Query 021510
Match_columns 311
No_of_seqs 145 out of 1630
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 05:11:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 1.9E-19 6.5E-24 158.5 16.9 235 6-304 79-313 (328)
2 4fcg_A Uncharacterized protein 99.8 7.2E-18 2.5E-22 148.3 13.9 210 5-277 101-310 (328)
3 4fmz_A Internalin; leucine ric 99.7 3.3E-15 1.1E-19 132.1 16.5 128 152-304 218-345 (347)
4 2id5_A Lingo-1, leucine rich r 99.6 1E-14 3.6E-19 134.5 20.3 159 5-221 29-187 (477)
5 1ogq_A PGIP-2, polygalacturona 99.6 1.1E-15 3.9E-20 133.4 12.6 251 8-303 50-302 (313)
6 3zyi_A Leucine-rich repeat-con 99.6 6.9E-15 2.4E-19 134.9 16.3 231 4-279 71-301 (452)
7 2z66_A Variable lymphocyte rec 99.6 9.3E-15 3.2E-19 127.0 16.0 233 4-279 24-259 (306)
8 1ozn_A Reticulon 4 receptor; N 99.6 5.4E-15 1.9E-19 127.2 14.3 209 6-281 30-238 (285)
9 2xwt_C Thyrotropin receptor; s 99.6 1.4E-14 4.7E-19 121.4 16.2 102 159-280 134-238 (239)
10 3zyj_A Leucine-rich repeat-con 99.6 9.5E-15 3.2E-19 133.5 15.7 232 3-279 59-290 (440)
11 3t6q_A CD180 antigen; protein- 99.6 3.3E-14 1.1E-18 135.0 19.8 138 152-303 397-534 (606)
12 3o53_A Protein LRIM1, AGAP0063 99.6 3.5E-15 1.2E-19 130.5 12.0 82 7-110 33-114 (317)
13 4fmz_A Internalin; leucine ric 99.6 2E-14 6.8E-19 127.0 16.7 107 180-304 217-323 (347)
14 1ogq_A PGIP-2, polygalacturona 99.6 1E-14 3.6E-19 127.3 14.0 226 35-304 50-280 (313)
15 3vq2_A TLR4, TOLL-like recepto 99.6 1E-14 3.5E-19 138.5 14.3 88 5-110 304-391 (606)
16 2id5_A Lingo-1, leucine rich r 99.6 4.9E-14 1.7E-18 130.0 17.9 260 4-303 52-331 (477)
17 3rgz_A Protein brassinosteroid 99.6 8.6E-15 2.9E-19 142.8 13.3 61 241-303 655-715 (768)
18 3oja_A Leucine-rich immune mol 99.6 1.2E-14 4E-19 134.6 13.1 218 6-281 32-250 (487)
19 3rgz_A Protein brassinosteroid 99.6 2E-14 6.9E-19 140.2 15.2 99 178-288 626-724 (768)
20 4eco_A Uncharacterized protein 99.6 2.8E-15 9.7E-20 143.2 8.9 238 28-303 199-468 (636)
21 3v47_A TOLL-like receptor 5B a 99.6 1E-13 3.5E-18 126.9 18.9 111 152-279 296-406 (455)
22 4ecn_A Leucine-rich repeat pro 99.6 1.2E-13 4E-18 135.5 20.2 65 5-72 445-526 (876)
23 2z80_A TOLL-like receptor 2, v 99.6 2.9E-14 1E-18 126.4 14.5 242 4-281 48-314 (353)
24 3zyj_A Leucine-rich repeat-con 99.6 1.2E-13 4E-18 126.2 18.9 243 10-302 45-289 (440)
25 4eco_A Uncharacterized protein 99.6 9E-15 3.1E-19 139.7 11.5 256 4-303 202-499 (636)
26 2z62_A TOLL-like receptor 4, v 99.6 3E-14 1E-18 121.9 13.6 212 8-287 28-249 (276)
27 1xku_A Decorin; proteoglycan, 99.6 1E-13 3.4E-18 121.7 17.3 229 7-285 51-279 (330)
