Query 021510
Match_columns 311
No_of_seqs 145 out of 1630
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 03:33:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.7 1.8E-17 4E-22 168.3 15.1 253 6-285 632-910 (1153)
2 PLN03210 Resistant to P. syrin 99.7 1.7E-16 3.8E-21 161.2 14.8 91 7-113 610-700 (1153)
3 PLN00113 leucine-rich repeat r 99.6 2.5E-14 5.4E-19 144.3 12.2 84 6-105 116-199 (968)
4 PLN00113 leucine-rich repeat r 99.5 1.1E-13 2.3E-18 139.8 11.0 89 3-105 135-223 (968)
5 KOG4194 Membrane glycoprotein 99.1 1.8E-11 3.8E-16 110.8 2.6 113 155-281 317-429 (873)
6 KOG4658 Apoptotic ATPase [Sign 99.1 7.2E-11 1.6E-15 115.7 4.3 250 5-287 568-848 (889)
7 KOG4194 Membrane glycoprotein 99.0 1.3E-09 2.8E-14 98.9 6.7 138 155-303 173-328 (873)
8 KOG0444 Cytoskeletal regulator 98.9 4.2E-11 9.1E-16 109.3 -3.9 222 5-275 75-298 (1255)
9 KOG0444 Cytoskeletal regulator 98.9 7.9E-11 1.7E-15 107.6 -4.8 259 5-311 52-315 (1255)
10 KOG4341 F-box protein containi 98.8 4.6E-11 9.9E-16 104.1 -6.6 94 8-109 138-231 (483)
11 PRK15370 E3 ubiquitin-protein 98.8 6.4E-09 1.4E-13 100.7 7.0 38 242-285 367-404 (754)
12 PRK15387 E3 ubiquitin-protein 98.8 2.1E-08 4.6E-13 96.8 9.7 89 8-111 222-318 (788)
13 PRK15387 E3 ubiquitin-protein 98.8 4.4E-08 9.5E-13 94.7 11.2 76 10-111 203-278 (788)
14 KOG4341 F-box protein containi 98.7 1.5E-10 3.3E-15 100.9 -7.5 71 35-112 138-208 (483)
15 PRK15370 E3 ubiquitin-protein 98.7 7.1E-08 1.5E-12 93.6 9.5 210 8-289 178-387 (754)
16 KOG0618 Serine/threonine phosp 98.7 7.5E-09 1.6E-13 98.5 2.8 219 35-282 241-490 (1081)
17 KOG0472 Leucine-rich repeat pr 98.7 4.8E-11 1E-15 103.6 -11.9 60 5-71 65-124 (565)
18 cd00116 LRR_RI Leucine-rich re 98.5 1.3E-08 2.8E-13 89.8 -1.4 66 7-73 22-93 (319)
19 KOG4658 Apoptotic ATPase [Sign 98.5 1.3E-07 2.9E-12 93.1 4.6 89 8-110 545-634 (889)
20 KOG0617 Ras suppressor protein 98.5 4E-09 8.6E-14 81.8 -4.7 154 8-226 33-188 (264)
21 cd00116 LRR_RI Leucine-rich re 98.5 4E-08 8.8E-13 86.6 0.6 227 6-279 49-289 (319)
22 KOG0472 Leucine-rich repeat pr 98.4 2.6E-09 5.5E-14 93.0 -6.9 213 9-279 92-308 (565)
23 KOG3207 Beta-tubulin folding c 98.4 1.8E-08 3.9E-13 88.6 -1.8 89 154-251 221-310 (505)
24 KOG0617 Ras suppressor protein 98.4 6.4E-09 1.4E-13 80.6 -6.1 162 32-261 30-191 (264)
25 PRK15386 type III secretion pr 98.3 6.2E-06 1.3E-10 73.9 9.7 61 33-110 50-110 (426)
26 PF14580 LRR_9: Leucine-rich r 98.2 2.2E-06 4.8E-11 68.3 5.1 111 154-280 41-152 (175)
27 KOG2120 SCF ubiquitin ligase, 98.2 4E-08 8.6E-13 82.7 -5.7 187 36-279 186-374 (419)
28 KOG3207 Beta-tubulin folding c 98.2 1.8E-07 3.9E-12 82.5 -2.0 63 154-221 245-312 (505)
29 KOG4237 Extracellular matrix p 98.1 3.4E-07 7.3E-12 79.9 -0.8 86 151-251 270-355 (498)
30 PF13855 LRR_8: Leucine rich r 98.1 6.8E-06 1.5E-10 53.6 4.3 60 155-221 1-60 (61)
31 PF14580 LRR_9: Leucine-rich r 98.0 3E-06 6.5E-11 67.6 2.5 106 154-279 18-124 (175)
32 PRK15386 type III secretion pr 98.0 1.2E-05 2.5E-10 72.1 6.2 61 153-226 50-110 (426)
33 KOG0618 Serine/threonine phosp 97.9 4E-07 8.8E-12 87.1 -4.4 85 152-254 404-488 (1081)
34 KOG4237 Extracellular matrix p 97.9 6.5E-07 1.4E-11 78.1 -3.3 64 11-79 70-133 (498)
35 KOG2120 SCF ubiquitin ligase, 97.8 4.5E-07 9.8E-12 76.4 -5.6 187 9-252 186-373 (419)
36 PF13855 LRR_8: Leucine rich r 97.7 7.1E-05 1.5E-09 48.7 4.5 58 185-252 2-59 (61)
37 KOG1947 Leucine rich repeat pr 97.6 1.8E-06 3.8E-11 80.5 -6.6 38 33-70 186-223 (482)
38 KOG1947 Leucine rich repeat pr 97.5 3.3E-06 7.1E-11 78.7 -5.2 96 7-110 187-285 (482)
39 KOG1259 Nischarin, modulator o 97.4 4.7E-05 1E-09 64.6 1.2 107 154-281 306-412 (490)
40 KOG3665 ZYG-1-like serine/thre 97.4 3.7E-05 7.9E-10 74.3 -0.5 14 91-104 170-183 (699)
41 COG4886 Leucine-rich repeat (L 97.3 0.00022 4.9E-09 64.9 4.2 65 32-110 113-178 (394)
42 KOG3665 ZYG-1-like serine/thre 97.2 8.4E-05 1.8E-09 71.9 0.3 87 153-251 171-259 (699)
43 COG4886 Leucine-rich repeat (L 97.2 0.00026 5.6E-09 64.5 3.4 88 7-112 115-203 (394)
44 KOG1259 Nischarin, modulator o 97.2 3.8E-05 8.3E-10 65.1 -2.4 16 4-19 210-225 (490)
45 KOG0532 Leucine-rich repeat (L 96.8 3.2E-05 7E-10 70.8 -6.4 34 154-193 165-198 (722)
46 PLN03150 hypothetical protein; 96.5 0.0042 9E-08 60.1 5.8 113 157-285 420-532 (623)
47 PLN03150 hypothetical protein; 96.4 0.0046 9.9E-08 59.8 5.3 63 152-221 439-501 (623)
48 PF12799 LRR_4: Leucine Rich r 96.4 0.0046 1E-07 37.1 3.4 34 8-45 1-34 (44)
49 KOG2982 Uncharacterized conser 96.4 0.0019 4E-08 55.1 2.0 69 153-226 197-265 (418)
50 KOG2982 Uncharacterized conser 96.3 0.00087 1.9E-08 57.1 -0.4 68 153-226 144-214 (418)
51 PF12799 LRR_4: Leucine Rich r 96.2 0.0096 2.1E-07 35.7 3.8 39 35-77 1-39 (44)
52 KOG3864 Uncharacterized conser 96.0 0.0013 2.7E-08 52.9 -1.0 77 27-111 117-193 (221)
53 KOG0532 Leucine-rich repeat (L 95.9 0.00037 8E-09 64.1 -4.6 63 28-104 114-176 (722)
54 KOG3864 Uncharacterized conser 95.8 0.00087 1.9E-08 53.8 -2.4 64 7-72 124-187 (221)
55 KOG2123 Uncharacterized conser 95.4 0.00054 1.2E-08 57.7 -5.3 84 154-248 40-123 (388)
56 KOG2739 Leucine-rich acidic nu 95.3 0.0079 1.7E-07 50.3 1.2 117 154-286 42-161 (260)
57 KOG1859 Leucine-rich repeat pr 95.0 0.00067 1.4E-08 64.3 -6.4 111 54-221 180-290 (1096)
58 KOG0531 Protein phosphatase 1, 94.8 0.0063 1.4E-07 55.9 -0.6 12 59-70 116-127 (414)
59 KOG2123 Uncharacterized conser 93.9 0.0012 2.6E-08 55.7 -6.6 85 7-108 18-102 (388)
60 KOG1644 U2-associated snRNP A' 93.9 0.13 2.8E-06 41.7 5.0 17 154-170 63-79 (233)
61 KOG1909 Ran GTPase-activating 93.8 0.008 1.7E-07 52.3 -2.0 119 153-280 183-310 (382)
62 KOG1909 Ran GTPase-activating 93.4 0.0052 1.1E-07 53.4 -3.8 233 7-253 57-309 (382)
63 KOG1859 Leucine-rich repeat pr 93.3 0.0025 5.5E-08 60.5 -6.3 85 152-253 206-290 (1096)
64 PF13504 LRR_7: Leucine rich r 92.5 0.092 2E-06 24.4 1.4 11 269-279 2-12 (17)
65 KOG1644 U2-associated snRNP A' 92.1 0.25 5.5E-06 40.1 4.3 109 155-279 42-151 (233)
66 KOG2739 Leucine-rich acidic nu 92.1 0.09 2E-06 44.1 1.9 63 33-105 63-127 (260)
67 PF00560 LRR_1: Leucine Rich R 92.0 0.15 3.2E-06 25.4 1.9 15 156-170 1-15 (22)
68 KOG0531 Protein phosphatase 1, 90.7 0.14 3.1E-06 47.0 1.9 81 4-104 91-172 (414)
69 smart00367 LRR_CC Leucine-rich 88.3 0.27 5.8E-06 25.5 1.1 16 267-282 1-16 (26)
70 PF13306 LRR_5: Leucine rich r 87.2 2.3 5E-05 31.5 6.1 108 154-285 11-118 (129)
71 KOG4579 Leucine-rich repeat (L 84.3 0.092 2E-06 40.0 -2.8 84 155-252 27-110 (177)
72 PF13306 LRR_5: Leucine rich r 80.9 8 0.00017 28.5 6.7 105 179-300 7-111 (129)
73 COG5238 RNA1 Ran GTPase-activa 79.6 0.47 1E-05 40.4 -0.6 66 155-221 185-253 (388)
74 smart00369 LRR_TYP Leucine-ric 62.8 5.2 0.00011 20.4 1.3 19 268-287 2-20 (26)
75 smart00370 LRR Leucine-rich re 62.8 5.2 0.00011 20.4 1.3 19 268-287 2-20 (26)
76 KOG4579 Leucine-rich repeat (L 57.1 2.3 5E-05 32.6 -1.0 59 154-221 52-111 (177)
77 smart00365 LRR_SD22 Leucine-ri 56.2 8.5 0.00018 20.0 1.4 16 155-170 2-17 (26)
78 PF13516 LRR_6: Leucine Rich r 49.2 12 0.00026 18.6 1.2 12 210-221 2-13 (24)
79 KOG3763 mRNA export factor TAP 39.6 7.4 0.00016 36.6 -0.8 94 4-100 214-307 (585)
80 smart00364 LRR_BAC Leucine-ric 30.7 23 0.0005 18.4 0.5 16 155-170 2-17 (26)
81 smart00368 LRR_RI Leucine rich 21.7 50 0.0011 17.2 0.8 11 155-165 2-12 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=1.8e-17 Score=168.25 Aligned_cols=253 Identities=18% Similarity=0.264 Sum_probs=140.4
Q ss_pred cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510 6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD 85 (311)
Q Consensus 6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 85 (311)
.+++|+.|+|+++.+++.+ +.++.+++|++|++++|..+..+ |..++.+++|++|++++|..++.++.
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~i----p~ls~l~~Le~L~L~~c~~L~~l--p~si~~L~~L~~L~L~~c~~L~~Lp~------ 699 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEI----PDLSMATNLETLKLSDCSSLVEL--PSSIQYLNKLEDLDMSRCENLEILPT------ 699 (1153)
T ss_pred cCCCCCEEECCCCCCcCcC----CccccCCcccEEEecCCCCcccc--chhhhccCCCCEEeCCCCCCcCccCC------
Confidence 3455555555555444442 23455566666666666666554 44556666666666666666665552
Q ss_pred cccceeeecccceEecCCCCCccccccCCCCCC----------CCC-Cccccccccccccccccccccc-cccccc-ccc
Q 021510 86 NAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPS----------ASP-NRQVSQEESTAMYCSSEITLDI-STLLFN-EKV 152 (311)
Q Consensus 86 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~----------~~~-~~~~~~~~~l~l~~~~~~~~~~-~~~~~~-~~~ 152 (311)
. ..+++|+.|.+++|..+..++....... ..+ ......+..+.+.......... ..+... ...
T Consensus 700 ---~-i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~ 775 (1153)
T PLN03210 700 ---G-INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTM 775 (1153)
T ss_pred ---c-CCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhh
Confidence 1 1456667777776665554432110000 000 0000000000000000000000 000000 011
Q ss_pred cCCCccEEEeeee-eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccc
Q 021510 153 ALPNLEVLEISEI-NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENR 231 (311)
Q Consensus 153 ~l~~L~~L~l~~~-~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 231 (311)
..++|++|++++| .+..+ |..++++++|+.|++.+|..++.+ |.. .++++|++|++++|.++..++....
T Consensus 776 ~~~sL~~L~Ls~n~~l~~l------P~si~~L~~L~~L~Ls~C~~L~~L-P~~--~~L~sL~~L~Ls~c~~L~~~p~~~~ 846 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVEL------PSSIQNLHKLEHLEIENCINLETL-PTG--INLESLESLDLSGCSRLRTFPDIST 846 (1153)
T ss_pred ccccchheeCCCCCCcccc------ChhhhCCCCCCEEECCCCCCcCee-CCC--CCccccCEEECCCCCcccccccccc
Confidence 2357777777777 44444 666778888888888888888876 543 2678888888888876654422100
Q ss_pred ----------ccC--cCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccc
Q 021510 232 ----------TDQ--VIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFA 285 (311)
Q Consensus 232 ----------~~~--~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp 285 (311)
... ......+++|+.|++.+|++|+.++... ..+++|+.+++.+|++++.++
T Consensus 847 nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~--~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI--SKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccc--ccccCCCeeecCCCccccccc
Confidence 000 0112348899999999999999988765 578999999999999987554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.70 E-value=1.7e-16 Score=161.20 Aligned_cols=91 Identities=21% Similarity=0.277 Sum_probs=73.2
Q ss_pred CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccc
Q 021510 7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDN 86 (311)
Q Consensus 7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 86 (311)
+.+|++|++.++ .++.++ ...+.+++|++|+++++..+..+ +.+..+++|++|++.+|..+..++.
