Query 021504
Match_columns 311
No_of_seqs 134 out of 948
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 03:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2606 OTU (ovarian tumor)-li 100.0 3.9E-35 8.4E-40 276.3 -6.8 279 1-304 2-300 (302)
2 PF02338 OTU: OTU-like cystein 99.9 3.2E-24 7E-29 174.9 8.5 112 170-296 1-121 (121)
3 KOG3288 OTU-like cysteine prot 99.7 3.1E-18 6.8E-23 159.8 7.4 126 163-304 109-235 (307)
4 PF10275 Peptidase_C65: Peptid 99.5 4.7E-13 1E-17 123.2 13.1 99 201-300 138-243 (244)
5 KOG2605 OTU (ovarian tumor)-li 99.4 9.9E-14 2.1E-18 136.2 5.1 94 159-263 213-309 (371)
6 KOG3991 Uncharacterized conser 99.2 8.5E-11 1.9E-15 108.9 10.2 98 201-301 155-255 (256)
7 COG5539 Predicted cysteine pro 98.9 2.2E-10 4.8E-15 109.1 -0.5 125 163-300 170-305 (306)
8 COG5539 Predicted cysteine pro 98.8 3E-09 6.6E-14 101.4 2.2 114 168-301 116-231 (306)
9 PF05415 Peptidase_C36: Beet n 92.3 0.42 9.1E-06 39.4 5.9 95 169-298 3-103 (104)
10 PF05381 Peptidase_C21: Tymovi 45.7 1.2E+02 0.0027 25.5 7.4 91 172-298 2-94 (104)
11 PRK09784 hypothetical protein; 34.5 22 0.00047 34.7 1.5 21 161-181 197-217 (417)
12 PF05412 Peptidase_C33: Equine 34.4 28 0.00061 29.5 1.9 16 170-185 5-20 (108)
13 KOG2605 OTU (ovarian tumor)-li 31.4 21 0.00046 36.0 0.9 43 221-263 3-45 (371)
14 PF07418 PCEMA1: Acidic phosph 27.0 41 0.00089 32.8 1.9 39 13-56 2-45 (282)
15 KOG2606 OTU (ovarian tumor)-li 26.1 43 0.00093 33.0 1.9 25 201-225 188-212 (302)
16 cd03346 eu_TrpOH Eukaryotic tr 22.1 42 0.00091 32.9 1.0 91 155-259 113-212 (287)
17 cd00361 arom_aa_hydroxylase Bi 21.6 19 0.00041 33.9 -1.4 91 155-259 53-153 (221)
18 TIGR01270 Trp_5_monoox tryptop 20.2 44 0.00095 34.8 0.8 88 158-259 245-341 (464)
No 1
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.9e-35 Score=276.32 Aligned_cols=279 Identities=27% Similarity=0.324 Sum_probs=197.0
Q ss_pred CeeeccccccccceEEeccccccccccceeeeeecCCCceeeeecccCcccccccceeeEeecCCccccccccccccccc
Q 021504 1 MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPG 80 (311)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (311)
|++..++..|.+|...|. +|-+.+-......+..+..|.+.. ++.|+.|.+....++. -+-|++.+.++++.
T Consensus 2 ~~~~~~~~~~~~~e~iLa----RHr~E~keLq~ki~~mKk~a~k~~-k~~rK~~~~~~~~le~---el~qkH~kEL~~~~ 73 (302)
T KOG2606|consen 2 MTCMDSEQDEESNEEILA----RHRRERKELQAKITSMKKAAPKGN-KKKRKELTEDIAKLEK---ELSQKHKKELEKLK 73 (302)
T ss_pred cCCccchhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHhhhhcc-HHHHHHHHHHHHHHHh---HHHHHHHHHHHhhc
Confidence 678889999999999998 999999999999999999999887 8999999986555554 24579999999999
Q ss_pred cc-------cCcceeeeeccCCcc-cccccCCC--ccccCC---CCCCcchheeceecccCchhhhhhhhccccCCcccc
Q 021504 81 LT-------KPSMKMRLLVPSQGV-LPKLKLNA--GPIDWP---KGCASAGLICGLLVCYSSSKAHAEAADEKEDGEEDY 147 (311)
Q Consensus 81 ~~-------~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (311)
++ +..+...+..|-.++ +.+++..- +.++-. -+-.-.....-.+++.++.. -.+..
