Query 021506
Match_columns 311
No_of_seqs 142 out of 214
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 05:08:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021506.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021506hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bnma1 a.35.1.3 (A:6-76) Hydr 38.6 9.9 0.00072 27.1 2.8 57 90-154 4-61 (71)
2 d1wpga4 f.33.1.1 (A:1-124,A:24 22.3 46 0.0034 29.3 5.0 60 105-167 409-469 (472)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 19.3 2E+02 0.014 22.4 8.0 31 136-166 280-311 (447)
4 d1vlaa_ d.227.1.2 (A:) Hypothe 14.0 54 0.0039 23.8 2.8 20 105-124 46-65 (144)
5 d1uspa_ d.227.1.1 (A:) Organic 12.8 62 0.0045 23.2 2.8 20 105-124 46-65 (137)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 11.7 2.4E+02 0.017 19.7 7.3 74 130-210 9-88 (100)
7 d2onfa1 d.227.1.1 (A:1-139) Hy 11.7 69 0.005 23.1 2.8 20 105-124 44-63 (139)
8 d1pv7a_ f.38.1.2 (A:) Lactose 11.0 2.9E+02 0.021 20.4 10.5 20 148-167 267-286 (417)
9 d1oedc_ f.36.1.1 (C:) Acetylch 10.5 85 0.0062 24.4 3.2 30 115-144 35-67 (260)
10 d1xeqa1 a.16.1.1 (A:15-103) N- 9.4 38 0.0028 24.8 0.5 13 121-133 12-24 (89)
No 1
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=38.61 E-value=9.9 Score=27.10 Aligned_cols=57 Identities=37% Similarity=0.550 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhhhhHHHHHHHhhhheeec-cCCCccHHHHHHHHHHHHHHH
Q 021506 90 ARVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQM-EGGEVPLAEMFGTFALSVGAA 154 (311)
Q Consensus 90 ~~~~~~~~~~~~e~~ty~~aa~~ss~g~~~~a~~a~y~rf~~~~-~~g~~p~~eMl~~~al~lga~ 154 (311)
.-.||++..++ |+...--||++|-+|-|--.+.| |.- ||||..++.+ +-++=++|+-
T Consensus 4 tgfae~lk~rr-eqvkmdhaalas~lgetpetvaa------wengeggeltltql-g~ia~~lgts 61 (71)
T d2bnma1 4 TGFAELLKDRR-EQVKMDHAALASLLGETPETVAA------WENGEGGELTLTQL-GRIAHVLGTS 61 (71)
T ss_dssp HHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHH------HHTTTCTTCBHHHH-HHHHHHTTSC
T ss_pred hhHHHHHHHHH-HHHhhhHHHHHHHHcCCchHHHH------hhcCCCceeeHHHH-HHHHHHHccc
Confidence 45677775544 66666779999999999887775 765 7899998875 4445555543
No 2
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=22.25 E-value=46 Score=29.26 Aligned_cols=60 Identities=13% Similarity=0.094 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhhhheee-ccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021506 105 TYLVAAVMSSFGITSMAVMAVYYRFWWQ-MEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKA 167 (311)
Q Consensus 105 ty~~aa~~ss~g~~~~a~~a~y~rf~~~-~~~g~~p~~eMl~~~al~lga~v~MEfvA~~aHKy 167 (311)
.|++.|+..++ .+.+..+|.-+.=. +.--.+|+.+.+..+++.+..++..|.+-|+.-||
T Consensus 409 ~~l~~av~i~~---~l~~~i~yiP~l~~vf~~~pL~~~~w~i~l~~~~~~~~~~El~K~~~R~~ 469 (472)
T d1wpga4 409 IWLLGSICLSM---SLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEILKFIARNY 469 (472)
T ss_dssp HHHHHHHHHHH---HHHHHHHHSTTTHHHHTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH---HHHHHHHHhhHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45655555443 45566678765321 22356888888888888888999999998877665
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=19.29 E-value=2e+02 Score=22.42 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=15.4
Q ss_pred CCccHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 021506 136 GEVPLAEM-FGTFALSVGAAVGMEFWARWAHK 166 (311)
Q Consensus 136 g~~p~~eM-l~~~al~lga~v~MEfvA~~aHK 166 (311)
...+..+. ....+..++.+++.-+..|+.-|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 311 (447)
T d1pw4a_ 280 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK 311 (447)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhcchhhhhhhhhhhhhhhhh
Confidence 34444444 33334445556666666655554
No 4
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=13.99 E-value=54 Score=23.81 Aligned_cols=20 Identities=10% Similarity=0.419 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhhhhHHHHHH
Q 021506 105 TYLVAAVMSSFGITSMAVMA 124 (311)
Q Consensus 105 ty~~aa~~ss~g~~~~a~~a 124 (311)
-|+.||++|+++++..+++.
T Consensus 46 elllaala~C~~~~~~~~a~ 65 (144)
T d1vlaa_ 46 ELVLTGLMGCTGMDVVSILR 65 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 58999999999988777765
No 5
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=12.81 E-value=62 Score=23.18 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=15.6
Q ss_pred HHHHHHHHHhhhhhHHHHHH
Q 021506 105 TYLVAAVMSSFGITSMAVMA 124 (311)
Q Consensus 105 ty~~aa~~ss~g~~~~a~~a 124 (311)
.|+.||++|+++++...++.
