Query 021506
Match_columns 311
No_of_seqs 142 out of 214
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 03:31:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02601 beta-carotene hydroxy 100.0 1E-116 3E-121 819.3 26.8 299 1-310 1-300 (303)
2 PF04116 FA_hydroxylase: Fatty 99.5 7.2E-14 1.6E-18 108.2 6.3 110 151-269 2-114 (114)
3 PLN02434 fatty acid hydroxylas 99.2 5.7E-11 1.2E-15 109.8 10.9 119 146-280 83-216 (237)
4 COG3000 ERG3 Sterol desaturase 98.6 4.1E-07 8.8E-12 83.9 10.6 119 148-279 97-222 (271)
5 PLN02869 fatty aldehyde decarb 97.6 6.7E-05 1.5E-09 78.0 5.8 118 154-282 135-264 (620)
6 KOG0539 Sphingolipid fatty aci 97.4 0.00054 1.2E-08 64.2 7.3 117 148-279 85-218 (240)
7 TIGR02230 ATPase_gene1 F0F1-AT 94.5 0.18 3.9E-06 42.1 7.2 66 97-166 30-98 (100)
8 KOG0872 Sterol C5 desaturase [ 86.3 2.3 5E-05 41.8 6.8 43 137-182 122-165 (312)
9 PF11947 DUF3464: Protein of u 85.1 4.7 0.0001 36.0 7.7 56 91-157 56-114 (153)
10 KOG0873 C-4 sterol methyl oxid 79.4 11 0.00023 37.0 8.4 62 118-182 92-157 (283)
11 PLN02434 fatty acid hydroxylas 78.9 5.9 0.00013 37.5 6.4 46 223-274 87-133 (237)
12 PRK03557 zinc transporter ZitB 74.3 29 0.00064 32.9 9.7 69 91-166 65-144 (312)
13 PLN02220 delta-9 acyl-lipid de 74.0 6.6 0.00014 38.1 5.4 35 244-279 222-260 (299)
14 PRK09509 fieF ferrous iron eff 73.0 39 0.00084 31.7 10.1 46 190-239 155-200 (299)
15 PF06930 DUF1282: Protein of u 68.3 79 0.0017 27.3 11.7 69 130-209 46-117 (170)
16 TIGR02908 CoxD_Bacillus cytoch 66.3 37 0.0008 29.1 7.6 40 124-163 69-110 (110)
17 TIGR01297 CDF cation diffusion 65.6 15 0.00033 32.9 5.6 108 91-209 36-153 (268)
18 COG1230 CzcD Co/Zn/Cd efflux s 63.7 59 0.0013 31.9 9.5 148 90-262 67-229 (296)
19 COG0053 MMT1 Predicted Co/Zn/C 61.5 24 0.00051 33.9 6.3 139 91-240 59-207 (304)
20 KOG0874 Sphingolipid hydroxyla 58.4 18 0.00039 35.1 4.9 32 150-182 126-160 (287)
21 PF10520 Kua-UEV1_localn: Kua- 57.7 39 0.00085 30.8 6.7 45 261-306 127-173 (178)
22 PF04678 DUF607: Protein of un 56.1 47 0.001 29.5 6.9 53 94-157 84-137 (180)
23 KOG1287 Amino acid transporter 56.1 1E+02 0.0022 32.3 10.2 158 86-260 268-452 (479)
24 PF12270 Cyt_c_ox_IV: Cytochro 50.4 1.8E+02 0.004 25.8 9.5 110 113-233 9-124 (137)
25 PRK07424 bifunctional sterol d 49.7 46 0.001 33.3 6.4 37 143-182 5-45 (406)
26 PF06072 Herpes_US9: Alphaherp 47.6 46 0.00099 26.1 4.7 22 90-111 16-38 (60)
27 PRK10019 nickel/cobalt efflux 46.5 99 0.0021 30.0 7.9 41 120-161 70-111 (279)
28 cd01060 Membrane-FADS-like The 42.3 26 0.00057 27.2 2.8 36 232-269 14-61 (122)
29 PF11998 DUF3493: Protein of u 41.0 1.9E+02 0.0041 23.3 8.0 51 105-163 22-72 (75)
30 PF10710 DUF2512: Protein of u 39.8 82 0.0018 27.5 5.7 56 108-173 59-114 (136)
31 cd03508 Delta4-sphingolipid-FA 38.2 31 0.00068 33.0 3.2 50 219-269 45-106 (289)
32 PLN02220 delta-9 acyl-lipid de 36.4 62 0.0013 31.6 4.9 36 223-269 68-119 (299)
33 PLN02505 omega-6 fatty acid de 34.7 43 0.00092 33.6 3.6 102 188-295 45-171 (381)
34 cd03511 Rhizopine-oxygenase-li 34.6 64 0.0014 29.8 4.5 36 232-269 57-104 (285)
35 PRK10929 putative mechanosensi 33.8 2.7E+02 0.0058 32.1 9.8 65 104-168 786-861 (1109)
36 PRK02251 putative septation in 32.4 87 0.0019 26.0 4.4 32 107-143 33-64 (87)
37 PF01925 TauE: Sulfite exporte 32.3 2.5E+02 0.0054 24.5 7.6 32 135-166 188-219 (240)
38 PF12447 DUF3683: Protein of u 29.9 24 0.00052 30.6 0.8 19 232-258 47-65 (115)
39 PF14110 DUF4282: Domain of un 29.7 2.6E+02 0.0056 22.3 6.7 59 104-169 16-74 (90)
40 COG4651 RosB Kef-type K+ trans 26.5 1.3E+02 0.0029 30.7 5.4 31 177-208 264-294 (408)
41 PRK11463 fxsA phage T7 F exclu 25.5 1.9E+02 0.0041 25.4 5.6 30 126-155 54-83 (148)
42 PLN03198 delta6-acyl-lipid des 25.0 1.1E+02 0.0023 32.0 4.6 22 55-76 63-84 (526)
43 PF08426 ICE2: ICE2; InterPro 23.6 1.4E+02 0.0031 30.8 5.1 52 99-152 145-198 (412)
44 PF04186 FxsA: FxsA cytoplasmi 22.9 2.4E+02 0.0051 23.8 5.6 31 125-155 49-79 (119)
45 PF04834 Adeno_E3_14_5: Early 22.9 81 0.0018 26.7 2.7 32 99-130 16-48 (97)
46 TIGR02847 CyoD cytochrome o ub 22.4 3.1E+02 0.0068 22.7 6.0 32 119-150 43-75 (96)
47 PLN02598 omega-6 fatty acid de 21.2 1.3E+02 0.0028 30.7 4.3 38 225-269 132-185 (421)
48 KOG2927 Membrane component of 20.8 71 0.0015 32.6 2.3 18 193-210 192-209 (372)
49 COG5547 Small integral membran 20.8 1E+02 0.0022 24.3 2.6 18 195-212 14-31 (62)
50 COG4682 Predicted membrane pro 20.6 86 0.0019 27.8 2.5 39 195-233 79-119 (128)
51 PF11014 DUF2852: Protein of u 20.5 1.1E+02 0.0023 26.6 3.0 26 201-233 10-35 (115)
52 PF11674 DUF3270: Protein of u 20.1 79 0.0017 26.2 2.1 17 194-210 48-64 (90)
No 1
>PLN02601 beta-carotene hydroxylase
Probab=100.00 E-value=1.4e-116 Score=819.34 Aligned_cols=299 Identities=70% Similarity=1.165 Sum_probs=271.8
Q ss_pred Ccccccc-ccccccccccccccCCCCCCCCCCCCccCCcccccccccccccCCCCceeEEEEeccccccccccccchhhh
Q 021506 1 MAVGLLA-AIVPKPFCLLTTKLQPSSLLTTKPAPLFAPLGTHRGFFNGKNRRKLNSFTVCFVLEEKKQSTQIETFTEEEE 79 (311)
Q Consensus 1 ma~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 79 (311)
||++||+ |.|++|.. + ..+..+.|.++..|+|..... +.||+ ++++||||+||+++.+++++.+|+++
T Consensus 1 ma~~~~~~~~t~~~l~--~---~~~~~~~~~~~~~f~~~~~~~---~~~~~---~~~~~c~v~~~~~~~~~~~~~~~~~~ 69 (303)
T PLN02601 1 MAAGLSTIAVTLKPLH--R---SDFRLNHPISLAVFPPSLRFN---GFRRR---KILTVCFVVEERKQSSPMENDEKPES 69 (303)
T ss_pred CcccccccccccccCc--c---cCccCCCCcccccCCHHHHhh---hcccC---CceeEEEEeccccccccccccchhhh
Confidence 8999998 88999844 4 344455555566788864321 22333 56899999999999887777666665
Q ss_pred hhhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHhhhhhHHHHHHHhhhheeeccCCCccHHHHHHHHHHHHHHHHHHHH
Q 021506 80 EESGTQISTAARVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEF 159 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~e~~ty~~aa~~ss~g~~~~a~~a~y~rf~~~~~~g~~p~~eMl~~~al~lga~v~MEf 159 (311)
++.++++..++|++||++|||+||+||++||||||+||||||++||||||+|||||||||+.||+++++|++||+++|||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~k~~er~ty~~aa~~ss~gi~s~a~~a~y~rf~~~~~~g~~p~~em~~~~al~lgtfvgMEf 149 (303)
