw~~~l~~ 114 (311)
+|..+|.+.| +.|.+||..|.. . .+.++|..|..+|-+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 3777778887 469999998831 1 246889999988866
No 122
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=41.47 E-value=35 Score=26.55 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHH
Q 021498 71 SEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIK 105 (311)
Q Consensus 71 T~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr 105 (311)
++.-+..|..+....|..|..+|+.| |=+..+|.
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~ 47 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDIN 47 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 66677788888899999999999999 77766553
No 123
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=41.42 E-value=40 Score=25.09 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021498 69 LLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKK 115 (311)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~ 115 (311)
..|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+....+++-
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46766666544 45 7788899999999 999999999887766553
No 124
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=41.33 E-value=32 Score=27.79 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=25.9
Q ss_pred hCCChhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 021498 85 LGNRWSKIASHLPGRTDNEIKNHWNTHIKKKL 116 (311)
Q Consensus 85 ~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~ 116 (311)
.|-...+||..+ |-+...|+.|....+++-.
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 477899999999 9999999999887776543
No 125
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=40.51 E-value=4.4 Score=31.61 Aligned_cols=39 Identities=15% Similarity=0.292 Sum_probs=26.0
Q ss_pred HHHHHHHHcCC-------CCcchhhhhhccccc---ccccccccccccC
Q 021498 24 KLINFILTNGQ-------CCWRAVPKLAGLLRC---GKSCRLRWTNYLR 62 (311)
Q Consensus 24 ~L~~lV~k~G~-------~nW~~IA~~~~~~Rt---~~QCr~Rw~n~L~ 62 (311)
+|..+|.+.|. +.|..||..+|...+ +.+.+..|.++|.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~ 96 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILH 96 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 57777877775 469999999885322 3455666666553
No 126
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=39.94 E-value=7 Score=31.50 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=26.1
Q ss_pred HHHHHHHHcCC-------CCcchhhhhhccccc---ccccccccccccC
Q 021498 24 KLINFILTNGQ-------CCWRAVPKLAGLLRC---GKSCRLRWTNYLR 62 (311)
Q Consensus 24 ~L~~lV~k~G~-------~nW~~IA~~~~~~Rt---~~QCr~Rw~n~L~ 62 (311)
+|..+|.+.|. +.|.+||..++...+ +.+.+..|.++|.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~ 103 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLF 103 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 57777777765 479999998886331 3455666666654
No 127
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=39.71 E-value=41 Score=24.27 Aligned_cols=43 Identities=28% Similarity=0.285 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021498 69 LLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
..|+.|-+.|. ++ ..|-.-.+||+.+ |-+...|+.+.+..+++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 36776665544 44 6788899999999 99999999888766655
No 128
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=39.68 E-value=43 Score=24.35 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=29.8
Q ss_pred HHHHHHHHHH----hCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021498 75 EKMVIDLHAQ----LGNRWSKIASHLPGRTDNEIKNHWNTHIKKK 115 (311)
Q Consensus 75 D~~Ll~lv~~----~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~ 115 (311)
+..++.+.-- .|-.+.+||..+ |-+...|+.+....+++-
T Consensus 23 er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 23 EAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3444544443 567899999999 999999999887776653
No 129
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=39.33 E-value=23 Score=29.01 Aligned_cols=44 Identities=5% Similarity=0.034 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHHHHHHh
Q 021498 73 YEEKMVIDLHAQLG-NRWSKIASHLPGRTDNEIKNHWNTHIKKKLR 117 (311)
Q Consensus 73 EED~~Ll~lv~~~G-~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~k 117 (311)
+-|.+|+++.++.| -.+.+||+.+ |-+...|+.|.+.+....+-
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i 47 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVI 47 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 45788898888877 4599999999 99999999999877766543
No 130
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=38.85 E-value=55 Score=26.47 Aligned_cols=32 Identities=9% Similarity=0.028 Sum_probs=26.1
Q ss_pred hCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHh
Q 021498 85 LGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLR 117 (311)
Q Consensus 85 ~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~k 117 (311)
.|-...+||..+ |-+...|+.|....+++-.+
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 467899999999 99999999998877665433
No 131
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.80 E-value=5.8 Score=31.91 Aligned_cols=38 Identities=18% Similarity=0.365 Sum_probs=24.7
Q ss_pred HHHHHHHHcCC-------CCcchhhhhhccccc---cccccccccccc
Q 021498 24 KLINFILTNGQ-------CCWRAVPKLAGLLRC---GKSCRLRWTNYL 61 (311)
Q Consensus 24 ~L~~lV~k~G~-------~nW~~IA~~~~~~Rt---~~QCr~Rw~n~L 61 (311)
+|..+|.+.|. +.|..||..++...+ +.+.|..|.++|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L 93 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERIL 93 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 57778888775 479999998885321 234455555554
No 132
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=38.71 E-value=47 Score=22.69 Aligned_cols=44 Identities=23% Similarity=0.251 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021498 68 GLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
...|+.|-+.|.- + ..|..-.+||..+ |-+...|+.+....+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3477766665544 4 6678899999999 88999999888776654
No 133
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=36.08 E-value=34 Score=27.11 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=26.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHH
Q 021498 63 PDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIK 105 (311)
Q Consensus 63 p~l~kg~WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr 105 (311)
+.+....=|.+ .|..++...|..|..+|+.| |=+..+|.
