Query 021499
Match_columns 311
No_of_seqs 34 out of 36
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 05:02:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ha4_A MIX1; TPR-like, helix-t 35.4 21 0.00071 30.6 2.5 19 177-195 91-109 (154)
2 2kl8_A OR15; structural genomi 28.1 38 0.0013 26.5 2.7 26 171-198 43-68 (85)
3 3o2p_E Cell division control p 25.6 32 0.0011 26.7 2.0 24 268-291 64-87 (88)
4 1iuy_A Cullin-3 homologue; win 23.3 39 0.0013 26.3 2.0 24 268-291 67-91 (92)
5 2do7_A Cullin-4B, CUL-4B; heli 21.0 45 0.0015 26.5 2.0 26 268-293 70-96 (101)
6 2hth_B Vacuolar protein sortin 18.7 58 0.002 26.7 2.2 44 96-147 35-78 (140)
7 3fzq_A Putative hydrolase; YP_ 13.6 98 0.0034 24.9 2.4 10 291-300 219-228 (274)
8 3p73_A MHC RFP-Y class I alpha 13.5 1.7E+02 0.0059 25.3 4.1 27 151-177 2-38 (275)
9 2kix_A BM2 protein; channel, t 12.7 1.6E+02 0.0055 19.6 2.8 16 67-82 13-28 (33)
10 3r4c_A Hydrolase, haloacid deh 12.3 94 0.0032 25.2 1.9 24 270-300 199-222 (268)
No 1
>3ha4_A MIX1; TPR-like, helix-turn-helix, unknown function; 2.40A {Leishmania major}
Probab=35.39 E-value=21 Score=30.60 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=17.2
Q ss_pred ecChhhHHHHHHHHHHHhh
Q 021499 177 VDNPVLLRKVIVTEAAKVI 195 (311)
Q Consensus 177 V~np~~fRk~Vl~~~s~~~ 195 (311)
|+||+.+||-||+|+....
T Consensus 91 vadpd~~rkevlmqllnvk 109 (154)
T 3ha4_A 91 VADPDEMRKEVLMQLLNVK 109 (154)
T ss_dssp CSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhh
Confidence 7999999999999999664
No 2
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=28.13 E-value=38 Score=26.49 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=23.2
Q ss_pred ceeEeeecChhhHHHHHHHHHHHhhhcc
Q 021499 171 ELQVQGVDNPVLLRKVIVTEAAKVIQNS 198 (311)
Q Consensus 171 ~lqi~GV~np~~fRk~Vl~~~s~~~~~~ 198 (311)
+|.|+|| |.+.||-.-.+++++.+++
T Consensus 43 eiritgv--peqvrkelakeaerlakef 68 (85)
T 2kl8_A 43 EIRITGV--PEQVRKELAKEAERLAKEF 68 (85)
T ss_dssp EEEEESC--CHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecC--hHHHHHHHHHHHHHHHHhc
Confidence 6888998 8999999999999998766
No 3
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=25.63 E-value=32 Score=26.66 Aligned_cols=24 Identities=21% Similarity=0.110 Sum_probs=19.1
Q ss_pred HHHHHHHhhhccCCCcccceEEEE
Q 021499 268 KVCIILIKLFSFQPTESFPLYIYC 291 (311)
Q Consensus 268 KriE~Lle~~~~~~~~~~~~~~~~ 291 (311)
|+||.||++.+-++.+.-..|.|+
T Consensus 64 k~IE~LIekeYleR~~~~~~y~Yl 87 (88)
T 3o2p_E 64 RAIDSLIQKGYLQRGDDGESYAYL 87 (88)
T ss_dssp HHHHHHHHTTSEEECTTSSEEEEC
T ss_pred HHHHHHHhhhHHhcCCCCCeEEee
Confidence 689999999777666554888885
No 4
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=23.28 E-value=39 Score=26.32 Aligned_cols=24 Identities=25% Similarity=0.144 Sum_probs=19.9
Q ss_pred HHHHHHHhhhccCCCcc-cceEEEE
Q 021499 268 KVCIILIKLFSFQPTES-FPLYIYC 291 (311)
Q Consensus 268 KriE~Lle~~~~~~~~~-~~~~~~~ 291 (311)
|+||.||++.+-++.+. -..|.|+
T Consensus 67 k~IE~LIereYleR~~~d~~~y~Y~ 91 (92)
T 1iuy_A 67 KRIEGLIEREYLARTPEDRKVYTYV 91 (92)
T ss_dssp HHHHHHHHTTSEEECSSCSSEEEEC
T ss_pred HHHHHHhhhhhhhcCCCCCCeeEec
Confidence 89999999998888764 4678885
No 5
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.02 E-value=45 Score=26.53 Aligned_cols=26 Identities=23% Similarity=0.092 Sum_probs=21.4
Q ss_pred HHHHHHHhhhccCCCcc-cceEEEEee