T PLN02601 70 TTSSSEILMTSRLLKKAEKKKSERFTYLIAAVMSSFGITSMAIMAVYYRFSWQMKGGEVSMLEMFGTFALSVGAAVGMEF 149 (303)
T ss_pred hhhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhcHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 55555555669999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhcCCCCCCCCccccceehhhhHHHHHHHHHhhccccCCchhHHHHHHHHHHHhhhhhhheec
Q 021506 160 WARWAHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHD 239 (311)
Q Consensus 160 vA~~aHKyImHG~LW~~H~sHH~p~~G~fE~NDlFAiifAvPAIaLi~~G~~~~g~~~~l~fgiGLGITlYGiaYffvHD 239 (311)
||||+|||||||+||.||+|||+|++|+||+||+|||+||+|||+|+++|+++.|++|++|||+|+|||+|||+||||||
T Consensus 150 ~Aw~aHKYvMHG~LW~lH~sHH~Pr~g~FE~NDlFaVifAvpAIaL~~~G~~~~g~~p~~~fgiGlGITlYGiaYffVHD 229 (303)
T PLN02601 150 WARWAHRALWHDSLWNMHESHHKPREGAFELNDVFAIVNAVPAIGLLYYGFFNKGLVPGLCFGAGLGITVFGMAYMFVHD 229 (303)
T ss_pred HHHHHHHHHHHhcchhhhhhcCCCCCCCcccccchhhhhHHHHHHHHHHhhccccccHHHHHHHHHhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred ccccCcCCCCCCCCcHHHHHHHHHHHcccCCCCCCcceeEEeecchhhhccChHHHHHHHHHHhhhccCCC
Q 021506 240 GLVHKRFPVGPIADVPYFRRVAAAHQLHHSDKFHGVPYGLFLGPKELEEVGGLEELEKEISKRIKSYNRVP 310 (311)
Q Consensus 240 glVHqRfp~~~~~~~~Ylrri~~AH~lHH~~Ke~Gv~FG~ll~P~kye~vg~~~~L~~~~~r~~~~~~~~~ 310 (311)
||||||||+++++|+||+||+++|||+||++||+|||||||++|+|||||||.||||||++||+|++++++
T Consensus 230 gLVHqRfp~~~~a~~~Y~rrl~~AHklHHa~Ke~Gv~FGfll~P~e~e~vgg~~el~~~~~~~~~~~~~~~ 300 (303)
T PLN02601 230 GLVHKRFPVGPIANVPYLRKVAAAHQLHHTDKFKGVPYGLFLGPKEVEEVGGKEELEKEISRRIKLYNKGS 300 (303)
T ss_pred hhhccccccCCCCCCHHHHHHHHHHHhhccCCcCCccceEEeccHHHHhcCCHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988764
No 2
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.47 E-value=7.2e-14 Score=108.19 Aligned_cols=110 Identities=32% Similarity=0.586 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hhhhhhhhcCCCCC-CCCccccceehhhhHHHHHHHHHhhccccCCchhHHHHHHHHH
Q 021506 151 VGAAVGMEFWARWAHKALWH--ASLWHMHESHHRPR-EGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGI 227 (311)
Q Consensus 151 lga~v~MEfvA~~aHKyImH--G~LW~~H~sHH~p~-~G~fE~NDlFAiifAvPAIaLi~~G~~~~g~~~~l~fgiGLGI 227 (311)
+++++++|++.||+|| +|| +++|.+|+.||++. ..++.. ..+..+.++...++..++... ..+.-+..+.+|+
T Consensus 2 ~~~~l~~d~~~Y~~HR-l~H~~~~l~~~H~~HH~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 77 (114)
T PF04116_consen 2 LLGFLLWDFWEYWMHR-LLHKIPFLWRIHKVHHSPKNPTPLSA-FRFHPLEALLLALLPLLLPLL--LLPFHALAFLLGI 77 (114)
T ss_pred eeeHHHHHHHHHHHHH-HHhcCchHHHHHHHHhCCcccCchHH-HHcChHHHHHHHHHHHHHHHH--HHhHhHHHHHHHH
Confidence 4568999999999999 999 57999999999753 334422 222223222222222211000 0111235677999
Q ss_pred HHhhhhhhheecccccCcCCCCCCCCcHHHHHHHHHHHcccC
Q 021506 228 TVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHS 269 (311)
Q Consensus 228 TlYGiaYffvHDglVHqRfp~~~~~~~~Ylrri~~AH~lHH~ 269 (311)
+++++.|.+.|+++ +.+. .+..+|++...+.|++||+
T Consensus 78 ~~~~~~~~~~H~~~-~~~~----~~~~~~~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 78 ALFYLWYIFIHSGY-HHRF----PPRLRYLFVTPRHHDLHHS 114 (114)
T ss_pred HHHHHHHHHhhcCc-cCCC----CCcchhHhcCHHHHHhhCc
Confidence 99999999999997 3333 2456899999999999995
No 3
>PLN02434 fatty acid hydroxylase
Probab=99.23 E-value=5.7e-11 Score=109.81 Aligned_cols=119 Identities=22% Similarity=0.312 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---------hhhhhhhcCCC-CCCC-Cccccceehhhh-HHHHH---HHHHhhc
Q 021506 146 TFALSVGAAVGMEFWARWAHKALWHA---------SLWHMHESHHR-PREG-PFELNDVFAIIN-AVPAI---ALLSFGF 210 (311)
Q Consensus 146 ~~al~lga~v~MEfvA~~aHKyImHG---------~LW~~H~sHH~-p~~G-~fE~NDlFAiif-AvPAI---aLi~~G~ 210 (311)
.+++++++++.+.+++|.+||++.|. ....+|..||+ |.+. .+ +|.... +++++ .++.+-
T Consensus 83 ~~~~~~~G~~~wtl~EY~lHRflfH~~p~~~~~~~~hfllHg~HH~~P~D~~rL----v~PP~~~~~l~~~~~~l~~~~- 157 (237)
T PLN02434 83 VVLMVAFGVFIWTLLEYILHRFLFHIKTKSYWGNTAHYLLHGCHHKHPMDGLRL----VFPPAATAILCVPFWNLIALF- 157 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHhhcCCCCCCCe----ecCcHHHHHHHHHHHHHHHHH-
Confidence 34556667999999999999999995 24578999997 6553 21 232222 22222 111111
Q ss_pred cccCCchhHHHHHHHHHHHhhhhhhheecccccCcCCCCCCCCcHHHHHHHHHHHcccCCCCCCcceeEE
Q 021506 211 FHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHSDKFHGVPYGLF 280 (311)
Q Consensus 211 ~~~g~~~~l~fgiGLGITlYGiaYffvHDglVHqRfp~~~~~~~~Ylrri~~AH~lHH~~Ke~Gv~FG~l 280 (311)
........+..|..+|. ++|.++|..+=|. +++++|+|++++-|..||..+++. +||+-
T Consensus 158 ~~~~~a~~~~~G~l~gY----l~Yd~~Hy~lH~~------~p~~~~~r~lkr~H~~HHfk~~~~-~fGVT 216 (237)
T PLN02434 158 ATPATAPALFGGGLLGY----VMYDCTHYFLHHG------QPSTDVLRNLKKYHLNHHFRDQDK-GFGIT 216 (237)
T ss_pred cchhHHHHHHHHHHHHH----HHHHHHHHHHHhc------CcchHHHHHHHHHHHHHcCCCCCC-CCCcC
Confidence 11111111112333444 4555555553332 345789999999999999976655 88863
No 4
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=98.58 E-value=4.1e-07 Score=83.92 Aligned_cols=119 Identities=24% Similarity=0.390 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhcCCC-CCCC--Ccccccee-hhhhH-HHHHHHHHhhccccCCchhHHH
Q 021506 148 ALSVGAAVGMEFWARWAHKALWHA-SLWHMHESHHR-PREG--PFELNDVF-AIINA-VPAIALLSFGFFHKGLVPGLCF 221 (311)
Q Consensus 148 al~lga~v~MEfvA~~aHKyImHG-~LW~~H~sHH~-p~~G--~fE~NDlF-AiifA-vPAIaLi~~G~~~~g~~~~l~f 221 (311)
+..+.+++.-+++-||+||..=+. ++|..|+-||. +..- .=..|+.+ .++++ .-.+.++++|. .+ .
T Consensus 97 l~~~~~~~~~D~~~Y~~HR~~H~~~~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~~~~~~~~l~~~-----~~---~ 168 (271)
T COG3000 97 LQLLLAFLFLDLGYYWAHRLLHRVPLLWAFHKVHHSSEVPDPLTALRFHPLEILLLAFLGLLPLLLLGL-----SP---V 168 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCcccCCchhhhhcChHHHHHHHHHHHHHHHHhcC-----CH---H
Confidence 334445889999999999988777 58999999996 2222 22455555 33331 22233333442 22 3
Q ss_pred HHHHHHHHhhhhhhheecccccCcCCCCCCCCcHHHHHHHHHHHcccCCC-CCCcceeE
Q 021506 222 GAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHSDK-FHGVPYGL 279 (311)
Q Consensus 222 giGLGITlYGiaYffvHDglVHqRfp~~~~~~~~Ylrri~~AH~lHH~~K-e~Gv~FG~ 279 (311)
.+++.+++-++.+++.|+++.+. .+.+. ..++-...+-|++||.-. +| .|||.