T Consensus 610 ~~~L~~L~L~~s-~l~~L~---~~~~~l~~Lk~L~Ls~~~~l~~i---p~ls~l~~Le~L~L~~c~~L~~lp~------- 675 (1153)
T PLN03210 610 PENLVKLQMQGS-KLEKLW---DGVHSLTGLRNIDLRGSKNLKEI---PDLSMATNLETLKLSDCSSLVELPS------- 675 (1153)
T ss_pred ccCCcEEECcCc-cccccc---cccccCCCCCEEECCCCCCcCcC---CccccCCcccEEEecCCCCccccch-------
Confidence 467888888875 466653 34478999999999998888776 3467789999999999998888763
Q ss_pred ccceeeecccceEecCCCCCccccccC
Q 021510 87 AIEKIEFAQLRSLSLGNLPEVTSFCCE 113 (311)
Q Consensus 87 ~~~~~~l~~L~~L~l~~~~~l~~l~~~ 113 (311)
.+..+++|+.|++.+|.+++.++..
T Consensus 676 --si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 676 --SIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred --hhhccCCCCEEeCCCCCCcCccCCc
Confidence 4567899999999999999888764
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.55 E-value=2.5e-14 Score=144.33 Aligned_cols=84 Identities=15% Similarity=0.094 Sum_probs=51.4
Q ss_pred cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510 6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD 85 (311)
Q Consensus 6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 85 (311)
.+++|++|+++++. +.+ ..+.+.+++|++|+++++.....+ +..++.+++|++|++++|.....++.
T Consensus 116 ~l~~L~~L~Ls~n~-l~~----~~p~~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~------ 182 (968)
T PLN00113 116 TSSSLRYLNLSNNN-FTG----SIPRGSIPNLETLDLSNNMLSGEI--PNDIGSFSSLKVLDLGGNVLVGKIPN------ 182 (968)
T ss_pred cCCCCCEEECcCCc-ccc----ccCccccCCCCEEECcCCcccccC--ChHHhcCCCCCEEECccCcccccCCh------
Confidence 45788888888754 433 223356778888888776432222 45567777888888877654333331
Q ss_pred cccceeeecccceEecCCCC
Q 021510 86 NAIEKIEFAQLRSLSLGNLP 105 (311)
Q Consensus 86 ~~~~~~~l~~L~~L~l~~~~ 105 (311)
.+..+++|++|+++++.
T Consensus 183 ---~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 183 ---SLTNLTSLEFLTLASNQ 199 (968)
T ss_pred ---hhhhCcCCCeeeccCCC
Confidence 33456667777776653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.49 E-value=1.1e-13 Score=139.82 Aligned_cols=89 Identities=20% Similarity=0.182 Sum_probs=62.6
Q ss_pred CCccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccc
Q 021510 3 GCDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGE 82 (311)
Q Consensus 3 ~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 82 (311)
+...+++|++|+++++.-...+ +..++.+++|++|++++|.....+ +..+.++++|++|++++|.....++.
T Consensus 135 p~~~l~~L~~L~Ls~n~~~~~~---p~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~--- 206 (968)
T PLN00113 135 PRGSIPNLETLDLSNNMLSGEI---PNDIGSFSSLKVLDLGGNVLVGKI--PNSLTNLTSLEFLTLASNQLVGQIPR--- 206 (968)
T ss_pred CccccCCCCEEECcCCcccccC---ChHHhcCCCCCEEECccCcccccC--ChhhhhCcCCCeeeccCCCCcCcCCh---
Confidence 3456899999999997522222 345688999999999987544443 45678899999999998765444432
Q ss_pred ccccccceeeecccceEecCCCC
Q 021510 83 EVDNAIEKIEFAQLRSLSLGNLP 105 (311)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~l~~~~ 105 (311)
.+..+++|++|++.++.
T Consensus 207 ------~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 207 ------ELGQMKSLKWIYLGYNN 223 (968)
T ss_pred ------HHcCcCCccEEECcCCc
Confidence 34566777777777663
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.14 E-value=1.8e-11 Score=110.78 Aligned_cols=113 Identities=21% Similarity=0.288 Sum_probs=67.4
Q ss_pred CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510 155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ 234 (311)
Q Consensus 155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 234 (311)
++|++|++++|+++.+ .+.++..+++|+.|.++. +++..+ ....+..+.+|++|++.++. +...+. | .
T Consensus 317 qkL~~LdLs~N~i~~l-----~~~sf~~L~~Le~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~N~-ls~~IE-D---a 384 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRL-----DEGSFRVLSQLEELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRSNE-LSWCIE-D---A 384 (873)
T ss_pred ccceeEeccccccccC-----ChhHHHHHHHhhhhcccc-cchHHH-HhhHHHHhhhhhhhcCcCCe-EEEEEe-c---c
Confidence 4555555555554444 122344555666666655 345544 33335566777777777765 554442 2 1
Q ss_pred cCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCc
Q 021510 235 VIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKL 281 (311)
Q Consensus 235 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l 281 (311)
..++.-+++|++|.+.+ .+++.++...+ ..++.||+|++.+.+-.
T Consensus 385 a~~f~gl~~LrkL~l~g-Nqlk~I~krAf-sgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTG-NQLKSIPKRAF-SGLEALEHLDLGDNAIA 429 (873)
T ss_pred hhhhccchhhhheeecC-ceeeecchhhh-ccCcccceecCCCCcce
Confidence 23344488899999887 68888876442 46888888888776543
No 6
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.08 E-value=7.2e-11 Score=115.74 Aligned_cols=250 Identities=22% Similarity=0.273 Sum_probs=155.4
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
..+|.|+.|+++++..+.++ +..++.+-+||+|+++++ .++.+ |..+++++.|.+|++..+..+..++.
T Consensus 568 ~~m~~LrVLDLs~~~~l~~L---P~~I~~Li~LryL~L~~t-~I~~L--P~~l~~Lk~L~~Lnl~~~~~l~~~~~----- 636 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKL---PSSIGELVHLRYLDLSDT-GISHL--PSGLGNLKKLIYLNLEVTGRLESIPG----- 636 (889)
T ss_pred hhCcceEEEECCCCCccCcC---ChHHhhhhhhhcccccCC-Ccccc--chHHHHHHhhheeccccccccccccc-----
Confidence 45789999999988888777 555688999999999884 67766 77888899999999888766655431
Q ss_pred ccccceeeecccceEecCCCC-CccccccCCCCCCCCCCccccccccccccc-----------------ccccc------
Q 021510 85 DNAIEKIEFAQLRSLSLGNLP-EVTSFCCEVETPSASPNRQVSQEESTAMYC-----------------SSEIT------ 140 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~-----------------~~~~~------ 140 (311)
....+++|++|.+..-. ..+..-. .+...++++.... +....
T Consensus 637 ----i~~~L~~Lr~L~l~~s~~~~~~~~l----------~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 637 ----ILLELQSLRVLRLPRSALSNDKLLL----------KELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred ----hhhhcccccEEEeeccccccchhhH----------HhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhc
Confidence 22347888888765421 0000000 0000111111100 00000
Q ss_pred cccccccccccccCCCccEEEeeeeeceee---eccCCCCCCCC-CCCcccEEEEecCCCCccccchHHHhccCCCcEEE
Q 021510 141 LDISTLLFNEKVALPNLEVLEISEINVDQI---WHYNHLPVTFP-RFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLE 216 (311)
Q Consensus 141 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i---~~~~~~p~~~~-~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~ 216 (311)
...-.........+.+|+.|.|.+|.+..+ |.... ... .|+++..+.+.+|+......+ ..-.++|+.|+
T Consensus 703 ~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~---~~~~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~ 776 (889)
T KOG4658|consen 703 GCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESL---IVLLCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLS 776 (889)
T ss_pred ccccceeecccccccCcceEEEEcCCCchhhccccccc---chhhhHHHHHHHHhhccccccccch---hhccCcccEEE
Confidence 001112233456789999999999955432 22111 112 266788888888888887633 34578999999
Q ss_pred EccccccceecccccccCcC--CcccCCccCeE-ecccCcccccccCCCcccCCCcccEEEEecCCCccccccc
Q 021510 217 ICSCEDLQEIISENRTDQVI--PYFVFPQLTTL-KLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAAD 287 (311)
Q Consensus 217 l~~c~~l~~~~~~~~~~~~~--~~~~~~~L~~L-~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~ 287 (311)
+..|..+++++......... ....+.++..+ .+.+.+.++.+.... ..++.|+.+.+..||++..+|..
T Consensus 777 l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 777 LVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred EecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecc--cCccchhheehhcCcccccCccc
Confidence 99999888876543322211 12336666666 466667777665544 45666999999999999999865
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.95 E-value=1.3e-09 Score=98.93 Aligned_cols=138 Identities=12% Similarity=0.197 Sum_probs=69.1
Q ss_pred CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccc--c-
Q 021510 155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISEN--R- 231 (311)
Q Consensus 155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~--~- 231 (311)
.++++|++++|.|+.+-. ..+..+.+|..|.+++ ++++-+ |...+..+++|+.|++..+. ++.+-... +
T Consensus 173 ~ni~~L~La~N~It~l~~-----~~F~~lnsL~tlkLsr-NrittL-p~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL 244 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLET-----GHFDSLNSLLTLKLSR-NRITTL-PQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGL 244 (873)
T ss_pred CCceEEeecccccccccc-----ccccccchheeeeccc-Cccccc-CHHHhhhcchhhhhhccccc-eeeehhhhhcCc
Confidence 456666666666555522 2244555666666666 344444 33335556666666666553 33220000 0
Q ss_pred --------------ccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccc-cccccCCCCCc
Q 021510 232 --------------TDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFA-ADLSQNNENDQ 296 (311)
Q Consensus 232 --------------~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~~~~~~~~~~ 296 (311)
....+++..+.++++|+++. .+++.+..+. -..+++|+.|++++. .+.++. ..+.--.....
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~-lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~ 321 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGW-LFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKE 321 (873)
T ss_pred hhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhccc-ccccchhhhhccchh-hhheeecchhhhccccee
Confidence 00112333466666666664 4555555443 246888888888763 344333 22333334444
Q ss_pred ccccccc
Q 021510 297 LGIPAQQ 303 (311)
Q Consensus 297 ~~~~~~~ 303 (311)
++++.++
T Consensus 322 LdLs~N~ 328 (873)
T KOG4194|consen 322 LDLSSNR 328 (873)
T ss_pred Eeccccc
Confidence 4444444
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.92 E-value=4.2e-11 Score=109.33 Aligned_cols=222 Identities=17% Similarity=0.240 Sum_probs=106.5
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
..+|.|+.+++.+. ++..- ..+..+-.+..|..|++++. +++.. |..+...+++-+|.++. .+++.+|.
T Consensus 75 s~Lp~LRsv~~R~N-~LKns-GiP~diF~l~dLt~lDLShN-qL~Ev--P~~LE~AKn~iVLNLS~-N~IetIPn----- 143 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDN-NLKNS-GIPTDIFRLKDLTILDLSHN-QLREV--PTNLEYAKNSIVLNLSY-NNIETIPN----- 143 (1255)
T ss_pred ccchhhHHHhhhcc-ccccC-CCCchhcccccceeeecchh-hhhhc--chhhhhhcCcEEEEccc-CccccCCc-----
Confidence 34667777776663 34431 11445566777888888773 55555 56667777777888777 45666652
Q ss_pred ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE 164 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (311)
..+.++..|-.|++++. +++.+|....... .+..+.++. +.+... -+..+-++.+|+.|++++
T Consensus 144 ---~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~--------~LqtL~Ls~---NPL~hf--QLrQLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 144 ---SLFINLTDLLFLDLSNN-RLEMLPPQIRRLS--------MLQTLKLSN---NPLNHF--QLRQLPSMTSLSVLHMSN 206 (1255)
T ss_pred ---hHHHhhHhHhhhccccc-hhhhcCHHHHHHh--------hhhhhhcCC---ChhhHH--HHhcCccchhhhhhhccc
Confidence 22234444555555543 3444433211000 000000000 000000 001112244555555555
Q ss_pred e--eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCC
Q 021510 165 I--NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFP 242 (311)
Q Consensus 165 ~--~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 242 (311)
. .+..+ |.++..+++|+.++++. +++..+ |.. +-++++|+.|++++++ ++++-...+ . ..
T Consensus 207 TqRTl~N~------Ptsld~l~NL~dvDlS~-N~Lp~v-Pec-ly~l~~LrrLNLS~N~-iteL~~~~~--~------W~ 268 (1255)
T KOG0444|consen 207 TQRTLDNI------PTSLDDLHNLRDVDLSE-NNLPIV-PEC-LYKLRNLRRLNLSGNK-ITELNMTEG--E------WE 268 (1255)
T ss_pred ccchhhcC------CCchhhhhhhhhccccc-cCCCcc-hHH-HhhhhhhheeccCcCc-eeeeeccHH--H------Hh
Confidence 5 22222 55555666666666654 455544 444 4456666666666665 555422111 1 44
Q ss_pred ccCeEecccCcccccccCCCcccCCCcccEEEE
Q 021510 243 QLTTLKLQDLPKLRCLYPGMHSSEWPALEILLV 275 (311)
Q Consensus 243 ~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i 275 (311)
+|++|.++. ++|+.+|... ..++.|.+|++
T Consensus 269 ~lEtLNlSr-NQLt~LP~av--cKL~kL~kLy~ 298 (1255)
T KOG0444|consen 269 NLETLNLSR-NQLTVLPDAV--CKLTKLTKLYA 298 (1255)
T ss_pred hhhhhcccc-chhccchHHH--hhhHHHHHHHh
Confidence 555555554 3444444433 33444444444
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.85 E-value=7.9e-11 Score=107.58 Aligned_cols=259 Identities=15% Similarity=0.176 Sum_probs=161.8
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
..+.+|++|.+... ++..+ ...+..++.||.+.+++ .++++...|..+-.+..|..|+++. ..+.++|.
