BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021505
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 80/139 (57%), Gaps = 11/139 (7%)
Query: 99 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 158
D +V V SL GK V YFSA WC PC F P+L+ Y K ++ ++FEVVF +
Sbjct: 17 DGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHES--------KNFEVVFCT 68
Query: 159 TDRDQTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGR- 215
D ++ F YF MPWLA+PF +++L+K+F+V+ IP L+ + + G VT + R
Sbjct: 69 WDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 128
Query: 216 NLINLYQENAYPFTEAKLE 234
L+ + +P+ +A LE
Sbjct: 129 TLVKDPEGEQFPWKDAPLE 147
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 1 MPWLAVPYSDLETKKALNRKFDIEGIPCLV 30
MPWLAVP++ E + L++ F++E IP L+
Sbjct: 83 MPWLAVPFAQSEAVQKLSKHFNVESIPTLI 112
>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
Length = 154
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 80/139 (57%), Gaps = 11/139 (7%)
Query: 99 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 158
D +V V SL GK V YFSA WC PC F P+L+ Y K ++ ++FEVVF +
Sbjct: 18 DGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHES--------KNFEVVFCT 69
Query: 159 TDRDQTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGR- 215
D ++ F YF MPWLA+PF +++L+K+F+V+ IP L+ + + G VT + R
Sbjct: 70 WDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
Query: 216 NLINLYQENAYPFTEAKLE 234
L+ + +P+ +A LE
Sbjct: 130 TLVKDPEGEQFPWKDAPLE 148
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 1 MPWLAVPYSDLETKKALNRKFDIEGIPCLV 30
MPWLAVP++ E + L++ F++E IP L+
Sbjct: 84 MPWLAVPFAQSEAVQKLSKHFNVESIPTLI 113
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 68/120 (56%), Gaps = 10/120 (8%)
Query: 101 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 160
+V + SLVGKTV LYFSA WC PC F P L Y EK ++FEVV +S D
Sbjct: 20 EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFY--------EKHHVAKNFEVVLISWD 71
Query: 161 RDQTSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNLI 218
+++ F Y+G MPWLALPF T+ EL K F V+ IP L+ I + G + Q R +
Sbjct: 72 ENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRV 131
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1 MPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQ 33
MPWLA+P+ T L + F +E IP L+ +
Sbjct: 84 MPWLALPFDQRSTVSELGKTFGVESIPTLITIN 116
>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia
Fasciculata
Length = 146
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 11/136 (8%)
Query: 99 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 158
D +V V SL GK V YFSA WC PC F P+L+ Y K ++ ++FEVVF +
Sbjct: 18 DGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHES--------KNFEVVFCT 69
Query: 159 TDRDQTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGR- 215
D ++ F YF MPWLA+PF +++L+K+F+V+ IP L+ + + G VT + R
Sbjct: 70 WDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
Query: 216 NLINLYQENAYPFTEA 231
L+ + +P+ +A
Sbjct: 130 TLVKDPEGEQFPWKDA 145
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 1 MPWLAVPYSDLETKKALNRKFDIEGIPCLV 30
MPWLAVP++ E + L++ F++E IP L+
Sbjct: 84 MPWLAVPFAQSEAVQKLSKHFNVESIPTLI 113
>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
pdb|1O7U|A Chain A, Radiation Induced Tryparedoxin-I
pdb|1O85|A Chain A, Radiation-Reduced Tryparedoxin-I
pdb|1O8W|A Chain A, Radiation-Reduced Tryparedoxin-I
Length = 146
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 11/136 (8%)
Query: 99 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 158
D +V V SL GK V YFSA WC PC F P+L+ Y K ++ ++FEVVF +
Sbjct: 18 DGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHES--------KNFEVVFCT 69
Query: 159 TDRDQTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGR- 215
D ++ F YF MPWLA+PF +++L+K+F+V+ IP L+ + + G VT + R
Sbjct: 70 WDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
Query: 216 NLINLYQENAYPFTEA 231
L+ + +P+ +A
Sbjct: 130 TLVKDPEGEQFPWKDA 145
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 1 MPWLAVPYSDLETKKALNRKFDIEGIPCLV 30
MPWLAVP++ E + L++ F++E IP L+
Sbjct: 84 MPWLAVPFAQSEAVQKLSKHFNVESIPTLI 113
>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala
Length = 146
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 11/136 (8%)
Query: 99 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 158
D +V V SL GK V YFSA WC P F P+L+ Y K ++ ++FEVVF +
Sbjct: 18 DGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES--------KNFEVVFCT 69
Query: 159 TDRDQTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGR- 215
D ++ F YF MPWLA+PF +++L+K+F+V+ IP L+ + + G VT + R