28 3zyi_A Leucine-rich repeat-con 99.6 1.3E-13 4.4E-18 126.4 18.4 242 11-302 57-300 (452)
29 3vq2_A TLR4, TOLL-like recepto 99.6 7.7E-14 2.6E-18 132.4 17.2 253 5-303 282-556 (606)
30 3o6n_A APL1; leucine-rich repe 99.6 1.3E-13 4.5E-18 123.8 17.8 86 5-104 66-151 (390)
31 2xwt_C Thyrotropin receptor; s 99.6 2.2E-14 7.5E-19 120.2 11.7 207 8-255 31-239 (239)
32 4ay9_X Follicle-stimulating ho 99.6 7.6E-14 2.6E-18 123.7 15.8 228 5-277 27-255 (350)
33 3o6n_A APL1; leucine-rich repe 99.6 3.9E-14 1.3E-18 127.3 14.0 91 5-110 90-180 (390)
34 3t6q_A CD180 antigen; protein- 99.6 7.2E-14 2.5E-18 132.6 16.6 257 9-304 255-512 (606)
35 2z80_A TOLL-like receptor 2, v 99.6 4.6E-14 1.6E-18 125.1 13.8 250 9-304 32-313 (353)
36 1p9a_G Platelet glycoprotein I 99.5 1.2E-13 4E-18 119.3 15.7 200 5-279 7-206 (290)
37 2z66_A Variable lymphocyte rec 99.5 2.7E-14 9.2E-19 124.0 11.6 211 5-254 49-260 (306)
38 1h6u_A Internalin H; cell adhe 99.5 2.6E-14 8.8E-19 124.5 11.2 191 5-279 38-228 (308)
39 3oja_B Anopheles plasmodium-re 99.5 2.7E-13 9.3E-18 128.6 17.9 85 6-104 73-157 (597)
40 1ozn_A Reticulon 4 receptor; N 99.5 2.6E-13 9E-18 116.6 16.0 223 11-304 14-237 (285)
41 3rfs_A Internalin B, repeat mo 99.5 3.8E-14 1.3E-18 121.2 10.6 36 32-71 38-73 (272)
42 2o6q_A Variable lymphocyte rec 99.5 3E-13 1E-17 115.4 15.4 201 8-279 16-216 (270)
43 2ast_B S-phase kinase-associat 99.5 4.4E-15 1.5E-19 130.6 3.7 210 8-278 70-282 (336)
44 2ft3_A Biglycan; proteoglycan, 99.5 5.9E-13 2E-17 116.9 17.3 129 155-300 193-328 (332)
45 3v47_A TOLL-like receptor 5B a 99.5 2.9E-13 9.9E-18 123.9 15.5 113 179-304 294-407 (455)
46 1o6v_A Internalin A; bacterial 99.5 2.8E-13 9.6E-18 124.6 15.4 103 181-303 218-320 (466)
47 3bz5_A Internalin-J, INLJ; leu 99.5 1.7E-13 5.7E-18 125.8 13.0 58 4-72 81-138 (457)
48 4ecn_A Leucine-rich repeat pro 99.5 6E-13 2.1E-17 130.4 17.7 135 153-304 695-839 (876)
49 3rfs_A Internalin B, repeat mo 99.5 8.3E-14 2.9E-18 119.0 9.7 206 5-289 38-243 (272)
50 3oja_B Anopheles plasmodium-re 99.5 2.6E-13 8.9E-18 128.7 14.0 92 4-110 95-186 (597)
51 2z63_A TOLL-like receptor 4, v 99.5 4.1E-13 1.4E-17 126.3 15.1 227 9-281 305-531 (570)
52 1xku_A Decorin; proteoglycan, 99.5 1.3E-12 4.5E-17 114.6 17.1 228 5-280 73-305 (330)
53 3bz5_A Internalin-J, INLJ; leu 99.5 5.9E-13 2E-17 122.1 15.1 78 4-104 60-137 (457)
54 1o6v_A Internalin A; bacterial 99.5 9.3E-13 3.2E-17 121.1 16.4 102 153-279 285-386 (466)
55 1p9a_G Platelet glycoprotein I 99.5 7.9E-13 2.7E-17 114.0 14.0 201 31-303 6-206 (290)