T Consensus 52 ~~lqkLEHLs~~HN-~L~~v---hGELs~Lp~LRsv~~R~-N~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~----- 120 (1255)
T KOG0444|consen 52 SRLQKLEHLSMAHN-QLISV---HGELSDLPRLRSVIVRD-NNLKNSGIPTDIFRLKDLTILDLSH-NQLREVPT----- 120 (1255)
T ss_pred HHHhhhhhhhhhhh-hhHhh---hhhhccchhhHHHhhhc-cccccCCCCchhcccccceeeecch-hhhhhcch-----
Confidence 34678888888884 45555 45568899999999988 4677665577777888999999988 45666653
Q ss_pred ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE 164 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (311)
++..-.++-.|.+++. +++.+|......- ..+-..+.+++.+..-++ ....+.+|++|.+++
T Consensus 121 ----~LE~AKn~iVLNLS~N-~IetIPn~lfinL----------tDLLfLDLS~NrLe~LPP---Q~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 121 ----NLEYAKNSIVLNLSYN-NIETIPNSLFINL----------TDLLFLDLSNNRLEMLPP---QIRRLSMLQTLKLSN 182 (1255)
T ss_pred ----hhhhhcCcEEEEcccC-ccccCCchHHHhh----------HhHhhhccccchhhhcCH---HHHHHhhhhhhhcCC
Confidence 2334455667777765 5555554221100 001111122222222222 223367788888888
Q ss_pred eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510 165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL 244 (311)
Q Consensus 165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 244 (311)
|-+...- -.++..+++|..|.+++-.+..+-+|.+ +..+.+|..++++.+. +..++. .... +++|
T Consensus 183 NPL~hfQ-----LrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~-Lp~vPe--cly~------l~~L 247 (1255)
T KOG0444|consen 183 NPLNHFQ-----LRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENN-LPIVPE--CLYK------LRNL 247 (1255)
T ss_pred ChhhHHH-----HhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccC-CCcchH--HHhh------hhhh
Confidence 8222110 1344566778888888766555444665 6778888988888765 665532 2222 8899
Q ss_pred CeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCccccccc-----cccCCCCCC
Q 021510 245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQ-----QLPLPLGKV 311 (311)
Q Consensus 245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 311 (311)
+.|.+++ ++++.+.... ..|..||.|.++. .+++.+|..++......-+-...+ +||.-.||+
T Consensus 248 rrLNLS~-N~iteL~~~~--~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 248 RRLNLSG-NKITELNMTE--GEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred heeccCc-CceeeeeccH--HHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 9999998 6777776554 4688899999987 577788877665544333333322 477777764
No 10
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.84 E-value=4.6e-11 Score=104.08 Aligned_cols=94 Identities=16% Similarity=0.299 Sum_probs=59.8
Q ss_pred CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510 8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA 87 (311)
Q Consensus 8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 87 (311)
.-|++|.+.||.....-.. -......+|++.|++.+|.++++.........+++|++|.+..|..+....-..
T Consensus 138 g~lk~LSlrG~r~v~~ssl-rt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~------ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSL-RTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY------ 210 (483)
T ss_pred cccccccccccccCCcchh-hHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH------
Confidence 3467777887765443111 112245678888888888877775545566678888888888887776543211
Q ss_pred cceeeecccceEecCCCCCccc
Q 021510 88 IEKIEFAQLRSLSLGNLPEVTS 109 (311)
Q Consensus 88 ~~~~~l~~L~~L~l~~~~~l~~ 109 (311)
....+++|+++.++.|+.++.
T Consensus 211 -la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 211 -LAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred -HHHhhhhHHHhhhccCchhhc
Confidence 113567788888877776655
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.83 E-value=6.4e-09 Score=100.66 Aligned_cols=38 Identities=26% Similarity=0.272 Sum_probs=16.6
Q ss_pred CccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccc
Q 021510 242 PQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFA 285 (311)
Q Consensus 242 ~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp 285 (311)
++|+.|++++| .++.++... ..+|+.|++++| ++..+|
T Consensus 367 ~~L~~LdLs~N-~Lt~LP~~l----~~sL~~LdLs~N-~L~~LP 404 (754)
T PRK15370 367 PTITTLDVSRN-ALTNLPENL----PAALQIMQASRN-NLVRLP 404 (754)
T ss_pred CCcCEEECCCC-cCCCCCHhH----HHHHHHHhhccC-CcccCc
Confidence 45555555553 344443321 123555555543 333443
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.80 E-value=2.1e-08 Score=96.85 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=47.7
Q ss_pred CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc---
Q 021510 8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV--- 84 (311)
Q Consensus 8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~--- 84 (311)
++|+.|++.++ +++.++. ..++|++|+++++ +++.+ |. ..++|++|++.++. +..++.....-
T Consensus 222 ~~L~~L~L~~N-~Lt~LP~------lp~~Lk~LdLs~N-~LtsL--P~---lp~sL~~L~Ls~N~-L~~Lp~lp~~L~~L 287 (788)
T PRK15387 222 AHITTLVIPDN-NLTSLPA------LPPELRTLEVSGN-QLTSL--PV---LPPGLLELSIFSNP-LTHLPALPSGLCKL 287 (788)
T ss_pred cCCCEEEccCC-cCCCCCC------CCCCCcEEEecCC-ccCcc--cC---cccccceeeccCCc-hhhhhhchhhcCEE
Confidence 46788888873 5666522 2478888888775 56655 21 23566666666642 22222110000
Q ss_pred c-cccce----eeecccceEecCCCCCccccc
Q 021510 85 D-NAIEK----IEFAQLRSLSLGNLPEVTSFC 111 (311)
Q Consensus 85 ~-~~~~~----~~l~~L~~L~l~~~~~l~~l~ 111 (311)
. ....+ ..+++|+.|+++++ +++.++
T Consensus 288 ~Ls~N~Lt~LP~~p~~L~~LdLS~N-~L~~Lp 318 (788)
T PRK15387 288 WIFGNQLTSLPVLPPGLQELSVSDN-QLASLP 318 (788)
T ss_pred ECcCCccccccccccccceeECCCC-ccccCC
Confidence 0 00000 12467888888876 555544
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.79 E-value=4.4e-08 Score=94.73 Aligned_cols=76 Identities=13% Similarity=0.061 Sum_probs=51.0
Q ss_pred ccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccc
Q 021510 10 LQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIE 89 (311)
Q Consensus 10 L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 89 (311)
-..|+++++ +++.++. .+ .++|+.|++.++ +++.+ |. ..++|++|+++++ .+..++.
T Consensus 203 ~~~LdLs~~-~LtsLP~---~l--~~~L~~L~L~~N-~Lt~L--P~---lp~~Lk~LdLs~N-~LtsLP~---------- 259 (788)
T PRK15387 203 NAVLNVGES-GLTTLPD---CL--PAHITTLVIPDN-NLTSL--PA---LPPELRTLEVSGN-QLTSLPV---------- 259 (788)
T ss_pred CcEEEcCCC-CCCcCCc---ch--hcCCCEEEccCC-cCCCC--CC---CCCCCcEEEecCC-ccCcccC----------
Confidence 456788886 5766522 22 258999999884 67765 22 3689999999985 6666652
Q ss_pred eeeecccceEecCCCCCccccc
Q 021510 90 KIEFAQLRSLSLGNLPEVTSFC 111 (311)
Q Consensus 90 ~~~l~~L~~L~l~~~~~l~~l~ 111 (311)
..++|+.|++.++ .++.++
T Consensus 260 --lp~sL~~L~Ls~N-~L~~Lp 278 (788)
T PRK15387 260 --LPPGLLELSIFSN-PLTHLP 278 (788)
T ss_pred --cccccceeeccCC-chhhhh
Confidence 2467888888776 355444
No 14
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.71 E-value=1.5e-10 Score=100.88 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=47.4
Q ss_pred CCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCcccccc
Q 021510 35 NQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCC 112 (311)
Q Consensus 35 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 112 (311)
.-||.|.++||..+.+-..-.....+|++++|.+.+|..+....... --..+++|+++.+..|+++++...
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s-------la~~C~~l~~l~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS-------LARYCRKLRHLNLHSCSSITDVSL 208 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH-------HHHhcchhhhhhhcccchhHHHHH
Confidence 46788888888777654333345678888888888887665532111 113578888888888887776543
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.69 E-value=7.1e-08 Score=93.56 Aligned_cols=210 Identities=15% Similarity=0.148 Sum_probs=119.2
Q ss_pred CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510 8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA 87 (311)
Q Consensus 8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 87 (311)
.+..+|++.+. +++.++.. -.++|+.|+++++ +++.+ +..+ +.+|++|+++++ .+..++.
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~-----Ip~~L~~L~Ls~N-~LtsL--P~~l--~~nL~~L~Ls~N-~LtsLP~-------- 237 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPAC-----IPEQITTLILDNN-ELKSL--PENL--QGNIKTLYANSN-QLTSIPA-------- 237 (754)
T ss_pred cCceEEEeCCC-CcCcCCcc-----cccCCcEEEecCC-CCCcC--Chhh--ccCCCEEECCCC-ccccCCh--------
Confidence 34566777664 35554221 1246777777764 55554 2222 357778877765 3444442
Q ss_pred cceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeec
Q 021510 88 IEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINV 167 (311)
Q Consensus 88 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 167 (311)
...++|+.|+++++ ++..++.... ..+..+.+.. +.+..-+ .. -.++|+.|++++|++
T Consensus 238 ---~l~~~L~~L~Ls~N-~L~~LP~~l~----------s~L~~L~Ls~---N~L~~LP---~~--l~~sL~~L~Ls~N~L 295 (754)
T PRK15370 238 ---TLPDTIQEMELSIN-RITELPERLP----------SALQSLDLFH---NKISCLP---EN--LPEELRYLSVYDNSI 295 (754)
T ss_pred ---hhhccccEEECcCC-ccCcCChhHh----------CCCCEEECcC---CccCccc---cc--cCCCCcEEECCCCcc
Confidence 12246777777776 3444433210 0011111111 1111000 00 125788888888877
Q ss_pred eeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeE
Q 021510 168 DQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTL 247 (311)
Q Consensus 168 ~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L 247 (311)
+.+ |..+ .++|+.|++.++ .+..+ |.. ..++|++|++++|. ++.++. . ..++|+.|
T Consensus 296 t~L------P~~l--p~sL~~L~Ls~N-~Lt~L-P~~---l~~sL~~L~Ls~N~-Lt~LP~--~--------l~~sL~~L 351 (754)
T PRK15370 296 RTL------PAHL--PSGITHLNVQSN-SLTAL-PET---LPPGLKTLEAGENA-LTSLPA--S--------LPPELQVL 351 (754)
T ss_pred ccC------cccc--hhhHHHHHhcCC-ccccC-Ccc---ccccceeccccCCc-cccCCh--h--------hcCcccEE
Confidence 765 3222 246888888874 55544 432 23679999999986 665532 1 15789999
Q ss_pred ecccCcccccccCCCcccCCCcccEEEEecCCCccccccccc
Q 021510 248 KLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLS 289 (311)
Q Consensus 248 ~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~ 289 (311)
+++++ +++.++... .++|++|++.+| ++..+|..+.
T Consensus 352 ~Ls~N-~L~~LP~~l----p~~L~~LdLs~N-~Lt~LP~~l~ 387 (754)
T PRK15370 352 DVSKN-QITVLPETL----PPTITTLDVSRN-ALTNLPENLP 387 (754)
T ss_pred ECCCC-CCCcCChhh----cCCcCEEECCCC-cCCCCCHhHH
Confidence 99986 566666432 468999999997 5777876543
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.69 E-value=7.5e-09 Score=98.54 Aligned_cols=219 Identities=19% Similarity=0.204 Sum_probs=121.0
Q ss_pred CCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccc-------------ccccc-cccceeeecccceEe
Q 021510 35 NQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSI-------------GEEVD-NAIEKIEFAQLRSLS 100 (311)
Q Consensus 35 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~-------------~~~~~-~~~~~~~l~~L~~L~ 100 (311)
.+|++++++. .+++.+ |.+++.+.+|+.+++.... +..++.. ..+-+ .......+.+|++|+
T Consensus 241 ~nl~~~dis~-n~l~~l--p~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISH-NNLSNL--PEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecch-hhhhcc--hHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeee
Confidence 6788888887 456666 5888889999999886643 2222111 00000 011223467888888
Q ss_pred cCCCCCccccccCCCCCC---------------CCCCccccccccccc-ccccccccccccccccccccCCCccEEEeee
Q 021510 101 LGNLPEVTSFCCEVETPS---------------ASPNRQVSQEESTAM-YCSSEITLDISTLLFNEKVALPNLEVLEISE 164 (311)
Q Consensus 101 l~~~~~l~~l~~~~~~~~---------------~~~~~~~~~~~~l~l-~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (311)
+... ++.+++....... ..+.........+.. +..+..-...|.+. +..+.+|+.|++++
T Consensus 317 L~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~---l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 317 LQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV---LVNFKHLKVLHLSY 392 (1081)
T ss_pred ehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh---hccccceeeeeecc
Confidence 8765 5555554211100 000000000000000 00111112223332 23467777777777
Q ss_pred eeceeeeccCCCCC-CCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCc
Q 021510 165 INVDQIWHYNHLPV-TFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQ 243 (311)
Q Consensus 165 ~~l~~i~~~~~~p~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 243 (311)
|.+..+ |. .+.++..|+.|++++ ++++.+ |.. ..++..|+.|...++. +...+ +... ++.
T Consensus 393 NrL~~f------pas~~~kle~LeeL~LSG-NkL~~L-p~t-va~~~~L~tL~ahsN~-l~~fP---e~~~------l~q 453 (1081)
T KOG0618|consen 393 NRLNSF------PASKLRKLEELEELNLSG-NKLTTL-PDT-VANLGRLHTLRAHSNQ-LLSFP---ELAQ------LPQ 453 (1081)
T ss_pred cccccC------CHHHHhchHHhHHHhccc-chhhhh-hHH-HHhhhhhHHHhhcCCc-eeech---hhhh------cCc
Confidence 766655 32 356677777777777 466655 443 5566777777766654 44443 1112 788
Q ss_pred cCeEecccCcccccccCCCcccCCCcccEEEEecCCCcc
Q 021510 244 LTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLK 282 (311)
Q Consensus 244 L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~ 282 (311)
|+.++++ |..|+.+.... +..++.|++|++.|.+++.
T Consensus 454 L~~lDlS-~N~L~~~~l~~-~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 454 LKVLDLS-CNNLSEVTLPE-ALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred ceEEecc-cchhhhhhhhh-hCCCcccceeeccCCcccc
Confidence 8888887 57887765543 2345889999999988653
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.66 E-value=4.8e-11 Score=103.58 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=36.4
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINC 71 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 71 (311)
..++.|.+|++.+. ++..+ ++.++.+.+++.++++.. ++..+ |..++++++|.+++++..
