Query 021499
Match_columns 311
No_of_seqs 34 out of 36
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 03:27:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03703 bPH_2: Bacterial PH d 98.2 1.2E-06 2.6E-11 63.3 2.4 75 100-185 3-78 (80)
2 COG3402 Uncharacterized conser 97.4 0.0004 8.6E-09 61.9 6.2 87 84-192 65-155 (161)
3 COG3428 Predicted membrane pro 93.5 0.13 2.9E-06 52.6 5.6 80 65-166 44-124 (494)
4 COG3428 Predicted membrane pro 93.5 0.26 5.6E-06 50.6 7.6 106 68-195 237-343 (494)
5 PF04281 Tom22: Mitochondrial 66.4 6.6 0.00014 34.3 3.3 34 61-94 76-113 (137)
6 PF06305 DUF1049: Protein of u 52.2 8 0.00017 28.1 1.2 35 66-100 17-52 (68)
7 KOG3156 Uncharacterized membra 45.4 21 0.00045 33.9 3.0 32 50-82 185-216 (220)
8 KOG0158 Cytochrome P450 CYP3/C 41.3 1.5E+02 0.0033 30.7 8.7 62 114-194 33-98 (499)
9 PF07798 DUF1640: Protein of u 37.5 36 0.00079 29.7 3.2 24 59-82 150-173 (177)
10 PF12269 zf-CpG_bind_C: CpG bi 34.0 35 0.00075 32.4 2.7 46 258-303 43-99 (236)
11 PF12955 DUF3844: Domain of un 28.2 76 0.0016 26.9 3.5 31 53-83 60-90 (103)
12 PF06459 RR_TM4-6: Ryanodine R 28.1 60 0.0013 31.2 3.2 21 66-86 171-191 (274)
13 PRK07353 F0F1 ATP synthase sub 24.7 87 0.0019 25.6 3.2 29 63-94 7-35 (140)
14 CHL00118 atpG ATP synthase CF0 24.7 88 0.0019 26.6 3.3 39 53-94 13-52 (156)
15 PF15128 T_cell_tran_alt: T-ce 24.5 64 0.0014 27.1 2.3 14 66-79 34-48 (92)
16 PF07263 DMP1: Dentin matrix p 24.1 34 0.00074 35.8 0.9 22 69-94 3-24 (514)
17 PHA00022 VII minor coat protei 23.1 50 0.0011 22.6 1.2 22 61-82 2-23 (28)
18 PF05529 Bap31: B-cell recepto 21.9 62 0.0013 28.2 1.9 35 63-99 2-36 (192)
19 PF07782 DC_STAMP: DC-STAMP-li 21.6 1.1E+02 0.0023 27.0 3.3 39 62-100 143-181 (191)
20 KOG4551 GPI-GlcNAc transferase 20.8 1.4E+02 0.003 27.8 3.9 55 72-145 64-128 (184)
21 PRK14475 F0F1 ATP synthase sub 20.2 1.2E+02 0.0026 26.1 3.3 32 62-94 9-40 (167)
No 1
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=98.15 E-value=1.2e-06 Score=63.29 Aligned_cols=75 Identities=16% Similarity=0.333 Sum_probs=59.2
Q ss_pred cceeEeecCceEEEecCCcccccccc-ccccceecCchhhhhhhhhchhhheeceeEEEEeeeecCCCCCCCceeEeeec
Q 021499 100 SRKLYVTPSEIVYKVSRPSFIPFWGK-TTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESIARGKAAPVDELQVQGVD 178 (311)
Q Consensus 100 SrkLyvT~~~IVYKVsRPs~~P~~Gv-~r~Ek~VpL~~V~DiiieQG~LqslfGihslriEsig~~k~~p~D~lqi~GV~ 178 (311)
+.+..+|++.++.+ .|+ .+++..+|++.|.+|-++||++|+.||+.++.+++++.++..+ .+-..++.
