Query 021504
Match_columns 311
No_of_seqs 134 out of 948
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 05:06:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021504.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021504hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 100.0 3.8E-36 1.3E-40 267.7 8.8 141 149-304 44-184 (185)
2 3by4_A OTU1, ubiquitin thioest 100.0 8.4E-33 2.9E-37 250.0 10.8 121 162-301 18-139 (212)
3 3phx_A RNA-directed RNA polyme 100.0 1E-31 3.5E-36 238.7 14.6 140 162-310 29-168 (185)
4 3phu_A RNA-directed RNA polyme 100.0 7.1E-31 2.4E-35 239.3 16.4 140 162-310 29-168 (219)
5 1tff_A Ubiquitin thiolesterase 99.9 6E-22 2.1E-26 181.4 13.8 99 201-303 131-232 (234)
6 4dhi_B Ubiquitin thioesterase 99.8 4.6E-19 1.6E-23 167.0 13.5 103 200-303 168-275 (284)
7 4ddg_A Ubiquitin-conjugating e 99.8 1.1E-18 3.8E-23 170.1 14.3 97 201-300 299-398 (399)
8 2zfy_A Ubiquitin thioesterase 99.8 1.5E-18 5.2E-23 158.7 12.3 114 172-300 117-233 (234)
9 3dkb_A Tumor necrosis factor, 98.7 1.1E-07 3.8E-12 92.2 11.2 140 164-307 112-288 (390)
10 3zrh_A Ubiquitin thioesterase 98.2 4.3E-06 1.5E-10 82.4 10.8 137 164-305 189-352 (454)
11 2zfy_A Ubiquitin thioesterase 96.3 0.01 3.5E-07 53.9 8.2 22 165-186 44-65 (234)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=100.00 E-value=3.8e-36 Score=267.68 Aligned_cols=141 Identities=24% Similarity=0.432 Sum_probs=103.3
Q ss_pred chhhcccccccccCCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhccccCH
Q 021504 149 LSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDF 228 (311)
Q Consensus 149 ~~~~~~~~g~~~~~gL~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fie~df 228 (311)
+.+..|...+....||.+++||+||||||||||+||+ |. ++.|.+||+.+++||++|+++|++|++++|
T Consensus 44 ~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~---g~--------~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~ 112 (185)
T 3pfy_A 44 QQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVY---GD--------QDMHEVVRKHCMDYLMKNADYFSNYVTEDF 112 (185)
T ss_dssp HHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHH---SC--------GGGHHHHHHHHHHHHHHTHHHHTTCC----
T ss_pred HHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHh---CC--------chHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 4455677777667899999999999999999999999 33 356899999999999999999999999999
Q ss_pred HHHHHHhcCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCC
Q 021504 229 DLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGH 304 (311)
Q Consensus 229 deYl~~M~k~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~~~~~ 304 (311)
++||++|+++++|||++||+|||++|+++|.||+.+. .++.+. .|.+.+..++|+|+||+.+|||||+.|.+
T Consensus 113 e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~---~~i~i~-~g~~~~~~~~I~L~Y~~~~HYnSv~~p~~ 184 (185)
T 3pfy_A 113 TTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYST---EPINTF-HGIHQNEDEPIRVSYHRNIHYNSVVNPNK 184 (185)
T ss_dssp -------------CCHHHHHHHHHHHTSCEEEESSCS---SCSEEE-CTTSCCTTSCEEEEEETTTEEEEEECC--
T ss_pred HHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCC---CCeEEe-cCccCCCCCEEEEEECCCCCcccccCCCC
Confidence 9999999999999999999999999999999999752 233332 25444567899999998889999998864
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.98 E-value=8.4e-33 Score=250.05 Aligned_cols=121 Identities=28% Similarity=0.426 Sum_probs=106.7
Q ss_pred CCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhh-hhccccCHHHHHHHhcCCCC
Q 021504 162 TDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREET-EWFIEGDFDLYVSQIRKPHV 240 (311)
Q Consensus 162 ~gL~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~f-e~fie~dfdeYl~~M~k~gt 240 (311)
.+|.+++||+||||||||||+|| .. + ..|.+||+.+++||.+|+++| +.|++++|++||++|+++++
T Consensus 18 ~~l~~~~i~~DGnCLFrAva~qL-~~---~--------~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~ 85 (212)
T 3by4_A 18 NVLSVHPVLDDNSCLFHAIAYGI-FK---Q--------DSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMES 85 (212)
T ss_dssp SEEEEECCCCSTTHHHHHHHHHH-HS---S--------CCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTS
T ss_pred CCeEEEEeCCCCchHHHHHHHHh-CC---c--------hHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCE
Confidence 46999999999999999999999 42 1 347899999999999999999 47778999999999999999
Q ss_pred cCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeec
Q 021504 241 WGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQN 301 (311)
Q Consensus 241 WGG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~~ 301 (311)
|||++||+|||++|+++|.||+.+ .++ +..||++. ..++|+|+|++ +|||||+.