Sbjct: 70 WDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
Query: 216 NLINLYQENAYPFTEA 231
L+ + +P+ +A
Sbjct: 130 TLVKDPEGEQFPWKDA 145
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 1 MPWLAVPYSDLETKKALNRKFDIEGIPCLV 30
MPWLAVP++ E + L++ F++E IP L+
Sbjct: 84 MPWLAVPFAQSEAVQKLSKHFNVESIPTLI 113
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 10/118 (8%)
Query: 104 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 163
+ SL GKTV YFSA WC PC F P+L+ Y+K + ++FE++ S D ++
Sbjct: 43 MDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDS--------KNFEIILASWDEEE 94
Query: 164 TSFESYFGTMPWLALPFGDPTIKE-LTKYFDVQGIPCLVIIGPE-GKTVTKQGRNLIN 219
F +Y+ MPWL++PF + I E LTK + V+ IP L+ + + G TVT + R+ +
Sbjct: 95 DDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALT 152
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 1 MPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQ 33
MPWL++P+++ +AL +K+ +E IP L+ L
Sbjct: 104 MPWLSIPFANRNIVEALTKKYSVESIPTLIGLN 136
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 70/133 (52%), Gaps = 12/133 (9%)
Query: 88 HDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGD 147
+ L G D +P SL GKTV YFSA WC PC F P+L+ Y+ ++
Sbjct: 12 YSTNVLKGAAADIALP--SLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAES------ 63
Query: 148 ALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE-LTKYFDVQGIPCLV-IIGP 205
++FEV+ +S D F+ Y+ MPWLALPF D E LT FDV+ IP LV +
Sbjct: 64 --KNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEAD 121
Query: 206 EGKTVTKQGRNLI 218
G +T Q R ++
Sbjct: 122 SGNIITTQARTMV 134
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 1 MPWLAVPYSDLETKKALNRKFDIEGIPCLV 30
MPWLA+P+ D + + L FD++ IP LV
Sbjct: 87 MPWLALPFEDRKGMEFLTTGFDVKSIPTLV 116
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Query: 88 HDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGD 147
+ L G D +P SL GKTV YFSA WC PC F P+L+ Y+ +
Sbjct: 9 YSTNVLKGAAADIALP--SLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK------ 60
Query: 148 ALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE-LTKYFDVQGIPCLV-IIGP 205
++FEV+ +S D F+ Y+ MPWLALPF D E LT FDV+ IP LV +
Sbjct: 61 --KNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEAD 118
Query: 206 EGKTVTKQGRNLI 218
G +T Q R ++
Sbjct: 119 SGNIITTQARTMV 131
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 1 MPWLAVPYSDLETKKALNRKFDIEGIPCLV 30
MPWLA+P+ D + + L FD++ IP LV
Sbjct: 84 MPWLALPFEDRKGMEFLTTGFDVKSIPTLV 113
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Query: 88 HDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGD 147
+ L G D +P SL GKTV YFSA WC PC F P+L+ Y+ +
Sbjct: 10 YSTNVLKGAAADIALP--SLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK------ 61
Query: 148 ALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE-LTKYFDVQGIPCLV-IIGP 205
++FEV+ +S D F+ Y+ MPWLALPF D E LT FDV+ IP LV +
Sbjct: 62 --KNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEAD 119
Query: 206 EGKTVTKQGRNLI 218
G +T Q R ++
Sbjct: 120 SGNIITTQARTMV 132
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 1 MPWLAVPYSDLETKKALNRKFDIEGIPCLV 30
MPWLA+P+ D + + L FD++ IP LV
Sbjct: 85 MPWLALPFEDRKGMEFLTTGFDVKSIPTLV 114
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Query: 88 HDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGD 147
+ L G D +P SL GKTV YFSA WC PC F P+L+ Y+ +
Sbjct: 12 YSTNVLKGAAADIALP--SLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK------ 63
Query: 148 ALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE-LTKYFDVQGIPCLV-IIGP 205
++FEV+ +S D F+ Y+ MPWLALPF D E LT FDV+ IP LV +
Sbjct: 64 --KNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEAD 121
Query: 206 EGKTVTKQGRNLI 218
G +T Q R ++
Sbjct: 122 SGNIITTQARTMV 134
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 1 MPWLAVPYSDLETKKALNRKFDIEGIPCLV 30
MPWLA+P+ D + + L FD++ IP LV
Sbjct: 87 MPWLALPFEDRKGMEFLTTGFDVKSIPTLV 116
>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine
Length = 144
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 68/133 (51%), Gaps = 12/133 (9%)
Query: 88 HDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGD 147
+ L G D +P SL GKTV YFSA WC P F P+L+ Y+ +
Sbjct: 9 YSTNVLKGAAADIALP--SLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK------ 60
Query: 148 ALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE-LTKYFDVQGIPCLV-IIGP 205
++FEV+ +S D F+ Y+ MPWLALPF D E LT FDV+ IP LV +
Sbjct: 61 --KNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEAD 118
Query: 206 EGKTVTKQGRNLI 218
G +T Q R ++
Sbjct: 119 SGNIITTQARTMV 131