T Consensus 169 ~~~~~~~~~~~~~~~~H~~~~~~-~~~~~---~~~v~~~p~~H~lHH~~~~~~-~Nyg~ 222 (271)
T COG3000 169 AVALLFIFLLFWAVLIHSNLDLP-LPLGW---LRYVFNTPRHHRLHHSKDPYD-KNYGV 222 (271)
T ss_pred HHHHHHHHHHHHHHHHhcCcccc-CCccc---ceeeecCchHHHHhccCCCCC-Ccchh
Confidence 45677888888999999997775 33322 233446678899999854 43 49983
No 5
>PLN02869 fatty aldehyde decarbonylase
Probab=97.65 E-value=6.7e-05 Score=77.95 Aligned_cols=118 Identities=24% Similarity=0.367 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHh-hhhhhhhcCCCC-CCCCc-------cccceehhhhHHHHHHHHHhhccccCCchhHHHHHH
Q 021506 154 AVGMEFWARWAHKALWHA-SLWHMHESHHRP-REGPF-------ELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAG 224 (311)
Q Consensus 154 ~v~MEfvA~~aHKyImHG-~LW~~H~sHH~p-~~G~f-------E~NDlFAiifAvPAIaLi~~G~~~~g~~~~l~fgiG 224 (311)
+...|++-||+||..=|. ++|+.|+-||.. ...++ |-.=.+.+++++|.+.+++.|.. ... ..++.-
T Consensus 135 v~~~Df~fYW~HRllH~~~LYwr~HkvHHss~~~~P~Ts~~HP~~E~L~y~ll~~IPLllli~~g~~---hi~-t~~~yl 210 (620)
T PLN02869 135 MGPVEFLYYWLHRALHHHYLYSRYHSHHHSSIVTEPITSVIHPFAEHIAYFLLFAIPLLTTIFTGTA---SIA-AFFGYI 210 (620)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhccCCCCCCchhhhcCcHHHHHHHHHHHHHHHHHHhhcccc---hHH-HHHHHH
Confidence 345899999999976555 478999999973 23232 21112234455666555444421 000 001111
Q ss_pred HHHHHhhhhhhheecccccCcCCCCC---CCCcHHHHHHHHHHHcccCCCCCCcceeEEee
Q 021506 225 LGITVFGMAYMFVHDGLVHKRFPVGP---IADVPYFRRVAAAHQLHHSDKFHGVPYGLFLG 282 (311)
Q Consensus 225 LGITlYGiaYffvHDglVHqRfp~~~---~~~~~Ylrri~~AH~lHH~~Ke~Gv~FG~ll~ 282 (311)
+-+++.+ .+.|+++=. +|..+ .+-.+|+-.=-.-|.+||.. +++ |||+++.
T Consensus 211 i~~~f~~---~~gHSN~El--~P~~~~~~~ppLkyll~TPsfHdlHHs~-fd~-NYGlfF~ 264 (620)
T PLN02869 211 SYIDFMN---NMGHCNFEL--IPKWLFSIFPPLKYLMYTPSYHSLHHTQ-FRT-NYSLFMP 264 (620)
T ss_pred HHHHHHh---cccccCccc--cccchhccCCcchheecCchHHhHHhcc-CCc-CcccchH
Confidence 1111111 235666311 12111 11123333345789999985 544 9998743
No 6
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=97.37 E-value=0.00054 Score=64.15 Aligned_cols=117 Identities=26% Similarity=0.451 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-----hh------hhhhcCCC-CCCC-Cccccceehh----hhHHHHHHHHHhhc
Q 021506 148 ALSVGAAVGMEFWARWAHKALWHAS-----LW------HMHESHHR-PREG-PFELNDVFAI----INAVPAIALLSFGF 210 (311)
Q Consensus 148 al~lga~v~MEfvA~~aHKyImHG~-----LW------~~H~sHH~-p~~G-~fE~NDlFAi----ifAvPAIaLi~~G~ 210 (311)
.+++.+.+.+.+++|.+||++.|=- -| -+|--||. |-+| .+ +|.. +.+.|--.++..=+
T Consensus 85 ~~f~~Gvf~WTl~EY~lHRflFH~k~~~~s~~~~t~Hfl~HGcHHk~P~D~~RL----VfPP~~~~il~~pfy~~~~~vl 160 (240)
T KOG0539|consen 85 GLFVIGVFTWTLIEYTLHRFLFHIKPNPDSYWLITLHFLIHGCHHKLPMDGYRL----VFPPTPFAILAAPFYLILSLVL 160 (240)
T ss_pred HHHHHHHHHHHHHHHHHHheEEEecCCCCchHHHHHHHHHhcccccCCCCCceE----ecCCchHHHHHHHHHHHHHHhc
Confidence 4444458899999999999999952 33 46888886 5565 33 4422 22222222221111
Q ss_pred cccCCchhHHHHHHHHHHHhhhhhhheecccccCcCCCCCCCCcHHHHHHHHHHHcccCCCCCCcceeE
Q 021506 211 FHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHSDKFHGVPYGL 279 (311)
Q Consensus 211 ~~~g~~~~l~fgiGLGITlYGiaYffvHDglVHqRfp~~~~~~~~Ylrri~~AH~lHH~~Ke~Gv~FG~ 279 (311)
. .-..+....|.-+|..+|-|...+.|.+ +. ++.+|++.+++-|.=||+...+- .||+
T Consensus 161 ~-~~~~~a~faG~l~GYV~YDmtHYyLHhg----~p-----~~~~~~~~lK~yHl~HHfk~q~~-GfGI 218 (240)
T KOG0539|consen 161 P-HPVAPAGFAGGLLGYVCYDMTHYYLHHG----SP-----PKRPYLKHLKKYHLNHHFKHQDL-GFGI 218 (240)
T ss_pred C-cchhhhhhccchhhhhhhhhhhhhhhcC----CC-----CCchHHHHHHHHHhhhhhhcccc-Cccc
Confidence 1 1011112245668999999999999987 42 34689999999999999743322 4554
No 7
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=94.45 E-value=0.18 Score=42.09 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=40.1
Q ss_pred HhhhhhhhHHHHHHHHHhhhhhHHHHHHHhhhheeecc---CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021506 97 ARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQME---GGEVPLAEMFGTFALSVGAAVGMEFWARWAHK 166 (311)
Q Consensus 97 ~~~~~e~~ty~~aa~~ss~g~~~~a~~a~y~rf~~~~~---~g~~p~~eMl~~~al~lga~v~MEfvA~~aHK 166 (311)
|||+.+|..+.--+.+|++|+.-.+...+-+=.=+-++ +++..| ...++++|.++|+=.+++|+||
T Consensus 30 a~r~~~~~~~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~----tl~~lllGv~~G~~n~w~wi~r 98 (100)
T TIGR02230 30 ARKNATRSIWEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSW----TLTMLIVGVVIGCLNAWHWVSR 98 (100)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 33445788888889999999865543333222222232 343333 2335667777788788888887
No 8
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=86.25 E-value=2.3 Score=41.80 Aligned_cols=43 Identities=28% Similarity=0.406 Sum_probs=34.8
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhcCCC
Q 021506 137 EVPLAEMFGTFALSVGAAVGMEFWARWAHKALWHA-SLWHMHESHHR 182 (311)
Q Consensus 137 ~~p~~eMl~~~al~lga~v~MEfvA~~aHKyImHG-~LW~~H~sHH~ 182 (311)
|.||-..+..+.+++ +.-||.=||+||++=|- ..|++|+-||.
T Consensus 122 ~~gw~~~~~~i~~fl---fF~Df~iYw~HR~lH~~~vy~~LH~~HH~ 165 (312)
T KOG0872|consen 122 EYGWFLLFVSIFLFL---FFTDFGIYWAHRELHHRGVYKRLHKPHHI 165 (312)
T ss_pred cccHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHhhhcchhhh
Confidence 788887776665543 46799999999999887 57999999995
No 9
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=85.14 E-value=4.7 Score=36.05 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=34.2
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhhhhHHHHHHHhhhheeeccC--CCccHHHH-HHHHHHHHHHHHHH
Q 021506 91 RVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEG--GEVPLAEM-FGTFALSVGAAVGM 157 (311)
Q Consensus 91 ~~~~~~~~~~~e~~ty~~aa~~ss~g~~~~a~~a~y~rf~~~~~~--g~~p~~eM-l~~~al~lga~v~M 157 (311)
.|++|+.|+ |+-++||-....+++.-=|+|-.+. .|+|-... +.+++++..+++|.
T Consensus 56 ~Vs~RM~rR-----------m~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGi 114 (153)
T PF11947_consen 56 VVSNRMLRR-----------MAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGI 114 (153)
T ss_pred HHHHHHHHH-----------HHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhh
Confidence 566777664 4456677666666666666666653 67776666 55555555556654
No 10
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=79.36 E-value=11 Score=36.97 Aligned_cols=62 Identities=19% Similarity=0.403 Sum_probs=42.3
Q ss_pred hHHHHHHHhhhh-eeeccCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhcCCC
Q 021506 118 TSMAVMAVYYRF-WWQMEGGEV--PLAEMFGTFALSVGAAVGMEFWARWAHKALWHASLW-HMHESHHR 182 (311)
Q Consensus 118 ~~~a~~a~y~rf-~~~~~~g~~--p~~eMl~~~al~lga~v~MEfvA~~aHKyImHG~LW-~~H~sHH~ 182 (311)
.-.-+...|+.. .|.+..+.- ++.+|+.-+++. ++.-|++=||.||-.=|+++- .+|+-||+
T Consensus 92 ~~p~~~~~y~~~~~~~~~~~~plPt~~~~l~~l~i~---~liEd~~fY~~HRL~H~~~~Yk~iHKvHHe 157 (283)
T KOG0873|consen 92 VLPLTLVSYPFVEWFGLPSGAPLPSWKEMLAQLVVF---FLIEDIGFYWSHRLFHHKWLYKYIHKVHHE 157 (283)
T ss_pred HhhHHHHhHHHHHHhCCCcCCCCCcHHHHHHHHHHH---HHHHHHHHHHHHHHhcchHHHHHHHhhhhc
Confidence 334445566666 344544333 477888766554 457789999999988888887 67888876
No 11
>PLN02434 fatty acid hydroxylase
Probab=78.92 E-value=5.9 Score=37.50 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=33.2
Q ss_pred HHHHHHHhhhhhhheecccccCcCCCCCCCCcHHH-HHHHHHHHcccCCCCCC
Q 021506 223 AGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYF-RRVAAAHQLHHSDKFHG 274 (311)
Q Consensus 223 iGLGITlYGiaYffvHDglVHqRfp~~~~~~~~Yl-rri~~AH~lHH~~Ke~G 274 (311)
..+|+.++-++=-.+|--+-|-+ +++++. +.....|..||..+.|.