56 2z7x_B TOLL-like receptor 1, v 99.5 9.4E-13 3.2E-17 122.6 15.5 67 152-225 321-388 (520)
57 2z81_A CD282 antigen, TOLL-lik 99.4 9.7E-13 3.3E-17 123.3 14.8 62 5-71 23-84 (549)
58 2o6q_A Variable lymphocyte rec 99.4 1.6E-12 5.4E-17 110.9 14.2 181 7-253 36-216 (270)
59 2z63_A TOLL-like receptor 4, v 99.4 8.7E-13 3E-17 124.0 13.6 247 7-304 281-530 (570)
60 3g06_A SSPH2 (leucine-rich rep 99.4 4.2E-12 1.4E-16 120.4 18.2 52 7-71 60-111 (622)
61 2ast_B S-phase kinase-associat 99.4 2.1E-14 7.1E-19 126.3 2.1 217 5-287 90-312 (336)
62 3j0a_A TOLL-like receptor 5; m 99.4 1.1E-11 3.7E-16 122.2 21.5 108 155-279 266-373 (844)
63 3j0a_A TOLL-like receptor 5; m 99.4 8.1E-12 2.8E-16 123.1 20.4 86 6-104 22-107 (844)
64 3o53_A Protein LRIM1, AGAP0063 99.4 1.1E-12 3.6E-17 114.6 12.6 219 32-304 31-249 (317)
65 1ziw_A TOLL-like receptor 3; i 99.4 2.7E-12 9.3E-17 123.4 16.6 39 5-46 326-364 (680)
66 1wwl_A Monocyte differentiatio 99.4 1.6E-13 5.6E-18 119.6 7.1 206 33-304 93-308 (312)
67 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 7E-12 2.4E-16 117.9 17.6 67 152-225 350-417 (562)
68 2z62_A TOLL-like receptor 4, v 99.4 4.5E-12 1.6E-16 108.3 14.0 203 35-304 28-236 (276)
69 3oja_A Leucine-rich immune mol 99.4 2.1E-12 7.3E-17 119.4 12.8 218 33-304 32-249 (487)
70 2ft3_A Biglycan; proteoglycan, 99.4 3.5E-12 1.2E-16 112.0 13.5 228 9-286 34-281 (332)
71 1h6u_A Internalin H; cell adhe 99.4 3.5E-12 1.2E-16 110.9 12.4 169 5-253 60-228 (308)
72 2z7x_B TOLL-like receptor 1, v 99.4 2.3E-12 7.9E-17 120.0 12.0 109 152-281 371-481 (520)
73 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 3.5E-11 1.2E-15 113.1 20.1 68 5-78 49-116 (562)
74 4ay9_X Follicle-stimulating ho 99.4 1.1E-11 3.8E-16 109.7 15.6 192 34-286 29-241 (350)
75 1ziw_A TOLL-like receptor 3; i 99.3 3.4E-11 1.2E-15 115.7 18.6 38 240-279 478-515 (680)
76 1wwl_A Monocyte differentiatio 99.3 2.2E-12 7.5E-17 112.4 9.4 207 6-279 93-307 (312)
77 1h6t_A Internalin B; cell adhe 99.3 2.6E-12 8.9E-17 110.8 8.9 167 6-252 44-210 (291)
78 2z81_A CD282 antigen, TOLL-lik 99.3 1.5E-11 5.1E-16 115.2 14.6 211 5-279 47-262 (549)
79 4glp_A Monocyte differentiatio 99.3 1.4E-12 4.8E-17 113.5 7.0 238 9-304 65-306 (310)
80 1h6t_A Internalin B; cell adhe 99.3 1.3E-12 4.5E-17 112.7 6.0 172 29-279 40-211 (291)
81 1m9s_A Internalin B; cell inva 99.3 4.7E-12 1.6E-16 119.8 9.3 168 5-252 40-207 (605)
82 3m19_A Variable lymphocyte rec 99.3 2.8E-11 9.7E-16 101.9 12.9 176 9-253 15-190 (251)
83 3g06_A SSPH2 (leucine-rich rep 99.3 6.4E-11 2.2E-15 112.3 16.5 232 9-304 41-296 (622)