T Consensus 3 ~~~y~i~~~~l~i~---------~G~~~~~~~~i~~~~Iq~v~~~q~~~~r~~g~~~i~i~~~~~~~~~~--~i~~~~~~ 71 (80)
T PF03703_consen 3 NTGYTITDDRLIIR---------SGLFSKRTTIIPLDRIQSVSIKQNPLQRLFGLGTIKIDTAGGSGEKI--EIPFLSIE 71 (80)
T ss_pred EEEEEEECCEEEEE---------ECeEEEEEEEEEhhHeEEEEEEcCHHHHhCccEEEEEEECCCCCcee--EEecCCHH
Confidence 44577888887733 255 7899999999999999999999999999999999999998642 35555555
Q ss_pred ChhhHHH
Q 021499 179 NPVLLRK 185 (311)
Q Consensus 179 np~~fRk 185 (311)
+|..+++
T Consensus 72 ~a~~i~~ 78 (80)
T PF03703_consen 72 DAEEIYD 78 (80)
T ss_pred HHHHHHh
Confidence 6665554
No 2
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.0004 Score=61.85 Aligned_cols=87 Identities=22% Similarity=0.363 Sum_probs=68.9
Q ss_pred HHhhh--hhhheehhccccceeEeecCceEEEecCCccccccccccccceecCchhhhhhhhhchhhheeceeEEEEeee
Q 021499 84 LLYLP--IRRYVLKKDISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESI 161 (311)
Q Consensus 84 LLylP--irryv~rkdi~SrkLyvT~~~IVYKVsRPs~~P~~Gv~r~Ek~VpL~~V~DiiieQG~LqslfGihslriEsi 161 (311)
|.-.| +|.-+.|-|++--.++++++.++ ++++-+|..-|--|=.+||||+|.||+-+++|-||
T Consensus 65 l~iiP~~~Ryr~wry~v~~~el~iq~GiLv---------------~~r~viP~~RVQhVDt~~GPL~R~~~La~vti~TA 129 (161)
T COG3402 65 LFIIPQLVRYRVWRYEVEEDELDIQHGILV---------------RTRTVIPYVRVQHVDTEQGPLLRRYGLATVTITTA 129 (161)
T ss_pred hhhhhHHHhhhhheeecccceEEeeccEEE---------------EEEEEeeEEEEEeeecccChHHHHhCcceEEEEec
Confidence 34468 67778899999999999999655 67778888888888899999999999999999999
Q ss_pred ecCCCCCCCceeEeee--cChhhHHHHHHHHHH
Q 021499 162 ARGKAAPVDELQVQGV--DNPVLLRKVIVTEAA 192 (311)
Q Consensus 162 g~~k~~p~D~lqi~GV--~np~~fRk~Vl~~~s 192 (311)
|. +..|.|+ ..++.+|..+...+.
T Consensus 130 ss-------~~~IeaL~~~eAdrlr~~l~~la~ 155 (161)
T COG3402 130 SS-------DHTIEALDREEADRLRERLANLAR 155 (161)
T ss_pred cc-------cceecccCHHHHHHHHHHHHHHHH
Confidence 86 3566665 457778777655443
No 3
>COG3428 Predicted membrane protein [Function unknown]
Probab=93.50 E-value=0.13 Score=52.62 Aligned_cols=80 Identities=16% Similarity=0.373 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheehhccccceeEeecCceEEEecCCcccccccc-ccccceecCchhhhhhhh
Q 021499 65 IWFSISLLLVLAWGVGVFMLLYLPIRRYVLKKDISSRKLYVTPSEIVYKVSRPSFIPFWGK-TTNERHVPLSLVIDVIIE 143 (311)
Q Consensus 65 iW~liSlLLvLAWGvGilmLLylPirryv~rkdi~SrkLyvT~~~IVYKVsRPs~~P~~Gv-~r~Ek~VpL~~V~Diiie 143 (311)
-|..+-+..+++|+|-= |-+|.. =+-.+|++++. + -.|+ .|+++.+|.+-|--|=..