T Consensus 87 ~~~G~~~wtl~EY~lHRflfH~~------p~~~~~~~~hfllHg~HH~~P~D~ 133 (237)
T PLN02434 87 VAFGVFIWTLLEYILHRFLFHIK------TKSYWGNTAHYLLHGCHHKHPMDG 133 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC------CcchHHHHHHHHHHHHhhcCCCCC
Confidence 44677777777777888888866 345554 56677999999876543
No 12
>PRK03557 zinc transporter ZitB; Provisional
Probab=74.28 E-value=29 Score=32.95 Aligned_cols=69 Identities=20% Similarity=0.289 Sum_probs=32.9
Q ss_pred HHHHHHHhhhh-h-------hhHHHHHHHHHhhhhhHHHHHHHh---hhheeeccCCCccHHHHHHHHHHHHHHHHHHHH
Q 021506 91 RVAEKLARKRS-E-------RFTYLVAAVMSSFGITSMAVMAVY---YRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEF 159 (311)
Q Consensus 91 ~~~~~~~~~~~-e-------~~ty~~aa~~ss~g~~~~a~~a~y---~rf~~~~~~g~~p~~eMl~~~al~lga~v~MEf 159 (311)
-++.|+++|.. + |..++. +...++.+..+++..+| .|+ .++-+++...|+ .+.+.+++.-++
T Consensus 65 l~a~~~s~kp~d~~hpyG~~r~E~l~-al~~~~~l~~~~~~i~~eai~~l---~~~~~~~~~~~~---~v~~~~~~~~~~ 137 (312)
T PRK03557 65 LLAVQFSRRPPTIRHTFGWLRLTTLA-AFVNAIALVVITILIVWEAIERF---RTPRPVAGGMMM---AIAVAGLLANIL 137 (312)
T ss_pred HHHHHHhcCCCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---cCCccccchHHH---HHHHHHHHHHHH
Confidence 45677777664 4 444444 44444555555555444 344 233333322222 233344555566
Q ss_pred HHHHHHH
Q 021506 160 WARWAHK 166 (311)
Q Consensus 160 vA~~aHK 166 (311)
..|+.++
T Consensus 138 ~~~~~~~ 144 (312)
T PRK03557 138 SFWLLHH 144 (312)
T ss_pred HHHHHhc
Confidence 6665553
No 13
>PLN02220 delta-9 acyl-lipid desaturase
Probab=73.97 E-value=6.6 Score=38.09 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=19.8
Q ss_pred CcCCCCCCCCcHHHHHHHH----HHHcccCCCCCCcceeE
Q 021506 244 KRFPVGPIADVPYFRRVAA----AHQLHHSDKFHGVPYGL 279 (311)
Q Consensus 244 qRfp~~~~~~~~Ylrri~~----AH~lHH~~Ke~Gv~FG~ 279 (311)
|.|...-.++|-++-.+.. =|--||.-+.+. .+|+
T Consensus 222 rpy~~~d~srN~~~lallt~GEgwHNnHHafP~sa-r~G~ 260 (299)
T PLN02220 222 RTWKTKDTSRNVWWLSLFTMGESWHNNHHAFESSA-RQGL 260 (299)
T ss_pred CCCCCCCCcchhHHHHHHhccccccccccCCccch-hhCC
Confidence 4555555555545444433 599999765433 4554
No 14
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=73.03 E-value=39 Score=31.69 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=22.7
Q ss_pred ccceehhhhHHHHHHHHHhhccccCCchhHHHHHHHHHHHhhhhhhheec
Q 021506 190 LNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHD 239 (311)
Q Consensus 190 ~NDlFAiifAvPAIaLi~~G~~~~g~~~~l~fgiGLGITlYGiaYffvHD 239 (311)
+||++.-..++.++.+..+|+. +..-..++.+|+.+....|..+-|
T Consensus 155 ~~D~~~s~~vl~~~~~~~~g~~----~~D~i~aiii~~~il~~~~~i~~~ 200 (299)
T PRK09509 155 QSDVMMNGAILLALGLSWYGWH----RADALFALGIGIYILYSALRMGYE 200 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888865555555555555531 222234444555444444444444
No 15
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=68.34 E-value=79 Score=27.32 Aligned_cols=69 Identities=17% Similarity=0.085 Sum_probs=32.7
Q ss_pred eeeccCCCc--cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCccccceehhhhHHHHHHHH
Q 021506 130 WWQMEGGEV--PLAEMFGTFALSVGAAV-GMEFWARWAHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALL 206 (311)
Q Consensus 130 ~~~~~~g~~--p~~eMl~~~al~lga~v-~MEfvA~~aHKyImHG~LW~~H~sHH~p~~G~fE~NDlFAiifAvPAIaLi 206 (311)
.|++.+++. +.+.+.+.....++..+ +.=..+|+. |+++.... .+|+ +.+-=.++...++|.++.-
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~a~~i-~~~~~~~~-------~~~s---~~~~~~~a~y~~tPl~L~~ 114 (170)
T PF06930_consen 46 GWFVGNGEGIVKLTLASALIIAVIFYIFGGVFIMAYLI-HWMMKTFG-------GRPS---YKKCLAFAAYAATPLFLGG 114 (170)
T ss_pred HHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcC-------CCCC---HHHHHHHHHHHHHHHHHHH
Confidence 477766763 34444333222333333 355667776 45554432 2222 2222234666667766544
Q ss_pred Hhh
Q 021506 207 SFG 209 (311)
Q Consensus 207 ~~G 209 (311)
...
T Consensus 115 i~~ 117 (170)
T PF06930_consen 115 IVN 117 (170)
T ss_pred HHH
Confidence 444
No 16
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=66.29 E-value=37 Score=29.14 Aligned_cols=40 Identities=18% Similarity=0.385 Sum_probs=28.7
Q ss_pred HHhhhheeeccC--CCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 021506 124 AVYYRFWWQMEG--GEVPLAEMFGTFALSVGAAVGMEFWARW 163 (311)
Q Consensus 124 a~y~rf~~~~~~--g~~p~~eMl~~~al~lga~v~MEfvA~~ 163 (311)
.|-.+|.-+|+. -+.+..=|+..+.+.+-+.++..++-||
T Consensus 69 ~VqL~yFLHm~~k~~~~~~~~if~gi~va~~tv~a~~~~iw~ 110 (110)
T TIGR02908 69 AFQLYYFMHMKDKGHEVPAQFIYGGVFVTMLVVLAFTTITWW 110 (110)
T ss_pred HHHHHHheeeCCCccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456778888863 4555566677777777788888888775
No 17
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=65.64 E-value=15 Score=32.90 Aligned_cols=108 Identities=14% Similarity=0.199 Sum_probs=49.9
Q ss_pred HHHHHHHhhh-hhhhHH------HHHHHHHhhhhhHHHHHHHhhhheeeccCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 021506 91 RVAEKLARKR-SERFTY------LVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARW 163 (311)
Q Consensus 91 ~~~~~~~~~~-~e~~ty------~~aa~~ss~g~~~~a~~a~y~rf~~~~~~g~~p~~eMl~~~al~lga~v~MEfvA~~ 163 (311)
-++.|.++|+ .++++| -+++...++.+..+++...|==+..-+++.+.+... .+ +.+.+.+++...+.+++
T Consensus 36 l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si~~l~~~~~~~~~~-~~-~~~~~~~~~v~~~~~~~ 113 (268)
T TIGR01297 36 LLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAIERLINPEPEIDGG-TM-LIVAIVGLIVNLILALY 113 (268)
T ss_pred HHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccch-hH-HHHHHHHHHHHHHHHHH
Confidence 4556666666 344443 134444445455555544432222223333222221 11 22333445556666666
Q ss_pred HHHHHHHhhhhhhhhcCCCC---CCCCccccceehhhhHHHHHHHHHhh
Q 021506 164 AHKALWHASLWHMHESHHRP---REGPFELNDVFAIINAVPAIALLSFG 209 (311)
Q Consensus 164 aHKyImHG~LW~~H~sHH~p---~~G~fE~NDlFAiifAvPAIaLi~~G 209 (311)
..+. | +....+ .++.--++|++.-+.++.++.+..+|
T Consensus 114 ~~~~---~------~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~~~ 153 (268)
T TIGR01297 114 LHRV---G------HRLGSLALRAAALHVLSDALSSVGVLIGALLIYFG 153 (268)
T ss_pred HHHh---C------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5553 1 111111 12233467888776666777666666
No 18
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=63.75 E-value=59 Score=31.85 Aligned_cols=148 Identities=16% Similarity=0.253 Sum_probs=77.0
Q ss_pred HHHHHHHHhhhh-hhhHH------HHHHHHHhhhhhHHHHHHHh---hhheeeccCCCccHHHHHHHHHHHHHHHHHHHH
Q 021506 90 ARVAEKLARKRS-ERFTY------LVAAVMSSFGITSMAVMAVY---YRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEF 159 (311)
Q Consensus 90 ~~~~~~~~~~~~-e~~ty------~~aa~~ss~g~~~~a~~a~y---~rf~~~~~~g~~p~~eMl~~~al~lga~v~MEf 159 (311)
.-+|.+++||+. .|+|| ..+|..+.+-+...++..+| .||. +.-+++..+|+..- +.+++.==+
T Consensus 67 al~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~---~P~~i~~~~ml~va---~~GL~vN~~ 140 (296)