84 4ezg_A Putative uncharacterize 99.3 7.6E-12 2.6E-16 101.5 8.7 151 32-252 41-191 (197)
85 4glp_A Monocyte differentiatio 99.3 4.7E-12 1.6E-16 110.2 7.3 136 154-303 144-283 (310)
86 4ezg_A Putative uncharacterize 99.3 5.9E-12 2E-16 102.2 7.2 152 58-279 41-192 (197)
87 1jl5_A Outer protein YOPM; leu 99.3 8.2E-11 2.8E-15 107.8 15.5 83 6-111 171-253 (454)
88 1m9s_A Internalin B; cell inva 99.3 2.6E-12 9E-17 121.5 5.1 190 6-279 19-208 (605)
89 3m19_A Variable lymphocyte rec 99.2 5.2E-11 1.8E-15 100.3 11.9 159 5-221 32-190 (251)
90 1jl5_A Outer protein YOPM; leu 99.2 1.8E-10 6.1E-15 105.5 15.2 33 35-71 131-163 (454)
91 3ogk_B Coronatine-insensitive 99.2 5E-13 1.7E-17 126.4 -2.2 118 154-279 402-524 (592)
92 2p1m_B Transport inhibitor res 99.2 2.3E-12 7.7E-17 121.8 2.1 93 6-109 64-170 (594)
93 4g8a_A TOLL-like receptor 4; l 99.2 3.6E-10 1.2E-14 107.2 15.5 111 152-279 466-578 (635)
94 1xeu_A Internalin C; cellular 99.2 1.8E-11 6.3E-16 103.9 5.4 166 6-252 17-182 (263)
95 2p1m_B Transport inhibitor res 99.2 4.2E-12 1.4E-16 120.0 0.9 95 6-108 128-225 (594)
96 2ca6_A RAN GTPase-activating p 99.1 8.2E-12 2.8E-16 111.9 1.5 251 6-279 30-314 (386)
97 4g8a_A TOLL-like receptor 4; l 99.1 3.5E-10 1.2E-14 107.3 12.2 87 152-252 491-577 (635)
98 1xeu_A Internalin C; cellular 99.1 4.8E-10 1.6E-14 95.1 9.4 146 5-221 38-183 (263)
99 3ogk_B Coronatine-insensitive 99.1 5.3E-11 1.8E-15 112.4 3.8 252 7-285 136-423 (592)
100 2o6s_A Variable lymphocyte rec 99.0 5.5E-10 1.9E-14 91.1 8.6 134 33-221 26-159 (208)
101 2v70_A SLIT-2, SLIT homolog 2 99.0 1.3E-09 4.4E-14 89.9 10.5 151 11-221 14-164 (220)
102 3cvr_A Invasion plasmid antige 99.0 1.2E-09 4.1E-14 102.4 11.4 191 9-288 60-250 (571)
103 3e6j_A Variable lymphocyte rec 99.0 1E-09 3.4E-14 91.1 9.7 60 154-221 111-170 (229)
104 1z7x_W Ribonuclease inhibitor; 99.0 5.8E-12 2E-16 115.4 -4.5 89 184-279 199-295 (461)
105 2v9t_B SLIT homolog 2 protein 99.0 3.7E-09 1.3E-13 87.1 12.1 83 154-252 79-162 (220)
106 3goz_A Leucine-rich repeat-con 99.0 4.8E-11 1.6E-15 106.0 0.4 94 8-110 22-124 (362)
107 2ell_A Acidic leucine-rich nuc 99.0 7.8E-10 2.7E-14 87.0 7.0 137 32-226 21-162 (168)
108 2ell_A Acidic leucine-rich nuc 99.0 6.2E-10 2.1E-14 87.6 6.4 134 4-196 20-159 (168)
109 2o6s_A Variable lymphocyte rec 99.0 1.2E-09 4E-14 89.1 8.2 160 60-289 27-186 (208)
110 2xot_A Amphoterin-induced prot 99.0 2.3E-09 7.8E-14 95.2 10.7 136 35-226 39-178 (361)
111 2v9t_B SLIT homolog 2 protein 99.0 3.5E-09 1.2E-13 87.2 10.3 150 11-221 14-163 (220)