T Consensus 74 ~~~~~e~~~~e~~~~s~l~~~a~~~~~~~ee~P~~sKa~k~r~k~r~e~r~~e~~~~~e~~~~~---~~~~~-------- 142 (302)
T KOG2606|consen 74 LINESEVTPKENLIESVLSPIANMSLENKEETPRQSKARKRREKKRKEERKREAEKIAEEESLS---NQADA-------- 142 (302)
T ss_pred ccCccccCccccchhhhhcccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCch--------
Confidence 74 444555555555544 34444200 001100 01011111111122221110 00000
Q ss_pred cchhhcccccccccCCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhcccc-
Q 021504 148 DLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEG- 226 (311)
Q Consensus 148 ~~~~~~~~~g~~~~~gL~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fie~- 226 (311)
............-..||.+++||+||+|||+||+|||..+++...+.+.||++.+++||.++.|++--..+..++++.+
T Consensus 143 k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~ 222 (302)
T KOG2606|consen 143 KSMEKEKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLGP 222 (302)
T ss_pred hhhHHHHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCCH
Confidence 0001111222333468999999999999999999999999887778788888888888888777654334445555543
Q ss_pred -CHHHHHHHhcCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEc----CCC-cceeee
Q 021504 227 -DFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYH----GFG-HYDALQ 300 (311)
Q Consensus 227 -dfdeYl~~M~k~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Yh----g~g-HYDSL~ 300 (311)
+|++||++|++++.|||++||.|+|++|++||+||+.+ + .+.+||++++.++||.|+|| +.| ||||+.
T Consensus 223 ~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~----~--p~~~~geey~kd~pL~lvY~rH~y~LGeHYNS~~ 296 (302)
T KOG2606|consen 223 EDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQAD----G--PILEYGEEYGKDKPLILVYHRHAYGLGEHYNSVT 296 (302)
T ss_pred HHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecC----C--CceeechhhCCCCCeeeehHHhHHHHHhhhcccc
Confidence 79999999999999999999999999999999999975 2 26789999987899999996 344 999998
Q ss_pred cCCC
Q 021504 301 NLGH 304 (311)
Q Consensus 301 ~~~~ 304 (311)
....
T Consensus 297 ~~~n 300 (302)
T KOG2606|consen 297 PLKN 300 (302)
T ss_pred cccc
Confidence 7654
No 2
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.90 E-value=3.2e-24 Score=174.89 Aligned_cols=112 Identities=39% Similarity=0.689 Sum_probs=88.3
Q ss_pred CCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHh-cChhhhhhccccCHHHHHHHhcCCCCcCCHHHHH
Q 021504 170 PGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFI-KRREETEWFIEGDFDLYVSQIRKPHVWGGEPELL 248 (311)
Q Consensus 170 pgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~-~n~d~fe~fie~dfdeYl~~M~k~gtWGG~lEL~ 248 (311)
||||||||||||+||+...+. .+..|.+||+.++++|+ .+++.|++|+.++ +|+++++|||++||+
T Consensus 1 pgDGnClF~Avs~~l~~~~~~-------~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~ 67 (121)
T PF02338_consen 1 PGDGNCLFRAVSDQLYGDGGG-------SEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQ 67 (121)
T ss_dssp -SSTTHHHHHHHHHHCTT-SS-------STTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHH
T ss_pred CCCccHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHH
Confidence 799999999999999854311 13568999999999999 9999999998766 999999999999999
Q ss_pred HHHHhcCCCEEEEeecCCCCCceEEEEcCC---CCCCCCeEEEEEcC-----CCcc
Q 021504 249 MASHVLRMPITVYMHDKDAGGLISIAEYGQ---EYGKEKPIRVLYHG-----FGHY 296 (311)
Q Consensus 249 AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~---e~~~~~pI~L~Yhg-----~gHY 296 (311)
|+|++|+++|+||+... +.......+.. +....++|.++|++ .+||
T Consensus 68 a~a~~~~~~I~v~~~~~--~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy 121 (121)
T PF02338_consen 68 ALANVLNRPIIVYSSSD--GDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY 121 (121)
T ss_dssp HHHHHHTSEEEEECETT--TBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred HHHHHhCCeEEEEEcCC--CCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence 99999999999998632 22222222222 23457899999997 7798
No 3
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.1e-18 Score=159.83 Aligned_cols=126 Identities=25% Similarity=0.384 Sum_probs=109.8