T COG1230 67 ALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLL---APPPIHYSGMLVVA---IIGLVVNLV 140 (296)
T ss_pred HHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCccchHHHH---HHHHHHHHH
Confidence 356788887765 44677 45666666655555555544 5653 34567777775422 222333333
Q ss_pred HHHHHHHHHHHhhhhhhhhcCCC--CCCC-Ccc-ccceehhhhHHHHHHHH-HhhccccCCchhHHHHHHHHHHHhhhhh
Q 021506 160 WARWAHKALWHASLWHMHESHHR--PREG-PFE-LNDVFAIINAVPAIALL-SFGFFHKGLVPGLCFGAGLGITVFGMAY 234 (311)
Q Consensus 160 vA~~aHKyImHG~LW~~H~sHH~--p~~G-~fE-~NDlFAiifAvPAIaLi-~~G~~~~g~~~~l~fgiGLGITlYGiaY 234 (311)
.+| .+|++||+ .-+| .+. ++|...-+-++.+-.++ +.|. .++.-..++.+++...--+|
T Consensus 141 ~a~------------ll~~~~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~~w----~~~Dpi~si~i~~lil~~a~ 204 (296)
T COG1230 141 SAL------------LLHKGHEENLNMRGAYLHVLGDALGSVGVIIAAIVIRFTGW----SWLDPILSIVIALLILSSAW 204 (296)
T ss_pred HHH------------HhhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CccchHHHHHHHHHHHHHHH
Confidence 344 44444331 1223 333 48888666555444333 3332 12333455666666666778
Q ss_pred hheecccccCcCCCCCCCCcHHHHHHHH
Q 021506 235 MFVHDGLVHKRFPVGPIADVPYFRRVAA 262 (311)
Q Consensus 235 ffvHDglVHqRfp~~~~~~~~Ylrri~~ 262 (311)
-.+.|- -....-..|.......+++
T Consensus 205 ~l~k~s---~~iLle~~P~~id~~~~~~ 229 (296)
T COG1230 205 PLLKES---LNILLEGVPEGIDIDKVRE 229 (296)
T ss_pred HHHHHH---HHHHhhcCCCccCHHHHHH
Confidence 777776 2222333444444444443
No 19
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=61.46 E-value=24 Score=33.90 Aligned_cols=139 Identities=14% Similarity=0.087 Sum_probs=73.6
Q ss_pred HHHHHHHhhhhhh--------hHHHHHHHHHhhhhhHHHHHHHhhhheeeccCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 021506 91 RVAEKLARKRSER--------FTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWAR 162 (311)
Q Consensus 91 ~~~~~~~~~~~e~--------~ty~~aa~~ss~g~~~~a~~a~y~rf~~~~~~g~~p~~eMl~~~al~lga~v~MEfvA~ 162 (311)
=++-|.++|+..| .-|+ ++...++-|...++...|.=+.--.. ..|.......+.+.+++++.+|.+.+
T Consensus 59 l~~l~~s~kp~d~~HpyGh~k~E~l-~sl~~~~~i~~~g~~i~~~a~~~~~~--~~~~~~~~~~~~v~l~s~~~~~~l~~ 135 (304)
T COG0053 59 LIGLRISSKPPDRDHPYGHGKAETL-ASLIVSILIFAAGFEILLEAIKRLIS--PQPVEPPLLALGVALISIVIKEALYR 135 (304)
T ss_pred HHHHHHhcCCCCCCCCCCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 4567778887654 3333 44444555555555554443333232 22222333445666777999999999
Q ss_pred HHHHHHHHh-hh-hhhhhcCCCCCCCCccccceehhhhHHHHHHHHHhhccccCCchhHHHHHHHHHHHhhhhhhheecc
Q 021506 163 WAHKALWHA-SL-WHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDG 240 (311)
Q Consensus 163 ~aHKyImHG-~L-W~~H~sHH~p~~G~fE~NDlFAiifAvPAIaLi~~G~~~~g~~~~l~fgiGLGITlYGiaYffvHDg 240 (311)
+.+|--==. +- =.-=..|| ++|++.-+-++.+++...+|+..-+...++..++-+.-+.+.+++--++..
T Consensus 136 ~~~~~~kk~~S~aL~Ada~h~--------~sD~~ts~~~lvgl~~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L 207 (304)
T COG0053 136 YLRRVGKKTNSQALIADALHH--------RSDVLTSLAVLVGLLGSLLGWPWLDPLAALLISLYILKTGFRLFKESVNEL 207 (304)
T ss_pred HHHHHHHHhCCHHHHHHhHHH--------HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888753222 10 01111222 459998888888888777774321111122233334445556666666654
No 20
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=58.36 E-value=18 Score=35.08 Aligned_cols=32 Identities=31% Similarity=0.682 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--hhh-hhhhcCCC
Q 021506 150 SVGAAVGMEFWARWAHKALWHA--SLW-HMHESHHR 182 (311)
Q Consensus 150 ~lga~v~MEfvA~~aHKyImHG--~LW-~~H~sHH~ 182 (311)
++.+++...-|.|+.|||+ |= +|. ++|.-||+
T Consensus 126 ~f~aflviDtWQYF~HRym-H~NK~LYk~iHs~HHr 160 (287)
T KOG0874|consen 126 FFAAFLVIDTWQYFLHRYM-HMNKFLYKHIHSQHHR 160 (287)
T ss_pred HHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHhhcee
Confidence 3456888899999999985 54 677 78888886
No 21
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=57.68 E-value=39 Score=30.84 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=33.5
Q ss_pred HHHHHcccCCCCCCcceeEEeecchh--hhccChHHHHHHHHHHhhhc
Q 021506 261 AAAHQLHHSDKFHGVPYGLFLGPKEL--EEVGGLEELEKEISKRIKSY 306 (311)
Q Consensus 261 ~~AH~lHH~~Ke~Gv~FG~ll~P~ky--e~vg~~~~L~~~~~r~~~~~ 306 (311)
++.|+.||..+.+. +|-+.-|=-.+ ++.+=-+.||+-|....+..
T Consensus 127 r~~H~~HH~aPh~~-~YCI~tGw~N~~Ld~~~f~~~lE~~i~~~tG~~ 173 (178)
T PF10520_consen 127 RKHHRIHHVAPHDT-NYCITTGWLNPPLDKIRFWRRLERVITFLTGVK 173 (178)
T ss_pred chhhhccccCcccC-CeEeecccchHHHHHhhHHHHHHHHHHHHhCCC
Confidence 57899999987777 89887665444 66777788888887666543
No 22
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=56.14 E-value=47 Score=29.51 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=27.6
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhhhhHHHHHHHhhhheeeccCCCccHHHH-HHHHHHHHHHHHHH
Q 021506 94 EKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEM-FGTFALSVGAAVGM 157 (311)
Q Consensus 94 ~~~~~~~~e~~ty~~aa~~ss~g~~~~a~~a~y~rf~~~~~~g~~p~~eM-l~~~al~lga~v~M 157 (311)
.+.++|++.|..+...|.++ +=+++.+|..|- +..|.-| =.|..+..|++++.
T Consensus 84 d~~A~~~~~~~~w~gl~~l~-------~q~~~l~rLTf~----e~sWDvMEPVTYfv~~~~~i~~ 137 (180)
T PF04678_consen 84 DEKAEKRARRLLWGGLALLV-------VQFGILARLTFW----EYSWDVMEPVTYFVGYGTSILG 137 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhh----ccccchhhhHHHHHhHHHHHHH
Confidence 44555666666665555444 233445555553 4555555 44555555555443
No 23
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=56.14 E-value=1e+02 Score=32.26 Aligned_cols=158 Identities=19% Similarity=0.292 Sum_probs=85.2
Q ss_pred cchHHHHHHHHHhhhhhhhHHHHHHH--HHhhhhhHHHHHHHhhhheeec-cCCCcc-------------HHHHHHHHHH
Q 021506 86 ISTAARVAEKLARKRSERFTYLVAAV--MSSFGITSMAVMAVYYRFWWQM-EGGEVP-------------LAEMFGTFAL 149 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~e~~ty~~aa~--~ss~g~~~~a~~a~y~rf~~~~-~~g~~p-------------~~eMl~~~al 149 (311)
+++++.+|...++|---.+.+.+.+. .|.+|-.- +.+-..-|+...+ +.|-.| +.-.+...++
T Consensus 268 ~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n-~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~ 346 (479)
T KOG1287|consen 268 ILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLN-SVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLL 346 (479)
T ss_pred hcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHH
Confidence 34556777777766655555544433 33444221 2333444555554 235544 3333322222
Q ss_pred HHH--------HHHHHHHHHHHHH-HHHHHhhhh--hhhhcCCCCCCCCccccceehhhhHHHHHHHHHhhccccCCchh
Q 021506 150 SVG--------AAVGMEFWARWAH-KALWHASLW--HMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPG 218 (311)
Q Consensus 150 ~lg--------a~v~MEfvA~~aH-KyImHG~LW--~~H~sHH~p~~G~fE~NDlFAiifAvPAIaLi~~G~~~~g~~~~ 218 (311)
++. ..+-+....+|.= =-.+=|.+| +=|.+|++|=+ .+-.+.++|-+..+.|+.+.+...-. .