T Consensus 46 elllaAlasC~~~t~~~~a~ 65 (137)
T d1uspa_ 46 QLFAAGYAACFQGALGVVSR 65 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58999999999877665543
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.74 E-value=2.4e+02 Score=19.69 Aligned_cols=74 Identities=22% Similarity=0.328 Sum_probs=38.1
Q ss_pred eeecc--CCCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCcccccee-hhhhHHHHH
Q 021506 130 WWQME--GGEVPLAEM---FGTFALSVGAAVGMEFWARWAHKALWHASLWHMHESHHRPREGPFELNDVF-AIINAVPAI 203 (311)
Q Consensus 130 ~~~~~--~g~~p~~eM---l~~~al~lga~v~MEfvA~~aHKyImHG~LW~~H~sHH~p~~G~fE~NDlF-AiifAvPAI 203 (311)
.|||- .+.-|..|. +-...+.+.+++.. ++.|. +--+.|+-+++-+. ....+.-|... .+...+|++
T Consensus 9 ~~ql~fqd~as~~a~~i~~l~~~v~~i~~~I~~-~V~~~-----l~~~~~~~r~~~~~-~~~~~~~n~~LEiiWTviP~l 81 (100)
T d3dtub2 9 PGGTGFQPSASPVATQIHWLDGFILVIIAAITI-FVTLL-----ILYAVWRFHEKRNK-VPARFTHNSPLEIAWTIVPIV 81 (100)
T ss_dssp TTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHHBTTTCC-SCCCCCCCHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHH-----HHHHhhhhhccCCC-CCccccCcchHHHHHHHHHHH
Confidence 47763 556666655 22223333322222 33333 23334544443322 11234456656 788999999
Q ss_pred HHHHhhc
Q 021506 204 ALLSFGF 210 (311)
Q Consensus 204 aLi~~G~ 210 (311)
.|+.+++
T Consensus 82 ILi~l~~ 88 (100)
T d3dtub2 82 ILVAIGA 88 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998884
No 7
>d2onfa1 d.227.1.1 (A:1-139) Hypothetical protein Ta0195 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=11.74 E-value=69 Score=23.09 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhhhHHHHHH
Q 021506 105 TYLVAAVMSSFGITSMAVMA 124 (311)
Q Consensus 105 ty~~aa~~ss~g~~~~a~~a 124 (311)
-|+.||++|+++++...++.
T Consensus 44 elllaala~C~~~~~~~~a~ 63 (139)
T d2onfa1 44 TLFPSVLASCLLTTFLEFKD 63 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58999999999988776654
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=11.03 E-value=2.9e+02 Score=20.37 Aligned_cols=20 Identities=15% Similarity=-0.139 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021506 148 ALSVGAAVGMEFWARWAHKA 167 (311)
Q Consensus 148 al~lga~v~MEfvA~~aHKy 167 (311)
...++..++.-...++..|.
T Consensus 267 ~~~~~~~~~~~~~~~l~~r~ 286 (417)
T d1pv7a_ 267 MGELLNASIMFFAPLIINRI 286 (417)
T ss_dssp HHHHHHHHHHTTHHHHHHHH
T ss_pred ccccccccchhhhhhhhccc
Confidence 33444556666666666553
No 9
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=10.52 E-value=85 Score=24.43 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHhhhheee-cc--CCCccHHHHH
Q 021506 115 FGITSMAVMAVYYRFWWQ-ME--GGEVPLAEMF 144 (311)
Q Consensus 115 ~g~~~~a~~a~y~rf~~~-~~--~g~~p~~eMl 144 (311)
+|||.+-.+.|+.=..-+ |. +..+|+...+
T Consensus 35 l~it~lLs~~vf~~~v~~~lP~tS~~vPli~~y 67 (260)
T d1oedc_ 35 TAISVLLAQAVFLLLTSQRLPETALAVPLIGKY 67 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHH
T ss_pred eeHHHHHHHHHHHHHHHHhCCCCCCCcchHHHH
Confidence 455555555555544433 33 3468887773
No 10
>d1xeqa1 a.16.1.1 (A:15-103) N-terminal, RNA-binding domain of nonstructural protein NS1 {Influenza B virus [TaxId: 11520]}
Probab=9.42 E-value=38 Score=24.80 Aligned_cols=13 Identities=38% Similarity=0.899 Sum_probs=10.4
Q ss_pred HHHHHhhhheeec
Q 021506 121 AVMAVYYRFWWQM 133 (311)
Q Consensus 121 a~~a~y~rf~~~~ 133 (311)
.++-+|-||+||-
T Consensus 12 gil~cy~r~swq~ 24 (89)
T d1xeqa1 12 GILECYERFSWQR 24 (89)
T ss_dssp HHHHHHHHHHHTT
T ss_pred hHHHHHHHhhhcc
Confidence 4567899999985
Done!