Q ss_pred CcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhh-hhccccCHHHHHHHhcCCCCc
Q 021504 163 DYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREET-EWFIEGDFDLYVSQIRKPHVW 241 (311)
Q Consensus 163 gL~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~f-e~fie~dfdeYl~~M~k~gtW 241 (311)
-+.++.||.|++|||+||++.+....+. -..+||+.++..+..|++.| +++++..-.+||.||+++..|
T Consensus 109 vl~~~vvp~DNSCLF~ai~yv~~k~~~~----------~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsW 178 (307)
T KOG3288|consen 109 VLSRRVVPDDNSCLFTAIAYVIFKQVSN----------RPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSW 178 (307)
T ss_pred eeEEEeccCCcchhhhhhhhhhcCccCC----------CcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHcccccc
Confidence 5888999999999999999988742211 13689999999999999988 678889999999999999999
Q ss_pred CCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCC
Q 021504 242 GGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGH 304 (311)
Q Consensus 242 GG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~~~~~ 304 (311)
||-+||..||+.|++.|.|++.+ + ..|..||++.+....+.|.|.|. |||+|.+...
T Consensus 179 GGaIElsILS~~ygveI~vvDiq--t---~rid~fged~~~~~rv~llydGI-HYD~l~m~~~ 235 (307)
T KOG3288|consen 179 GGAIELSILSDYYGVEICVVDIQ--T---VRIDRFGEDKNFDNRVLLLYDGI-HYDPLAMNEF 235 (307)
T ss_pred CceEEeeeehhhhceeEEEEecc--e---eeehhcCCCCCCCceEEEEeccc-ccChhhhccC
Confidence 99999999999999999999764 2 35889998877788999999998 9999988764
No 4
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=99.48 E-value=4.7e-13 Score=123.18 Aligned_cols=99 Identities=21% Similarity=0.301 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhcChhhhhhccc----cCHHHHH-HHhcCCCCcCCHHHHHHHHHhcCCCEEEEeecCC-CCCceEEE
Q 021504 201 LADDLRAKVADEFIKRREETEWFIE----GDFDLYV-SQIRKPHVWGGEPELLMASHVLRMPITVYMHDKD-AGGLISIA 274 (311)
Q Consensus 201 ~h~eLR~~vvdy~~~n~d~fe~fie----~dfdeYl-~~M~k~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~-s~g~i~I~ 274 (311)
....+|-.+..||..|.++|++|++ .+|++|| +.+...+.-.+|+.+.|||++|+++|.|+..|+. ++..+...
T Consensus 138 iV~flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~ 217 (244)
T PF10275_consen 138 IVIFLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRH 217 (244)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEE
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccc
Confidence 3457887888888899999999997 5699999 4677788999999999999999999999999875 44444555
Q ss_pred EcCCCC-CCCCeEEEEEcCCCcceeee
Q 021504 275 EYGQEY-GKEKPIRVLYHGFGHYDALQ 300 (311)
Q Consensus 275 ~yG~e~-~~~~pI~L~Yhg~gHYDSL~ 300 (311)
.+.++. +..+.|.|+|..+ |||.++
T Consensus 218 ~~~~~~~~~~~~i~LLyrpg-HYdIly 243 (244)
T PF10275_consen 218 EFPPDNESQEPQITLLYRPG-HYDILY 243 (244)
T ss_dssp EES-SSTTSS-SEEEEEETB-EEEEEE
T ss_pred cCCCccCCCCCEEEEEEcCC-cccccc
Confidence 664221 3467899999885 999986
No 5
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=9.9e-14 Score=136.21 Aligned_cols=94 Identities=26% Similarity=0.348 Sum_probs=84.1
Q ss_pred cccCCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhccccCHHHHHHHhcCC
Q 021504 159 KVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKP 238 (311)
Q Consensus 159 ~~~~gL~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fie~dfdeYl~~M~k~ 238 (311)
....|+.++.|.+||||+|||+|+|+|.+ ++.|+..|+++++++..+++.|+.|+.++|.+|++.++++
T Consensus 213 ~~~~g~e~~Kv~edGsC~fra~aDQvy~d-----------~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~ 281 (371)
T KOG2605|consen 213 KKHFGFEYKKVVEDGSCLFRALADQVYGD-----------DEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRAD 281 (371)
T ss_pred HHHhhhhhhhcccCCchhhhccHHHhhcC-----------HHHHHHHHHHHHHHHhhcccccccccccchhhcccccccC
Confidence 34468999999999999999999999953 4789999999999999999999999999999999999999
Q ss_pred CCcCCHHHHHHHHH---hcCCCEEEEee
Q 021504 239 HVWGGEPELLMASH---VLRMPITVYMH 263 (311)
Q Consensus 239 gtWGG~lEL~AlA~---ll~~~I~Vy~~ 263 (311)
+.||+|+|+||+|. ....++.+.+.
