BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021501
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 120/267 (44%), Positives = 154/267 (57%), Gaps = 11/267 (4%)
Query: 24 VEAYASLLDRITALPGQPQVGFQQYSGYVTVDEKKQRALFYYFAEAETDPASKPLVLWLN 83
VE DRI LPGQP V F YSGY+TVDE R+LFY EA D PLVLWLN
Sbjct: 1 VEPSGHAADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLN 60
Query: 84 GGPGCSSLGVGAFSENGPFR--PNGQVLVRNEYSWNREANMLFLETPIGVGFSYSKDASS 141
GGPGCSS+ GA E G FR P G LV NEY WN+ AN+LFL++P GVGFSY+ +S
Sbjct: 61 GGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSD 120
Query: 142 YQGVGDKITARDNLVFLKNWFLKFPQYRNRSLFITGESYAGHYIPQLADLMLEFNKKEEL 201
GD TA D+ FL WF +FP Y+ R +I GESYAGHY+P+L+ L+ K +
Sbjct: 121 IYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV--HRSKNPV 178
Query: 202 FNLKGIALGNPVLEFATDFNSRAEFFWSHGLISDATYTMFTSFCNYSRYVSEYYRGSVSP 261
NLKG +GN +++ D+ EF+W+HG++SD TY C + ++ SP
Sbjct: 179 INLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHP------SP 232
Query: 262 ICSRVMSLVSRETSRFVDKYDVTLDVC 288
C + + E +D Y + VC
Sbjct: 233 ACDAATDVATAEQGN-IDMYSLYTPVC 258
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 234 bits (597), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 120/267 (44%), Positives = 154/267 (57%), Gaps = 11/267 (4%)
Query: 24 VEAYASLLDRITALPGQPQVGFQQYSGYVTVDEKKQRALFYYFAEAETDPASKPLVLWLN 83
VE DRI LPGQP V F YSGY+TVDE R+LFY EA D PLVLWLN
Sbjct: 1 VEPSGHAADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLN 60
Query: 84 GGPGCSSLGVGAFSENGPFR--PNGQVLVRNEYSWNREANMLFLETPIGVGFSYSKDASS 141
GGPGCSS+ GA E G FR P G LV NEY WN+ AN+LFL++P GVGFSY+ +S
Sbjct: 61 GGPGCSSVAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSD 120
Query: 142 YQGVGDKITARDNLVFLKNWFLKFPQYRNRSLFITGESYAGHYIPQLADLMLEFNKKEEL 201
GD TA D+ FL WF +FP Y+ R +I GESYAGHY+P+L+ L+ K +
Sbjct: 121 IYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV--HRSKNPV 178
Query: 202 FNLKGIALGNPVLEFATDFNSRAEFFWSHGLISDATYTMFTSFCNYSRYVSEYYRGSVSP 261
NLKG +GN +++ D+ EF+W+HG++SD TY C + ++ SP
Sbjct: 179 INLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHP------SP 232
Query: 262 ICSRVMSLVSRETSRFVDKYDVTLDVC 288
C + + E +D Y + VC
Sbjct: 233 ACDAATDVATAEQGN-IDMYSLYTPVC 258
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 233 bits (594), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 118/259 (45%), Positives = 152/259 (58%), Gaps = 11/259 (4%)
Query: 32 DRITALPGQPQVGFQQYSGYVTVDEKKQRALFYYFAEAETDPASKPLVLWLNGGPGCSSL 91
DRI LPGQP V F YSGY+TVDE R+LFY EA D PLVLWLNGGPGCSS+
Sbjct: 4 DRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSV 63
Query: 92 GVGAFSENGPFR--PNGQVLVRNEYSWNREANMLFLETPIGVGFSYSKDASSYQGVGDKI 149
GA E G FR P G LV NEY WN+ AN+LFL++P GVGFSY+ +S GD
Sbjct: 64 AYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 123
Query: 150 TARDNLVFLKNWFLKFPQYRNRSLFITGESYAGHYIPQLADLMLEFNKKEELFNLKGIAL 209