T Consensus 65 ~nL~~l~vl~~~~n-~l~~l---p~aig~l~~l~~l~vs~n-~ls~l--p~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 65 KNLACLTVLNVHDN-KLSQL---PAAIGELEALKSLNVSHN-KLSEL--PEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hcccceeEEEeccc-hhhhC---CHHHHHHHHHHHhhcccc-hHhhc--cHHHhhhhhhhhhhcccc
Confidence 34556666666663 34443 555566777777777663 44444 566667777777776663
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.50 E-value=1.3e-08 Score=89.78 Aligned_cols=66 Identities=11% Similarity=-0.051 Sum_probs=32.7
Q ss_pred CCcccEEeeccccccccc--ccccccccCCCCccEEEEcCCCCCc--c-c-ccchhhhccCcccEEEEccccc
Q 021510 7 FPLLQSLILHNLINMERL--CIDRLKVESFNQLKNIEAYNCDKLS--N-I-FWFSTTKCLPRLERIAVINCSK 73 (311)
Q Consensus 7 l~~L~~L~L~~~~~l~~l--~~~~~~~~~l~~L~~L~l~~c~~l~--~-~-~~~~~~~~l~~L~~L~i~~c~~ 73 (311)
+++|++|++.++. ++.. ..........+++++|+++++..-. . + ..+..+..+++|++|++++|..
T Consensus 22 l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 22 LLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 3457777777754 3110 0001223455667777776653220 0 0 0022344566777777777654
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.47 E-value=1.3e-07 Score=93.10 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=62.1
Q ss_pred CcccEEeeccccc-ccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccc
Q 021510 8 PLLQSLILHNLIN-MERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDN 86 (311)
Q Consensus 8 ~~L~~L~L~~~~~-l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 86 (311)
+.|++|-+.+... +..+. ...+..++.|+.|++++|..+..+ |..++.+-+||.|++++ ..+..+|.
T Consensus 545 ~~L~tLll~~n~~~l~~is--~~ff~~m~~LrVLDLs~~~~l~~L--P~~I~~Li~LryL~L~~-t~I~~LP~------- 612 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEIS--GEFFRSLPLLRVLDLSGNSSLSKL--PSSIGELVHLRYLDLSD-TGISHLPS------- 612 (889)
T ss_pred CccceEEEeecchhhhhcC--HHHHhhCcceEEEECCCCCccCcC--ChHHhhhhhhhcccccC-CCccccch-------
Confidence 4566666666432 22221 122567888999999988888887 78888899999998887 45666664
Q ss_pred ccceeeecccceEecCCCCCcccc
Q 021510 87 AIEKIEFAQLRSLSLGNLPEVTSF 110 (311)
Q Consensus 87 ~~~~~~l~~L~~L~l~~~~~l~~l 110 (311)
++..+.+|.+|++.....+..+
T Consensus 613 --~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 613 --GLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred --HHHHHHhhheeccccccccccc
Confidence 5677888888888876665554
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.47 E-value=4e-09 Score=81.76 Aligned_cols=154 Identities=16% Similarity=0.238 Sum_probs=81.3
Q ss_pred CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510 8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA 87 (311)
Q Consensus 8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 87 (311)
.+..+|.++.. +++.+ ++.+..+.+|+.|++.+ ..++.+ |..+.+++.|+.|.+.- ..+..++
T Consensus 33 s~ITrLtLSHN-Kl~~v---ppnia~l~nlevln~~n-nqie~l--p~~issl~klr~lnvgm-nrl~~lp--------- 95 (264)
T KOG0617|consen 33 SNITRLTLSHN-KLTVV---PPNIAELKNLEVLNLSN-NQIEEL--PTSISSLPKLRILNVGM-NRLNILP--------- 95 (264)
T ss_pred hhhhhhhcccC-ceeec---CCcHHHhhhhhhhhccc-chhhhc--Chhhhhchhhhheecch-hhhhcCc---------
Confidence 34444455542 23333 44456666666666655 345555 44555666666666542 3333333
Q ss_pred cceeeecccceEecCCCCCccc--cccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee
Q 021510 88 IEKIEFAQLRSLSLGNLPEVTS--FCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI 165 (311)
Q Consensus 88 ~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (311)
.+++.||-|+.|+++.. ++.. +|.. +-.+..|+.|++.++
T Consensus 96 rgfgs~p~levldltyn-nl~e~~lpgn-------------------------------------ff~m~tlralyl~dn 137 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYN-NLNENSLPGN-------------------------------------FFYMTTLRALYLGDN 137 (264)
T ss_pred cccCCCchhhhhhcccc-ccccccCCcc-------------------------------------hhHHHHHHHHHhcCC
Confidence 24556666666666543 2221 1110 011355566666666
Q ss_pred eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccccccee
Q 021510 166 NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEI 226 (311)
Q Consensus 166 ~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 226 (311)
..+.+ |+.++.+++|+.|.+++. .+-++ |.+ ++.+++|++|.|.++. ++-+
T Consensus 138 dfe~l------p~dvg~lt~lqil~lrdn-dll~l-pke-ig~lt~lrelhiqgnr-l~vl 188 (264)
T KOG0617|consen 138 DFEIL------PPDVGKLTNLQILSLRDN-DLLSL-PKE-IGDLTRLRELHIQGNR-LTVL 188 (264)
T ss_pred CcccC------ChhhhhhcceeEEeeccC-chhhC-cHH-HHHHHHHHHHhcccce-eeec
Confidence 44433 555667777777777763 33334 544 6667777777777765 5544
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.46 E-value=4e-08 Score=86.61 Aligned_cols=227 Identities=18% Similarity=0.053 Sum_probs=115.6
Q ss_pred cCCcccEEeecccccccc----cccccccccCCCCccEEEEcCCCCCcccccchhhhcc---CcccEEEEccccccceec
Q 021510 6 AFPLLQSLILHNLINMER----LCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCL---PRLERIAVINCSKMKEIF 78 (311)
Q Consensus 6 ~l~~L~~L~L~~~~~l~~----l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l---~~L~~L~i~~c~~l~~~~ 78 (311)
..++|++|++.++. +.. +......+..+++|++|++++|..-... +..+..+ ++|++|++++|.....-.
T Consensus 49 ~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~~~~L~~L~ls~~~~~~~~~ 125 (319)
T cd00116 49 PQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG--CGVLESLLRSSSLQELKLNNNGLGDRGL 125 (319)
T ss_pred hCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH--HHHHHHHhccCcccEEEeeCCccchHHH
Confidence 35678999998864 221 1011223456789999999998654322 2333334 449999999985331100
Q ss_pred ccccccccccceeee-cccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCc
Q 021510 79 SIGEEVDNAIEKIEF-AQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNL 157 (311)
Q Consensus 79 ~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L 157 (311)
. .....+..+ ++|+.|++.+|. ++.-... .+...+..+++|
T Consensus 126 ~-----~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~--------------------------------~~~~~~~~~~~L 167 (319)
T cd00116 126 R-----LLAKGLKDLPPALEKLVLGRNR-LEGASCE--------------------------------ALAKALRANRDL 167 (319)
T ss_pred H-----HHHHHHHhCCCCceEEEcCCCc-CCchHHH--------------------------------HHHHHHHhCCCc
Confidence 0 000123345 789999999883 3321100 000111235678
Q ss_pred cEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccc---hHHHhccCCCcEEEEccccccceecccccccC
Q 021510 158 EVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFS---ASMIRSLKQLQRLEICSCEDLQEIISENRTDQ 234 (311)
Q Consensus 158 ~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 234 (311)
++|++++|.+..... ...+..+..+++|++|++++|. +..... ...+..+++|++|++++|+ +.+.....-...
T Consensus 168 ~~L~l~~n~l~~~~~-~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~ 244 (319)
T cd00116 168 KELNLANNGIGDAGI-RALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASA 244 (319)
T ss_pred CEEECcCCCCchHHH-HHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHH
Confidence 888888775543100 0011223344678888888763 322211 1224456778888888875 443110000000
Q ss_pred cCCcccCCccCeEecccCccccccc---CCCcccCCCcccEEEEecCC
Q 021510 235 VIPYFVFPQLTTLKLQDLPKLRCLY---PGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 235 ~~~~~~~~~L~~L~l~~c~~L~~l~---~~~~~~~~~~L~~L~i~~c~ 279 (311)
. ....+.|++|++++|. +++.. .......++.|+++++.++.
T Consensus 245 -~-~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 245 -L-LSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred -H-hccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 0 0013678888887763 32111 00111244677777777654
No 22
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.45 E-value=2.6e-09 Score=93.04 Aligned_cols=213 Identities=20% Similarity=0.274 Sum_probs=116.1
Q ss_pred cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510 9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI 88 (311)
Q Consensus 9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 88 (311)
.++.|+.+.. ++.++ +..++++.+|+.|+++.. .+..+ ++.++.+-.|+.++-.+ ..+...++
T Consensus 92 ~l~~l~vs~n-~ls~l---p~~i~s~~~l~~l~~s~n-~~~el--~~~i~~~~~l~dl~~~~-N~i~slp~--------- 154 (565)
T KOG0472|consen 92 ALKSLNVSHN-KLSEL---PEQIGSLISLVKLDCSSN-ELKEL--PDSIGRLLDLEDLDATN-NQISSLPE--------- 154 (565)
T ss_pred HHHHhhcccc-hHhhc---cHHHhhhhhhhhhhcccc-ceeec--CchHHHHhhhhhhhccc-cccccCch---------
Confidence 4445555553 34444 556677777777777663 34443 45556666677766555 34444442
Q ss_pred ceeeecccceEecCCCCCccccccCCCCCCCCCCccccccccccccccccccccccc----ccccccccCCCccEEEeee
Q 021510 89 EKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDIST----LLFNEKVALPNLEVLEISE 164 (311)
Q Consensus 89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~----~~~~~~~~l~~L~~L~l~~ 164 (311)
+.+.+.+|..+.+.+. +++.++...+. +.+.. .+..|. .+..+.+.+.+|+-|++..
T Consensus 155 ~~~~~~~l~~l~~~~n-~l~~l~~~~i~----------------m~~L~--~ld~~~N~L~tlP~~lg~l~~L~~LyL~~ 215 (565)
T KOG0472|consen 155 DMVNLSKLSKLDLEGN-KLKALPENHIA----------------MKRLK--HLDCNSNLLETLPPELGGLESLELLYLRR 215 (565)
T ss_pred HHHHHHHHHHhhcccc-chhhCCHHHHH----------------HHHHH--hcccchhhhhcCChhhcchhhhHHHHhhh
Confidence 3445556666655553 33333321110 00000 000000 0112234466777777777
Q ss_pred eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510 165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL 244 (311)
Q Consensus 165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 244 (311)
+++..+ | .++.++.|+++++.. +.++-+ |.+...+++++..|++.+++ +++++. +..- +.+|
T Consensus 216 Nki~~l------P-ef~gcs~L~Elh~g~-N~i~~l-pae~~~~L~~l~vLDLRdNk-lke~Pd--e~cl------LrsL 277 (565)
T KOG0472|consen 216 NKIRFL------P-EFPGCSLLKELHVGE-NQIEML-PAEHLKHLNSLLVLDLRDNK-LKEVPD--EICL------LRSL 277 (565)
T ss_pred cccccC------C-CCCccHHHHHHHhcc-cHHHhh-HHHHhcccccceeeeccccc-cccCch--HHHH------hhhh
Confidence 766655 3 556777777777776 455544 66666677777777777776 776643 3222 6667
Q ss_pred CeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
..|++++ ..+..++... .++ .|+.|-+.|.|
T Consensus 278 ~rLDlSN-N~is~Lp~sL--gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 278 ERLDLSN-NDISSLPYSL--GNL-HLKFLALEGNP 308 (565)
T ss_pred hhhcccC-CccccCCccc--ccc-eeeehhhcCCc
Confidence 7777776 5566665544 344 56666666655
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.8e-08 Score=88.61 Aligned_cols=89 Identities=19% Similarity=0.284 Sum_probs=47.1
Q ss_pred CCCccEEEeeeee-ceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccc
Q 021510 154 LPNLEVLEISEIN-VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRT 232 (311)
Q Consensus 154 l~~L~~L~l~~~~-l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 232 (311)
+|+|+.|++.+|. +..- ..+...++.|+.|++.+.+.+..- -....+.++.|+.|.++.|. +.++-..+.+
T Consensus 221 fPsl~~L~L~~N~~~~~~------~~~~~i~~~L~~LdLs~N~li~~~-~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~ 292 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIK------ATSTKILQTLQELDLSNNNLIDFD-QGYKVGTLPGLNQLNLSSTG-IASIAEPDVE 292 (505)
T ss_pred CCcHHHhhhhccccccee------cchhhhhhHHhhccccCCcccccc-cccccccccchhhhhccccC-cchhcCCCcc
Confidence 5777777777662 2211 122345566777777774443322 22235567777777777776 5555433321
Q ss_pred cCcCCcccCCccCeEeccc
Q 021510 233 DQVIPYFVFPQLTTLKLQD 251 (311)
Q Consensus 233 ~~~~~~~~~~~L~~L~l~~ 251 (311)
.......|++|+.|.+..