T Consensus 44 ~w~~~~~vv~vi~~i~~-------ii~w~~------~~Yried~~~~--l-------~~Gi~~rk~r~i~~~RIQsVd~t 101 (494)
T COG3428 44 FWGGAALVVLVIFLILQ-------IIKWIT------FTYRIEDEEVR--L-------QTGIFSRKKRYIPIDRIQSVDTT 101 (494)
T ss_pred eeeeehhhHHHHHHHHh-------hhEEEE------EEEEEecceEE--E-------EeeEEeecceecchHhhhhhHHH
Confidence 38888888888887643 222332 12234444444 2 2344 899999999999999999
Q ss_pred hchhhheeceeEEEEeeeecCCC
Q 021499 144 QGCLQSIYGIHTFRVESIARGKA 166 (311)
Q Consensus 144 QG~LqslfGihslriEsig~~k~ 166 (311)
||-+|++||+-.++|||+|-++-
T Consensus 102 ~~lv~rlfgl~~l~IeTaGg~~e 124 (494)
T COG3428 102 AGLVARLFGLVVLRIETAGGGGE 124 (494)
T ss_pred HHHHHHhhccEEEEEEcCCCCCc
Confidence 99999999999999999986544
No 4
>COG3428 Predicted membrane protein [Function unknown]
Probab=93.47 E-value=0.26 Score=50.60 Aligned_cols=106 Identities=15% Similarity=0.247 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhheehhccccceeEeecCceEEEecCCcccccccc-ccccceecCchhhhhhhhhch
Q 021499 68 SISLLLVLAWGVGVFMLLYLPIRRYVLKKDISSRKLYVTPSEIVYKVSRPSFIPFWGK-TTNERHVPLSLVIDVIIEQGC 146 (311)
Q Consensus 68 liSlLLvLAWGvGilmLLylPirryv~rkdi~SrkLyvT~~~IVYKVsRPs~~P~~Gv-~r~Ek~VpL~~V~DiiieQG~ 146 (311)
++=++++.||++++...++ |-|..|.---++.|.++. |. -|++-++||..+.-|-++|-+
T Consensus 237 ~~vl~llvaW~~s~~~tm~---rf~~fq~~~~~~~L~ier----------------GLlerr~~Tipl~RlqaV~l~esl 297 (494)
T COG3428 237 LAVLLLLVAWLLSIALTMF---RFYGFQVMKENGVLHIER----------------GLLERRKVTIPLRRLQAVTLRESL 297 (494)
T ss_pred HHHHHHHHHHHHHHHHHhh---hhhceEEEecCCEEEEEe----------------eeeecccceeehhheEEEEeechH
Confidence 4456777899999944432 223332222255555544 44 788999999999999999999
Q ss_pred hhheeceeEEEEeeeecCCCCCCCceeEeeecChhhHHHHHHHHHHHhh
Q 021499 147 LQSIYGIHTFRVESIARGKAAPVDELQVQGVDNPVLLRKVIVTEAAKVI 195 (311)
Q Consensus 147 LqslfGihslriEsig~~k~~p~D~lqi~GV~np~~fRk~Vl~~~s~~~ 195 (311)
|.++||.-++.|+++|..+-.+. +-.=..=|-.=|+.++.-+.++.
T Consensus 298 lrrl~G~~~v~v~~aG~~gd~~~---sgs~~llP~~~k~~v~~~L~~~~ 343 (494)
T COG3428 298 LRRLFGYAAVDVVTAGVHGDSQS---SGSTPLLPFIKKEAVLKLLRENT 343 (494)
T ss_pred HHHhhccEEEEEEEecCCCCCcC---CCceeccccccHHHHHHHHHHhC
Confidence 99999999999999993222221 11112345555777777777664
No 5
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=66.39 E-value=6.6 Score=34.33 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=25.2
Q ss_pred chhHHHHHHHHHHH---HHHHHHH-HHHHhhhhhhhee
Q 021499 61 YDTIIWFSISLLLV---LAWGVGV-FMLLYLPIRRYVL 94 (311)
Q Consensus 61 YdT~iW~liSlLLv---LAWGvGi-lmLLylPirryv~ 94 (311)
+.++-|..-++.-+ ++|.++- .|||-+|+-.-+.
T Consensus 76 ~~~~~~~~k~~~~~~g~a~Wi~tTSallLgvPl~l~ie 113 (137)
T PF04281_consen 76 VSTTSSAVKSLFSFSGKALWIVTTSALLLGVPLALEIE 113 (137)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666555 7999999 9999999976544
No 6
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=52.16 E-value=8 Score=28.07 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhhhhheehhcccc
Q 021499 66 WFSISLLLVLAWGVGV-FMLLYLPIRRYVLKKDISS 100 (311)
Q Consensus 66 W~liSlLLvLAWGvGi-lmLLylPirryv~rkdi~S 100 (311)
|+-.+++++.+-++|+ ++.|+.-...+-.|+.+++
T Consensus 17 ~~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~ 52 (68)
T PF06305_consen 17 PLPLGLLILIAFLLGALLGWLLSLPSRLRLRRRIRR 52 (68)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888999999998 6666666666666655543
No 7
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=45.40 E-value=21 Score=33.86 Aligned_cols=32 Identities=22% Similarity=0.197 Sum_probs=21.9
Q ss_pred cHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 021499 50 SFEELASNSVKYDTIIWFSISLLLVLAWGVGVF 82 (311)
Q Consensus 50 SFeE~~~n~vkYdT~iW~liSlLLvLAWGvGil 82 (311)
+|....+ .+||||+||+.-.+.-++|=+.|++
T Consensus 185 ~lk~qi~-s~K~qt~qw~~g~v~~~~Al~La~~ 216 (220)
T KOG3156|consen 185 NLKTQIE-SVKTQTIQWLIGVVTGTSALVLAYL 216 (220)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444343 4699999999888777766555553
No 8
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.32 E-value=1.5e+02 Score=30.68 Aligned_cols=62 Identities=24% Similarity=0.514 Sum_probs=40.2
Q ss_pred ecCCcccccccc----ccccceecCchhhhhhhhhchhhheeceeEEEEeeeecCCCCCCCceeEeeecChhhHHHHHHH
Q 021499 114 VSRPSFIPFWGK----TTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESIARGKAAPVDELQVQGVDNPVLLRKVIVT 189 (311)
Q Consensus 114 VsRPs~~P~~Gv----~r~Ek~VpL~~V~DiiieQG~LqslfGihslriEsig~~k~~p~D~lqi~GV~np~~fRk~Vl~ 189 (311)
|.-|-..|+||. .+.|++ =....|+.-.+ -.+||+|-++ +|+-+ |.||...|++.+.