Q 021499 268 KVCIILIKLFSFQPTES-FPLYIYCVS 293 (311)
Q Consensus 268 KriE~Lle~~~~~~~~~-~~~~~~~~~ 293 (311)
|+||.||++.+-++.+. -..|.|..+
T Consensus 70 k~IE~LIereYleR~~~d~~~y~YlA~ 96 (101)
T 2do7_A 70 KRIESLIDRDYMERDKENPNQYNYIAS 96 (101)
T ss_dssp HHHHHHHHTTSEEECSSCTTEEEECCC
T ss_pred HHHHHHhhhhHHhcCCCCCCeEEEecC
Confidence 79999999988888764 578999753
No 6
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=18.65 E-value=58 Score=26.69 Aligned_cols=44 Identities=7% Similarity=0.132 Sum_probs=31.7
Q ss_pred hccccceeEeecCceEEEecCCccccccccccccceecCchhhhhhhhhchh
Q 021499 96 KDISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCL 147 (311)
Q Consensus 96 kdi~SrkLyvT~~~IVYKVsRPs~~P~~Gv~r~Ek~VpL~~V~DiiieQG~L 147 (311)
..+.+-.||||.+-|+| +.... + ..=-.+||..|.++=++|+-+
T Consensus 35 ~~~k~G~l~LTshRli~-~d~~~--~-----~~s~~lpl~~v~~~e~~~~~f 78 (140)
T 2hth_B 35 IKFDAGTLLLSTHRLIW-RDQKN--H-----ECCMAILLSQIVFIEEQAAGI 78 (140)
T ss_dssp SCCCCEEEEEESSEEEE-EETTC--C-----SCCEEEEGGGEEEEEEECCTT
T ss_pred CCCcCCEEEEecCEEEE-ecCCC--C-----ceEEEEEhHHeeeeeeecccc
Confidence 45688899999999998 32211 0 011268999999999999864
No 7
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=13.63 E-value=98 Score=24.89 Aligned_cols=10 Identities=40% Similarity=0.816 Sum_probs=8.6
Q ss_pred EeeecCCCCC
Q 021499 291 CVSFGDSTNP 300 (311)
Q Consensus 291 ~~~~~~~~~~ 300 (311)
|+.|||+.|-
T Consensus 219 ~i~~GD~~ND 228 (274)
T 3fzq_A 219 TICFGDGQND 228 (274)
T ss_dssp EEEECCSGGG
T ss_pred EEEECCChhH
Confidence 7889999884
No 8
>3p73_A MHC RFP-Y class I alpha chain; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, immune system; HET: 16A; 1.32A {Gallus gallus} PDB: 3p77_A*
Probab=13.52 E-value=1.7e+02 Score=25.32 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=22.7
Q ss_pred eceeEEEEeeeecCCCCC----------CCceeEeee
Q 021499 151 YGIHTFRVESIARGKAAP----------VDELQVQGV 177 (311)
Q Consensus 151 fGihslriEsig~~k~~p----------~D~lqi~GV 177 (311)
||-||||---.+.++|+| +||+|+..-
T Consensus 2 ~g~HSL~y~~T~~s~~~~~~p~f~~vg~vDd~qf~~y 38 (275)
T 3p73_A 2 FGSHSLRYFLTGMTDPGPGMPRFVIVGYVDDKIFGTY 38 (275)
T ss_dssp CCEEEEEEEEEEESCCCTTCCSEEEEEEETTEEEEEE
T ss_pred CcccEEEEEEEEECCCCCCCCeEEEEEEECCeEEEEE
Confidence 789999999999998875 788887764
No 9
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=12.72 E-value=1.6e+02 Score=19.64 Aligned_cols=16 Identities=38% Similarity=0.816 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 021499 67 FSISLLLVLAWGVGVF 82 (311)
Q Consensus 67 ~liSlLLvLAWGvGil 82 (311)
...|+|-+.||-+|-|
T Consensus 13 filsalhf~awtighl 28 (33)
T 2kix_A 13 FILSALHFIAWTIGHL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4568888999999965
No 10
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=12.28 E-value=94 Score=25.18 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=14.7
Q ss_pred HHHHHhhhccCCCcccceEEEEeeecCCCCC
Q 021499 270 CIILIKLFSFQPTESFPLYIYCVSFGDSTNP 300 (311)
Q Consensus 270 iE~Lle~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (311)
|+.|++...-.+.+ |+.|||+.|-
T Consensus 199 l~~l~~~lgi~~~~-------~ia~GD~~ND 222 (268)
T 3r4c_A 199 LSLFADYYRVKVSE-------IMACGDGGND 222 (268)
T ss_dssp HHHHHHHTTCCGGG-------EEEEECSGGG
T ss_pred HHHHHHHcCCCHHH-------EEEECCcHHh
Confidence 44444444444444 7889999884
Done!