T Consensus 282 ~~~gnhie~Qa~a~~~~~~~~~~~~~~~ 309 (371)
T KOG2605|consen 282 GEPGNHIEQQAAADIYEEIEKPLNITSF 309 (371)
T ss_pred CCCcchHHHhhhhhhhhhccccceeecc
Confidence 99999999999995 55566666654
No 6
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=8.5e-11 Score=108.88 Aligned_cols=98 Identities=19% Similarity=0.251 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHHHhcC-CCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcC
Q 021504 201 LADDLRAKVADEFIKRREETEWFIEG--DFDLYVSQIRK-PHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYG 277 (311)
Q Consensus 201 ~h~eLR~~vvdy~~~n~d~fe~fie~--dfdeYl~~M~k-~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG 277 (311)
.+.++|-.+..+++.|+|+|++|+++ ++++||.+--. ..+-.||++|.||++.+++.|+|...|+.+++...-+.|.
T Consensus 155 iV~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fp 234 (256)
T KOG3991|consen 155 IVMYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFP 234 (256)
T ss_pred HHHHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCc
Confidence 45678888888899999999999976 69999986433 3667999999999999999999999888765432222232
Q ss_pred CCCCCCCeEEEEEcCCCcceeeec
Q 021504 278 QEYGKEKPIRVLYHGFGHYDALQN 301 (311)
Q Consensus 278 ~e~~~~~pI~L~Yhg~gHYDSL~~ 301 (311)
+ +..+.|.|+|.. ||||.|+.
T Consensus 235 e--~s~P~I~LLYrp-GHYdilY~ 255 (256)
T KOG3991|consen 235 E--ASAPEIYLLYRP-GHYDILYK 255 (256)
T ss_pred c--ccCceEEEEecC-CccccccC
Confidence 2 356789999977 49999874
No 7
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.2e-10 Score=109.06 Aligned_cols=125 Identities=15% Similarity=0.044 Sum_probs=83.5
Q ss_pred CcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhcc-c------cCHHHHHHHh
Q 021504 163 DYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFI-E------GDFDLYVSQI 235 (311)
Q Consensus 163 gL~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fi-e------~dfdeYl~~M 235 (311)
.+.--+++|||+|+|.+|++||..+.-. -.+ +....+|-.-..|...+...|+.+. + -.|++|++.|
T Consensus 170 ~i~k~d~~~dG~ieia~iS~~l~v~i~~----Vdv--~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ne~ 243 (306)
T COG5539 170 WIVKPDSQGDGCIEIAIISDQLPVRIHV----VDV--DKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVNEV 243 (306)
T ss_pred hhhccccCCCceEEEeEeccccceeeee----eec--chhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHhhh
Confidence 4555789999999999999999765310 111 1123344444444444455565553 1 2699999999
Q ss_pred cCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEE--c--CCCcceeee
Q 021504 236 RKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLY--H--GFGHYDALQ 300 (311)
Q Consensus 236 ~k~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Y--h--g~gHYDSL~ 300 (311)
+.+..||+.+|++|||++|++|+++++.. ++ +..|+.= +..-..-+.| | +.||||+++
T Consensus 244 ~~~a~~g~~~ei~qLas~lk~~~~~~nT~----~~--~ik~n~c-~~~~~~e~~~~~Ha~a~GH~n~~~ 305 (306)
T COG5539 244 LFDASDGITIEIQQLASLLKNPHYYTNTA----SP--SIKCNIC-GTGFVGEKDYYAHALATGHYNFGE 305 (306)
T ss_pred cccccccchHHHHHHHHHhcCceEEeecC----Cc--eEEeecc-ccccchhhHHHHHHHhhcCccccC
Confidence 99999999999999999999999999753 33 2334321 1122344455 4 557999874
No 8
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=3e-09 Score=101.39 Aligned_cols=114 Identities=28% Similarity=0.266 Sum_probs=95.4
Q ss_pred eeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhcc-ccCHHHHHHHhcCCCCcC-CHH