T Consensus 86 WGg~iEL~Als~~~~~~I~V~~~~---~~~--~~~~~~~~-~~~~I~L~Y~g-~HYdsl~~ 139 (212)
T 3by4_A 86 WGGAIEIGIISDALAVAIYVVDID---AVK--IEKFNEDK-FDNYILILFNG-IHYDSLTM 139 (212)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEETT---TTE--EEEESTTT-CSEEEEEEECS-SCEEEEEE
T ss_pred EccHHHHHHHHHHHCCCEEEEECC---CCC--eEEeCCCC-CCCeEEEEEcC-CcceEEec
Confidence 999999999999999999999974 233 56788765 56899999996 59999998
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.97 E-value=1e-31 Score=238.72 Aligned_cols=140 Identities=16% Similarity=0.301 Sum_probs=113.2
Q ss_pred CCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhccccCHHHHHHHhcCCCCc
Q 021504 162 TDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVW 241 (311)
Q Consensus 162 ~gL~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fie~dfdeYl~~M~k~gtW 241 (311)
.+|.+..||+||||||||||+||+.+ .+.+. .+..|.+||+.+++||.+|+++ .+++++|++||++|+++++|
T Consensus 29 ~~~~v~rv~gDGnCLFrAva~qL~~~--~~~~~---~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~W 101 (185)
T 3phx_A 29 DYFEIVRQPGDGNCFYHSIAELTMPN--KTDHS---YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEW 101 (185)
T ss_dssp HHEEEECCCSSTTHHHHHHHHHHSTT--CCTTT---HHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCC
T ss_pred cCeEEEccCCCCchHHHHHHHHHhCC--Cccch---hhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCcc
Confidence 35889999999999999999999842 12111 1345999999999999999988 45789999999999999999
Q ss_pred CCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCCCCCCCC
Q 021504 242 GGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISK 310 (311)
Q Consensus 242 GG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~~~~~~~p~~~ 310 (311)
||++||+|+|++|+++|+||+.+.+. +++.+..||++. ..++|+|+|++.+|||+|+...+..++.+
T Consensus 102 Gg~iEL~Als~~~~v~I~V~~~d~~~-~~~~i~~f~~~~-~~~~I~L~Y~g~~HYdsl~~~~~~~~~~~ 168 (185)
T 3phx_A 102 GSTLEASMLAKEMGITIIIWTVAASD-EVEAGIKFGDGD-VFTAVNLLHSGQTHFDALRILPQFETDTR 168 (185)
T ss_dssp CBHHHHHHHHHHHCCCEEEEEC--CC-BCCEEEEESSCC-TTTSEEEEEETTTEEEEEEECGGGC----
T ss_pred CcHHHHHHHHHHHCCcEEEEEecCCC-CceEEEEcCCCC-CCCEEEEEECCCcCchhceECCCCCCCCc
Confidence 99999999999999999999987442 234567888764 36899999999779999999887776654
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.97 E-value=7.1e-31 Score=239.27 Aligned_cols=140 Identities=16% Similarity=0.298 Sum_probs=117.1
Q ss_pred CCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhccccCHHHHHHHhcCCCCc
Q 021504 162 TDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVW 241 (311)
Q Consensus 162 ~gL~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fie~dfdeYl~~M~k~gtW 241 (311)
.+|.++.||||||||||||++||+.+ .+.+. .+..|.+||+.+++||.+|+++ .+++++|++||++|+++++|
T Consensus 29 ~~~~V~rvpgDGnCLFrAVs~qL~~~--~~~~~---~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~W 101 (219)
T 3phu_A 29 DYFEIVRQPGDGNCFYHSIAELTMPN--KTDHS---YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEW 101 (219)