TA D+ FL WF +FP Y+ R +I GESYAGHY+P+L+ L+ K + NLKG +
Sbjct: 124 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV--HRSKNPVINLKGFMV 181
Query: 210 GNPVLEFATDFNSRAEFFWSHGLISDATYTMFTSFCNYSRYVSEYYRGSVSPICSRVMSL 269
GN +++ D+ EF+W+HG++SD TY C + ++ SP C +
Sbjct: 182 GNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHP------SPACDAATDV 235
Query: 270 VSRETSRFVDKYDVTLDVC 288
+ E +D Y + VC
Sbjct: 236 ATAEQGN-IDMYSLYTPVC 253
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/259 (45%), Positives = 152/259 (58%), Gaps = 11/259 (4%)
Query: 32 DRITALPGQPQVGFQQYSGYVTVDEKKQRALFYYFAEAETDPASKPLVLWLNGGPGCSSL 91
DRI LPGQP V F YSGY+TVDE R+LFY EA D PLVLWLNGGPGCSS+
Sbjct: 5 DRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSV 64
Query: 92 GVGAFSENGPFR--PNGQVLVRNEYSWNREANMLFLETPIGVGFSYSKDASSYQGVGDKI 149
GA E G FR P G LV NEY WN+ AN+LFL++P GVGFSY+ +S GD
Sbjct: 65 AYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 124
Query: 150 TARDNLVFLKNWFLKFPQYRNRSLFITGESYAGHYIPQLADLMLEFNKKEELFNLKGIAL 209
TA D+ FL WF +FP Y+ R +I GESYAGHY+P+L+ L+ K + NLKG +
Sbjct: 125 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV--HRSKNPVINLKGFMV 182
Query: 210 GNPVLEFATDFNSRAEFFWSHGLISDATYTMFTSFCNYSRYVSEYYRGSVSPICSRVMSL 269
GN +++ D+ EF+W+HG++SD TY C + ++ SP C +
Sbjct: 183 GNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHP------SPACDAATDV 236
Query: 270 VSRETSRFVDKYDVTLDVC 288
+ E +D Y + VC
Sbjct: 237 ATAEQGN-IDMYSLYTPVC 254
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 146/261 (55%), Gaps = 14/261 (5%)
Query: 32 DRITALPGQPQ-VGFQQYSGYVTVDEKKQRALFYYFAEAETDPASKP-LVLWLNGGPGCS 89
DRI LPGQP V F Y GYVT+D+ RAL+Y+F EA+T + LVLWLNGGPGCS
Sbjct: 8 DRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPGCS 67
Query: 90 SLGVGAFSENGPFR--PNGQVLVRNEYSWNREANMLFLETPIGVGFSYSKDASSYQGVGD 147
S+G+GA E G FR NG+ L+ NEY+WN+ AN+LF E+P GVGFSYS + SS +GD
Sbjct: 68 SIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYS-NTSSDLSMGD 126
Query: 148 KITARDNLVFLKNWFLKFPQYRNRSLFITGESYAGHYIPQLADLMLEFNKKEELFNLKGI 207
A+D FL WF +FP Y R +I GES GH+IPQL+ ++ N +G+
Sbjct: 127 DKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNRNNSPFINFQGL 184
Query: 208 ALGNPVLEFATDFNSRAEFFWSHGLISDATYTMFTSFCNYSRYVSEYYRGSVSPICSRVM 267
+ + + D E +W HGLISD T C + ++ +P C+ V
Sbjct: 185 LVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHP------TPECTEVW 238
Query: 268 SLVSRETSRFVDKYDVTLDVC 288
+ E ++ Y + C
Sbjct: 239 NKALAEQGN-INPYTIYTPTC 258
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 135/217 (62%), Gaps = 12/217 (5%)
Query: 32 DRITALPG-QPQVGFQQYSGYVTVDEKKQRALFYYFAEAETDPASKPLVLWLNGGPGCSS 90
D I LPG Q F+QYSGY+ K L Y+F E++ DP + P+VLWLNGGPGCSS
Sbjct: 5 DEIQRLPGLAKQPSFRQYSGYLKSSGSKH--LHYWFVESQKDPENSPVVLWLNGGPGCSS 62
Query: 91 LGVGAFSENGPF--RPNGQVLVRNEYSWNREANMLFLETPIGVGFSYSKDASSYQGVGDK 148
L G +E+GPF +P+G L N YSWN AN+L+LE+P GVGFSYS D + D