Q 021504 168 GIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFI-EGDFDLYVSQIRKPHVWG-GEP 245 (311)
Q Consensus 168 ~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fi-e~dfdeYl~~M~k~gtWG-G~l 245 (311)
+.-.|.+|+|+|.+..++. ....+||+.|..+..+|+|.|.+.+ +-+.-+|+.++.++..|| |++
T Consensus 116 p~~~d~srl~q~~~~~l~~-------------asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~i 182 (306)
T COG5539 116 PGQDDNSRLFQAERYSLRD-------------ASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCI 182 (306)
T ss_pred CCCCchHHHHHHHHhhhhh-------------hhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceE
Confidence 4446899999999987752 2578999999999999999998776 558999999999999999 999
Q ss_pred HHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeec
Q 021504 246 ELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQN 301 (311)
Q Consensus 246 EL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~~ 301 (311)
|+.++++.|++.|+|...+.+ ....|++.. ....+.+.|.|. |||....
T Consensus 183 eia~iS~~l~v~i~~Vdv~~~-----~~dr~~~~~-~~q~~~i~f~g~-hfD~~t~ 231 (306)
T COG5539 183 EIAIISDQLPVRIHVVDVDKD-----SEDRYNSHP-YVQRISILFTGI-HFDEETL 231 (306)
T ss_pred EEeEeccccceeeeeeecchh-----HHhhccCCh-hhhhhhhhhccc-ccchhhh
Confidence 999999999999999988743 246677653 346688999997 9998763
No 9
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.
Probab=92.32 E-value=0.42 Score=39.41 Aligned_cols=95 Identities=17% Similarity=0.275 Sum_probs=56.0
Q ss_pred eCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhccccCHHHHHHHhcC--CCCcCCHHH
Q 021504 169 IPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRK--PHVWGGEPE 246 (311)
Q Consensus 169 IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fie~dfdeYl~~M~k--~gtWGG~lE 246 (311)
+..|+|||--||+..|... -+.+... |..+. ...+.|+.++++ |.||-|
T Consensus 3 ~sR~NNCLVVAis~~L~~T--------------~e~l~~~----M~An~--------~~i~~y~~W~r~~~~STW~D--- 53 (104)
T PF05415_consen 3 ASRPNNCLVVAISECLGVT--------------LEKLDNL----MQANV--------STIKKYHTWLRKKRPSTWDD--- 53 (104)
T ss_pred ccCCCCeEeehHHHHhcch--------------HHHHHHH----HHhhH--------HHHHHHHHHHhcCCCCcHHH---
Confidence 5679999999999987521 1111111 22221 236788888765 789955
Q ss_pred HHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEE----cCCCccee
Q 021504 247 LLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLY----HGFGHYDA 298 (311)
Q Consensus 247 L~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Y----hg~gHYDS 298 (311)
..++|+.+++.|+|--.... + .....+++.. ....++| .+.|||-+
T Consensus 54 C~mFA~~LkVsm~vkV~~~~--~-~~l~~~~d~~---~s~v~~~~~~Ke~dGHF~a 103 (104)
T PF05415_consen 54 CRMFADALKVSMQVKVLSDK--P-YDLLYFVDGA---VSVVTLHLEGKESDGHFIA 103 (104)
T ss_pred HHHHHHhheeEEEEEEcCCC--C-ceeeEeecCc---cceehhhhhccccCCceec
Confidence 46899999999988443322 2 1233344432 2334455 26789854
No 10
>PF05381 Peptidase_C21: Tymovirus endopeptidase; InterPro: IPR008043 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry is found in cysteine peptidases belong to the MEROPS peptidase family C21 (tymovirus endopeptidase family, clan CA). The type example is tymovirus endopeptidase (turnip yellow mosaic virus). The noncapsid protein expressed from ORF-206 of turnip yellow mosaic virus (TYMV) is autocatalytically processed by a papain-like protease, producing N-terminal 150kDa and C-terminal 70kDa proteins.; GO: 0003968 RNA-directed RNA polymerase activity, 0016032 viral reproduction