T Consensus 15 ~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId 53 (114)
T 2of5_A 15 SHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (114)
T ss_dssp -CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHH
T ss_pred chhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 33444445555 45566788999999999999 66666553
No 134
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=35.97 E-value=32 Score=27.16 Aligned_cols=30 Identities=27% Similarity=0.605 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCChhhhhhcCCCCCHHHHH
Q 021498 75 EKMVIDLHAQLGNRWSKIASHLPGRTDNEIK 105 (311)
Q Consensus 75 D~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr 105 (311)
+..|..+....|..|..+|+.| |=+..+|.
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~ 42 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQ 42 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHH
Confidence 3567777899999999999999 76666553
No 135
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=35.87 E-value=35 Score=27.03 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=25.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHH
Q 021498 65 LKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEI 104 (311)
Q Consensus 65 l~kg~WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qc 104 (311)
+....=|.+ .|..++...|..|..+|+.| |=+..+|
T Consensus 17 ~~~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dI 52 (115)
T 2o71_A 17 ILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (115)
T ss_dssp GGGSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHH
T ss_pred hccCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 333444555 45666788999999999999 6666655
No 136
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=35.72 E-value=67 Score=23.83 Aligned_cols=46 Identities=17% Similarity=0.214 Sum_probs=34.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021498 66 KRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 66 ~kg~WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
.....|+.|-+.|.-++ .|..-.+||..| |-+...|+.+...++++
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34458888777655444 788899999999 99999999988877665
No 137
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=34.88 E-value=30 Score=29.59 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=21.2
Q ss_pred CCCccCCCCHHHHHHHH--------HHHHHcCCCCcchhhh
Q 021498 10 VGLKKGPWTAEEDKKLI--------NFILTNGQCCWRAVPK 42 (311)
Q Consensus 10 ~~lkkg~WT~EED~~L~--------~lV~k~G~~nW~~IA~ 42 (311)
|.-..|-||+|+|+.|. ++++||| |..|..
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie~ 147 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRMEM 147 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHHH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence 34458999999999874 5677777 445543
No 138
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=33.29 E-value=56 Score=22.45 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHH
Q 021498 72 EYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKN 106 (311)
Q Consensus 72 ~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~ 106 (311)
.-|.+.|.++..++|.+.++.|+.+ |=+...+..
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 3477788899999999999999998 656554444
No 139
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=32.46 E-value=76 Score=24.51 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021498 74 EEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 74 ED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
.+..++.++-..|-...+||..+ |-+...|+.|.+..+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34456666667788999999999 99999999887766544
No 140
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=32.43 E-value=17 Score=29.98 Aligned_cols=40 Identities=25% Similarity=0.428 Sum_probs=28.2
Q ss_pred HHHHHHHHcCC-------CCcchhhhhhccccc----ccccccccccccCC
Q 021498 24 KLINFILTNGQ-------CCWRAVPKLAGLLRC----GKSCRLRWTNYLRP 63 (311)
Q Consensus 24 ~L~~lV~k~G~-------~nW~~IA~~~~~~Rt----~~QCr~Rw~n~L~p 63 (311)
+|..+|.+.|. +.|.+||..++...+ +.+.+..|.++|-|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 46677777765 479999998885332 34567778888765
No 141
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.20 E-value=67 Score=21.14 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021498 75 EKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 75 D~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
+..++.++ ..|-.-.+||..+ |-+...|+.+....+++
T Consensus 3 e~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKLI-DEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHHH-HTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 34556663 5688889999999 99999999888776655
No 142
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=31.10 E-value=71 Score=23.65 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHH
Q 021498 72 EYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHW 108 (311)
Q Consensus 72 ~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw 108 (311)
.-|...|.+++.++|.+-++.|+.| |=+...++.|-
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rkl 85 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3477788899999999999999998 77776665543
No 143
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=30.59 E-value=40 Score=28.83 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=14.4
Q ss_pred CCCCCCCCCHHHHHHHH
Q 021498 63 PDLKRGLLSEYEEKMVI 79 (311)
Q Consensus 63 p~l~kg~WT~EED~~Ll 79 (311)
|.-..|-||.++|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 45678899999999887
No 144
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=30.59 E-value=76 Score=24.55 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=23.8
Q ss_pred hCCChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021498 85 LGNRWSKIASHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 85 ~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
.|-...+||..| |-+...|+.+.+..+++
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 467799999999 99999999888766544
No 145
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=30.56 E-value=52 Score=24.00 Aligned_cols=42 Identities=29% Similarity=0.236 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021498 70 LSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 70 WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
.|+.|-+.| .++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 30 Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 30 LTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp CCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 566665544 444 5788899999999 99999999988766655
No 146
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=30.55 E-value=11 Score=30.91 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCC
Q 021498 20 EEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRP 63 (311)
Q Consensus 20 EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p 63 (311)
+-|.+|+.++++.|.-.+.+||+.+| -+...|+.|..+....