Sbjct: 63 LD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDD--KFYATNDT 119
Query: 149 ITARDNLVFLKNWFLKFPQYRNRSLFITGESYAGHYIPQLADLMLEFNKKEELFNLKGIA 208
A+ N L+++F FP+Y+N LF+TGESYAG YIP LA L+++ + NL+G+A
Sbjct: 120 EVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ----DPSMNLQGLA 175
Query: 209 LGNPVLEFATDFNSRAEFFWSHGLISDATYTMFTSFC 245
+GN + + + NS F + HGL+ + ++ + C
Sbjct: 176 VGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC 212
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 135/217 (62%), Gaps = 12/217 (5%)
Query: 32 DRITALPG-QPQVGFQQYSGYVTVDEKKQRALFYYFAEAETDPASKPLVLWLNGGPGCSS 90
D I LPG Q F+QYSGY+ K L Y+F E++ DP + P+VLWLNGGPGCSS
Sbjct: 7 DEIQRLPGLAKQPSFRQYSGYLKGSGSKH--LHYWFVESQKDPENSPVVLWLNGGPGCSS 64
Query: 91 LGVGAFSENGPF--RPNGQVLVRNEYSWNREANMLFLETPIGVGFSYSKDASSYQGVGDK 148
L G +E+GPF +P+G L N YSWN AN+L+LE+P GVGFSYS D + D
Sbjct: 65 LD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDD--KFYATNDT 121
Query: 149 ITARDNLVFLKNWFLKFPQYRNRSLFITGESYAGHYIPQLADLMLEFNKKEELFNLKGIA 208
A+ N L+++F FP+Y+N LF+TGESYAG YIP LA L+++ + NL+G+A
Sbjct: 122 EVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ----DPSMNLQGLA 177
Query: 209 LGNPVLEFATDFNSRAEFFWSHGLISDATYTMFTSFC 245
+GN + + + NS F + HGL+ + ++ + C
Sbjct: 178 VGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC 214
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 110/184 (59%), Gaps = 22/184 (11%)
Query: 47 QYSGYVTVDEKKQRALFYYFAEAETDPASKPLVLWLNGGPGCSSLGVGAFSENGP----- 101
QY+GY+ V+++ + F+ F E+ DPA P++LWLNGGPGCSSL G F E GP
Sbjct: 16 QYTGYLDVEDEDKHFFFWTF-ESRNDPAKDPVILWLNGGPGCSSL-TGLFFELGPSSIGP 73
Query: 102 -FRPNGQVLVRNEYSWNREANMLFLETPIGVGFSYSKDASSYQGVGDKITA-RDNLVFLK 159
+P G N YSWN A ++FL+ P+ VGFSYS + GV + + A +D FL+
Sbjct: 74 DLKPIG-----NPYSWNSNATVIFLDQPVNVGFSYSGSS----GVSNTVAAGKDVYNFLE 124
Query: 160 NWFLKFPQYRNR--SLFITGESYAGHYIPQLADLMLEFNKKEELFNLKGIALGNPVLEFA 217
+F +FP+Y N+ I GESYAGHYIP A +L + K+ FNL + +GN + +
Sbjct: 125 LFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEIL--SHKDRNFNLTSVLIGNGLTDPL 182
Query: 218 TDFN 221
T +N
Sbjct: 183 TQYN 186
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 107/179 (59%), Gaps = 12/179 (6%)
Query: 47 QYSGYVTVDEKKQRALFYYFAEAETDPASKPLVLWLNGGPGCSSLGVGAFSENGPFRPNG 106
QY+GY+ V+++ + F+ F E+ DPA P++LWLNGGPGCSSL G F GP
Sbjct: 16 QYTGYLDVEDEDKHFFFWTF-ESRNDPAKDPVILWLNGGPGCSSL-TGLFFALGPSSIGP 73
Query: 107 QVL-VRNEYSWNREANMLFLETPIGVGFSYSKDASSYQGVGDKITA-RDNLVFLKNWFLK 164
+ + N YSWN A ++FL+ P+ VGFSYS + GV + + A +D FL+ +F +
Sbjct: 74 DLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSS----GVSNTVAAGKDVYNFLELFFDQ 129
Query: 165 FPQYRNR--SLFITGESYAGHYIPQLADLMLEFNKKEELFNLKGIALGNPVLEFATDFN 221
FP+Y N+ I G SYAGHYIP A +L + K+ FNL + +GN + + T +N
Sbjct: 130 FPEYVNKGQDFHIAGASYAGHYIPVFASEIL--SHKDRNFNLTSVLIGNGLTDPLTQYN 186
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 112/204 (54%), Gaps = 26/204 (12%)