T ss_dssp HHEEEECCCCSSCHHHHHHHHHHCTT--CCTTT---HHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCC
T ss_pred cceEEEccCCCCchHHHHHHHHHhCC--Cccch---hhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCcc
Confidence 35899999999999999999999842 12111 1345999999999999999988 45789999999999999999
Q ss_pred CCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCCCCCCCC
Q 021504 242 GGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISK 310 (311)
Q Consensus 242 GG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~~~~~~~p~~~ 310 (311)
||++||+|+|++|+++|+||+.+.+ +..+.+..||++.. .++|+|+|++.+|||+|+...+..+.++
T Consensus 102 GG~iEL~AlS~~~~v~I~V~~~d~~-g~~~~i~~fge~~~-~~~I~L~Y~g~~HYdSL~~~~d~~~~~~ 168 (219)
T 3phu_A 102 GSTLEASMLAKEMGITIIIWTVAAS-DEVEAGIKFGDGDV-FTAVNLLHSGQTHFDALRILPQFETDTR 168 (219)
T ss_dssp CCHHHHHHHHHHTTCCEEEEEESSS-SBEEEEEEESSCCT-TTSEEEEEETTTEEEEEEECTTTCCSCC
T ss_pred CCHHHHHHHHHHhCCCEEEEEecCC-CCceeEEEecCCCC-CCeEEEEECCCcCchhheECCCCCCCCC
Confidence 9999999999999999999998743 23455778887653 6899999999779999999988776654
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.87 E-value=6e-22 Score=181.40 Aligned_cols=99 Identities=15% Similarity=0.216 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHH-HhcCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcC
Q 021504 201 LADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYG 277 (311)
Q Consensus 201 ~h~eLR~~vvdy~~~n~d~fe~fie~--dfdeYl~-~M~k~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG 277 (311)
....||..++.||..|+++|++|+++ +|++||+ .++.+++|||++||+|||++|+++|.|++.|+.. +.+....|.
T Consensus 131 iv~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~-~~~~~~~~~ 209 (234)
T 1tff_A 131 IVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD-TALNHHVFP 209 (234)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCC
T ss_pred HHHHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCC-CccccccCC
Confidence 45779999999999999999999976 7999999 8999999999999999999999999999987553 223233454
Q ss_pred CCCCCCCeEEEEEcCCCcceeeecCC
Q 021504 278 QEYGKEKPIRVLYHGFGHYDALQNLG 303 (311)
Q Consensus 278 ~e~~~~~pI~L~Yhg~gHYDSL~~~~ 303 (311)
+ +..+.|+|+|++ ||||+|+..+
T Consensus 210 ~--~~~~~I~LlY~p-gHYdily~~~ 232 (234)
T 1tff_A 210 E--AATPSVYLLYKT-SHYNILYAAD 232 (234)
T ss_dssp C--CSSCSEEEEEET-TEEEEEEECC
T ss_pred C--CCCCeEEEEECC-CCceecccCC
Confidence 3 245779999997 4999998653
No 6
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.79 E-value=4.6e-19 Score=166.99 Aligned_cols=103 Identities=16% Similarity=0.107 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHH-HhcCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEE-
Q 021504 200 ELADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAE- 275 (311)
Q Consensus 200 ~~h~eLR~~vvdy~~~n~d~fe~fie~--dfdeYl~-~M~k~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~- 275 (311)
....+||..++.||+.|+++|++|+.+ ++++||+ +++.+++|||++||+|||++|+++|.|...|+..+..+..+.