112 3cvr_A Invasion plasmid antige 98.9 3.9E-09 1.3E-13 99.0 11.5 160 4-254 76-242 (571)
113 3e6j_A Variable lymphocyte rec 98.9 5.4E-09 1.8E-13 86.7 11.1 150 37-253 21-170 (229)
114 2xot_A Amphoterin-induced prot 98.9 3.1E-09 1E-13 94.3 9.7 163 4-221 35-200 (361)
115 2v70_A SLIT-2, SLIT homolog 2 98.9 1.7E-08 5.8E-13 83.1 13.1 109 154-279 56-164 (220)
116 1dce_A Protein (RAB geranylger 98.9 2.9E-11 1E-15 113.6 -4.8 58 154-221 462-519 (567)
117 2je0_A Acidic leucine-rich nuc 98.9 6.9E-10 2.4E-14 85.5 2.9 61 154-219 87-149 (149)
118 1z7x_W Ribonuclease inhibitor; 98.9 6.8E-11 2.3E-15 108.2 -3.8 66 5-72 110-181 (461)
119 2ca6_A RAN GTPase-activating p 98.9 1.1E-09 3.7E-14 98.1 3.8 226 5-253 57-314 (386)
120 3sb4_A Hypothetical leucine ri 98.8 4.7E-08 1.6E-12 85.5 13.3 103 154-275 225-328 (329)
121 3goz_A Leucine-rich repeat-con 98.8 2.3E-10 8E-15 101.6 -1.5 223 6-279 48-295 (362)
122 2je0_A Acidic leucine-rich nuc 98.8 6.9E-09 2.4E-13 79.8 6.3 106 154-276 41-148 (149)
123 1a9n_A U2A', U2A'; complex (nu 98.8 1.1E-08 3.9E-13 81.0 7.0 109 155-280 42-152 (176)
124 1a9n_A U2A', U2A'; complex (nu 98.8 9.4E-09 3.2E-13 81.5 6.1 134 31-221 15-151 (176)
125 3e4g_A ATP synthase subunit S, 98.6 1.5E-08 5E-13 79.8 3.7 90 9-110 62-155 (176)
126 1dce_A Protein (RAB geranylger 98.6 5.1E-10 1.7E-14 105.2 -5.9 107 155-285 441-549 (567)
127 1w8a_A SLIT protein; signaling 98.6 1.9E-07 6.5E-12 75.0 9.9 78 11-104 11-88 (192)
128 2wfh_A SLIT homolog 2 protein 98.6 1.7E-07 5.7E-12 75.5 8.9 107 155-279 31-137 (193)
129 2o6r_A Variable lymphocyte rec 98.6 4.1E-07 1.4E-11 71.9 10.4 110 154-280 27-136 (177)
130 2wfh_A SLIT homolog 2 protein 98.6 2E-07 6.8E-12 75.0 8.3 33 35-70 31-63 (193)
131 1w8a_A SLIT protein; signaling 98.5 5.4E-07 1.9E-11 72.3 10.0 108 155-279 29-137 (192)
132 2o6r_A Variable lymphocyte rec 98.5 6.1E-07 2.1E-11 70.9 9.1 61 154-221 75-135 (177)
133 3e4g_A ATP synthase subunit S, 98.4 1.6E-07 5.3E-12 73.9 4.7 89 156-257 62-154 (176)
134 4b8c_D Glucose-repressible alc 98.4 8.9E-08 3E-12 92.6 3.4 59 154-221 269-327 (727)
135 1ds9_A Outer arm dynein; leuci 98.4 5.9E-09 2E-13 84.3 -5.0 59 155-221 93-151 (198)
136 3sb4_A Hypothetical leucine ri 98.4 3.1E-06 1E-10 73.8 11.3 66 152-227 247-313 (329)
137 4fdw_A Leucine rich hypothetic 98.3 6.1E-05 2.1E-09 67.5 18.0 216 9-278 136-355 (401)
138 1ds9_A Outer arm dynein; leuci 98.3 3E-08 1E-12 80.1 -3.6 104 154-274 69-180 (198)
139 4fdw_A Leucine rich hypothetic 98.2 6.3E-05 2.2E-09 67.4 17.0 237 8-304 113-357 (401)