T Consensus 347 ~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiK----vpl~~p~~~~~~~i~lvvip~~~~~~--~ 420 (479)
T KOG1287|consen 347 SIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIK----VPLFIPILFLLICIFLVVIPIISDFP--V 420 (479)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEe----eeeehHHHHHHHHHHHhheeeeecCC--c
Confidence 222 1223333333333 234556677 33556555555 55588999989999999998754311 1
Q ss_pred HHHHHHHHHHHhhhhhhheecccccCcCCCCCCCCcHHHHHH
Q 021506 219 LCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRV 260 (311)
Q Consensus 219 l~fgiGLGITlYGiaYffvHDglVHqRfp~~~~~~~~Ylrri 260 (311)
- .++|++|++-|+.+.++ ++|.+- +.++++++
T Consensus 421 ~-~~ig~~i~l~G~~~Y~~---~i~~~~------~p~~~~~~ 452 (479)
T KOG1287|consen 421 E-TLIGIGIILSGVPFYFL---FIHWKK------KPKWLRKI 452 (479)
T ss_pred c-chhHHHHHHHhhhhheE---EEEecC------CcHHHHHh
Confidence 1 35889999999876553 444443 23577666
No 24
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=50.41 E-value=1.8e+02 Score=25.79 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=56.1
Q ss_pred HhhhhhHHHHHHHhhhheeeccCCCccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhhhhhcCC----CCCCC
Q 021506 113 SSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEF--WARWAHKALWHASLWHMHESHH----RPREG 186 (311)
Q Consensus 113 ss~g~~~~a~~a~y~rf~~~~~~g~~p~~eMl~~~al~lga~v~MEf--vA~~aHKyImHG~LW~~H~sHH----~p~~G 186 (311)
..+++-...+..||-=++...+++- |-.++.+|++.+..+.=. .=++++|-+ |..=--.+|-- ....|
T Consensus 9 ~~l~~Ff~~~~~vY~~~t~~~~~~~----E~~Gt~aL~ls~~l~~mig~yl~~~~rr~--~~rPED~~daEI~dgAGe~G 82 (137)
T PF12270_consen 9 YGLAVFFLVVAVVYGFWTKWSGDGG----EWVGTVALVLSGGLALMIGFYLRFTARRI--GPRPEDREDAEIADGAGELG 82 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCC----CcchHHHHHHHHHHHHHHHHHHHHHHhhC--CCCCccccccccccCCCCcC
Confidence 3445556677788888887775443 777777777764443211 122333433 22111111111 12334
Q ss_pred CccccceehhhhHHHHHHHHHhhccccCCchhHHHHHHHHHHHhhhh
Q 021506 187 PFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMA 233 (311)
Q Consensus 187 ~fE~NDlFAiifAvPAIaLi~~G~~~~g~~~~l~fgiGLGITlYGia 233 (311)
.|...-..++.. ..+++++.+|+-. |+ +.+.+|+++++++++
T Consensus 83 fFsP~SwWPl~l-a~~~al~~lGla~-g~---Wl~~iG~~~~i~~~~ 124 (137)
T PF12270_consen 83 FFSPHSWWPLVL-AAAAALVFLGLAF-GW---WLILIGAVLLIVAVV 124 (137)
T ss_pred cCCCccHhHHHH-HHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHH
Confidence 555555555555 4456666677521 11 234566666666554
No 25
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=49.68 E-value=46 Score=33.31 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhhhhhcCCC
Q 021506 143 MFGTFALSVGAAVGMEFW----ARWAHKALWHASLWHMHESHHR 182 (311)
Q Consensus 143 Ml~~~al~lga~v~MEfv----A~~aHKyImHG~LW~~H~sHH~ 182 (311)
.+.+..+.+++.+-.|.+ -+.+|+|- +|-++|.=||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~d~~h~~~h~~~---~l~~~h~~hh~ 45 (406)
T PRK07424 5 WLQAAGLILGSILWVEIVRDSYHALAHQWN---PLYRLHNWHHR 45 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch---HHHHHHHhHHh
Confidence 355667778888888988 66666665 56699999996
No 26
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=47.64 E-value=46 Score=26.07 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=15.4
Q ss_pred HHHHHHH-HhhhhhhhHHHHHHH
Q 021506 90 ARVAEKL-ARKRSERFTYLVAAV 111 (311)
Q Consensus 90 ~~~~~~~-~~~~~e~~ty~~aa~ 111 (311)
.|+-++. ++|+..|.+++..++
T Consensus 16 ~RvGr~q~~~r~RrRrc~~~v~~ 38 (60)
T PF06072_consen 16 RRVGRQQHASRRRRRRCRLAVAI 38 (60)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 5777777 677778888865444
No 27
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=46.47 E-value=99 Score=30.03 Aligned_cols=41 Identities=12% Similarity=0.231 Sum_probs=22.4
Q ss_pred HHHHHHhhhheeeccCCCccHHHHH-HHHHHHHHHHHHHHHHH
Q 021506 120 MAVMAVYYRFWWQMEGGEVPLAEMF-GTFALSVGAAVGMEFWA 161 (311)
Q Consensus 120 ~a~~a~y~rf~~~~~~g~~p~~eMl-~~~al~lga~v~MEfvA 161 (311)
+++++.+.+..+.++ ..-||.|.. +.+++.+|....+..+-
T Consensus 70 ~~~~~~~l~~~~~~~-~~~~~le~~S~~lii~lGl~ll~r~~r 111 (279)
T PRK10019 70 IAFGGMYLSRRFTAQ-SAEPWLQLISAVIIISTAFWMFWRTWR 111 (279)
T ss_pred HHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444544433332 345888984 55556677666665543
No 28
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=42.26 E-value=26 Score=27.15 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=23.9
Q ss_pred hhhhheecccccCcCCCCCCCCcHHH------------HHHHHHHHcccC
Q 021506 232 MAYMFVHDGLVHKRFPVGPIADVPYF------------RRVAAAHQLHHS 269 (311)
Q Consensus 232 iaYffvHDglVHqRfp~~~~~~~~Yl------------rri~~AH~lHH~ 269 (311)
....+.||. +|+++...+. -|.++ ...+..|..||.
T Consensus 14 ~~~~~~H~~-~H~~~~~~~~-~n~~~~~~~~~~~~~~~~~~~~~H~~HH~ 61 (122)
T cd01060 14 GLTVLAHEL-GHRSFFRSRW-LNRLLGALLGLALGGSYGWWRRSHRRHHR 61 (122)
T ss_pred HHHHHHHHH-hhhhhhcccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 456778999 9999753222 23333 345778999996
No 29
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=41.04 E-value=1.9e+02 Score=23.30 Aligned_cols=51 Identities=24% Similarity=0.366 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhhhheeeccCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 021506 105 TYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARW 163 (311)
Q Consensus 105 ty~~aa~~ss~g~~~~a~~a~y~rf~~~~~~g~~p~~eMl~~~al~lga~v~MEfvA~~ 163 (311)
.++..|.++|-+|..+..+.=-.. .-++.|-+-+++|=+|+++.|-+..||
T Consensus 22 ~f~y~a~~aSa~iG~~i~~~rl~a--------~~~l~~~l~nlaI~igava~~~~L~~~ 72 (75)
T PF11998_consen 22 RFFYGAFGASAGIGLFIFLFRLIA--------GPDLNEALPNLAIQIGAVALFAFLFRW 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--------CccHHHHhhhHhHHHHHHHHHHHHHHH
Confidence 456667777777665544321111 557778999999999999998877665
No 30
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=39.84 E-value=82 Score=27.50 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=29.3
Q ss_pred HHHHHHhhhhhHHHHHHHhhhheeeccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021506 108 VAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKALWHASL 173 (311)
Q Consensus 108 ~aa~~ss~g~~~~a~~a~y~rf~~~~~~g~~p~~eMl~~~al~lga~v~MEfvA~~aHKyImHG~L 173 (311)
+.|.++=+|...+.+-.+-+-+.|+ ..+ +. +.+ +.+++.+-..+|+.|||+..--+
T Consensus 59 ~~AtiaD~~La~~~iW~~~~~~~~~----~~~---~~-~~a--llsA~~i~v~E~fFH~yl~~~~~ 114 (136)
T PF10710_consen 59 IVATIADFGLAFLVIWLMGYILTGN----YVS---IA-WAA--LLSAVLIGVGEYFFHRYLLRNVL 114 (136)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcc----chh---HH-HHH--HHHHHHHHHHHHHHHHHHHHccc
Confidence 3455556666655555554444441 111 11 111 12334555689999999976543
No 31
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=38.24 E-value=31 Score=33.01 Aligned_cols=50 Identities=24% Similarity=0.250 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhhhhheecccccCcCCCCCCCC------------cHHHHHHHHHHHcccC
Q 021506 219 LCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIAD------------VPYFRRVAAAHQLHHS 269 (311)
Q Consensus 219 l~fgiGLGITlYGiaYffvHDglVHqRfp~~~~~~------------~~Ylrri~~AH~lHH~ 269 (311)
++.++-+|.++.-..+.+.||. .|+.+--.+..| .||.-..+.-|..||.
T Consensus 45 ll~a~vi~~~~~~~l~~l~Hd~-~H~~~f~~~~~N~~~g~~~~~~~g~p~~~~~r~~H~~HH~ 106 (289)
T cd03508 45 LLVAYFFGGTINHSLFLAIHEI-SHNLAFGKPLWNRLFGIFANLPIGVPYSISFKKYHLEHHR 106 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHhhcCChHHHHHHHHHHHHHhcCChhhHHHHHHHHhcc
Confidence 3444556666655566777887 455542111111 1232245778999996
No 32
>PLN02220 delta-9 acyl-lipid desaturase
Probab=36.38 E-value=62 Score=31.58 Aligned_cols=36 Identities=31% Similarity=0.599 Sum_probs=24.4
Q ss_pred HHHHHHHhhhhhhheecccccCcCCCCCCCCcHHHHH----------------HHHHHHcccC
Q 021506 223 AGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRR----------------VAAAHQLHHS 269 (311)
Q Consensus 223 iGLGITlYGiaYffvHDglVHqRfp~~~~~~~~Ylrr----------------i~~AH~lHH~ 269 (311)
.|+|||+ ..|=.+.|+=|+.. +.+|. ..+.|++||.
