Query 021506
Match_columns 311
No_of_seqs 142 out of 214
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 05:08:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h90_A Ferrous-iron efflux pum 88.4 0.34 1.2E-05 43.1 3.8 75 91-167 50-131 (283)
2 3j1z_P YIIP, cation efflux fam 87.3 0.54 1.9E-05 42.7 4.5 151 91-262 59-222 (306)
3 3llq_A Aquaporin Z 2; aquapori 37.3 24 0.00082 32.1 3.5 13 182-194 17-30 (256)
4 2ki0_A DS119; beta-alpha-beta, 31.7 26 0.00089 23.6 2.1 16 289-305 10-26 (36)
5 3m73_A Tellurite resistance pr 14.4 6.5E+02 0.022 22.5 10.4 36 139-174 35-70 (314)
6 3rhw_A Avermectin-sensitive gl 12.2 3.4E+02 0.012 24.4 5.8 31 114-144 247-279 (347)
7 2kdr_X NS4B, P27, non-structur 12.1 1.2E+02 0.004 19.8 1.8 14 108-121 7-20 (28)
8 3tlw_A GLR4197 protein, GLIC; 12.1 4.5E+02 0.015 23.3 6.5 46 114-159 230-277 (321)
9 3ixz_A Potassium-transporting 11.3 4.6E+02 0.016 27.6 7.1 61 104-167 962-1023(1034)
10 3dra_B Geranylgeranyltransfera 9.6 2.9E+02 0.01 26.4 4.6 42 102-143 159-218 (390)
No 1
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=88.40 E-value=0.34 Score=43.09 Aligned_cols=75 Identities=8% Similarity=0.073 Sum_probs=40.4
Q ss_pred HHHHHHHhhh-hhhhHH------HHHHHHHhhhhhHHHHHHHhhhheeeccCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 021506 91 RVAEKLARKR-SERFTY------LVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARW 163 (311)
Q Consensus 91 ~~~~~~~~~~-~e~~ty------~~aa~~ss~g~~~~a~~a~y~rf~~~~~~g~~p~~eMl~~~al~lga~v~MEfvA~~ 163 (311)
-++-|.++|+ .++.+| -+++...++.+..+++..+|-=+..-+++.+++...+ .+.+.+.+++..++.+|+
T Consensus 50 l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~eai~~l~~~~~~~~~~~--~l~v~~~s~~v~~~~~~~ 127 (283)
T 3h90_A 50 LLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGV--GVIVTIVALICTIILVSF 127 (283)
T ss_dssp HHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSCCCCCCCC--CTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcchH--HHHHHHHHHHHHHHHHHH
Confidence 4566777776 344333 3566666666766666665543332244444332221 123334456667777777
Q ss_pred HHHH
Q 021506 164 AHKA 167 (311)
Q Consensus 164 aHKy 167 (311)
.+|.
T Consensus 128 ~~~~ 131 (283)
T 3h90_A 128 QRWV 131 (283)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 2
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=87.29 E-value=0.54 Score=42.70 Aligned_cols=151 Identities=19% Similarity=0.144 Sum_probs=71.3
Q ss_pred HHHHHHHhhhh-h-------hhHHHHHHHHHhhhhhHHHHHHHhhhheeeccCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 021506 91 RVAEKLARKRS-E-------RFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWAR 162 (311)
Q Consensus 91 ~~~~~~~~~~~-e-------~~ty~~aa~~ss~g~~~~a~~a~y~rf~~~~~~g~~p~~eMl~~~al~lga~v~MEfvA~ 162 (311)
-++-|.++|+. + |..| ++|+..++.+..+++..+|-=...-+++.++.-..+. +.+.+++++..+...+
T Consensus 59 l~~~~~s~k~~d~~~pyG~~R~E~-l~al~~~~~l~~~~~~i~~eai~~l~~p~~~~~~~~~--~~v~~~~~~~~~~~~~ 135 (306)
T 3j1z_P 59 FIAIRYAIVPADHDHRYGHGKAEP-LAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATLG--VVVSVVAIVLTLALVL 135 (306)
T ss_dssp HHHHHHHTSCCCCTTSSCCTTHHH-HHHHHHHHHHHHHHHHHHHHHHHTTTTTCCGGGTTCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCCCchhhHHH-HHHHHHHHHHHHHHHHHHHHhhhheecCCCccccccc--hhhhhhHhhhhHHHHH