T Consensus 33 i~~~~p~p~~Gn~~~~~~~~~~--~~~~~~~~~~~---~~~~G~y~~~-------~p~l~-------v~D~elik~I~ik 93 (499)
T KOG0158|consen 33 IPGPKPLPFLGNLPGMLKRERP--GDLLLDIYTKY---RPVVGIYEGR-------QPALL-------VSDPELIKEILIK 93 (499)
T ss_pred CCCCCCCCcEecHHHHHhccCc--HHHHHHHHhcC---CCEEEEEecC-------CcceE-------ecCHHHHHHHHHH
Confidence 444555699997 344544 33334444444 6789999765 34333 7899999999887
Q ss_pred HHHHh
Q 021499 190 EAAKV 194 (311)
Q Consensus 190 ~~s~~ 194 (311)
..++-
T Consensus 94 ~F~~F 98 (499)
T KOG0158|consen 94 DFDNF 98 (499)
T ss_pred hCccC
Confidence 77754
No 9
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=37.55 E-value=36 Score=29.66 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=18.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Q 021499 59 VKYDTIIWFSISLLLVLAWGVGVF 82 (311)
Q Consensus 59 vkYdT~iW~liSlLLvLAWGvGil 82 (311)
+|+||++|+...++.++|=++|++
T Consensus 150 ~K~~~lr~~~g~i~~~~a~~la~~ 173 (177)
T PF07798_consen 150 LKWDTLRWLVGVIFGCVALVLAIL 173 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999998776666667666664
No 10
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=34.05 E-value=35 Score=32.45 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=32.1
Q ss_pred hcHHHHHHhHHHHHHHHhhhccCCCcc-----------cceEEEEeeecCCCCCCcc
Q 021499 258 HKLDEVNKSVKVCIILIKLFSFQPTES-----------FPLYIYCVSFGDSTNPKSS 303 (311)
Q Consensus 258 ~KLeEV~~SVKriE~Lle~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 303 (311)
.+|.|++..-++||.+|++-..++.+. --+++|||+-|-+-+++..
T Consensus 43 ~~l~eLe~~~~el~~~i~~~k~~~~~~~~~~~~~e~~D~~~~~~Cv~Cg~~i~~~~a 99 (236)
T PF12269_consen 43 NRLQELEKRFKELEAIIARAKQFTVDQDEEQNDDESEDDDLSIYCVTCGHEIPSKKA 99 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcccccccccccccceeeeeeeCCCcCCHHHH
Confidence 456777777788888888733332222 3479999999988887653
No 11
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=28.20 E-value=76 Score=26.87 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=25.8
Q ss_pred HHhcccccchhHHHHHHHHHHHHHHHHHHHH
Q 021499 53 ELASNSVKYDTIIWFSISLLLVLAWGVGVFM 83 (311)
Q Consensus 53 E~~~n~vkYdT~iW~liSlLLvLAWGvGilm 83 (311)
+-.|-.+.+.-+-|..+.|+++++++||+|.