140 4b8c_D Glucose-repressible alc 98.2 8.7E-07 3E-11 85.7 4.4 114 152-286 221-334 (727)
141 3g39_A Variable lymphocyte rec 98.2 5.6E-06 1.9E-10 65.0 8.0 83 155-252 30-112 (170)
142 3g39_A Variable lymphocyte rec 98.1 5.2E-06 1.8E-10 65.1 7.4 104 156-279 10-113 (170)
143 2r9u_A Variable lymphocyte rec 98.1 7.8E-06 2.7E-10 64.4 8.1 84 155-253 33-116 (174)
144 2r9u_A Variable lymphocyte rec 98.1 6.6E-06 2.2E-10 64.9 7.6 102 158-279 15-116 (174)
145 2ra8_A Uncharacterized protein 97.9 9.4E-06 3.2E-10 71.7 5.1 66 182-252 250-317 (362)
146 2ifg_A High affinity nerve gro 97.9 2.4E-05 8.2E-10 68.5 7.5 67 152-226 28-95 (347)
147 3un9_A NLR family member X1; l 97.8 2.8E-07 9.6E-12 82.0 -6.1 93 154-252 154-249 (372)
148 2ifg_A High affinity nerve gro 97.8 5.9E-05 2E-09 66.0 7.7 83 13-110 13-95 (347)
149 2ra8_A Uncharacterized protein 97.8 1E-05 3.5E-10 71.5 2.8 175 5-224 136-320 (362)
150 3un9_A NLR family member X1; l 97.5 3.4E-06 1.2E-10 75.0 -3.7 13 209-221 238-250 (372)
151 4fs7_A Uncharacterized protein 97.1 0.023 7.9E-07 50.4 15.9 82 180-276 293-374 (394)
152 3rw6_A Nuclear RNA export fact 96.6 0.00094 3.2E-08 56.1 2.6 63 6-73 168-232 (267)
153 4fs7_A Uncharacterized protein 96.5 0.072 2.5E-06 47.1 14.8 33 240-275 318-350 (394)
154 4gt6_A Cell surface protein; l 96.4 0.25 8.5E-06 43.6 17.8 83 180-277 284-366 (394)
155 3rw6_A Nuclear RNA export fact 95.9 0.0018 6.2E-08 54.4 0.7 64 153-221 168-231 (267)
156 1io0_A Tropomodulin; LRR prote 95.5 0.0007 2.4E-08 53.6 -3.1 66 154-221 92-162 (185)
157 4h09_A Hypothetical leucine ri 95.0 0.17 5.7E-06 44.4 10.6 58 153-218 284-341 (379)
158 1io0_A Tropomodulin; LRR prote 94.2 0.0014 4.8E-08 51.9 -4.5 125 31-194 32-161 (185)
159 4gt6_A Cell surface protein; l 92.3 0.43 1.5E-05 42.0 8.1 80 154-251 287-366 (394)
160 4h09_A Hypothetical leucine ri 90.3 2 6.8E-05 37.3 10.3 82 180-275 259-340 (379)
161 3rfe_A Platelet glycoprotein I 80.3 1.2 4.2E-05 32.4 3.1 35 185-221 32-66 (130)
162 3rfe_A Platelet glycoprotein I 73.9 3.6 0.00012 29.8 4.1 36 210-253 31-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 41.5 3.2 0.00011 32.7 -1.4 66 154-220 97-167 (197)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.9e-19 Score=158.46 Aligned_cols=235 Identities=20% Similarity=0.274 Sum_probs=181.6
Q ss_pred cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510 6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD 85 (311)
Q Consensus 6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 85 (311)
.++++++|+++++. ++.+ +..++.+++|++|+++++. ++.+ +..++.+++|++|+++++. +..++.