Probab=45.69 E-value=1.2e+02 Score=25.53 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=54.2
Q ss_pred CCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhccccCHHHHHHHhcCCCCcCCHHHHHHHH
Q 021504 172 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMAS 251 (311)
Q Consensus 172 DGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fie~dfdeYl~~M~k~gtWGG~lEL~AlA 251 (311)
.-+||--||+.|.... .+++-..|....-|-+..|++. ++-|-== -.+.|||
T Consensus 2 ~~~CLL~A~s~at~~~----------~~~LW~~L~~~lPDSlL~n~ei----------------~~~GLST--DhltaLa 53 (104)
T PF05381_consen 2 ALDCLLVAISQATSIS----------PETLWATLCEILPDSLLDNPEI----------------RTLGLST--DHLTALA 53 (104)
T ss_pred CcceeHHhhhhhhCCC----------HHHHHHHHHHhCchhhcCchhh----------------hhcCCcH--HHHHHHH
Confidence 4589999999987532 1344445555444444333221 2212111 1367999
Q ss_pred HhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcC--CCccee
Q 021504 252 HVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHG--FGHYDA 298 (311)
Q Consensus 252 ~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Yhg--~gHYDS 298 (311)
..|+....|.... + ..+||-.. ....+.|.|.. .|||..
T Consensus 54 ~~~~~~~~~hs~~----~---~~~~Gi~~-as~~~~I~ht~G~p~HFs~ 94 (104)
T PF05381_consen 54 YRYHFQCTFHSDH----G---VLHYGIKD-ASTVFTITHTPGPPGHFSL 94 (104)
T ss_pred HHHheEEEEEcCC----c---eEEeecCC-CceEEEEEeCCCCCCcccc
Confidence 9999999998742 2 35788654 34556666652 359998
No 11
>PRK09784 hypothetical protein; Provisional
Probab=34.52 E-value=22 Score=34.66 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=18.7
Q ss_pred cCCcEEEeeCCCCchHhHHHH
Q 021504 161 YTDYSVIGIPGDGRCLFRAVA 181 (311)
Q Consensus 161 ~~gL~I~~IpgDGNCLFRAVA 181 (311)
..||+-.+|.|||-||.|||-
T Consensus 197 ~~glkyapvdgdgycllrail 217 (417)
T PRK09784 197 TYGLKYAPVDGDGYCLLRAIL 217 (417)
T ss_pred hhCceecccCCCchhHHHHHH
Confidence 358999999999999999975
No 12
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=34.43 E-value=28 Score=29.52 Aligned_cols=16 Identities=38% Similarity=0.725 Sum_probs=14.3
Q ss_pred CCCCchHhHHHHHhhh
Q 021504 170 PGDGRCLFRAVAHGAC 185 (311)
Q Consensus 170 pgDGNCLFRAVA~QL~ 185 (311)
|+||+|-+|.|+.-++
T Consensus 5 P~DG~CG~H~i~aI~n 20 (108)
T PF05412_consen 5 PGDGSCGWHCIAAIMN 20 (108)
T ss_pred CCCCchHHHHHHHHHH
Confidence 7899999999998665
No 13
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=31.36 E-value=21 Score=35.98 Aligned_cols=43 Identities=33% Similarity=0.391 Sum_probs=39.2
Q ss_pred hhccccCHHHHHHHhcCCCCcCCHHHHHHHHHhcCCCEEEEee
Q 021504 221 EWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMH 263 (311)
Q Consensus 221 e~fie~dfdeYl~~M~k~gtWGG~lEL~AlA~ll~~~I~Vy~~ 263 (311)
..++.++|+.|+..+.++.+-|+-+||.+++.+++.+.+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~r~~~~~~~~ 45 (371)
T KOG2605|consen 3 REEVSGDFDWYLWDLGKTKTLGTILELGAMSHVYRRNVIDYEP 45 (371)
T ss_pred ccccCchHHHHhhcCCCCcccccchhhhhccccccCCCCCcCC
Confidence 3456788999999999999999999999999999999998875
No 14
>PF07418 PCEMA1: Acidic phosphoprotein precursor PCEMA1; InterPro: IPR010882 This family consists of several acidic phosphoprotein precursor PCEMA1 sequences which appear to be found exclusively in Plasmodium chabaudi. PCEMA1 is an antigen that is associated with the membrane of the infected erythrocyte throughout the entire intraerythrocytic cycle []. The exact function of this family is unclear.