T Consensus 168 ~iv~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~ 247 (284)
T 4dhi_B 168 YILMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYD 247 (284)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEE
T ss_pred HHHHHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCccccc
Confidence 345689999999999999999999965 7999998 899999999999999999999999999998875544333334
Q ss_pred cCCCC-CCCCeEEEEEcCCCcceeeecCC
Q 021504 276 YGQEY-GKEKPIRVLYHGFGHYDALQNLG 303 (311)
Q Consensus 276 yG~e~-~~~~pI~L~Yhg~gHYDSL~~~~ 303 (311)
|.++. ...+.|+|+|.. ||||.|+..+
T Consensus 248 fp~~~~~~~p~I~LLYrp-gHYDILY~~~ 275 (284)
T 4dhi_B 248 IPSDDQQIAPEITLLYRP-GHYDVIYKKD 275 (284)
T ss_dssp ESCCCSCCCCSEEEEEET-TEEEEEEECC
T ss_pred CCCCCCCCCCEEEEeecC-CCccccccCC
Confidence 52221 123679999999 5999998654
No 7
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.78 E-value=1.1e-18 Score=170.14 Aligned_cols=97 Identities=24% Similarity=0.361 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHH-HhcCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcC
Q 021504 201 LADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYG 277 (311)
Q Consensus 201 ~h~eLR~~vvdy~~~n~d~fe~fie~--dfdeYl~-~M~k~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG 277 (311)
....||..+..||+.|+++|++|+++ ++++||+ ++...++||||+||+|||+.|+++|.|+..|+..++.+....|+
T Consensus 299 iv~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~ 378 (399)
T 4ddg_A 299 LVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFP 378 (399)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETT
T ss_pred HHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCC
Confidence 46679999999999999999999976 6999999 99999999999999999999999999998886544444445564
Q ss_pred CCCCCCCeEEEEEcCCCcceeee
Q 021504 278 QEYGKEKPIRVLYHGFGHYDALQ 300 (311)
Q Consensus 278 ~e~~~~~pI~L~Yhg~gHYDSL~ 300 (311)
+ +..+.|+|+|.. ||||.|+
T Consensus 379 ~--~~~~~I~LLYrP-gHYDiLY 398 (399)
T 4ddg_A 379 E--GSEPKVYLLYRP-GHYDILY 398 (399)
T ss_dssp T--TCCCCCEEEEET-BEEEEEE
T ss_pred C--CCCCEEEEEEcC-CccccCC
Confidence 3 246789999976 5999986
No 8
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.77 E-value=1.5e-18 Score=158.66 Aligned_cols=114 Identities=20% Similarity=0.270 Sum_probs=97.8
Q ss_pred CCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHH-HhcCCCCcCCHHHHH
Q 021504 172 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELL 248 (311)
Q Consensus 172 DGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fie~--dfdeYl~-~M~k~gtWGG~lEL~ 248 (311)
||+||++++.+|... ......||..++.||..|+++|++|+++ +|++||+ .++.+++||||+||+
T Consensus 117 ~~~~L~~~fndq~~s------------~~~v~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ 184 (234)
T 2zfy_A 117 SVADLLASFNDQSTS------------DYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHII 184 (234)
T ss_dssp CHHHHHHHHTSHHHH------------HHHHHHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHH
T ss_pred CHHHHHHHHHhhccc------------hHHHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHH
Confidence 999999999999752 2568899999999999999999999976 7999997 699999999999999
Q ss_pred HHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeee
Q 021504 249 MASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQ 300 (311)
Q Consensus 249 AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~ 300 (311)
|||++|+++|.|++.|...++.+....|++. ..++|+|+|+. ||||+|+
T Consensus 185 ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~--~~p~I~LlY~p-gHYdiLy 233 (234)
T 2zfy_A 185 ALAQALSVSIQVEYMDRGEGGTTNPHIFPEG--SEPKVYLLYRP-GHYDILY 233 (234)
T ss_dssp HHHHHHTCCEEEEECC-CCSSCCEEEEESTT--CCCSEEEEEET-TEEEEEE
T ss_pred HHHHHhCCCEEEEEcCCCCCCcccceeCCCC--CCCeEEEEECC-CCcccCC
Confidence 9999999999999988665444555667653 45789999997 5999996
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.66 E-value=1.1e-07 Score=92.22 Aligned_cols=140 Identities=20% Similarity=0.334 Sum_probs=89.0
Q ss_pred cEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhh----hhhc-------c----ccCH
Q 021504 164 YSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREE----TEWF-------I----EGDF 228 (311)
Q Consensus 164 L~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~----fe~f-------i----e~df 228 (311)