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 1 MPWLAVPYSDLETKKALNRKFDIEGIPCLV 30
MPWLA+P+ D + + L FD++ IP LV
Sbjct: 84 MPWLALPFEDRKGMEFLTTGFDVKSIPTLV 113
>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin
Related Protein 16 And Its Role In Regulating
Transcription Factor Nf-Kb Activity
Length = 143
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 112 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYF- 170
+G YFSA WC PC F P L +Y ++ D FE++FVS+DR + Y
Sbjct: 29 IGFYFSAHWCPPCRGFTPILADMYSELV-------DDSAPFEIIFVSSDRSEDDMFQYMM 81
Query: 171 -GTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAY 226
WLA+P+ +T + + GIP LVI+ +G ++ GR + A+
Sbjct: 82 ESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEVQSLGPRAF 138
>pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical
Protein From Arabidopsis Thaliana
Length = 89
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 229 TEAKLEFLEKQMEEEAKNLPRSEFHIGHR-HELNLVSEGTGGGPFICCDCDEQGSGWAYQ 287
TE +L+ +E + +E AK+ P+ H+ H HEL L T + C C+E+G+ W+Y
Sbjct: 8 TEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELEL----TRVQVYTCDKCEEEGTIWSYH 63
Query: 288 CLECGYEVHPKCV 300
C EC +++H KC
Sbjct: 64 CDECDFDLHAKCA 76
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 92 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALED 151
++L +++ +S L GK V L F WC PC+K P + + Y+ K V
Sbjct: 9 FVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGV-------- 60
Query: 152 FEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 210
E+V V+ + + ++ + + P T +++ +DV +P +I PEGK V
Sbjct: 61 -EIVAVNVGESKIAVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 92 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALED 151
++L +++ +S L GK V L F WC PC+K P + + Y+ K V
Sbjct: 9 FVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGV-------- 60
Query: 152 FEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 210
E+V V+ + + ++ + + P T +++ +DV +P +I PEGK V
Sbjct: 61 -EIVAVNVGESKIAVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 92 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALED 151
++L +++ +S L GK V L F WC C+K P + + Y+ K V
Sbjct: 6 FVLEDTNGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGV-------- 57
Query: 152 FEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 210
E+V V+ + + ++ + + P T +++ +DV +P +I PEGK V
Sbjct: 58 -EIVAVNVGESKIAVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 114
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 92 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALED 151
++L +++ +S L GK V L F WC P +K P + + Y+ K VE
Sbjct: 9 FVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQGVE------- 61
Query: 152 FEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 210
+V V+ + + ++ + + P T +++ +DV +P +I PEGK V
Sbjct: 62 --IVAVNVGESKIAVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 92 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALED 151
++L +++ +S L GK V L F W PC+K P + + Y+ K VE
Sbjct: 9 FVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQGVE------- 61
Query: 152 FEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 210
+V V+ + + ++ + + P T +++ +DV +P +I PEGK V
Sbjct: 62 --IVAVNVGESKIAVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 92 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALED 151
++L +++ +S L GK V L F WC C+K P + + Y+ K V
Sbjct: 9 FVLEDTNGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGV-------- 60
Query: 152 FEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 210
E+V V+ + + ++ + + P T +++ +DV +P +I PEGK V
Sbjct: 61 -EIVAVNVGESKIAVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 56/132 (42%), Gaps = 19/132 (14%)
Query: 100 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKL-LSIYQKIKQNLVEKGDALEDFEVVFVS 158
++V +SSL GK V L F+A WC C K MP + I+ K K N DF +
Sbjct: 24 KQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDN--------ADF--ALIG 73
Query: 159 TDRDQTSFESY-FGTMPWLALPFG-DPTIKELTKY-FDVQGIPCLVIIGPEGKTVTKQGR 215
DRD+ + F + P G DP KY GI V+I EGK V
Sbjct: 74 IDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIV----- 128
Query: 216 NLINLYQENAYP 227
L LY E +
Sbjct: 129 KLTRLYNEEEFA 140
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 102 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 161
V ++ GK V + F C C K P LL Y K +KG F + VSTDR
Sbjct: 22 VSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFK----DKG-----FTIYGVSTDR 72
Query: 162 DQTSFESYF--GTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 215
+ ++ W + +K++ + + + G P ++++ PEGK V K+ R
Sbjct: 73 REEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELR 128