Probab=26.95 E-value=41 Score=32.77 Aligned_cols=39 Identities=26% Similarity=0.465 Sum_probs=30.6
Q ss_pred ceEEeccccccccccceeeeeec-----CCCceeeeecccCcccccccc
Q 021504 13 NVVNLGGRFQGQMGGNICGVTYR-----GPSSSCCFYLCSGQSKKNYAG 56 (311)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 56 (311)
|||+|+ +..|-||.+|-. --||--||+.|+-+.++.++-
T Consensus 2 k~islg-----lissiifsivlakn~s~s~sttgcF~f~rkK~kk~~~~ 45 (282)
T PF07418_consen 2 KVISLG-----LISSIIFSIVLAKNSSGSGSTTGCFGFCRKKPKKIHKT 45 (282)
T ss_pred ceeeec-----chhhhheeeEEeccCCCCCCccceehhhcccccccccc
Confidence 688886 889999988743 345677999999999887764
No 15
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=26.13 E-value=43 Score=33.03 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhcChhhhhhccc
Q 021504 201 LADDLRAKVADEFIKRREETEWFIE 225 (311)
Q Consensus 201 ~h~eLR~~vvdy~~~n~d~fe~fie 225 (311)
....||...++||+.|.++|.+|+.
T Consensus 188 ~v~kLR~~~a~Ymr~H~~df~pf~~ 212 (302)
T KOG2606|consen 188 SVQKLREETADYMREHVEDFLPFLL 212 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHhc
Confidence 4578999999999999999999973
No 16
>cd03346 eu_TrpOH Eukaryotic tryptophan hydroxylase (TrpOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tyrosine hydroxylase (TyrOH). TrpOH oxidizes L-tryptophan to 5-hydroxy-L-tryptophan, the rate-limiting step in the biosynthesis of serotonin (5-hydroxytryptamine), a widely distributed hormone and neurotransmitter.
Probab=22.07 E-value=42 Score=32.90 Aligned_cols=91 Identities=10% Similarity=0.145 Sum_probs=61.6
Q ss_pred cccccccCCcEEEeeCC--CCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhh------hcc-c
Q 021504 155 SHGKKVYTDYSVIGIPG--DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETE------WFI-E 225 (311)
Q Consensus 155 ~~g~~~~~gL~I~~Ipg--DGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe------~fi-e 225 (311)
.+-+...+|++++.|+| ...=+|..+|+..+- ...++|..-.-.+.+-+|-|- |++ +
T Consensus 113 n~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~r~Fp--------------~t~~IR~~~~~~YtpEPDifHEl~GHvPlLad 178 (287)
T cd03346 113 SRFLKERTGFTIRPVAGYLSPRDFLAGLAFRVFH--------------CTQYVRHSSDPFYTPEPDTCHELLGHVPLLAD 178 (287)
T ss_pred HHHHHhccCCEEEecCCcCCHHHHHHHHhcCccc--------------ceeeecCccccCCCCCCchHHHHhccchhhcC
Confidence 56677779999999999 888899999987772 234566543333334455441 222 3
Q ss_pred cCHHHHHHHhcCCCCcCCHHHHHHHHHhcCCCEE
Q 021504 226 GDFDLYVSQIRKPHVWGGEPELLMASHVLRMPIT 259 (311)
Q Consensus 226 ~dfdeYl~~M~k~gtWGG~lEL~AlA~ll~~~I~ 259 (311)
..|.+|.+.+..-+.=...-++.-||++|=-.|.