Query: 30 LLDRITALPGQPQVGFQQYSGYV-----TVDEKKQRALFYYFAEAETDPAS----KPLVL 80
LL ++ +P + Q ++G++ DE+ L Y+F + + ++ +PL++
Sbjct: 13 LLPGLSEVPDPSNIP-QMHAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLII 71
Query: 81 WLNGGPGCSSLGVGAFSENGPFRPNGQ-VLVRNEYSWNREANMLFLETPIGVGFSYSKDA 139
WLNGGPGCSS+ GA E+GPFR N L NE SW + ++LF++ P G GFS ++
Sbjct: 72 WLNGGPGCSSMD-GALVESGPFRVNSDGKLYLNEGSWISKGDLLFIDQPTGTGFSVEQNK 130
Query: 140 SSYQGVGDKITARDNLV--------FLKNWFLKFPQYRNRSLFITGESYAGHYIPQLADL 191
+G DK ++L FL+N+F FP+ R + ++GESYAG YIP A+
Sbjct: 131 D--EGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANA 188
Query: 192 MLEFNK----KEELFNLKGIALGN 211
+L NK + ++LK + +GN
Sbjct: 189 ILNHNKFSKIDGDTYDLKALLIGN 212
>pdb|1OAH|A Chain A, Cytochrome C Nitrite Reductase From Desulfovibrio
Desulfuricans Atcc 27774: The Relevance Of The Two
Calcium Sites In The Structure Of The Catalytic Subunit
(Nrfa).
pdb|1OAH|B Chain B, Cytochrome C Nitrite Reductase From Desulfovibrio
Desulfuricans Atcc 27774: The Relevance Of The Two
Calcium Sites In The Structure Of The Catalytic Subunit
(Nrfa)
Length = 519
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 64 YYFAEAETDPASKPLVLWLNG 84
YYF + PA+KP+ W NG
Sbjct: 237 YYFTHKDNGPAAKPVFPWDNG 257
>pdb|3UNB|A Chain A, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|O Chain O, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|CC Chain c, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|QQ Chain q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|A Chain A, Mouse Constitutive 20s Proteasome
pdb|3UNE|O Chain O, Mouse Constitutive 20s Proteasome
pdb|3UNE|CC Chain c, Mouse Constitutive 20s Proteasome
pdb|3UNE|QQ Chain q, Mouse Constitutive 20s Proteasome
pdb|3UNF|A Chain A, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|O Chain O, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|A Chain A, Mouse 20s Immunoproteasome
pdb|3UNH|O Chain O, Mouse 20s Immunoproteasome
Length = 234
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 39 GQPQVGFQQYSGYVTVDEKKQRALFY-YFAEAETDPASKPLVLWLNG-GP 86
G P VG + +G V EKKQ+++ Y + + +P +K + L +G GP
Sbjct: 32 GAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGP 81
>pdb|1IRU|B Chain B, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
pdb|1IRU|P Chain P, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
Length = 233
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 39 GQPQVGFQQYSGYVTVDEKKQRALFY-YFAEAETDPASKPLVLWLNG-GP 86
G P VG + +G V EKKQ+++ Y + + +P +K + L +G GP
Sbjct: 31 GAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGP 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,257,382
Number of Sequences: 62578
Number of extensions: 395925
Number of successful extensions: 836
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 15
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)