T Consensus 293 -s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 293 -SLDKTHTFPKLEYLNISE 310 (505)
T ss_pred -chhhhcccccceeeeccc
Confidence 111122377777777665
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.35 E-value=6.4e-09 Score=80.65 Aligned_cols=162 Identities=20% Similarity=0.308 Sum_probs=107.7
Q ss_pred cCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccc
Q 021510 32 ESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFC 111 (311)
Q Consensus 32 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 111 (311)
-.+.+.+.|.+++. +++.+ ++.+..+.+|+.|.+++ ..+++++. .+..+++|+.|.++- .++..+|
T Consensus 30 f~~s~ITrLtLSHN-Kl~~v--ppnia~l~nlevln~~n-nqie~lp~---------~issl~klr~lnvgm-nrl~~lp 95 (264)
T KOG0617|consen 30 FNMSNITRLTLSHN-KLTVV--PPNIAELKNLEVLNLSN-NQIEELPT---------SISSLPKLRILNVGM-NRLNILP 95 (264)
T ss_pred cchhhhhhhhcccC-ceeec--CCcHHHhhhhhhhhccc-chhhhcCh---------hhhhchhhhheecch-hhhhcCc
Confidence 45567777888874 55555 55667788899998887 56666663 556778888877753 2333332
Q ss_pred cCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEE
Q 021510 112 CEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIV 191 (311)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i 191 (311)
. .++++|-|+.|+++.+++.+- .+|..+..+..|+.|++
T Consensus 96 r-------------------------------------gfgs~p~levldltynnl~e~----~lpgnff~m~tlralyl 134 (264)
T KOG0617|consen 96 R-------------------------------------GFGSFPALEVLDLTYNNLNEN----SLPGNFFYMTTLRALYL 134 (264)
T ss_pred c-------------------------------------ccCCCchhhhhhccccccccc----cCCcchhHHHHHHHHHh
Confidence 2 234578888888888866543 33666777788888888
Q ss_pred ecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCC
Q 021510 192 WHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPG 261 (311)
Q Consensus 192 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~ 261 (311)
++ +..+.+ |.. .+++++|+-|.+.+++ +-.++- +.+. +++|++|.|.+ ..|+-++.+
T Consensus 135 ~d-ndfe~l-p~d-vg~lt~lqil~lrdnd-ll~lpk--eig~------lt~lrelhiqg-nrl~vlppe 191 (264)
T KOG0617|consen 135 GD-NDFEIL-PPD-VGKLTNLQILSLRDND-LLSLPK--EIGD------LTRLRELHIQG-NRLTVLPPE 191 (264)
T ss_pred cC-CCcccC-Chh-hhhhcceeEEeeccCc-hhhCcH--HHHH------HHHHHHHhccc-ceeeecChh
Confidence 88 456655 555 6888888888888877 433422 2222 78888888877 566666543
No 25
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.26 E-value=6.2e-06 Score=73.86 Aligned_cols=61 Identities=15% Similarity=0.276 Sum_probs=38.4
Q ss_pred CCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCcccc
Q 021510 33 SFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSF 110 (311)
Q Consensus 33 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 110 (311)
.+.++++|++++| .++.+ | .--.+|++|.+++|..+..++. ...++|++|.+++|.++..+
T Consensus 50 ~~~~l~~L~Is~c-~L~sL--P---~LP~sLtsL~Lsnc~nLtsLP~-----------~LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 50 EARASGRLYIKDC-DIESL--P---VLPNELTEITIENCNNLTTLPG-----------SIPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HhcCCCEEEeCCC-CCccc--C---CCCCCCcEEEccCCCCcccCCc-----------hhhhhhhheEccCccccccc
Confidence 3577778888877 56555 2 1233578888877777766552 12357778888777666543
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.20 E-value=2.2e-06 Score=68.32 Aligned_cols=111 Identities=23% Similarity=0.339 Sum_probs=40.4
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD 233 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 233 (311)
+.+|+.|++++|+++.+ .++..++.|+.|++++ +.++++ .......+++|++|+++++. +.++-.-
T Consensus 41 l~~L~~L~Ls~N~I~~l-------~~l~~L~~L~~L~L~~-N~I~~i-~~~l~~~lp~L~~L~L~~N~-I~~l~~l---- 106 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL-------EGLPGLPRLKTLDLSN-NRISSI-SEGLDKNLPNLQELYLSNNK-ISDLNEL---- 106 (175)
T ss_dssp -TT--EEE-TTS--S---------TT----TT--EEE--S-S---S--CHHHHHH-TT--EEE-TTS----SCCCC----
T ss_pred hcCCCEEECCCCCCccc-------cCccChhhhhhcccCC-CCCCcc-ccchHHhCCcCCEEECcCCc-CCChHHh----
Confidence 56777777777777766 4455677788887777 566655 32323457788888887775 5544211
Q ss_pred CcCCcccCCccCeEecccCcccccc-cCCCcccCCCcccEEEEecCCC
Q 021510 234 QVIPYFVFPQLTTLKLQDLPKLRCL-YPGMHSSEWPALEILLVYGCDK 280 (311)
Q Consensus 234 ~~~~~~~~~~L~~L~l~~c~~L~~l-~~~~~~~~~~~L~~L~i~~c~~ 280 (311)
.....+++|+.|++.++|--+.- +...+...+|+|+.|+-.....
T Consensus 107 --~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 107 --EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp --GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred --HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccH
Confidence 11223777777777776542110 0111122566666666554443
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=4e-08 Score=82.65 Aligned_cols=187 Identities=17% Similarity=0.153 Sum_probs=94.5
Q ss_pred CccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccCCC
Q 021510 36 QLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVE 115 (311)
Q Consensus 36 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 115 (311)
.|++|++++ ..++.-.-...+..|.+|+.|.+.+..-=..+. ..+.+-..|+.|+++.|..++.......
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~---------~~iAkN~~L~~lnlsm~sG~t~n~~~ll 255 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV---------NTIAKNSNLVRLNLSMCSGFTENALQLL 255 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHH---------HHHhccccceeeccccccccchhHHHHH
Confidence 466666665 233322112344556666666665532111111 1223445677777777766654433111
Q ss_pred CCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCC-CCcccEEEEecC
Q 021510 116 TPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPR-FQNLTRLIVWHC 194 (311)
Q Consensus 116 ~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~-l~~L~~L~i~~c 194 (311)
+.++..|.+|++++|.++.-... -.+.+ -.+|+.|++++|
T Consensus 256 -----------------------------------~~scs~L~~LNlsWc~l~~~~Vt----v~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 256 -----------------------------------LSSCSRLDELNLSWCFLFTEKVT----VAVAHISETLTQLNLSGY 296 (419)
T ss_pred -----------------------------------HHhhhhHhhcCchHhhccchhhh----HHHhhhchhhhhhhhhhh
Confidence 12356777777777733211000 00001 136777777776
Q ss_pred CC-CccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEE
Q 021510 195 HK-LKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEIL 273 (311)
Q Consensus 195 ~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L 273 (311)
.+ +..-........+|+|..|++++|..++.-.+. . +..|+.|++|.++.|..+---.. .+....|+|.+|
T Consensus 297 rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~------~~kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yL 368 (419)
T KOG2120|consen 297 RRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-E------FFKFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYL 368 (419)
T ss_pred HhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-H------HHhcchheeeehhhhcCCChHHe-eeeccCcceEEE
Confidence 43 332212333556778888888877655542211 1 12277788888888776532111 011346778888
Q ss_pred EEecCC
Q 021510 274 LVYGCD 279 (311)
Q Consensus 274 ~i~~c~ 279 (311)
++.||-
T Consensus 369 dv~g~v 374 (419)
T KOG2120|consen 369 DVFGCV 374 (419)
T ss_pred Eecccc
Confidence 877753
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.8e-07 Score=82.49 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=28.5
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchH-----HHhccCCCcEEEEcccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSAS-----MIRSLKQLQRLEICSCE 221 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~-----~~~~l~~L~~L~l~~c~ 221 (311)
+..|++|+|+++++.+... -...+.|+.|.-|.+..| ++.++-... ....+++|++|.+..++
T Consensus 245 ~~~L~~LdLs~N~li~~~~----~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQ----GYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhHHhhccccCCccccccc----ccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc
Confidence 4556666666663333200 012345555555555553 222221111 12345666666666655
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.14 E-value=3.4e-07 Score=79.88 Aligned_cols=86 Identities=24% Similarity=0.373 Sum_probs=66.0
Q ss_pred cccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccc
Q 021510 151 KVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISEN 230 (311)
Q Consensus 151 ~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 230 (311)
+..+++|++|++++|+++.|-+ ..+....+++.|++.+ +++..+ ...++..+..|+.|++++++ ++.+..
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~-----~aFe~~a~l~eL~L~~-N~l~~v-~~~~f~~ls~L~tL~L~~N~-it~~~~-- 339 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIED-----GAFEGAAELQELYLTR-NKLEFV-SSGMFQGLSGLKTLSLYDNQ-ITTVAP-- 339 (498)
T ss_pred HhhcccceEeccCCCccchhhh-----hhhcchhhhhhhhcCc-chHHHH-HHHhhhccccceeeeecCCe-eEEEec--
Confidence 4568999999999999988822 3467788999999998 677777 66778999999999999997 776632
Q ss_pred cccCcCCcccCCccCeEeccc
Q 021510 231 RTDQVIPYFVFPQLTTLKLQD 251 (311)
Q Consensus 231 ~~~~~~~~~~~~~L~~L~l~~ 251 (311)
.++..+.+|.+|.+-.
T Consensus 340 -----~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 340 -----GAFQTLFSLSTLNLLS 355 (498)
T ss_pred -----ccccccceeeeeehcc
Confidence 2222366777777654
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.05 E-value=6.8e-06 Score=53.60 Aligned_cols=60 Identities=28% Similarity=0.456 Sum_probs=37.6
Q ss_pred CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510 155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE 221 (311)
Q Consensus 155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 221 (311)
|+|++|++++|+++.+. +..+..+++|+.|++++ +.++.+ +...+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~-----~~~f~~l~~L~~L~l~~-N~l~~i-~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIP-----PDSFSNLPNLETLDLSN-NNLTSI-PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEEC-----TTTTTTGTTESEEEETS-SSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccC-----HHHHcCCCCCCEeEccC-CccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence 46677777777666661 23456667777777775 355555 33446667777777777664
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.02 E-value=3e-06 Score=67.55 Aligned_cols=106 Identities=20% Similarity=0.234 Sum_probs=36.5
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCC-CCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFP-RFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRT 232 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~-~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 232 (311)
..++++|++.+++++.| ..++ .+.+|+.|+++++ .++.+. .+..++.|++|+++++. ++.+.. ..
T Consensus 18 ~~~~~~L~L~~n~I~~I-------e~L~~~l~~L~~L~Ls~N-~I~~l~---~l~~L~~L~~L~L~~N~-I~~i~~--~l 83 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI-------ENLGATLDKLEVLDLSNN-QITKLE---GLPGLPRLKTLDLSNNR-ISSISE--GL 83 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS---S--T---T----TT--EEE--SS----S-CH--HH
T ss_pred ccccccccccccccccc-------cchhhhhcCCCEEECCCC-CCcccc---CccChhhhhhcccCCCC-CCcccc--ch
Confidence 45789999999988877 3344 5789999999995 666552 26678999999999997 776621 11
Q ss_pred cCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 233 DQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 233 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
. ..+|+|++|++.+ .++.++..-..-..+++|+.|++.++|
T Consensus 84 ~-----~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 84 D-----KNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp H-----HH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred H-----HhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence 0 1189999999987 566665443333478999999999855
No 32
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.00 E-value=1.2e-05 Score=72.10 Aligned_cols=61 Identities=23% Similarity=0.519 Sum_probs=45.0
Q ss_pred cCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccccccee
Q 021510 153 ALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEI 226 (311)
Q Consensus 153 ~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 226 (311)
.+.+++.|+|++|.++.+. .+| .+|++|.+++|..++.+ |.. + .++|++|++++|.++..+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP---~LP------~sLtsL~Lsnc~nLtsL-P~~-L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP---VLP------NELTEITIENCNNLTTL-PGS-I--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HhcCCCEEEeCCCCCcccC---CCC------CCCcEEEccCCCCcccC-Cch-h--hhhhhheEccCccccccc
Confidence 4688999999999877762 112 37999999999888766 543 2 357999999999767654
No 33
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.94 E-value=4e-07 Score=87.09 Aligned_cols=85 Identities=24% Similarity=0.318 Sum_probs=64.2
Q ss_pred ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccc
Q 021510 152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENR 231 (311)
Q Consensus 152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 231 (311)
..++.|++|++++|+++.+ |..+..+..|+.|...+ +.+... | + +..+++|+.+|++.+. +..+.....
T Consensus 404 ~kle~LeeL~LSGNkL~~L------p~tva~~~~L~tL~ahs-N~l~~f-P-e-~~~l~qL~~lDlS~N~-L~~~~l~~~ 472 (1081)
T KOG0618|consen 404 RKLEELEELNLSGNKLTTL------PDTVANLGRLHTLRAHS-NQLLSF-P-E-LAQLPQLKVLDLSCNN-LSEVTLPEA 472 (1081)
T ss_pred hchHHhHHHhcccchhhhh------hHHHHhhhhhHHHhhcC-Cceeec-h-h-hhhcCcceEEecccch-hhhhhhhhh
Confidence 3478899999999999988 66678888999987766 455544 6 3 6789999999998776 776643322
Q ss_pred ccCcCCcccCCccCeEecccCcc
Q 021510 232 TDQVIPYFVFPQLTTLKLQDLPK 254 (311)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~c~~ 254 (311)
. . -|+|++|++++...
T Consensus 473 ~-p------~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 473 L-P------SPNLKYLDLSGNTR 488 (1081)
T ss_pred C-C------CcccceeeccCCcc
Confidence 2 1 37899999998765
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.91 E-value=6.5e-07 Score=78.15 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=37.5
Q ss_pred cEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecc
Q 021510 11 QSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFS 79 (311)
Q Consensus 11 ~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 79 (311)
.++.|.. +.++.++ ...++.+++||+|++++ .+++.+. +..+..+++|.+|.+.+..+++.++.
T Consensus 70 veirLdq-N~I~~iP--~~aF~~l~~LRrLdLS~-N~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 70 VEIRLDQ-NQISSIP--PGAFKTLHRLRRLDLSK-NNISFIA-PDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred eEEEecc-CCcccCC--hhhccchhhhceecccc-cchhhcC-hHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 3444444 2344432 23456777777777777 3555553 35566677777777766666666653
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=4.5e-07 Score=76.42 Aligned_cols=187 Identities=21% Similarity=0.140 Sum_probs=105.8
Q ss_pred cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510 9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI 88 (311)
Q Consensus 9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 88 (311)
.||+|+|++- +++.- .-..-+..+.+||.|.+.|. .+.+-. ...+..-.+|+.|++++|..+.+... ..