Confidence 45667777653 3 3444 4566667777777776666544443455444333331 2334444566666666
Q ss_pred HHHHHHHHh-h--hh--hhhhcCCCCCCCCccccceehhhhHHHHHHHHHhhccccCCchhHHHHHHHHHHHhhhhhhhe
Q 021506 163 WAHKALWHA-S--LW--HMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFV 237 (311)
Q Consensus 163 ~aHKyImHG-~--LW--~~H~sHH~p~~G~fE~NDlFAiifAvPAIaLi~~G~~~~g~~~~l~fgiGLGITlYGiaYffv 237 (311)
+.++.--.. . +. .+| -++|++.-+.++.++++..+|....+...++++++-+..+.|.+++--+
T Consensus 136 ~~~~~~~~~~s~~l~a~~~h-----------~~~D~l~s~~vli~~~~~~~g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~ 204 (306)
T 3j1z_P 136 LQKRALAATNSTVVEADSLH-----------YKSDLFLNAAVLLALVLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSI 204 (306)
T ss_dssp HHHHHHTTSCCHHHHHHHHH-----------HHHHTTCCTTCCCTTSSCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCCHHHHHHHHh-----------hcchhhhhhHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555432110 0 10 111 2578775544444444444443211111122233333344445544444
Q ss_pred ecccccCcCCCCCCCCcHHHHHHHH
Q 021506 238 HDGLVHKRFPVGPIADVPYFRRVAA 262 (311)
Q Consensus 238 HDglVHqRfp~~~~~~~~Ylrri~~ 262 (311)
... .+..++....+++++
T Consensus 205 ~~L-------l~~~~~~~~~~~I~~ 222 (306)
T 3j1z_P 205 QAL-------LDRELDEDTRQRIKL 222 (306)
T ss_dssp HHH-------TTCCCCHHHHHHHHH
T ss_pred HHH-------hCcccchhHHHHHHH
Confidence 443 455555556666654
No 3
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=37.28 E-value=24 Score=32.07 Aligned_cols=13 Identities=15% Similarity=-0.005 Sum_probs=1.4
Q ss_pred CCCCC-Ccccccee
Q 021506 182 RPREG-PFELNDVF 194 (311)
Q Consensus 182 ~p~~G-~fE~NDlF 194 (311)
++|+. .|.+|.+.
T Consensus 17 ~~~~~~~~~~~~l~ 30 (256)
T 3llq_A 17 HHHENLYFQSYVMG 30 (256)
T ss_dssp ------------CH
T ss_pred ccchhhhhhHHHHH
Confidence 34444 78888876
No 4
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=31.66 E-value=26 Score=23.61 Aligned_cols=16 Identities=50% Similarity=0.769 Sum_probs=10.3
Q ss_pred ccC-hHHHHHHHHHHhhh
Q 021506 289 VGG-LEELEKEISKRIKS 305 (311)
Q Consensus 289 vg~-~~~L~~~~~r~~~~ 305 (311)
||| +|||+| ++...|.
T Consensus 10 vggtpeelkk-lkeeakk 26 (36)
T 2ki0_A 10 VGGTPEELKK-LKEEAKK 26 (36)
T ss_dssp BCCCHHHHHH-HHHHHHH
T ss_pred ecCCHHHHHH-HHHHHHh
Confidence 555 899988 5444443
No 5
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=14.40 E-value=6.5e+02 Score=22.50 Aligned_cols=36 Identities=25% Similarity=0.132 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021506 139 PLAEMFGTFALSVGAAVGMEFWARWAHKALWHASLW 174 (311)
Q Consensus 139 p~~eMl~~~al~lga~v~MEfvA~~aHKyImHG~LW 174 (311)
++...++.+...+..++.-=+..-++=|++.|---+
T Consensus 35 ~~~~~i~~~l~~l~~~l~~~l~~~~~~r~~~~p~~~ 70 (314)
T 3m73_A 35 PAARMVSDVLGIVASAVWILFILMYAYKLRYYFEEV 70 (314)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444444443333333333333444566777775443
No 6
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=12.15 E-value=3.4e+02 Score=24.40 Aligned_cols=31 Identities=13% Similarity=0.166 Sum_probs=19.2
Q ss_pred hhhhhHHHHHHHhhhh-eeecc-CCCccHHHHH
Q 021506 114 SFGITSMAVMAVYYRF-WWQME-GGEVPLAEMF 144 (311)
Q Consensus 114 s~g~~~~a~~a~y~rf-~~~~~-~g~~p~~eMl 144 (311)
++|||.+-.+.|+.-- ...|. -+.+|..+..