T Consensus 68 t~lGiT~------GyHRl~sHrsfka~-----~~l~~~la~~g~~a~Qgs~~~Wv~~HR~HH~ 119 (299)
T PLN02220 68 TGLSITF------SYHRNLAHRSFKLP-----KWLEYPFAYSALFALQGDPIDWVSTHRFHHQ 119 (299)
T ss_pred HHHHHHH------HHHHHHHhhcCcCc-----HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3566666 36888888888743 33433 3489999995
No 33
>PLN02505 omega-6 fatty acid desaturase
Probab=34.65 E-value=43 Score=33.59 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=0.0
Q ss_pred ccccceehhhhHHHHHHHHHhhccccC-------------CchhHHHHHHHHHHHhhhhhhheecccccCcCCCCCCCCc
Q 021506 188 FELNDVFAIINAVPAIALLSFGFFHKG-------------LVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADV 254 (311)
Q Consensus 188 fE~NDlFAiifAvPAIaLi~~G~~~~g-------------~~~~l~fgiGLGITlYGiaYffvHDglVHqRfp~~~~~~~ 254 (311)
||+|+.=++..-+..++++...+...- +++..++.+|..++. .+.+.||. -|+.+ ...+.=|
T Consensus 45 f~~s~~rs~~~v~~d~~~i~~~~~~a~~~~~~~p~~~~~~l~~~~~~~~G~~~~~---l~vl~HDc-gH~s~-~~~~~lN 119 (381)
T PLN02505 45 FKRSVLRSFSYLVYDLLIAALLYYVATNYIPLLPGPLSYVAWPLYWAAQGCVLTG---VWVIAHEC-GHHAF-SDYQWLD 119 (381)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH---HHHHHHhh-cchhh-hCChHHH
Q ss_pred HHH------------HHHHHHHHcccCCCCCCcceeEEeecchhhhccChHHH
Q 021506 255 PYF------------RRVAAAHQLHHSDKFHGVPYGLFLGPKELEEVGGLEEL 295 (311)
Q Consensus 255 ~Yl------------rri~~AH~lHH~~Ke~Gv~FG~ll~P~kye~vg~~~~L 295 (311)
..+ ...+.-|..||.. -+....--.+.|+++++.....++
T Consensus 120 ~~vG~i~~~~ll~p~~~Wr~~H~~HH~~-tn~~~~D~~~~P~~~~~~~~~~~~ 171 (381)
T PLN02505 120 DTVGLVLHSALLVPYFSWKYSHRRHHSN-TGSLERDEVFVPKKKSALPWYSKY 171 (381)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc-cCCCCCCccccCcCHHHHhHHHHH
No 34
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=34.61 E-value=64 Score=29.84 Aligned_cols=36 Identities=17% Similarity=0.043 Sum_probs=20.3
Q ss_pred hhhhheecccccCcCCCCCCCCcHHH------------HHHHHHHHcccC
Q 021506 232 MAYMFVHDGLVHKRFPVGPIADVPYF------------RRVAAAHQLHHS 269 (311)
Q Consensus 232 iaYffvHDglVHqRfp~~~~~~~~Yl------------rri~~AH~lHH~ 269 (311)
..+.+.||. .|+.+--.+.- |..+ ...+..|..||.
T Consensus 57 ~~~~~~He~-~H~~~~~~~~~-N~~~g~l~~~~~~~~~~~~~~~H~~HH~ 104 (285)
T cd03511 57 ALFARWHEC-VHGTAFATRWL-NDAVGQIAGLMILLPPDFFRWSHARHHR 104 (285)
T ss_pred HHHHHHHHh-hcccccCCchH-HHHHHHHHHHHhcCChHHHHHHHHHHhc
Confidence 456778887 67664221111 1111 345788999995
No 35
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=33.76 E-value=2.7e+02 Score=32.14 Aligned_cols=65 Identities=15% Similarity=0.105 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHhh--h-heeec----cCCCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021506 104 FTYLVAAVMSSFGITSMAVMAVYY--R-FWWQM----EGGEV----PLAEMFGTFALSVGAAVGMEFWARWAHKAL 168 (311)
Q Consensus 104 ~ty~~aa~~ss~g~~~~a~~a~y~--r-f~~~~----~~g~~----p~~eMl~~~al~lga~v~MEfvA~~aHKyI 168 (311)
..-.++++++-..|-|=.+.|++| . =.|+. +|++. .+..++..+++++.+++..-.+..+..|++
T Consensus 786 ~~l~l~~l~~l~~iWsd~~~a~s~Ld~i~LW~~t~~~~g~~~~~~itl~~ll~AllIliv~~~l~r~l~~lle~~l 861 (1109)
T PRK10929 786 SILTLIALLSVIVLWSEIHSAFGFLENISLWDVTSTVQGVESLQPITLGSVLIAILVFIITTQLVRNLPALLELAL 861 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcceeEEeeeceeccccceeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777877878766 2 35773 45543 344444444444444544444444444443
No 36
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=32.40 E-value=87 Score=25.96 Aligned_cols=32 Identities=19% Similarity=0.495 Sum_probs=25.8
Q ss_pred HHHHHHHhhhhhHHHHHHHhhhheeeccCCCccHHHH
Q 021506 107 LVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEM 143 (311)
Q Consensus 107 ~~aa~~ss~g~~~~a~~a~y~rf~~~~~~g~~p~~eM 143 (311)
.++.+|-.+-++.++-+.|||= .+|++|+.+.
T Consensus 33 W~~~~m~~lm~~Gl~WlvvyYl-----~~~~~P~~~l 64 (87)
T PRK02251 33 WFVPLFVALMIIGLIWLVVYYL-----SNGSLPIPAL 64 (87)
T ss_pred hHHHHHHHHHHHHHHHHHHHhh-----hCCCcCcccc
Confidence 4677888888999999999995 4688886655
No 37
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=32.27 E-value=2.5e+02 Score=24.54 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=24.9
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021506 135 GGEVPLAEMFGTFALSVGAAVGMEFWARWAHK 166 (311)
Q Consensus 135 ~g~~p~~eMl~~~al~lga~v~MEfvA~~aHK 166 (311)
.|++++..+...+.+..++++|+-.-.|+.+|
T Consensus 188 ~g~~~~~~~~~~~~~~~~~~~G~~lG~~~~~~ 219 (240)
T PF01925_consen 188 LGDVDWPMLLLSLILLPGAFLGAFLGAKLARK 219 (240)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999887776677777788888887776655
No 38
>PF12447 DUF3683: Protein of unknown function (DUF3683); InterPro: IPR022153 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF02754 from PFAM, PF01565 from PFAM, PF02913 from PFAM.
Probab=29.89 E-value=24 Score=30.64 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=16.3
Q ss_pred hhhhheecccccCcCCCCCCCCcHHHH
Q 021506 232 MAYMFVHDGLVHKRFPVGPIADVPYFR 258 (311)
Q Consensus 232 iaYffvHDglVHqRfp~~~~~~~~Ylr 258 (311)
|.|.++=|+.||+| ||||.
T Consensus 47 mL~evlGDiwvv~R--------NPyL~ 65 (115)
T PF12447_consen 47 MLFEVLGDIWVVRR--------NPYLQ 65 (115)
T ss_pred HHHHHhcceeeeec--------CchhH
Confidence 57888999999999 77874
No 39
>PF14110 DUF4282: Domain of unknown function (DUF4282)
Probab=29.75 E-value=2.6e+02 Score=22.29 Aligned_cols=59 Identities=14% Similarity=-0.013 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHhhhheeeccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021506 104 FTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKALW 169 (311)
Q Consensus 104 ~ty~~aa~~ss~g~~~~a~~a~y~rf~~~~~~g~~p~~eMl~~~al~lga~v~MEfvA~~aHKyIm 169 (311)
.-|.++.+...++..++.+.+. +.++..+....+..+++.+..++.++..+|..=..++
T Consensus 16 ~~Y~l~li~i~l~~~~~~~~~~-------~~~~~~~~~~g~~~~l~~~~~~l~~~i~~Ri~~E~~i 74 (90)
T PF14110_consen 16 VLYWLGLILIVLSGLSGIFSGF-------MAGMGFSFGGGFLGLLLGPLGFLLGIILWRIMLEFLI 74 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777766666655555554 4444444455555566677778888888887655444
No 40
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=26.47 E-value=1.3e+02 Score=30.71 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=22.3
Q ss_pred hhcCCCCCCCCccccceehhhhHHHHHHHHHh
Q 021506 177 HESHHRPREGPFELNDVFAIINAVPAIALLSF 208 (311)
Q Consensus 177 H~sHH~p~~G~fE~NDlFAiifAvPAIaLi~~ 208 (311)
|+--|+-.+..+.+.|.|++.| ..++.+.+-
T Consensus 264 selshraa~~slpLrdaFaVlF-FvsVGmlf~ 294 (408)
T COG4651 264 SELSHRAAEDSLPLRDAFAVLF-FVSVGMLFD 294 (408)
T ss_pred hhhhHHHHHhccCHHHHHHHHH-HHHhhhhcC
Confidence 4444566678899999999999 556655543
No 41
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=25.50 E-value=1.9e+02 Score=25.43 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=20.5
Q ss_pred hhhheeeccCCCccHHHHHHHHHHHHHHHH
Q 021506 126 YYRFWWQMEGGEVPLAEMFGTFALSVGAAV 155 (311)
Q Consensus 126 y~rf~~~~~~g~~p~~eMl~~~al~lga~v 155 (311)
..|.-=+|..|+.|-.+|+-.+++.+|+++
T Consensus 54 l~~~~~~~~~G~~p~~~l~~~~~~~~gg~L 83 (148)
T PRK11463 54 LLRAQRKLARGELPAAELLDGLLLAVAGVL 83 (148)
T ss_pred HHHHHHHHHCCCCcHHHHHHhHHHHHHHHH
Confidence 334444567899999999776666666543
No 42
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=24.96 E-value=1.1e+02 Score=32.01 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=14.8
Q ss_pred ceeEEEEeccccccccccccch
Q 021506 55 SFTVCFVLEEKKQSTQIETFTE 76 (311)
Q Consensus 55 ~~~~c~~~~~~~~~~~~~~~~~ 76 (311)
...-|.-+|-.|++......+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~ 84 (526)
T PLN03198 63 AAVQCISAEVQKNSNSQEAAEA 84 (526)
T ss_pred hhhhheeHHhccCCcccccccc
Confidence 4577988888888765544333
No 43
>PF08426 ICE2: ICE2; InterPro: IPR013635 ICE2 is a fungal ER protein which has been shown to play an important role in forming/maintaining the cortical ER []. It has also been identified as a protein which is necessary for nuclear inner membrane targeting [].