T Consensus 186 Rlq~lDLS~s-~it~s-tl~~iLs~C~kLk~lSlEg~-~LdD~I-~~~iAkN~~L~~lnlsm~sG~t~n~~-------~l 254 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVS-TLHGILSQCSKLKNLSLEGL-RLDDPI-VNTIAKNSNLVRLNLSMCSGFTENAL-------QL 254 (419)
T ss_pred hhHHhhcchh-heeHH-HHHHHHHHHHhhhhcccccc-ccCcHH-HHHHhccccceeeccccccccchhHH-------HH
Confidence 5888888873 34431 00122355678888888885 333311 23344567889999988877655321 11
Q ss_pred ceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee-ec
Q 021510 89 EKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI-NV 167 (311)
Q Consensus 89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l 167 (311)
-...++.|+.|.++.|--.+.. ..... .. --++|+.|++++| +-
T Consensus 255 l~~scs~L~~LNlsWc~l~~~~-Vtv~V-----------------~h-----------------ise~l~~LNlsG~rrn 299 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCFLFTEK-VTVAV-----------------AH-----------------ISETLTQLNLSGYRRN 299 (419)
T ss_pred HHHhhhhHhhcCchHhhccchh-hhHHH-----------------hh-----------------hchhhhhhhhhhhHhh
Confidence 2345677888888777433322 10000 00 1267778888877 21
Q ss_pred eeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeE
Q 021510 168 DQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTL 247 (311)
Q Consensus 168 ~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L 247 (311)
....+ ...-...+++|..|++++|..++.- -+..+..++.|++|.++.|..+.. +.. ..+...|+|..|
T Consensus 300 l~~sh---~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p----~~~---~~l~s~psl~yL 368 (419)
T KOG2120|consen 300 LQKSH---LSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIP----ETL---LELNSKPSLVYL 368 (419)
T ss_pred hhhhH---HHHHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCCh----HHe---eeeccCcceEEE
Confidence 11100 0111345678888888888777753 444466788888888888874421 110 011227788888
Q ss_pred ecccC
Q 021510 248 KLQDL 252 (311)
Q Consensus 248 ~l~~c 252 (311)
++.+|
T Consensus 369 dv~g~ 373 (419)
T KOG2120|consen 369 DVFGC 373 (419)
T ss_pred Eeccc
Confidence 88776
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.69 E-value=7.1e-05 Score=48.69 Aligned_cols=58 Identities=26% Similarity=0.362 Sum_probs=31.5
Q ss_pred cccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccC
Q 021510 185 NLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDL 252 (311)
Q Consensus 185 ~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 252 (311)
+|++|+++++ .++.+ +...+..+++|++|+++++. ++.+.. +. +..+++|++|+++++
T Consensus 2 ~L~~L~l~~n-~l~~i-~~~~f~~l~~L~~L~l~~N~-l~~i~~-~~------f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEI-PPDSFSNLPNLETLDLSNNN-LTSIPP-DA------FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEE-CTTTTTTGTTESEEEETSSS-ESEEET-TT------TTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCcc-CHHHHcCCCCCCEeEccCCc-cCccCH-HH------HcCCCCCCEEeCcCC
Confidence 5666666664 55555 43445666666666666555 555432 11 111666666666554
No 37
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.56 E-value=1.8e-06 Score=80.53 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=24.1
Q ss_pred CCCCccEEEEcCCCCCcccccchhhhccCcccEEEEcc
Q 021510 33 SFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVIN 70 (311)
Q Consensus 33 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 70 (311)
..++|+.|.+.+|..+....-.+....+++|++|++++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 35677777777777666532134556677777777766
No 38
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.53 E-value=3.3e-06 Score=78.72 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=63.9
Q ss_pred CCcccEEeecccccccccccccccccCCCCccEEEEcCC-CCCcccc--cchhhhccCcccEEEEccccccceecccccc
Q 021510 7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNC-DKLSNIF--WFSTTKCLPRLERIAVINCSKMKEIFSIGEE 83 (311)
Q Consensus 7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c-~~l~~~~--~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 83 (311)
.++|++|.+.+|..+..... .......++|+.|++++| ....... .......+++|++|+++.|..+.......
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~-- 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSL-DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA-- 263 (482)
T ss_pred CchhhHhhhcccccCChhhH-HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH--
Confidence 68899999999987776321 233456799999999984 3333221 13455667999999999987654432100
Q ss_pred cccccceeeecccceEecCCCCCcccc
Q 021510 84 VDNAIEKIEFAQLRSLSLGNLPEVTSF 110 (311)
Q Consensus 84 ~~~~~~~~~l~~L~~L~l~~~~~l~~l 110 (311)
....+++|++|.+.+|..+++.
T Consensus 264 -----l~~~c~~L~~L~l~~c~~lt~~ 285 (482)
T KOG1947|consen 264 -----LASRCPNLETLSLSNCSNLTDE 285 (482)
T ss_pred -----HHhhCCCcceEccCCCCccchh
Confidence 1123789999998888876554
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.45 E-value=4.7e-05 Score=64.62 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=66.9
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD 233 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 233 (311)
+|.++.|+++.|.+..+ ..++.+++|+.|++++ +.+..+ .++...+.+.+.|.++.+. ++.+.+ ..
T Consensus 306 ~Pkir~L~lS~N~i~~v-------~nLa~L~~L~~LDLS~-N~Ls~~--~Gwh~KLGNIKtL~La~N~-iE~LSG---L~ 371 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTV-------QNLAELPQLQLLDLSG-NLLAEC--VGWHLKLGNIKTLKLAQNK-IETLSG---LR 371 (490)
T ss_pred ccceeEEeccccceeee-------hhhhhcccceEeeccc-chhHhh--hhhHhhhcCEeeeehhhhh-Hhhhhh---hH
Confidence 57777777777777766 4466777788887777 344433 1234556677777777765 555532 11
Q ss_pred CcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCc
Q 021510 234 QVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKL 281 (311)
Q Consensus 234 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l 281 (311)
. +-+|..|++++ ++++.+.......++|.||.+.+.+.|--
T Consensus 372 K------LYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 372 K------LYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred h------hhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 1 56677777765 34444433333357888998888888743
No 40
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.36 E-value=3.7e-05 Score=74.31 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=7.5
Q ss_pred eeecccceEecCCC
Q 021510 91 IEFAQLRSLSLGNL 104 (311)
Q Consensus 91 ~~l~~L~~L~l~~~ 104 (311)
..||+|..|+|+++
T Consensus 170 ~sFpNL~sLDIS~T 183 (699)
T KOG3665|consen 170 ASFPNLRSLDISGT 183 (699)
T ss_pred hccCccceeecCCC
Confidence 34555555555554
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.32 E-value=0.00022 Score=64.91 Aligned_cols=65 Identities=14% Similarity=0.276 Sum_probs=31.9
Q ss_pred cCCCCccEEEEcCCCCCcccccchhhhccC-cccEEEEccccccceecccccccccccceeeecccceEecCCCCCcccc
Q 021510 32 ESFNQLKNIEAYNCDKLSNIFWFSTTKCLP-RLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSF 110 (311)
Q Consensus 32 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 110 (311)
..++.++.|.+.+ ..+..+ ++...... +|++|++++ ..+..++ ..+..++.|+.|+++++ .+.++
T Consensus 113 ~~~~~l~~L~l~~-n~i~~i--~~~~~~~~~nL~~L~l~~-N~i~~l~---------~~~~~l~~L~~L~l~~N-~l~~l 178 (394)
T COG4886 113 LELTNLTSLDLDN-NNITDI--PPLIGLLKSNLKELDLSD-NKIESLP---------SPLRNLPNLKNLDLSFN-DLSDL 178 (394)
T ss_pred hcccceeEEecCC-cccccC--ccccccchhhcccccccc-cchhhhh---------hhhhccccccccccCCc-hhhhh
Confidence 3345566666654 334444 23333342 666666665 3333332 12345666666666665 34443
No 42
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.22 E-value=8.4e-05 Score=71.86 Aligned_cols=87 Identities=24% Similarity=0.311 Sum_probs=55.2
Q ss_pred cCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccccccee--cccc
Q 021510 153 ALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEI--ISEN 230 (311)
Q Consensus 153 ~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~--~~~~ 230 (311)
++|+|..|+|++++++.+ .+++++++|+.|.+++..--. ..-...+-++++|+.|||+.-.+.... +...
T Consensus 171 sFpNL~sLDIS~TnI~nl-------~GIS~LknLq~L~mrnLe~e~-~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qY 242 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-------SGISRLKNLQVLSMRNLEFES-YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQY 242 (699)
T ss_pred ccCccceeecCCCCccCc-------HHHhccccHHHHhccCCCCCc-hhhHHHHhcccCCCeeeccccccccchHHHHHH
Confidence 479999999999977766 456788888888888753332 112223567889999999876544332 1100
Q ss_pred cccCcCCcccCCccCeEeccc
Q 021510 231 RTDQVIPYFVFPQLTTLKLQD 251 (311)
Q Consensus 231 ~~~~~~~~~~~~~L~~L~l~~ 251 (311)
-.. ...+|+|+.|+.++
T Consensus 243 lec----~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 243 LEC----GMVLPELRFLDCSG 259 (699)
T ss_pred HHh----cccCccccEEecCC
Confidence 000 11288888888774
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.22 E-value=0.00026 Score=64.51 Aligned_cols=88 Identities=18% Similarity=0.261 Sum_probs=59.5
Q ss_pred CCcccEEeecccccccccccccccccCCC-CccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510 7 FPLLQSLILHNLINMERLCIDRLKVESFN-QLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD 85 (311)
Q Consensus 7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 85 (311)
++.++.|++.+. .+.++ .+..+.++ +|+.|++++. .++.+ +..++.+++|+.|.+++++ +..++.
T Consensus 115 ~~~l~~L~l~~n-~i~~i---~~~~~~~~~nL~~L~l~~N-~i~~l--~~~~~~l~~L~~L~l~~N~-l~~l~~------ 180 (394)
T COG4886 115 LTNLTSLDLDNN-NITDI---PPLIGLLKSNLKELDLSDN-KIESL--PSPLRNLPNLKNLDLSFND-LSDLPK------ 180 (394)
T ss_pred ccceeEEecCCc-ccccC---ccccccchhhccccccccc-chhhh--hhhhhccccccccccCCch-hhhhhh------
Confidence 456777777774 35554 33445554 9999999884 55554 3467889999999999864 444442
Q ss_pred cccceeeecccceEecCCCCCcccccc
Q 021510 86 NAIEKIEFAQLRSLSLGNLPEVTSFCC 112 (311)
Q Consensus 86 ~~~~~~~l~~L~~L~l~~~~~l~~l~~ 112 (311)
.....+.|+.|++++. ++..++.
T Consensus 181 ---~~~~~~~L~~L~ls~N-~i~~l~~ 203 (394)
T COG4886 181 ---LLSNLSNLNNLDLSGN-KISDLPP 203 (394)
T ss_pred ---hhhhhhhhhheeccCC-ccccCch
Confidence 1226688899999886 5665554
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.16 E-value=3.8e-05 Score=65.15 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=11.9
Q ss_pred CccCCcccEEeecccc
Q 021510 4 CDAFPLLQSLILHNLI 19 (311)
Q Consensus 4 ~~~l~~L~~L~L~~~~ 19 (311)
...|.+|..+.++.|.
T Consensus 210 l~~f~~l~~~~~s~~~ 225 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALS 225 (490)
T ss_pred hHHhhhhheeeeeccc
Confidence 4567888888888763
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.78 E-value=3.2e-05 Score=70.82 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=15.7
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEec
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWH 193 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~ 193 (311)
.++|..|+.+.|.+..+ |.+++++.+|+.|.+..
T Consensus 165 ~~tl~~ld~s~nei~sl------psql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEIQSL------PSQLGYLTSLRDLNVRR 198 (722)
T ss_pred chhHHHhhhhhhhhhhc------hHHhhhHHHHHHHHHhh
Confidence 34444444444444433 34444444555444444
No 46
>PLN03150 hypothetical protein; Provisional
Probab=96.55 E-value=0.0042 Score=60.05 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=73.6
Q ss_pred ccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcC
Q 021510 157 LEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVI 236 (311)
Q Consensus 157 L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 236 (311)
++.|+++++.+... +|..+..+++|+.|+++++.-...+ |.. +..+++|+.|++++|. +...+. +....
T Consensus 420 v~~L~L~~n~L~g~-----ip~~i~~L~~L~~L~Ls~N~l~g~i-P~~-~~~l~~L~~LdLs~N~-lsg~iP-~~l~~-- 488 (623)
T PLN03150 420 IDGLGLDNQGLRGF-----IPNDISKLRHLQSINLSGNSIRGNI-PPS-LGSITSLEVLDLSYNS-FNGSIP-ESLGQ-- 488 (623)
T ss_pred EEEEECCCCCcccc-----CCHHHhCCCCCCEEECCCCcccCcC-ChH-HhCCCCCCEEECCCCC-CCCCCc-hHHhc--
Confidence 66777777766543 3566778889999999986433333 554 7889999999999887 543321 12222
Q ss_pred CcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccc
Q 021510 237 PYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFA 285 (311)
Q Consensus 237 ~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp 285 (311)
+++|+.|+++++.--..++... ......+..+.+.+++.+...|
T Consensus 489 ----L~~L~~L~Ls~N~l~g~iP~~l-~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 489 ----LTSLRILNLNGNSLSGRVPAAL-GGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ----CCCCCEEECcCCcccccCChHH-hhccccCceEEecCCccccCCC
Confidence 8889999998865444555432 1123456678888777666444
No 47
>PLN03150 hypothetical protein; Provisional
Probab=96.43 E-value=0.0046 Score=59.78 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=42.3
Q ss_pred ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510 152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE 221 (311)
Q Consensus 152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 221 (311)
..+++|+.|++++|++.+. +|..+..+++|+.|+++++.-...+ |.. +.++++|+.|++++|.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~-----iP~~~~~l~~L~~LdLs~N~lsg~i-P~~-l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGN-----IPPSLGSITSLEVLDLSYNSFNGSI-PES-LGQLTSLRILNLNGNS 501 (623)
T ss_pred hCCCCCCEEECCCCcccCc-----CChHHhCCCCCCEEECCCCCCCCCC-chH-HhcCCCCCEEECcCCc
Confidence 3467788888888766532 2555677778888888875333333 544 6778888888888776
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.42 E-value=0.0046 Score=37.10 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=17.2
Q ss_pred CcccEEeecccccccccccccccccCCCCccEEEEcCC
Q 021510 8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNC 45 (311)
Q Consensus 8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c 45 (311)
++|++|+++++ +++++ ++.++.+++|++|+++++
T Consensus 1 ~~L~~L~l~~N-~i~~l---~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDL---PPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSS-S-SSH---GGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCC-CCccc---CchHhCCCCCCEEEecCC
Confidence 35666666664 34443 222456666666666664
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.0019 Score=55.12 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=43.4
Q ss_pred cCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccccccee
Q 021510 153 ALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEI 226 (311)
Q Consensus 153 ~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 226 (311)
-+|++..+-+-.|-+++...+. +...++.+-.|.+.. .++.++.....+..+++|+.|++.+.+-.+.+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek----~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEK----GSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hcccchheeeecCcccchhhcc----cCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 3677777777777444442222 223344555666666 56666666666778999999999988844433
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.00087 Score=57.05 Aligned_cols=68 Identities=15% Similarity=0.262 Sum_probs=30.8
Q ss_pred cCCCccEEEeeeeeceee--eccCCCCCCCCCC-CcccEEEEecCCCCccccchHHHhccCCCcEEEEcccccccee
Q 021510 153 ALPNLEVLEISEINVDQI--WHYNHLPVTFPRF-QNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEI 226 (311)
Q Consensus 153 ~l~~L~~L~l~~~~l~~i--~~~~~~p~~~~~l-~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 226 (311)
.+|.+++|+++.|++..+ -+++. ... +.++.|+.-.|......-.......+|++..+-+..|+ +...
T Consensus 144 ~lP~vtelHmS~N~~rq~n~Dd~c~-----e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~ 214 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQLNLDDNCI-----EDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTE 214 (418)
T ss_pred cchhhhhhhhccchhhhhccccccc-----cccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccch
Confidence 467777777777722211 11110 111 14555555555333222111223345666666666665 4433
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.17 E-value=0.0096 Score=35.72 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=26.9
Q ss_pred CCccEEEEcCCCCCcccccchhhhccCcccEEEEcccccccee
Q 021510 35 NQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEI 77 (311)
Q Consensus 35 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~ 77 (311)
++|++|+++++ +++.+ ++.+.++++|++|+++++. +..+
T Consensus 1 ~~L~~L~l~~N-~i~~l--~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDL--PPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSH--GGHGTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCC-CCccc--CchHhCCCCCCEEEecCCC-CCCC
Confidence 47888888885 66666 3447788888888888863 4444
No 52
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.0013 Score=52.93 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=56.4
Q ss_pred ccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCC
Q 021510 27 DRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPE 106 (311)
Q Consensus 27 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 106 (311)
+...+..++.++.|.+.+|..+.++.....-+..++|++|+|++|+.+++-- -..+..+++|+.|.+.+.+.