T Consensus 60 qKkDvS~~F~L~~~~ti~lv~~~~~~I~lL~ 90 (103)
T PF12955_consen 60 QKKDVSVPFWLFAGFTIALVVLVAGAIGLLF 90 (103)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677888888999999999999999864
No 12
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=28.12 E-value=60 Score=31.17 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 021499 66 WFSISLLLVLAWGVGVFMLLY 86 (311)
Q Consensus 66 W~liSlLLvLAWGvGilmLLy 86 (311)
.-+=-|+||||..|=+++|+|
T Consensus 171 YNlr~lALflAFaINFILLFY 191 (274)
T PF06459_consen 171 YNLRFLALFLAFAINFILLFY 191 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445568999999999999987
No 13
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=24.73 E-value=87 Score=25.62 Aligned_cols=29 Identities=21% Similarity=0.477 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhee
Q 021499 63 TIIWFSISLLLVLAWGVGVFMLLYLPIRRYVL 94 (311)
Q Consensus 63 T~iW~liSlLLvLAWGvGilmLLylPirryv~ 94 (311)
|+.|.++ .+++|+|.++. +||-|+...+-
T Consensus 7 t~~~~~i-~flil~~ll~~--~l~~pi~~~l~ 35 (140)
T PRK07353 7 TLPLMAV-QFVLLTFILNA--LFYKPVGKVVE 35 (140)
T ss_pred hHHHHHH-HHHHHHHHHHH--HHHHHHHHHHH
Confidence 5555554 55688887776 57899887765
No 14
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=24.72 E-value=88 Score=26.63 Aligned_cols=39 Identities=21% Similarity=0.384 Sum_probs=24.8
Q ss_pred HHhcccccch-hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhee
Q 021499 53 ELASNSVKYD-TIIWFSISLLLVLAWGVGVFMLLYLPIRRYVL 94 (311)
Q Consensus 53 E~~~n~vkYd-T~iW~liSlLLvLAWGvGilmLLylPirryv~ 94 (311)
++.++.+..| |+.|.++. .++|.|.++ -++|-|+...+-
T Consensus 13 ~~~~~~~~~n~t~~~~~in-FliL~~lL~--k~l~~Pi~~~l~ 52 (156)
T CHL00118 13 EGAGGLFDFNATLPLMALQ-FLLLMVLLN--IILYKPLLKVLD 52 (156)
T ss_pred cccCCccccchHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHH
Confidence 4555556665 55566664 456777665 457899887665
No 15
>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered
Probab=24.48 E-value=64 Score=27.14 Aligned_cols=14 Identities=57% Similarity=1.260 Sum_probs=9.1
Q ss_pred HHHHHHHHH-HHHHH
Q 021499 66 WFSISLLLV-LAWGV 79 (311)
Q Consensus 66 W~liSlLLv-LAWGv 79 (311)
|++.||+.| +||.+
T Consensus 34 WlvlsLl~I~lAWk~ 48 (92)
T PF15128_consen 34 WLVLSLLAIHLAWKV 48 (92)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777665 56654
No 16
>PF07263 DMP1: Dentin matrix protein 1 (DMP1); InterPro: IPR009889 This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21 []. DMP1 is a bone and teeth specific protein initially identified from mineralised dentin. DMP1 is primarily localised in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca2+ surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralised matrix formation extracellularly, at later stages of osteoblast maturation []. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown [].; GO: 0001503 ossification, 0030198 extracellular matrix organization
Probab=24.15 E-value=34 Score=35.84 Aligned_cols=22 Identities=41% Similarity=0.851 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhee
Q 021499 69 ISLLLVLAWGVGVFMLLYLPIRRYVL 94 (311)
Q Consensus 69 iSlLLvLAWGvGilmLLylPirryv~ 94 (311)
.++||+++||.. .-||+.||--
T Consensus 3 tsill~~lwgls----~alpvary~n 24 (514)
T PF07263_consen 3 TSILLMFLWGLS----CALPVARYQN 24 (514)
T ss_pred ceeHHHHHHHhh----cccchhhhcC
Confidence 367899999944 4589999964
No 17
>PHA00022 VII minor coat protein
Probab=23.10 E-value=50 Score=22.55 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 021499 61 YDTIIWFSISLLLVLAWGVGVF 82 (311)
Q Consensus 61 YdT~iW~liSlLLvLAWGvGil 82 (311)