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEED 44 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 45888999999999889999999998 5666777776655433
No 147
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=30.51 E-value=72 Score=25.28 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHHHHHHh
Q 021498 73 YEEKMVIDLHAQLG-NRWSKIASHLPGRTDNEIKNHWNTHIKKKLR 117 (311)
Q Consensus 73 EED~~Ll~lv~~~G-~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~k 117 (311)
+-|..|+.+.++.| -.+.+||+.+ |-+...|+.|.+.+.+..+-
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 44667778777776 4699999999 88999999999888766443
No 148
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=30.14 E-value=57 Score=25.23 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCChhhhhhcCCCCCHHHHHH
Q 021498 76 KMVIDLHAQLGNRWSKIASHLPGRTDNEIKN 106 (311)
Q Consensus 76 ~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~ 106 (311)
..|-.+....|..|..+|++| |=+..+|..
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 19 EQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 345566677899999999999 777666643
No 149
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=28.29 E-value=98 Score=25.63 Aligned_cols=31 Identities=6% Similarity=-0.031 Sum_probs=25.1
Q ss_pred HhCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021498 84 QLGNRWSKIASHLPGRTDNEIKNHWNTHIKKK 115 (311)
Q Consensus 84 ~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~ 115 (311)
..|-...+||..| |-+...|+.+....+++-
T Consensus 201 ~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 201 YEELPAKEVAKIL-ETSVSRVSQLKAKALERL 231 (239)
T ss_dssp TSCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 4477899999999 999999998887665543
No 150
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=27.34 E-value=62 Score=26.79 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 021498 73 YEEKMVIDLHAQLG-NRWSKIASHLPGRTDNEIKNHWNTHIKKKL 116 (311)
Q Consensus 73 EED~~Ll~lv~~~G-~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~ 116 (311)
+-|.+|+.+.++.| ..+.+||+.+ |-+...|+.|.+.+.+..+
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 70 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 55677888888877 4699999999 8999999999987766543
No 151
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=27.17 E-value=19 Score=27.56 Aligned_cols=45 Identities=13% Similarity=0.322 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCCCC-------CCCCCCHHHHHHHH
Q 021498 22 DKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDL-------KRGLLSEYEEKMVI 79 (311)
Q Consensus 22 D~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~l-------~kg~WT~EED~~Ll 79 (311)
+..|.++|..|| |...+..+. ..|. .-+|.+ ++.+|..+..+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-----I~CF-----~~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-----INCF-----KKDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-----SSST-----TSSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-----cccC-----CCCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 468899999999 998888554 3444 235654 56789888777665
No 152
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=25.03 E-value=2.5e+02 Score=22.10 Aligned_cols=78 Identities=10% Similarity=0.075 Sum_probs=46.3
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCCcchhhhhhcccccccccccccccc------cCCCCC----CCCCCHHHHHHHHHHHH
Q 021498 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY------LRPDLK----RGLLSEYEEKMVIDLHA 83 (311)
Q Consensus 14 kg~WT~EED~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~------L~p~l~----kg~WT~EED~~Ll~lv~ 83 (311)
..+.|.++-..++.++. .| ..-.+||+.++. +...++ ||.+. +.+... ....+.++.+.|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lgi--s~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QG-VRPCDISRQLRV--SHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HT-CCHHHHHHHHTC--CSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCc--CHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34689998888888774 45 567899998874 333322 33322 222211 23478777888888887
Q ss_pred HhC-CChhhhhhcC
Q 021498 84 QLG-NRWSKIASHL 96 (311)