|......||||||.+|++..++ |-++.+..+|+.++.-||+.....|+.+... ++.| . ..+|
T Consensus 112 L~pL~t~GDGnCLLHAvSqamW---Gv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW 188 (390)
T 3dkb_A 112 LVALKTNGDGNCLMHATSQYMW---GVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEW 188 (390)
T ss_dssp EEEBCCCCSSCHHHHHHHHHHH---SSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHH
T ss_pred eEEEEecCCCchHHHHHhHHhc---CCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHH
Confidence 5567889999999999999999 7777888999999988887543334332211 1111 1 2356
Q ss_pred HHHHHHhcCCCC-------c--CCHHHHHHHHHhcCCCEEEEeec--C--CCCCceEEEEcCC---------CCCCCCeE
Q 021504 229 DLYVSQIRKPHV-------W--GGEPELLMASHVLRMPITVYMHD--K--DAGGLISIAEYGQ---------EYGKEKPI 286 (311)
Q Consensus 229 deYl~~M~k~gt-------W--GG~lEL~AlA~ll~~~I~Vy~~d--~--~s~g~i~I~~yG~---------e~~~~~pI 286 (311)
++-++.-+.+.. + =-++=+.+||++++|||+||... + ..++.+....|+. +.=...||
T Consensus 189 ~~Iv~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI 268 (390)
T 3dkb_A 189 DNLIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPI 268 (390)
T ss_dssp HHHHHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCE
T ss_pred HHHHHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCce
Confidence 665554433211 1 23566899999999999999522 1 1122221122221 11136799
Q ss_pred EEEEcCCCcceeeecCCCCCC
Q 021504 287 RVLYHGFGHYDALQNLGHEGG 307 (311)
Q Consensus 287 ~L~Yhg~gHYDSL~~~~~~~p 307 (311)
.|+|+. |||.+|..-...+|
T Consensus 269 ~LgY~s-~HFsaLV~me~~~~ 288 (390)
T 3dkb_A 269 VLGYDS-HHFVPLVTLKDSGP 288 (390)
T ss_dssp EEEECS-SCEEEEEEBCSSSS
T ss_pred EEEecc-CceeeeeecccCCC
Confidence 999998 59999988665554
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.25 E-value=4.3e-06 Score=82.42 Aligned_cols=137 Identities=23% Similarity=0.344 Sum_probs=93.0
Q ss_pred cEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhh---------hcc--c----cCH
Q 021504 164 YSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETE---------WFI--E----GDF 228 (311)
Q Consensus 164 L~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe---------~fi--e----~df 228 (311)
|..-...||||||-+|++..++ |-++.+..||+.+++-|++.- .-|..+...+| .|. + .+|
T Consensus 189 L~pL~t~GDGNCLLHAvSqamW---GV~DrdlvLRkaL~~~L~~~~-~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW 264 (454)
T 3zrh_A 189 LYALWNRTAGDCLLDSVLQATW---GIYDKDSVLRKALHDSLHDCS-HWFYTRWKDWESWYSQSFGLHFSLREEQWQEDW 264 (454)
T ss_dssp EEEBCCCCSSCHHHHHHHHTTT---SSCCGGGHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred eeEeeecCCCccHHHHHHHHhh---cccCCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhhcCCcccccHHHHHHHH
Confidence 4556889999999999999999 878888899998999888743 33444433211 221 2 357
Q ss_pred HHHHHHhcCCCCcCCHHHHHHHHHhcCCCEEEEeecCC--CCC-ceEEEEcCCCC---------CCCCeEEEEEcCCCcc
Q 021504 229 DLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKD--AGG-LISIAEYGQEY---------GKEKPIRVLYHGFGHY 296 (311)
Q Consensus 229 deYl~~M~k~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~--s~g-~i~I~~yG~e~---------~~~~pI~L~Yhg~gHY 296 (311)
+.-+..-+.|+.==-++=+.+||++++|||+||....- ..| .+....|+.=| =...||.|.|+.. ||
T Consensus 265 ~~iv~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~g-HF 343 (454)
T 3zrh_A 265 AFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTRG-HF 343 (454)
T ss_dssp HHHHHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEETT-EE
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEeccc-ce
Confidence 77777777787666677789999999999999974210 001 11111122111 1257999999985 99
Q ss_pred eeeecCCCC
Q 021504 297 DALQNLGHE 305 (311)
Q Consensus 297 DSL~~~~~~ 305 (311)
.+|..-...
T Consensus 344 saLV~~~~~ 352 (454)
T 3zrh_A 344 SALVAMEND 352 (454)
T ss_dssp EEEEEBCCC
T ss_pred eeeeecccc
Confidence 999877654
No 11
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=96.34 E-value=0.01 Score=53.89 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.4
Q ss_pred EEEeeCCCCchHhHHHHHhhhh
Q 021504 165 SVIGIPGDGRCLFRAVAHGACL 186 (311)
Q Consensus 165 ~I~~IpgDGNCLFRAVA~QL~~ 186 (311)
.++.|.|||||+|||++.+...
T Consensus 44 ~~R~vRgDGNCFyRaf~f~ylE 65 (234)
T 2zfy_A 44 YIRKTRPDGNCFYRAFGFSHLE 65 (234)
T ss_dssp EEECBCCSSCHHHHHHHHHHHH
T ss_pred ceeeccCCccHHHHHHHHHHHH
Confidence 6689999999999999988763
Done!