T Consensus 117 Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G--------L~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 117 GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG--------LACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH--------HHHHHHhhhhHHHHhcCchh
Confidence 3445577788888999999888876544444567899999999999886532 11345788999999998887
Q ss_pred ccccc
Q 021510 107 VTSFC 111 (311)
Q Consensus 107 l~~l~ 111 (311)
+.+..
T Consensus 189 v~~~e 193 (221)
T KOG3864|consen 189 VANLE 193 (221)
T ss_pred hhchH
Confidence 76654
No 53
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.93 E-value=0.00037 Score=64.14 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=30.2
Q ss_pred cccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCC
Q 021510 28 RLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNL 104 (311)
Q Consensus 28 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 104 (311)
+..++++..|++|+++.. .+..+ |.-+..++ |+.|-+++ .+++.++. +++..+.|.+|+.+.|
T Consensus 114 p~~i~~L~~lt~l~ls~N-qlS~l--p~~lC~lp-Lkvli~sN-Nkl~~lp~---------~ig~~~tl~~ld~s~n 176 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSN-QLSHL--PDGLCDLP-LKVLIVSN-NKLTSLPE---------EIGLLPTLAHLDVSKN 176 (722)
T ss_pred chhhhhhhHHHHhhhccc-hhhcC--ChhhhcCc-ceeEEEec-CccccCCc---------ccccchhHHHhhhhhh
Confidence 444566666666666552 33333 22233332 55555554 34444432 3334455555555544
No 54
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.00087 Score=53.82 Aligned_cols=64 Identities=19% Similarity=0.345 Sum_probs=29.5
Q ss_pred CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEcccc
Q 021510 7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCS 72 (311)
Q Consensus 7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 72 (311)
++.++.|.+.+|..+.+++.+... +-+++|+.|+|++|++++.-. ...+..+++|+.|.+.+.+
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred cchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCch
Confidence 344455555555554444322111 133555555555555555421 2334445555555555443
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.00054 Score=57.75 Aligned_cols=84 Identities=20% Similarity=0.250 Sum_probs=60.0
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD 233 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 233 (311)
++.|+.|.++-|+|+++ ..+..|++|++|++.. +.+.++.....+.++|+|+.|-+..++.-.+.....
T Consensus 40 Mp~lEVLsLSvNkIssL-------~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nY--- 108 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSL-------APLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNY--- 108 (388)
T ss_pred cccceeEEeeccccccc-------hhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcccccchhH---
Confidence 78999999999988876 5667889999999987 566666566678889999999888877443321000
Q ss_pred CcCCcccCCccCeEe
Q 021510 234 QVIPYFVFPQLTTLK 248 (311)
Q Consensus 234 ~~~~~~~~~~L~~L~ 248 (311)
-......+|+|++|+
T Consensus 109 R~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 109 RRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHcccchhcc
Confidence 011223488888886
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.27 E-value=0.0079 Score=50.28 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=74.6
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCC-CC-ccccchHHHhccCCCcEEEEccccccceeccccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCH-KL-KYIFSASMIRSLKQLQRLEICSCEDLQEIISENR 231 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~-~l-~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 231 (311)
+..|+.|.+.++.++++ .++..+++|++|.+++.+ +. ..+ ... +..+|+|+.+.+++++ +..+.....
T Consensus 42 ~~~le~ls~~n~gltt~-------~~~P~Lp~LkkL~lsdn~~~~~~~l-~vl-~e~~P~l~~l~ls~Nk-i~~lstl~p 111 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-------TNFPKLPKLKKLELSDNYRRVSGGL-EVL-AEKAPNLKVLNLSGNK-IKDLSTLRP 111 (260)
T ss_pred ccchhhhhhhccceeec-------ccCCCcchhhhhcccCCcccccccc-eeh-hhhCCceeEEeecCCc-cccccccch
Confidence 56777777888877766 445577789999888752 11 112 222 4567999999999887 554322222
Q ss_pred ccCcCCcccCCccCeEecccCcccccc-cCCCcccCCCcccEEEEecCCCcccccc
Q 021510 232 TDQVIPYFVFPQLTTLKLQDLPKLRCL-YPGMHSSEWPALEILLVYGCDKLKIFAA 286 (311)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~c~~L~~l-~~~~~~~~~~~L~~L~i~~c~~l~~lp~ 286 (311)
. ..+.+|.+|.+.+|+-.+-- +...+...+++|.+|+-.++..-+.-+.
T Consensus 112 l------~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~ 161 (260)
T KOG2739|consen 112 L------KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPEA 161 (260)
T ss_pred h------hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcccccc
Confidence 2 22788889999888765521 1223344678888888877766654443
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.97 E-value=0.00067 Score=64.29 Aligned_cols=111 Identities=15% Similarity=0.078 Sum_probs=67.8
Q ss_pred chhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccCCCCCCCCCCccccccccccc
Q 021510 54 FSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAM 133 (311)
Q Consensus 54 ~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l 133 (311)
...++-++.|+.|+++... +..+. .+..+++|++|+|+.. .++.++.-.
T Consensus 180 D~SLqll~ale~LnLshNk-~~~v~----------~Lr~l~~LkhLDlsyN-~L~~vp~l~------------------- 228 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNK-FTKVD----------NLRRLPKLKHLDLSYN-CLRHVPQLS------------------- 228 (1096)
T ss_pred HHHHHHHHHhhhhccchhh-hhhhH----------HHHhcccccccccccc-hhccccccc-------------------
Confidence 4466778888888888753 32222 4567888999988764 444443210
Q ss_pred ccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCc
Q 021510 134 YCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQ 213 (311)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~ 213 (311)
. . --+|+.|.+++|.++++ .++.++.+|+-|++++. -+........+..+..|+
T Consensus 229 ----------------~-~-gc~L~~L~lrnN~l~tL-------~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~ 282 (1096)
T KOG1859|consen 229 ----------------M-V-GCKLQLLNLRNNALTTL-------RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLI 282 (1096)
T ss_pred ----------------h-h-hhhheeeeecccHHHhh-------hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHH
Confidence 0 0 12377788888866655 45567777888877762 222222333455566777
Q ss_pred EEEEcccc
Q 021510 214 RLEICSCE 221 (311)
Q Consensus 214 ~L~l~~c~ 221 (311)
.|.+.+++
T Consensus 283 ~L~LeGNP 290 (1096)
T KOG1859|consen 283 VLWLEGNP 290 (1096)
T ss_pred HHhhcCCc
Confidence 77777766
No 58
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.82 E-value=0.0063 Score=55.90 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=4.9
Q ss_pred ccCcccEEEEcc
Q 021510 59 CLPRLERIAVIN 70 (311)
Q Consensus 59 ~l~~L~~L~i~~ 70 (311)
.+++|++|++++
T Consensus 116 ~~~~L~~L~ls~ 127 (414)
T KOG0531|consen 116 SLVNLQVLDLSF 127 (414)
T ss_pred hhhcchheeccc
Confidence 344444444433
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.92 E-value=0.0012 Score=55.70 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=57.1
Q ss_pred CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccc
Q 021510 7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDN 86 (311)
Q Consensus 7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 86 (311)
+.+.++|+++||. +.++. -...++.|+.|.++- ++++.+ ..+..|.+|++|++... .+..+..
T Consensus 18 l~~vkKLNcwg~~-L~DIs----ic~kMp~lEVLsLSv-NkIssL---~pl~rCtrLkElYLRkN-~I~sldE------- 80 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDIS----ICEKMPLLEVLSLSV-NKISSL---APLQRCTRLKELYLRKN-CIESLDE------- 80 (388)
T ss_pred HHHhhhhcccCCC-ccHHH----HHHhcccceeEEeec-cccccc---hhHHHHHHHHHHHHHhc-ccccHHH-------
Confidence 5567788888874 66642 235788899998875 566666 44667888888888763 3333321
Q ss_pred ccceeeecccceEecCCCCCcc
Q 021510 87 AIEKIEFAQLRSLSLGNLPEVT 108 (311)
Q Consensus 87 ~~~~~~l~~L~~L~l~~~~~l~ 108 (311)
-..+.++|+|+.|+|...|-..
T Consensus 81 L~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 81 LEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred HHHHhcCchhhhHhhccCCccc
Confidence 1145678899999998866443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.88 E-value=0.13 Score=41.66 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=7.8
Q ss_pred CCCccEEEeeeeeceee
Q 021510 154 LPNLEVLEISEINVDQI 170 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i 170 (311)
++.|.+|.+.+|.|+.|
T Consensus 63 l~rL~tLll~nNrIt~I 79 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRI 79 (233)
T ss_pred ccccceEEecCCcceee
Confidence 34444444444444444
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=93.79 E-value=0.008 Score=52.29 Aligned_cols=119 Identities=23% Similarity=0.184 Sum_probs=65.3
Q ss_pred cCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccc---hHHHhccCCCcEEEEccccccceeccc
Q 021510 153 ALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFS---ASMIRSLKQLQRLEICSCEDLQEIISE 229 (311)
Q Consensus 153 ~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~ 229 (311)
..+.|+++++..+.+..-.. .-+...+.++++|+.|++.+. .++.... ...+..+++|+++++++|- ++.-
T Consensus 183 ~~~~leevr~~qN~I~~eG~-~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcl-l~~~--- 256 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGV-TALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCL-LENE--- 256 (382)
T ss_pred hccccceEEEecccccCchh-HHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccccc-cccc---
Confidence 35788888888874332110 001234677889999999884 3332211 1235567888999999985 3321
Q ss_pred ccccC--cCCcccCCccCeEecccCccccc----ccCCCcccCCCcccEEEEecCCC
Q 021510 230 NRTDQ--VIPYFVFPQLTTLKLQDLPKLRC----LYPGMHSSEWPALEILLVYGCDK 280 (311)
Q Consensus 230 ~~~~~--~~~~~~~~~L~~L~l~~c~~L~~----l~~~~~~~~~~~L~~L~i~~c~~ 280 (311)
+... .......|+|+.|.+.++.-=.+ +.... ..-|.|++|.+.+|.-
T Consensus 257 -Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~--~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 257 -GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACM--AEKPDLEKLNLNGNRL 310 (382)
T ss_pred -cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHH--hcchhhHHhcCCcccc
Confidence 0000 00011278888888877542111 11111 1367788888877654
No 62
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=93.44 E-value=0.0052 Score=53.44 Aligned_cols=233 Identities=15% Similarity=0.087 Sum_probs=117.7
Q ss_pred CCcccEEeecccccccc---cc----cccccccCCCCccEEEEcCCCCCccccc--chhhhccCcccEEEEcccccccee
Q 021510 7 FPLLQSLILHNLINMER---LC----IDRLKVESFNQLKNIEAYNCDKLSNIFW--FSTTKCLPRLERIAVINCSKMKEI 77 (311)
Q Consensus 7 l~~L~~L~L~~~~~l~~---l~----~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~i~~c~~l~~~ 77 (311)
.++|++.+++++.--+- ++ .-...+-..++|++|+++++..-..-.. ...+.++.+|++|.+.+|.--..
T Consensus 57 ~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~- 135 (382)
T KOG1909|consen 57 KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE- 135 (382)
T ss_pred cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChh-
Confidence 45788888888642111 10 0012234456999999998653222111 33566789999999999852211
Q ss_pred ccccccc---c--cccceeeecccceEecCCCCCccccccCCCCCC--CCCCcccccccccccccccccccccccccccc
Q 021510 78 FSIGEEV---D--NAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPS--ASPNRQVSQEESTAMYCSSEITLDISTLLFNE 150 (311)
Q Consensus 78 ~~~~~~~---~--~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 150 (311)
....... + .......-++|+++...+. ++.+.+....... ..+..+. .++....|..... .-+...
T Consensus 136 ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~lee---vr~~qN~I~~eG~---~al~ea 208 (382)
T KOG1909|consen 136 AGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEE---VRLSQNGIRPEGV---TALAEA 208 (382)
T ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccce---EEEecccccCchh---HHHHHH
Confidence 0000000 0 0111234478888888775 4444332111000 0000000 0000011110000 112233
Q ss_pred cccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccc----cchHHHhccCCCcEEEEcccccccee
Q 021510 151 KVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYI----FSASMIRSLKQLQRLEICSCEDLQEI 226 (311)
Q Consensus 151 ~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~----~~~~~~~~l~~L~~L~l~~c~~l~~~ 226 (311)
+..+++|+.|++.+|.++.-... .+...+..|++|+.+++.+|. +..- +....-...|+|+.+.+.+|. ++.-
T Consensus 209 l~~~~~LevLdl~DNtft~egs~-~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~d 285 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSV-ALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE-ITRD 285 (382)
T ss_pred HHhCCcceeeecccchhhhHHHH-HHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch-hHHH
Confidence 45789999999999944322100 012346678899999999993 2222 122223457899999999987 4321
Q ss_pred cccccccCcCCcccCCccCeEecccCc
Q 021510 227 ISENRTDQVIPYFVFPQLTTLKLQDLP 253 (311)
Q Consensus 227 ~~~~~~~~~~~~~~~~~L~~L~l~~c~ 253 (311)
-...- .......|.|+.|.++.|.
T Consensus 286 a~~~l---a~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 286 AALAL---AACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHH---HHHHhcchhhHHhcCCccc
Confidence 00000 0011127889999998864
No 63
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.29 E-value=0.0025 Score=60.54 Aligned_cols=85 Identities=24% Similarity=0.297 Sum_probs=47.6
Q ss_pred ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccc
Q 021510 152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENR 231 (311)
Q Consensus 152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 231 (311)
..+++|+.|+|+.|.+..+.... ...+ +|..|.+++ +.++.+.. +.++.+|+.|+++.+- +.+-.