Q Consensus 84 ~~G-~kW~kIA~~l 96 (311)
+.. -.-.+|+..+
T Consensus 98 ~~~~~s~~~i~~~l 111 (159)
T 2k27_A 98 QNPTMFAWEIRDRL 111 (159)
T ss_dssp HCSSSCHHHHHHHH
T ss_pred HCccchHHHHHHHH
Confidence 643 2234555544
No 153
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=24.87 E-value=84 Score=24.97 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 021498 73 YEEKMVIDLHAQLG-NRWSKIASHLPGRTDNEIKNHWNTHIKKKL 116 (311)
Q Consensus 73 EED~~Ll~lv~~~G-~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~ 116 (311)
+-|..|+.+.++.| -.+.+||+.+ |-+...|+.|.+.+....+
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 50 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 34667788877777 4699999999 8999999999988776644
No 154
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=23.38 E-value=1.2e+02 Score=23.36 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021498 70 LSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 70 WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
+++.+ ..++.++-..|-.-.+||..+ |-+...|+.+.+..+++
T Consensus 23 L~~~~-r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 23 LTDKQ-MNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp SCHHH-HHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44444 456666667788999999999 99999999888766544
No 155
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=23.11 E-value=60 Score=25.70 Aligned_cols=69 Identities=9% Similarity=-0.021 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCCCcchhhhhhcccccccccccccccccCCC-CCCC-CCCHHHHHHHH--------HHHHHhCCChhh
Q 021498 22 DKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPD-LKRG-LLSEYEEKMVI--------DLHAQLGNRWSK 91 (311)
Q Consensus 22 D~~L~~lV~k~G~~nW~~IA~~~~~~Rt~~QCr~Rw~n~L~p~-l~kg-~WT~EED~~Ll--------~lv~~~G~kW~k 91 (311)
-++|+.++.++. .+-..|.+.+- ++......--.-.+++. ...+ -|+..+|..|. +++++||. ..
T Consensus 14 ~~~i~~lMeef~-~DL~sVTqAlL--K~SGel~at~~fL~~~~r~dg~PiWsr~DD~~Lqk~D~~~R~qL~~KfG~--en 88 (111)
T 3k6g_A 14 IKIIRQLMEKFN-LDLSTVTQAFL--KNSGELEATSAFLASGQRADGYPIWSRQDDIDLQKDDEDTREALVKKFGA--QN 88 (111)
T ss_dssp HHHHHHHHHHTT-CCHHHHHHHHH--HTTTCHHHHHHHHHHSSCTTSCCCCCHHHHHHHTCCCHHHHHHHHHHHCH--HH
T ss_pred HHHHHHHHHHHh-hhHHHHHHHHH--HccccHHHHHHHHhCCCcCCCCcceeeccHHHHhcCCHHHHHHHHHHHhh--HH
Confidence 466788888888 57777777654 45554433212233442 1223 49999998876 67888996 34
Q ss_pred hhhc
Q 021498 92 IASH 95 (311)
Q Consensus 92 IA~~ 95 (311)
||+.
T Consensus 89 VAkR 92 (111)
T 3k6g_A 89 VARR 92 (111)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 156
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=22.61 E-value=1.6e+02 Score=22.24 Aligned_cols=45 Identities=22% Similarity=0.175 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021498 67 RGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKK 114 (311)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~ 114 (311)
....|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+...++++
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34578888776644 4 3688899999999 88999999888776665
No 157
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=21.18 E-value=1.1e+02 Score=24.28 Aligned_cols=43 Identities=12% Similarity=0.025 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHh
Q 021498 74 EEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLR 117 (311)
Q Consensus 74 ED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw~~~l~~~~k 117 (311)
++..++.+....|-.-.+||..| |-+...|+.|....+++-.+
T Consensus 97 ~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 97 LSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp THHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 34445555555678899999999 99999999998776655433
No 158
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=20.41 E-value=1.5e+02 Score=17.71 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHH
Q 021498 69 LLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHW 108 (311)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kW~kIA~~lpgRT~~qcr~Rw 108 (311)
..+.++-..++.++ .-|....+||+.+ |-+...|+...
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 35666666677665 4577899999999 88887776543
Done!