T Consensus 79 ~~~~l~~L~L~~n~-l~~l---p~~l~~l~~L~~L~L~~n~-l~~l--p~~~~~l~~L~~L~Ls~n~-l~~lp~------ 144 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LPQF---PDQAFRLSHLQHMTIDAAG-LMEL--PDTMQQFAGLETLTLARNP-LRALPA------ 144 (328)
T ss_dssp TSTTCCEEEEESSC-CSSC---CSCGGGGTTCSEEEEESSC-CCCC--CSCGGGGTTCSEEEEESCC-CCCCCG------
T ss_pred cccceeEEEccCCC-chhc---ChhhhhCCCCCEEECCCCC-ccch--hHHHhccCCCCEEECCCCc-cccCcH------
Confidence 45889999999964 6665 4556889999999999974 5554 5667899999999999974 445542
Q ss_pred cccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee
Q 021510 86 NAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI 165 (311)
Q Consensus 86 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (311)
.+..+++|++|++++|..++.++..... ......+..+++|++|++++|
T Consensus 145 ---~l~~l~~L~~L~L~~n~~~~~~p~~~~~----------------------------~~~~~~~~~l~~L~~L~L~~n 193 (328)
T 4fcg_A 145 ---SIASLNRLRELSIRACPELTELPEPLAS----------------------------TDASGEHQGLVNLQSLRLEWT 193 (328)
T ss_dssp ---GGGGCTTCCEEEEEEETTCCCCCSCSEE----------------------------EC-CCCEEESTTCCEEEEEEE
T ss_pred ---HHhcCcCCCEEECCCCCCccccChhHhh----------------------------ccchhhhccCCCCCEEECcCC
Confidence 4567899999999998777665542110 000112344899999999999
Q ss_pred eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccC
Q 021510 166 NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLT 245 (311)
Q Consensus 166 ~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~ 245 (311)
+++.+ |..+..+++|++|+++++ .+..+ +.. +..+++|++|++++|.....++. ... .+++|+
T Consensus 194 ~l~~l------p~~l~~l~~L~~L~L~~N-~l~~l-~~~-l~~l~~L~~L~Ls~n~~~~~~p~--~~~------~l~~L~ 256 (328)
T 4fcg_A 194 GIRSL------PASIANLQNLKSLKIRNS-PLSAL-GPA-IHHLPKLEELDLRGCTALRNYPP--IFG------GRAPLK 256 (328)
T ss_dssp CCCCC------CGGGGGCTTCCEEEEESS-CCCCC-CGG-GGGCTTCCEEECTTCTTCCBCCC--CTT------CCCCCC
T ss_pred CcCcc------hHhhcCCCCCCEEEccCC-CCCcC-chh-hccCCCCCEEECcCCcchhhhHH--Hhc------CCCCCC
Confidence 88765 666788999999999996 45555 444 78899999999999985555432 222 289999
Q ss_pred eEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCccccccccc
Q 021510 246 TLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL 304 (311)
Q Consensus 246 ~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~ 304 (311)
.|++++|..++.++... ..+++|++|++++|+.++.+|..+........+.+|.+.+
T Consensus 257 ~L~L~~n~~~~~~p~~~--~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDI--HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EEECTTCTTCCBCCTTG--GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EEECCCCCchhhcchhh--hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 99999999999888765 6799999999999999999999999888888888876554
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=7.2e-18 Score=148.33 Aligned_cols=210 Identities=20% Similarity=0.255 Sum_probs=160.4
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
..+++|++|+++++. ++.+ +..++.+++|++|+++++ .++.+ +..+..+++|++|++++|..++.++..-...