T Consensus 206 r~l~~LkhLDlsyN~L~~vp~l~-----~~gc-~L~~L~lrn-N~l~tL~g---ie~LksL~~LDlsyNl-l~~hs---- 270 (1096)
T KOG1859|consen 206 RRLPKLKHLDLSYNCLRHVPQLS-----MVGC-KLQLLNLRN-NALTTLRG---IENLKSLYGLDLSYNL-LSEHS---- 270 (1096)
T ss_pred Hhcccccccccccchhccccccc-----hhhh-hheeeeecc-cHHHhhhh---HHhhhhhhccchhHhh-hhcch----
Confidence 44778888888888666652211 1122 377787777 34444422 4567778888888764 32221
Q ss_pred ccCcCCcccCCccCeEecccCc
Q 021510 232 TDQVIPYFVFPQLTTLKLQDLP 253 (311)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~c~ 253 (311)
+-.+.-.+..|+.|++.+.|
T Consensus 271 --eL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 271 --ELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred --hhhHHHHHHHHHHHhhcCCc
Confidence 11112225566677776644
No 64
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.50 E-value=0.092 Score=24.37 Aligned_cols=11 Identities=18% Similarity=0.054 Sum_probs=4.2
Q ss_pred cccEEEEecCC
Q 021510 269 ALEILLVYGCD 279 (311)
Q Consensus 269 ~L~~L~i~~c~ 279 (311)
+|+.|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34444444444
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.11 E-value=0.25 Score=40.06 Aligned_cols=109 Identities=17% Similarity=0.264 Sum_probs=64.8
Q ss_pred CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510 155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ 234 (311)
Q Consensus 155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 234 (311)
.+...+++++|.+..+ ..+..++.|..|.+.+ ++++.+.| ....-++.|..|.+.++. +.++-..+
T Consensus 42 d~~d~iDLtdNdl~~l-------~~lp~l~rL~tLll~n-NrIt~I~p-~L~~~~p~l~~L~LtnNs-i~~l~dl~---- 107 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL-------DNLPHLPRLHTLLLNN-NRITRIDP-DLDTFLPNLKTLILTNNS-IQELGDLD---- 107 (233)
T ss_pred cccceecccccchhhc-------ccCCCccccceEEecC-Ccceeecc-chhhhccccceEEecCcc-hhhhhhcc----
Confidence 4455666777754443 3345667788888877 56776644 334557788888888876 55542222
Q ss_pred cCCcccCCccCeEecccCccccc-ccCCCcccCCCcccEEEEecCC
Q 021510 235 VIPYFVFPQLTTLKLQDLPKLRC-LYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 235 ~~~~~~~~~L~~L~l~~c~~L~~-l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
+...+|+|+.|.+-+.|-=.. -+...+...+|+|+.|++.+-.
T Consensus 108 --pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 108 --PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred --hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 222388888888766443111 1112222467888888887644
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.10 E-value=0.09 Score=44.11 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=30.3
Q ss_pred CCCCccEEEEcCCC--CCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCC
Q 021510 33 SFNQLKNIEAYNCD--KLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLP 105 (311)
Q Consensus 33 ~l~~L~~L~l~~c~--~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 105 (311)
.+++||+|.++... -...+ ......+|+|+++.+++. .+..+.. ......+.+|..|++.+|+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l--~vl~e~~P~l~~l~ls~N-ki~~lst-------l~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGL--EVLAEKAPNLKVLNLSGN-KIKDLST-------LRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccccc--eehhhhCCceeEEeecCC-ccccccc-------cchhhhhcchhhhhcccCC
Confidence 45666777666541 11122 233445577777766663 2221110 0123445556666666663
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.97 E-value=0.15 Score=25.37 Aligned_cols=15 Identities=47% Similarity=0.627 Sum_probs=10.8
Q ss_pred CccEEEeeeeeceee
Q 021510 156 NLEVLEISEINVDQI 170 (311)
Q Consensus 156 ~L~~L~l~~~~l~~i 170 (311)
+|++|++++|+++.+
T Consensus 1 ~L~~Ldls~n~l~~i 15 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSI 15 (22)
T ss_dssp TESEEEETSSEESEE
T ss_pred CccEEECCCCcCEeC
Confidence 467777777777766
No 68
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.66 E-value=0.14 Score=46.95 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=58.4
Q ss_pred CccCCcccEEeeccccccccccccccc-ccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccc
Q 021510 4 CDAFPLLQSLILHNLINMERLCIDRLK-VESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGE 82 (311)
Q Consensus 4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 82 (311)
...|.+|+.|++.+. .++.+ .. ...+++|++|++++ ..++.+ ..+..++.|+.|++.++ .+..+.
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i----~~~l~~~~~L~~L~ls~-N~I~~i---~~l~~l~~L~~L~l~~N-~i~~~~---- 156 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKI----ENLLSSLVNLQVLDLSF-NKITKL---EGLSTLTLLKELNLSGN-LISDIS---- 156 (414)
T ss_pred cccccceeeeecccc-chhhc----ccchhhhhcchheeccc-cccccc---cchhhccchhhheeccC-cchhcc----
Confidence 467888999999984 57764 33 57899999999998 467776 44566777999999885 344433
Q ss_pred ccccccceeeecccceEecCCC
Q 021510 83 EVDNAIEKIEFAQLRSLSLGNL 104 (311)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~l~~~ 104 (311)
+...+++|+.++++++
T Consensus 157 ------~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 157 ------GLESLKSLKLLDLSYN 172 (414)
T ss_pred ------CCccchhhhcccCCcc
Confidence 2334677888887775
No 69
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.28 E-value=0.27 Score=25.53 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=12.4
Q ss_pred CCcccEEEEecCCCcc
Q 021510 267 WPALEILLVYGCDKLK 282 (311)
Q Consensus 267 ~~~L~~L~i~~c~~l~ 282 (311)
|+.|++|++++|++++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4678888888888775
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.18 E-value=2.3 Score=31.48 Aligned_cols=108 Identities=15% Similarity=0.228 Sum_probs=49.8
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD 233 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 233 (311)
+.+|+.+.+.. .+..+.. ..+..+++|+.+.+.. .+..+ +...+.+++.++++.+.+ .+..+.. .
T Consensus 11 ~~~l~~i~~~~-~~~~I~~-----~~F~~~~~l~~i~~~~--~~~~i-~~~~F~~~~~l~~i~~~~--~~~~i~~-~--- 75 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGE-----NAFSNCTSLKSINFPN--NLTSI-GDNAFSNCKSLESITFPN--NLKSIGD-N--- 75 (129)
T ss_dssp -TT--EEEETS-T--EE-T-----TTTTT-TT-SEEEESS--TTSCE--TTTTTT-TT-EEEEETS--TT-EE-T-T---
T ss_pred CCCCCEEEECC-CeeEeCh-----hhcccccccccccccc--ccccc-ceeeeecccccccccccc--ccccccc-c---
Confidence 56778888765 4555522 3456777888888876 35555 334467777888888865 2444421 1
Q ss_pred CcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccc
Q 021510 234 QVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFA 285 (311)
Q Consensus 234 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp 285 (311)
.+..+++|+.+.+.. .++.+..... ..+ .|+.+.+.+ .+..++
T Consensus 76 ---~F~~~~~l~~i~~~~--~~~~i~~~~f-~~~-~l~~i~~~~--~~~~i~ 118 (129)
T PF13306_consen 76 ---AFSNCTNLKNIDIPS--NITEIGSSSF-SNC-NLKEINIPS--NITKIE 118 (129)
T ss_dssp ---TTTT-TTECEEEETT--T-BEEHTTTT-TT--T--EEE-TT--B-SS--
T ss_pred ---cccccccccccccCc--cccEEchhhh-cCC-CceEEEECC--CccEEC
Confidence 122266777777753 3555555442 234 677776643 444443
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=84.28 E-value=0.092 Score=39.95 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=47.5
Q ss_pred CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510 155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ 234 (311)
Q Consensus 155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 234 (311)
.-+..++++.|.+-.+.+- +..+..-..|+..++++ +.+++. |..+...++..+.|++++++ +.+++.. .-.
T Consensus 27 kE~h~ldLssc~lm~i~da---vy~l~~~~el~~i~ls~-N~fk~f-p~kft~kf~t~t~lNl~~ne-isdvPeE--~Aa 98 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADA---VYMLSKGYELTKISLSD-NGFKKF-PKKFTIKFPTATTLNLANNE-ISDVPEE--LAA 98 (177)
T ss_pred HHhhhcccccchhhHHHHH---HHHHhCCceEEEEeccc-chhhhC-CHHHhhccchhhhhhcchhh-hhhchHH--Hhh
Confidence 3455666777744444110 00122234566666776 466655 65555666777778877776 6666532 212
Q ss_pred cCCcccCCccCeEecccC
Q 021510 235 VIPYFVFPQLTTLKLQDL 252 (311)
Q Consensus 235 ~~~~~~~~~L~~L~l~~c 252 (311)
+|.|++|.+...
T Consensus 99 ------m~aLr~lNl~~N 110 (177)
T KOG4579|consen 99 ------MPALRSLNLRFN 110 (177)
T ss_pred ------hHHhhhcccccC
Confidence 777777777764
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=80.94 E-value=8 Score=28.49 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=54.8
Q ss_pred CCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccc
Q 021510 179 TFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCL 258 (311)
Q Consensus 179 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 258 (311)
.+..+++|+.+.+.+ .+..+ +...+..+++|+++.+.+. ++.+.. ..+...++++.+.+.+ .+..+
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I-~~~~F~~~~~l~~i~~~~~--~~~i~~-------~~F~~~~~l~~i~~~~--~~~~i 72 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKI-GENAFSNCTSLKSINFPNN--LTSIGD-------NAFSNCKSLESITFPN--NLKSI 72 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE--TTTTTT-TT-SEEEESST--TSCE-T-------TTTTT-TT-EEEEETS--TT-EE
T ss_pred HHhCCCCCCEEEECC--CeeEe-Chhhccccccccccccccc--ccccce-------eeeecccccccccccc--ccccc
Confidence 356778999998874 45555 4444778889999999873 655521 1122266788888865 55566
Q ss_pred cCCCcccCCCcccEEEEecCCCccccccccccCCCCCccccc
Q 021510 259 YPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIP 300 (311)
Q Consensus 259 ~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~ 300 (311)
.... ...++.|+.+.+.. +++.++...........+.++
T Consensus 73 ~~~~-F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~~ 111 (129)
T PF13306_consen 73 GDNA-FSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINIP 111 (129)
T ss_dssp -TTT-TTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-T
T ss_pred cccc-ccccccccccccCc--cccEEchhhhcCCCceEEEEC
Confidence 5543 23588999998843 566666555544455555444
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=79.59 E-value=0.47 Score=40.42 Aligned_cols=66 Identities=15% Similarity=0.056 Sum_probs=39.5
Q ss_pred CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccc---hHHHhccCCCcEEEEcccc
Q 021510 155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFS---ASMIRSLKQLQRLEICSCE 221 (311)
Q Consensus 155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~ 221 (311)
.+|+++.+..|.|..-...--.--+++++++|+.|++.+. -++...+ ...+..++.|++|.+.+|-
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccchh
Confidence 4788888888854421000000124567789999999984 3332211 2224567789999999994
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=62.75 E-value=5.2 Score=20.38 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=9.7
Q ss_pred CcccEEEEecCCCccccccc
Q 021510 268 PALEILLVYGCDKLKIFAAD 287 (311)
Q Consensus 268 ~~L~~L~i~~c~~l~~lp~~ 287 (311)
++|+.|++.++ +++.+|.+
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 34555555443 55555543
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=62.75 E-value=5.2 Score=20.38 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=9.7
Q ss_pred CcccEEEEecCCCccccccc
Q 021510 268 PALEILLVYGCDKLKIFAAD 287 (311)
Q Consensus 268 ~~L~~L~i~~c~~l~~lp~~ 287 (311)
++|+.|++.++ +++.+|.+
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 34555555443 55555543
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=57.15 E-value=2.3 Score=32.57 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=43.6
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCC-CCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVT-FPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE 221 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~-~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 221 (311)
...|...++++|.+... |+. ...++.++.+++.. +.+.++ |.+ +..++.|+.|+++.++
T Consensus 52 ~~el~~i~ls~N~fk~f------p~kft~kf~t~t~lNl~~-neisdv-PeE-~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKF------PKKFTIKFPTATTLNLAN-NEISDV-PEE-LAAMPALRSLNLRFNP 111 (177)
T ss_pred CceEEEEecccchhhhC------CHHHhhccchhhhhhcch-hhhhhc-hHH-HhhhHHhhhcccccCc
Confidence 45677778888866655 332 44566788888887 577777 766 7789999999999887
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=56.19 E-value=8.5 Score=20.01 Aligned_cols=16 Identities=38% Similarity=0.627 Sum_probs=12.5
Q ss_pred CCccEEEeeeeeceee
Q 021510 155 PNLEVLEISEINVDQI 170 (311)
Q Consensus 155 ~~L~~L~l~~~~l~~i 170 (311)
.+|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5788888888877665
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=49.23 E-value=12 Score=18.58 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=6.2
Q ss_pred CCCcEEEEcccc
Q 021510 210 KQLQRLEICSCE 221 (311)
Q Consensus 210 ~~L~~L~l~~c~ 221 (311)
++|++|++++|+
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 456666666665
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.56 E-value=7.4 Score=36.61 Aligned_cols=94 Identities=15% Similarity=-0.001 Sum_probs=48.2
Q ss_pred CccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccc
Q 021510 4 CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEE 83 (311)
Q Consensus 4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 83 (311)
...+|.+..+.|++. ++..+.....-.+..|+|+.|++++........+...-....-|++|.+.|.+-.+.+.- ..
T Consensus 214 ~~n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~--~s 290 (585)
T KOG3763|consen 214 EENFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSD--RS 290 (585)
T ss_pred hcCCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhh--hH
Confidence 456778888888874 344332111112456889999998862222211111112344678888888765544321 00
Q ss_pred cccccceeeecccceEe
Q 021510 84 VDNAIEKIEFAQLRSLS 100 (311)
Q Consensus 84 ~~~~~~~~~l~~L~~L~ 100 (311)
++.......||+|..|+
T Consensus 291 ~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHhcchheeec
Confidence 00011122578777665
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=30.75 E-value=23 Score=18.45 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=11.5
Q ss_pred CCccEEEeeeeeceee
Q 021510 155 PNLEVLEISEINVDQI 170 (311)
Q Consensus 155 ~~L~~L~l~~~~l~~i 170 (311)
++|++|++++|+++.+
T Consensus 2 ~~L~~L~vs~N~Lt~L 17 (26)
T smart00364 2 PSLKELNVSNNQLTSL 17 (26)
T ss_pred cccceeecCCCccccC
Confidence 4677888888777655
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=21.72 E-value=50 Score=17.17 Aligned_cols=11 Identities=36% Similarity=0.631 Sum_probs=6.2
Q ss_pred CCccEEEeeee
Q 021510 155 PNLEVLEISEI 165 (311)
Q Consensus 155 ~~L~~L~l~~~ 165 (311)
++|++|++++|
T Consensus 2 ~~L~~LdL~~N 12 (28)
T smart00368 2 PSLRELDLSNN 12 (28)
T ss_pred CccCEEECCCC
Confidence 34555666555
Done!