+||++-+.+.+-||+..|.|++
T Consensus 2 ~D~i~q~v~~lglVi~FgLG~I 23 (28)
T PHA00022 2 FDTIYQVVIALGLVICFGLGAI 23 (28)
T ss_pred hHhHHHHHHHHhHHHhhcccee
Confidence 5889999999999999999864
No 18
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.93 E-value=62 Score=28.19 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhheehhccc
Q 021499 63 TIIWFSISLLLVLAWGVGVFMLLYLPIRRYVLKKDIS 99 (311)
Q Consensus 63 T~iW~liSlLLvLAWGvGilmLLylPirryv~rkdi~ 99 (311)
+++|.+.-.+|+. -+++++||.+|+-..+-|+=++
T Consensus 2 sl~~~lvf~~L~~--Ei~~~~lL~lPlp~~~R~~i~~ 36 (192)
T PF05529_consen 2 SLQWSLVFGLLYA--EIAVLLLLVLPLPSPIRRKIFK 36 (192)
T ss_pred ccHHHHHHHHHHH--HHHHHHHHHHhCCcHHHHHHHH
Confidence 4678887666654 4567777787775444444333
No 19
>PF07782 DC_STAMP: DC-STAMP-like protein; InterPro: IPR012858 This group of sequences is similar to a region of the dendritic cell-specific transmembrane protein (DC-STAMP, Q9H295 from SWISSPROT). This is thought to be a novel receptor protein that shares no identity with other multimembrane-spanning proteins []. It is thought to have seven putative transmembrane regions [], two of which are found in the region featured in this family. DC-STAMP is also described as having potential N-linked glycosylation sites and a potential phosphorylation site for PKC [], but these are not conserved. ; GO: 0016021 integral to membrane
Probab=21.56 E-value=1.1e+02 Score=27.01 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheehhcccc
Q 021499 62 DTIIWFSISLLLVLAWGVGVFMLLYLPIRRYVLKKDISS 100 (311)
Q Consensus 62 dT~iW~liSlLLvLAWGvGilmLLylPirryv~rkdi~S 100 (311)
+...|+.+++++.++|..+++=---+=+||.|+-..+..
T Consensus 143 ~~~~~~~i~~l~~l~~ll~~le~Y~~RLR~~I~a~fyP~ 181 (191)
T PF07782_consen 143 DYSVYIQIGLLYLLLWLLVLLEPYALRLRRVICASFYPE 181 (191)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 345688899999999999887655566677776554443
No 20
>KOG4551 consensus GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=20.80 E-value=1.4e+02 Score=27.81 Aligned_cols=55 Identities=29% Similarity=0.587 Sum_probs=35.7
Q ss_pred HHHHHHHHHH-HHHHhhhhhhheehhccccceeEeecCceEEEecCCcccccccc-cc--------ccceecCchhhhhh
Q 021499 72 LLVLAWGVGV-FMLLYLPIRRYVLKKDISSRKLYVTPSEIVYKVSRPSFIPFWGK-TT--------NERHVPLSLVIDVI 141 (311)
Q Consensus 72 LLvLAWGvGi-lmLLylPirryv~rkdi~SrkLyvT~~~IVYKVsRPs~~P~~Gv-~r--------~Ek~VpL~~V~Dii 141 (311)
...++||+-+ .+|-||-++..|-+ -+|. ++|-+|+ +. .-+-.|+++|-|++
T Consensus 64 ~~~~~~~~~LsglL~~lH~~k~V~~-----Esl~--------------Ii~~lGIQ~~~sy~sgK~ss~fIpidkI~div 124 (184)
T KOG4551|consen 64 ARTLSWGCLLSGLLVMLHSRKFVKK-----ESLI--------------IIPTLGIQLETSYLSGKTSSRFIPIDKILDIV 124 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCc-----ceEE--------------EEcccceEEEeeeccCcccceeeEcchhHHhH
Confidence 5788999988 66667776655432 2333 3444555 21 12457999999999
Q ss_pred hhhc
Q 021499 142 IEQG 145 (311)
Q Consensus 142 ieQG 145 (311)
|-.|
T Consensus 125 inE~ 128 (184)
T KOG4551|consen 125 INEC 128 (184)
T ss_pred Hhhc
Confidence 9776
No 21
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=20.17 E-value=1.2e+02 Score=26.06 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhee
Q 021499 62 DTIIWFSISLLLVLAWGVGVFMLLYLPIRRYVL 94 (311)
Q Consensus 62 dT~iW~liSlLLvLAWGvGilmLLylPirryv~ 94 (311)
++..|.++++++++ +++-.+-.||=||...+-
T Consensus 9 ~~~~w~~i~f~il~-~iL~~~k~l~~pi~~~le 40 (167)
T PRK14475 9 NPEFWVGAGLLIFF-GILIALKVLPKALAGALD 40 (167)
T ss_pred chHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHH
Confidence 56679887766543 222223557888887665
Done!