>pdb|2H1G|A Chain A, Resa C74aC77A
pdb|2H1G|B Chain B, Resa C74aC77A
Length = 143
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 92 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALED 151
++L +++ +S L GK V L F W P +K P + + Y+ K VE
Sbjct: 9 FVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPAKKEFPYMANQYKHFKSQGVE------- 61
Query: 152 FEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 210
+V V+ + + ++ + + P T +++ +DV +P +I PEGK V
Sbjct: 62 --IVAVNVGESKIAVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 92 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALED 151
++L +++ +S L GK V L F WC PC+K P + Y+ K V
Sbjct: 9 FVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQGV-------- 60
Query: 152 FEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPE 206
E+V V+ + + ++ + + P T +++ +DV +P +I PE
Sbjct: 61 -EIVAVNVGESKIAVHNFXKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPE 113
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 104 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-RD 162
+S GKT+ + A WC+PC K MP L + K+ +FEVV ++ D RD
Sbjct: 55 LSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSG---------PNFEVVAINIDTRD 105
Query: 163 QTSFESYFGTMPWLALP-FGDPTIK---ELTKYFDVQGIPCLVIIGPEG 207
+++ L F D K +L G+P V++ P+G
Sbjct: 106 PEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQG 154
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 102 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 161
V ++ L GK + + A WC PC +P L + +K A +D V +S D+
Sbjct: 23 VSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKY---------AGKDIHFVSLSCDK 73
Query: 162 DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVT 211
++ ++E+ + T + + + GIP +++ +GK ++
Sbjct: 74 NKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIIS 123
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 168
G+ L+F WC PC+K +P+ S Y D+++ V V+++++Q E
Sbjct: 34 GQKTILHFWTSWCPPCKKELPQFQSFYD------AHPSDSVKLVTVNLVNSEQNQQVVED 87
Query: 169 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 208
+ L P + EL K + + IP ++ +G+
Sbjct: 88 FIKANK-LTFPIVLDSKGELXKEYHIITIPTSFLLNEKGE 126
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 82 INLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQ- 140
++L+T +R D+K+ +S GK V FSARWC PC++ P + + +
Sbjct: 26 VHLITTKERW-------DQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSL 78
Query: 141 -NLVEKGDALEDFEVVF 156
LV D L DF +
Sbjct: 79 MFLVIDVDELSDFSASW 95
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLV 143
GK V L F A WC PC+ PKL+ + + N+V
Sbjct: 25 GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVV 59
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLV 143
GK V L F A WC PC+ PKL+ + + N+V
Sbjct: 20 GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVV 54
>pdb|2YVL|A Chain A, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|B Chain B, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|C Chain C, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|D Chain D, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
Length = 248
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 248 PRSEFHIGHRHELN----LVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAV 303
P+ F+I + LN ++ GTG G + + G W ++ +E Y+ K ++
Sbjct: 77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKF 136
Query: 304 DRGSMIQ 310
+ G ++
Sbjct: 137 NLGKNVK 143
>pdb|2HYX|A Chain A, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
pdb|2HYX|B Chain B, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
pdb|2HYX|C Chain C, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
pdb|2HYX|D Chain D, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
Length = 352
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 94 LGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQN 141
L P ++ + + SL GK V + F A CI C++ +P ++ YQ K +
Sbjct: 67 LNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDS 114
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 17/81 (20%)
Query: 82 INLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQN 141
++L+T +R D+K+ +S GK V FSARWC P + P Y ++ +N
Sbjct: 26 VHLITTKERW-------DQKLSEASRDGKIVLANFSARWCGPSRQIAP----YYIELSEN 74
Query: 142 ------LVEKGDALEDFEVVF 156
LV D L DF +
Sbjct: 75 YPSLMFLVIDVDELSDFSASW 95
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 10/109 (9%)
Query: 102 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 161
V +S G V L F A WC PC + P K K + F+VV V+ D
Sbjct: 21 VKLSDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYK---------AKGFQVVAVNLDA 71
