BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021499
         (311 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9Z1Z9|PDLI7_RAT PDZ and LIM domain protein 7 OS=Rattus norvegicus GN=Pdlim7 PE=1
           SV=1
          Length = 457

 Score = 32.7 bits (73), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 164 GKAAPVDELQVQGVDNPVLLRKVIVTEAAKVIQNSSKNWKVNAFTGEVESMSRMASLTEG 223
           G   P D    Q   N  LLR+++   + + +  ++++W+    TG+  S   +A LT G
Sbjct: 120 GAPPPTDSALSQ---NGQLLRQLVPDASKQRLMENTEDWRPRPGTGQSRSFRILAHLT-G 175

Query: 224 TAVLRSPSKSW--KMAGLPRQASVEHRGMVPGE 254
           T  ++ P + +  K + +PR  +      +P E
Sbjct: 176 TEFMQDPDEEFMKKSSQVPRTEAPAPASTIPQE 208


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.134    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,570,891
Number of Sequences: 539616
Number of extensions: 4184740
Number of successful extensions: 15430
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15429
Number of HSP's gapped (non-prelim): 5
length of query: 311
length of database: 191,569,459
effective HSP length: 117
effective length of query: 194
effective length of database: 128,434,387
effective search space: 24916271078
effective search space used: 24916271078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)