T Consensus 179 p~FA~f~q~~G~~~l~a~~~~i~~LarlYWfTVE 212 (287)
T cd03346 179 PSFAQFSQEIGLASLGASDEDIQKLATCYFFTVE 212 (287)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHhHhhhhhcc
Confidence 5699999997665444577778889998865544
No 17
>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.
Probab=21.60 E-value=19 Score=33.93 Aligned_cols=91 Identities=11% Similarity=0.189 Sum_probs=62.7
Q ss_pred cccccccCCcEEEeeCC--CCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhh------hcc-c
Q 021504 155 SHGKKVYTDYSVIGIPG--DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETE------WFI-E 225 (311)
Q Consensus 155 ~~g~~~~~gL~I~~Ipg--DGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe------~fi-e 225 (311)
.+-+...+|++++.|+| ..+=+|..+|+..+- ...++|..-.-.+.+-||-|- |++ .
T Consensus 53 n~~L~~~TGw~~~pV~gli~~~~Ff~~LA~r~Fp--------------~t~~iR~~~~~~YtpEPDifHe~~GH~P~L~~ 118 (221)
T cd00361 53 SEFLKALTGWTLVPVAGLISPRDFFALLAFRVFP--------------VTQYIRHPEEPDYTPEPDIFHELFGHVPLLAD 118 (221)
T ss_pred HHHHHhhcCCEEEecCCcCCHHHHHHHHhcCCCc--------------eeeeecCcCCCCCCCCChhHHHHhccchhhcC
Confidence 56777889999999999 888889888886652 134555544333445555542 222 3
Q ss_pred cCHHHHHHHhcCCCCcCCH-HHHHHHHHhcCCCEE
Q 021504 226 GDFDLYVSQIRKPHVWGGE-PELLMASHVLRMPIT 259 (311)
Q Consensus 226 ~dfdeYl~~M~k~gtWGG~-lEL~AlA~ll~~~I~ 259 (311)
..|.+|.+.+.+-+.=..+ -++..||++|=-.|.
T Consensus 119 p~fAdf~q~~G~~~l~a~~~~~~~~LarlyWfTVE 153 (221)
T cd00361 119 PSFADFSQEYGLASLGASDLEEIEKLARLYWFTVE 153 (221)
T ss_pred HHHHHHHHHHHHHHhCcCCHHHHHHHHHhhhhhcc
Confidence 5699999998876655666 678889988754443
No 18
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=20.17 E-value=44 Score=34.82 Aligned_cols=88 Identities=11% Similarity=0.180 Sum_probs=57.4
Q ss_pred ccccCCcEEEeeCC--CCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhh------hcc-ccCH
Q 021504 158 KKVYTDYSVIGIPG--DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETE------WFI-EGDF 228 (311)
Q Consensus 158 ~~~~~gL~I~~Ipg--DGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe------~fi-e~df 228 (311)
+...+|++++.|+| ...=+|..+|+..+- ...++|..-.-.+.+-||-+- |++ +..|
T Consensus 245 L~~~TGw~~~pV~Gll~~r~F~~~LA~R~F~--------------~tqyIR~~~~~~YtpEPDi~HEl~GHvPlLadp~F 310 (464)
T TIGR01270 245 LKAKTGFRLRPVAGYLSARDFLSGLAFRVFH--------------CTQYVRHSADPFYTPEPDTCHELLGHMPLLADPSF 310 (464)
T ss_pred HHhccCCEEEeccccCCHHHHHHHHhcCccc--------------eeeeeccccccCcCCCCchHHHHhcccchhcCHHH
Confidence 34457999999988 778888888887762 134556543333344455441 222 4569
Q ss_pred HHHHHHhcCCCCcCCHHHHHHHHHhcCCCEE
Q 021504 229 DLYVSQIRKPHVWGGEPELLMASHVLRMPIT 259 (311)
Q Consensus 229 deYl~~M~k~gtWGG~lEL~AlA~ll~~~I~ 259 (311)
.+|.+.+..-+.=+.+-++.-||++|=-.|.
T Consensus 311 A~f~q~~G~~sl~a~~e~i~~LarlyWfTVE 341 (464)
T TIGR01270 311 AQFSQEIGLASLGASEEDIKKLATLYFFTIE 341 (464)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHhHhhhhhhh
Confidence 9999997765554467778889988854443
Done!