T Consensus 247 ~lgit~lLt~tv~~~~~~~~lP~~S~v~~id~~ 279 (347)
T 3rhw_A 247 TLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVW 279 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCSSCCHHHHH
T ss_pred EEEeehHHHHHHHHHHHHhhCCCccceeHHHHH
Confidence 3677776666665433 34454 3679988874
No 7
>2kdr_X NS4B, P27, non-structural protein 4B; HCV, 227-254 segment, membranous WEB, replication complex, membrane, transmembrane, RNA-binding; NMR {Hepatitis c virus}
Probab=12.08 E-value=1.2e+02 Score=19.79 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=12.0
Q ss_pred HHHHHHhhhhhHHH
Q 021506 108 VAAVMSSFGITSMA 121 (311)
Q Consensus 108 ~aa~~ss~g~~~~a 121 (311)
|.|++||+-|||+.
T Consensus 7 VtaiLssLTvTsLl 20 (28)
T 2kdr_X 7 VTAILSSLTVTQLL 20 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67899999999874
No 8
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=12.06 E-value=4.5e+02 Score=23.25 Aligned_cols=46 Identities=2% Similarity=-0.104 Sum_probs=24.5
Q ss_pred hhhhhHHHHHHHhhh-heeecc-CCCccHHHHHHHHHHHHHHHHHHHH
Q 021506 114 SFGITSMAVMAVYYR-FWWQME-GGEVPLAEMFGTFALSVGAAVGMEF 159 (311)
Q Consensus 114 s~g~~~~a~~a~y~r-f~~~~~-~g~~p~~eMl~~~al~lga~v~MEf 159 (311)
++|||.+-.+.++.- ....|. -+.+|..+....+.+++..+..+|.
T Consensus 230 ~l~it~lL~~t~~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~~ 277 (321)
T 3tlw_A 230 TLVVSTLIAHIAFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVIEV 277 (321)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEhhHHHHHHHHHHHHHhhCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 356666655555543 345564 3678988874433333333333443
No 9
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=11.33 E-value=4.6e+02 Score=27.64 Aligned_cols=61 Identities=11% Similarity=-0.079 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHhhhheee-ccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021506 104 FTYLVAAVMSSFGITSMAVMAVYYRFWWQ-MEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKA 167 (311)
Q Consensus 104 ~ty~~aa~~ss~g~~~~a~~a~y~rf~~~-~~~g~~p~~eMl~~~al~lga~v~MEfvA~~aHKy 167 (311)
--|++.|+..++.+..+ .+|.=+.-. +.-..+++.+.+..+++.+..++..|..-|+..||
T Consensus 962 N~~l~~~~~~~~~l~~~---~~~~p~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~~r~~ 1023 (1034)
T 3ixz_A 962 NRILVIAIVFQVCIGCF---LCYCPGMPNIFNFMPIRFQWWLVPMPFGLLIFVYDEIRKLGVRCC 1023 (1034)
T ss_pred cHHHHHHHHHHHHHHHH---HHHhhhHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35777777777665543 344432211 12245777777777777777788888887766543
No 10
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=9.55 E-value=2.9e+02 Score=26.45 Aligned_cols=42 Identities=10% Similarity=0.153 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHhhhhhH----------------HHHHHHhhhheeeccC--CCccHHHH
Q 021506 102 ERFTYLVAAVMSSFGITS----------------MAVMAVYYRFWWQMEG--GEVPLAEM 143 (311)
Q Consensus 102 e~~ty~~aa~~ss~g~~~----------------~a~~a~y~rf~~~~~~--g~~p~~eM 143 (311)
=|++|..+++.+-++... .--++-|.+=....+| |..|..|-
T Consensus 159 ~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~Es 218 (390)
T 3dra_B 159 LRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDES 218 (390)
T ss_dssp HHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCC
T ss_pred HHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCccc
Confidence 378999999999999887 2344455554444566 67898886
Done!