BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021510
         (311 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
 pdb|1WWL|B Chain B, Crystal Structure Of Cd14
          Length = 312

 Score = 30.0 bits (66), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 16/82 (19%)

Query: 240 VFPQLTTLKLQDLPKL--RCLYPGMHSSEWPALEILLVYGCD--------------KLKI 283
           VFP L+TL L D P+L  R L   +   ++P L++L +                  ++++
Sbjct: 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230

Query: 284 FAADLSQNNENDQLGIPAQQLP 305
              DLS N+  D  G P+   P
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWP 252


>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
           Tlr5 In Complex With Salmonella Flagellin
 pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
           Tlr5 In Complex With Salmonella Flagellin
          Length = 455

 Score = 27.7 bits (60), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 12/114 (10%)

Query: 141 LDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRL--IVWHCHKLK 198
           L + T  FN    L NLEVL +++ N+D       L   F  F+ LT L  +V   + +K
Sbjct: 92  LQLETGAFN---GLANLEVLTLTQCNLDGAV----LSGNF--FKPLTSLEMLVLRDNNIK 142

Query: 199 YIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDL 252
            I  AS   ++++   L++ +   ++ I  E+  +    +F   +L+++ LQD+
Sbjct: 143 KIQPASFFLNMRRFHVLDL-TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195


>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
           Tlr5
          Length = 407

 Score = 27.7 bits (60), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 12/114 (10%)

Query: 141 LDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRL--IVWHCHKLK 198
           L + T  FN    L NLEVL +++ N+D      +       F+ LT L  +V   + +K
Sbjct: 92  LQLETGAFN---GLANLEVLTLTQCNLDGAVLSGNF------FKPLTSLEMLVLRDNNIK 142

Query: 199 YIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDL 252
            I  AS   ++++   L++ +   ++ I  E+  +    +F   +L+++ LQD+
Sbjct: 143 KIQPASFFLNMRRFHVLDL-TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,525,502
Number of Sequences: 62578
Number of extensions: 314713
Number of successful extensions: 632
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 8
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)