Query: 162 DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 210
+ +P DP + + + V+G P +I GK +
Sbjct: 72 KTGDAXKFLAQVPAEFTVAFDPK-GQTPRLYGVKGXPTSFLIDRNGKVL 119
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Query: 100 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 159
E V +S L G+ V + F A WC PC + +P + A + F + VS
Sbjct: 19 EVVKLSDLKGQVVIVNFWATWCPPCREEIPSXXRL---------NAAXAGKPFRXLCVSI 69
Query: 160 DR-DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 212
D + + E +F LP K + K + G+P +I G + K
Sbjct: 70 DEGGKVAVEEFFRKTG-FTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKK 122
>pdb|1VCZ|A Chain A, Crystal Structure Of The Rnase Nt In Complex With 5'-Gmp
pdb|1VD1|A Chain A, Crystal Structure Of Rnase Nt In Complex With 5'-Amp
pdb|1VD3|A Chain A, Ribonuclease Nt In Complex With 2'-ump
Length = 217
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 228 FTEAKLEFLEK-QMEEEAKN---LPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSG 283
+ +A L+F +K + E KN PR+ H + EG G P+I C+ D QG+
Sbjct: 112 YFQAALDFRKKSNLLENLKNAEITPRNGEHYTLESIKKAIEEGVGHSPYIECNVDTQGNH 171
Query: 284 WAYQCLEC 291
YQ C
Sbjct: 172 QIYQVYLC 179
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange Protein,
Thioredoxin Family Protein From Chlorobium Tepidum Tls
Length = 165
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 15/109 (13%)
Query: 105 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 164
+SL GK + F A WC PC +P + V+K A F V ++ +
Sbjct: 30 ASLKGKAYIVNFFATWCPPCRSEIPDXVQ---------VQKTWASRGFTFVGIAVNEQLP 80
Query: 165 SFESYFGTMPWLALPFGDPT---IKELTKYFD--VQGIPCLVIIGPEGK 208
+ ++Y T + P T I+ Y D + GIP +I G
Sbjct: 81 NVKNYXKTQ-GIIYPVXXATPELIRAFNGYIDGGITGIPTSFVIDASGN 128
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 93 LLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDF 152
+L D + ++ G+ + + F A+WC PC PK+ ++ ++I
Sbjct: 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP------------- 49
Query: 153 EVVFVSTDRDQT 164
EV F D DQ
Sbjct: 50 EVEFAKVDVDQN 61
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 13/55 (23%)
Query: 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 163
K V + F A WC PC+ PKL + Q + +VVF+ D D+
Sbjct: 20 NKLVVIDFYATWCGPCKMIAPKLEELSQSMS-------------DVVFLKVDVDE 61
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 10 DLETKKALNRKFDIEGIPCLVVLQP 34
DL KAL K+D+ G P L+V +P
Sbjct: 76 DLNKNKALCAKYDVNGFPTLMVFRP 100
>pdb|4DX9|A Chain A, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|0 Chain 0, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|KK Chain k, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|MM Chain m, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|1 Chain 1, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|C Chain C, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|2 Chain 2, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|E Chain E, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|3 Chain 3, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|G Chain G, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|OO Chain o, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|QQ Chain q, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|I Chain I, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|4 Chain 4, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|K Chain K, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|5 Chain 5, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|M Chain M, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|O Chain O, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|AA Chain a, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|SS Chain s, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|UU Chain u, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|CC Chain c, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|EE Chain e, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|GG Chain g, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|II Chain i, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|Q Chain Q, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|S Chain S, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|U Chain U, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|W Chain W, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|WW Chain w, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|Y Chain Y, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|YY Chain y, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
Length = 157