Probab=23.57 E-value=1.4e+02 Score=30.81 Aligned_cols=52 Identities=19% Similarity=0.421 Sum_probs=34.2
Q ss_pred hhhhhhHHHHHHHHHhhhhhHHHHHHHh--hhheeeccCCCccHHHHHHHHHHHHH
Q 021506 99 KRSERFTYLVAAVMSSFGITSMAVMAVY--YRFWWQMEGGEVPLAEMFGTFALSVG 152 (311)
Q Consensus 99 ~~~e~~ty~~aa~~ss~g~~~~a~~a~y--~rf~~~~~~g~~p~~eMl~~~al~lg 152 (311)
+||| +|++...+.|-+|.+.++--.| |-|-|+.+-.+-.+.-...|.+++++
T Consensus 145 ~rSd--~W~I~~Li~Sg~vit~s~YfLyRIy~fp~~is~~~AtLiG~~lT~~~~L~ 198 (412)
T PF08426_consen 145 GRSD--SWMIVSLIASGSVITASLYFLYRIYVFPWTISNLDATLIGVTLTSVVFLG 198 (412)
T ss_pred CCCc--hhHHHHHHHHHHHHHHHHHHHHHhhccccccCcccHHHHHHHHHHHHHHH
Confidence 3666 9999999999999888876654 55667665444333333444455554
No 44
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=22.94 E-value=2.4e+02 Score=23.85 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=22.4
Q ss_pred HhhhheeeccCCCccHHHHHHHHHHHHHHHH
Q 021506 125 VYYRFWWQMEGGEVPLAEMFGTFALSVGAAV 155 (311)
Q Consensus 125 ~y~rf~~~~~~g~~p~~eMl~~~al~lga~v 155 (311)
+..|.--+|..|+.|-.+|+-.+++.+|+++
T Consensus 49 ~~~~~~~~~~~g~~p~~~~~~~~~~~~gg~L 79 (119)
T PF04186_consen 49 ALRRLQQSLRQGEMPGEELLDGALLAVGGVL 79 (119)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHHHHH
Confidence 4444444567899999999877777777654
No 45
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=22.89 E-value=81 Score=26.72 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=23.1
Q ss_pred hhhhh-hHHHHHHHHHhhhhhHHHHHHHhhhhe
Q 021506 99 KRSER-FTYLVAAVMSSFGITSMAVMAVYYRFW 130 (311)
Q Consensus 99 ~~~e~-~ty~~aa~~ss~g~~~~a~~a~y~rf~ 130 (311)
||++- ..|++++.+.-+++.+...++.|+||-
T Consensus 16 ~~~d~~~~Wl~~i~~~~v~~~t~~~l~iYp~f~ 48 (97)
T PF04834_consen 16 KKSDMPNYWLYAIGIVLVFCSTFFSLAIYPCFD 48 (97)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 44554 467777777777777777888898864
No 46
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=22.39 E-value=3.1e+02 Score=22.74 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=18.6
Q ss_pred HHHHHHHhhhheeeccC-CCccHHHHHHHHHHH
Q 021506 119 SMAVMAVYYRFWWQMEG-GEVPLAEMFGTFALS 150 (311)
Q Consensus 119 ~~a~~a~y~rf~~~~~~-g~~p~~eMl~~~al~ 150 (311)
+.+=..|..+|.-+|.. ++-.|.-+...|.++
T Consensus 43 A~iQi~vqL~~FlHl~~~~~~~~n~~~l~Ft~~ 75 (96)
T TIGR02847 43 AVVQILVHLVFFLHLNTSSEQRWNLISLLFTIL 75 (96)
T ss_pred HHHHHHHHHHHHhhccCccccchHHHHHHHHHH
Confidence 44455678888889964 455555443333333
No 47
>PLN02598 omega-6 fatty acid desaturase
Probab=21.21 E-value=1.3e+02 Score=30.65 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=22.2
Q ss_pred HHHHHhhhhhhheecccccCcCCCCCCCCcHHH----------------HHHHHHHHcccC
Q 021506 225 LGITVFGMAYMFVHDGLVHKRFPVGPIADVPYF----------------RRVAAAHQLHHS 269 (311)
Q Consensus 225 LGITlYGiaYffvHDglVHqRfp~~~~~~~~Yl----------------rri~~AH~lHH~ 269 (311)
+|..+-| .+.+.||- .|+.|- +++.+ ...+.-|..||.
T Consensus 132 ~G~~~~~-l~vl~Hec-~H~s~~-----~~~~lN~~vG~~~~~~ll~p~~~wr~~H~~HH~ 185 (421)
T PLN02598 132 LGTAITG-FFVIGHDC-GHNSFS-----KNQLVEDIVGTIAFTPLIYPFEPWRIKHNTHHA 185 (421)
T ss_pred HHHHHHH-HHHHHHhc-cccCCC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 4444433 47778887 566652 12222 345677999996
No 48
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.78 E-value=71 Score=32.55 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=12.8
Q ss_pred eehhhhHHHHHHHHHhhc
Q 021506 193 VFAIINAVPAIALLSFGF 210 (311)
Q Consensus 193 lFAiifAvPAIaLi~~G~ 210 (311)
+++++|.+.+++++.|.+
T Consensus 192 vl~~~fvl~tlaivLFPL 209 (372)
T KOG2927|consen 192 VLGVLFVLVTLAIVLFPL 209 (372)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 345677777888887775
No 49
>COG5547 Small integral membrane protein [Function unknown]
Probab=20.76 E-value=1e+02 Score=24.32 Aligned_cols=18 Identities=33% Similarity=0.798 Sum_probs=14.8
Q ss_pred hhhhHHHHHHHHHhhccc
Q 021506 195 AIINAVPAIALLSFGFFH 212 (311)
Q Consensus 195 AiifAvPAIaLi~~G~~~ 212 (311)
.+++...|++++.+|++.
T Consensus 14 glvglliAili~t~GfwK 31 (62)
T COG5547 14 GLVGLLIAILILTFGFWK 31 (62)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567888999999999753
No 50
>COG4682 Predicted membrane protein [Function unknown]
Probab=20.59 E-value=86 Score=27.77 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=24.5
Q ss_pred hhhhHHHHHHHHHhhccccCCchhH--HHHHHHHHHHhhhh
Q 021506 195 AIINAVPAIALLSFGFFHKGLVPGL--CFGAGLGITVFGMA 233 (311)
Q Consensus 195 AiifAvPAIaLi~~G~~~~g~~~~l--~fgiGLGITlYGia 233 (311)
.-.-++.+|.|+..|+++--+.... ..++++++++||-.
T Consensus 79 C~~~~lisigll~vGv~Na~la~sek~~y~vaffv~lfGa~ 119 (128)
T COG4682 79 CQLVALISIGLLFVGVWNATLALSEKGFYGVAFFVSLFGAM 119 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Confidence 3445688999999998652111100 25677888888753
No 51
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=20.50 E-value=1.1e+02 Score=26.59 Aligned_cols=26 Identities=23% Similarity=0.453 Sum_probs=17.3
Q ss_pred HHHHHHHhhccccCCchhHHHHHHHHHHHhhhh
Q 021506 201 PAIALLSFGFFHKGLVPGLCFGAGLGITVFGMA 233 (311)
Q Consensus 201 PAIaLi~~G~~~~g~~~~l~fgiGLGITlYGia 233 (311)
-.|+++++||. +.+.+||.|++|-|-
T Consensus 10 a~Ia~mVlGFi-------~fWPlGla~Lay~iw 35 (115)
T PF11014_consen 10 AWIAAMVLGFI-------VFWPLGLALLAYMIW 35 (115)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 35778888863 345578888776554
No 52
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=20.07 E-value=79 Score=26.24 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=9.1
Q ss_pred ehhhhHHHHHHHHHhhc
Q 021506 194 FAIINAVPAIALLSFGF 210 (311)
Q Consensus 194 FAiifAvPAIaLi~~G~ 210 (311)
|+|+.++.+.+++..++
T Consensus 48 FcI~tvlfsFvfLs~kl 64 (90)
T PF11674_consen 48 FCIFTVLFSFVFLSLKL 64 (90)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34555555555555553
Done!