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 216 NLINLYQENA-YPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLV------SEGTG 268
N I++ Q++ PF + EF+ + K ++ + HRH L L+ +G G
Sbjct: 47 NYIDVAQQDGKLPFVPPEEEFIXGVSKYGIKVSTSDQYDVLHRHALYLIIRXVCYDDGLG 106
Query: 269 GGPFICC-----DCDEQGSGWAYQC 288
G + +E+ S W YQC
Sbjct: 107 AGKSLLALKTTDASNEEYSLWVYQC 131
>pdb|4DX8|A Chain A, Icap1 In Complex With Krit1 N-terminus
pdb|4DX8|B Chain B, Icap1 In Complex With Krit1 N-terminus
pdb|4DX8|D Chain D, Icap1 In Complex With Krit1 N-terminus
pdb|4DX8|E Chain E, Icap1 In Complex With Krit1 N-terminus
Length = 154
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 216 NLINLYQENA-YPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLV------SEGTG 268
N I++ Q++ PF + EF+ + K ++ + HRH L L+ +G G
Sbjct: 44 NYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDGLG 103
Query: 269 GGPFICC-----DCDEQGSGWAYQC 288
G + +E+ S W YQC
Sbjct: 104 AGKSLLALKTTDASNEEYSLWVYQC 128
>pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like
Protein Bvu_1432 From Bacteroides Vulgatus
Length = 152
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/73 (17%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 148 ALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEG 207
A + FE+ +S D D+ +++ +PW+ + + ++V +P + ++
Sbjct: 65 ASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNN 124
Query: 208 KTVTKQGRNLINL 220
+ ++ +G N+ +L
Sbjct: 125 E-LSARGENIKDL 136
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 99 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQK 137
D ++ + GK V + F+A WC PC +F+ + + Y K
Sbjct: 26 DAQMTKAKEAGKVVIIDFTASWCGPC-RFIAPVFAEYAK 63
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 112 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV-STDRDQTSFESYF 170
+ + F+ WC PC+K P + +++ D ++ + D ++T E
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQMEG----------DIRFAYMDAEDAEKTMAELNI 69
Query: 171 GTMPWLALPFGDPTIKEL 188
T+P LAL F D I+E+
Sbjct: 70 RTLPSLAL-FVDGMIREV 86
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 111 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQN 141
TV L F A WC C++F P+ I +K N
Sbjct: 36 TVLLEFYAPWCGHCKQFAPEYEKIASTLKDN 66
>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The
Transmembrane Serine Protease Hepsin With Covalently
Bound Preferred Substrate
Length = 372
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 43/126 (34%), Gaps = 19/126 (15%)
Query: 178 LPFGDPTIKE---------------LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQ 222
LPF DP +E LT+Y +P +GK T G Y
Sbjct: 199 LPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYG 258
Query: 223 ENAYPFTEAKLEFLEKQMEEEA----KNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCD 278
+ A EA++ + + A + F G+ +G GGPF+C D
Sbjct: 259 QQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSI 318
Query: 279 EQGSGW 284
+ W
Sbjct: 319 SRTPRW 324
>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
pdb|3T2N|B Chain B, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
Length = 372
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 43/126 (34%), Gaps = 19/126 (15%)
Query: 178 LPFGDPTIKE---------------LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQ 222
LPF DP +E LT+Y +P +GK T G Y
Sbjct: 199 LPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYG 258
Query: 223 ENAYPFTEAKLEFLEKQMEEEA----KNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCD 278
+ A EA++ + + A + F G+ +G GGPF+C D
Sbjct: 259 QQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSI 318
Query: 279 EQGSGW 284
+ W
Sbjct: 319 SRTPRW 324
>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5F|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1P57|B Chain B, Extracellular Domain Of Human Hepsin
Length = 255
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 43/126 (34%), Gaps = 19/126 (15%)
Query: 178 LPFGDPTIKE---------------LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQ 222
LPF DP +E LT+Y +P +GK T G Y
Sbjct: 82 LPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYG 141
Query: 223 ENAYPFTEAKLEFLEKQMEEEA----KNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCD 278
+ A EA++ + + A + F G+ +G GGPF+C D
Sbjct: 142 QQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSI 201
Query: 279 EQGSGW 284
+ W
Sbjct: 202 SRTPRW 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,671,826
Number of Sequences: 62578
Number of extensions: 411888
Number of successful extensions: 1272
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1196
Number of HSP's gapped (non-prelim): 66
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)