T Consensus 101 ~~l~~L~~L~L~~n~-l~~l---p~~~~~l~~L~~L~Ls~n-~l~~l--p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~ 173 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAG-LMEL---PDTMQQFAGLETLTLARN-PLRAL--PASIASLNRLRELSIRACPELTELPEPLAST 173 (328)
T ss_dssp GGGTTCSEEEEESSC-CCCC---CSCGGGGTTCSEEEEESC-CCCCC--CGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred hhCCCCCEEECCCCC-ccch---hHHHhccCCCCEEECCCC-ccccC--cHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence 447899999999964 5555 455689999999999997 45555 5678899999999999998887776422211
Q ss_pred ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE 164 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (311)
.....+..+++|++|+++++ .++.++. .+..+++|++|++++
T Consensus 174 ~~~~~~~~l~~L~~L~L~~n-~l~~lp~-------------------------------------~l~~l~~L~~L~L~~ 215 (328)
T 4fcg_A 174 DASGEHQGLVNLQSLRLEWT-GIRSLPA-------------------------------------SIANLQNLKSLKIRN 215 (328)
T ss_dssp C-CCCEEESTTCCEEEEEEE-CCCCCCG-------------------------------------GGGGCTTCCEEEEES
T ss_pred cchhhhccCCCCCEEECcCC-CcCcchH-------------------------------------hhcCCCCCCEEEccC
Confidence 11223456899999999887 4544332 123479999999999
Q ss_pred eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510 165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL 244 (311)
Q Consensus 165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 244 (311)
|+++.+ |..+..+++|++|++++|.....+ |.. +..+++|++|++++|.....++. .. ..+++|
T Consensus 216 N~l~~l------~~~l~~l~~L~~L~Ls~n~~~~~~-p~~-~~~l~~L~~L~L~~n~~~~~~p~--~~------~~l~~L 279 (328)
T 4fcg_A 216 SPLSAL------GPAIHHLPKLEELDLRGCTALRNY-PPI-FGGRAPLKRLILKDCSNLLTLPL--DI------HRLTQL 279 (328)
T ss_dssp SCCCCC------CGGGGGCTTCCEEECTTCTTCCBC-CCC-TTCCCCCCEEECTTCTTCCBCCT--TG------GGCTTC
T ss_pred CCCCcC------chhhccCCCCCEEECcCCcchhhh-HHH-hcCCCCCCEEECCCCCchhhcch--hh------hcCCCC
Confidence 988866 556778999999999998777765 544 78899999999999986665532 22 228999
Q ss_pred CeEecccCcccccccCCCcccCCCcccEEEEec
Q 021510 245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYG 277 (311)
Q Consensus 245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~ 277 (311)
+.|++++|+.++.+|... ..+++|+.+++..
T Consensus 280 ~~L~L~~n~~~~~iP~~l--~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPSLI--AQLPANCIILVPP 310 (328)
T ss_dssp CEEECTTCTTCCCCCGGG--GGSCTTCEEECCG
T ss_pred CEEeCCCCCchhhccHHH--hhccCceEEeCCH
Confidence 999999999999998766 6788888887753
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.65 E-value=3.3e-15 Score=132.08 Aligned_cols=128 Identities=17% Similarity=0.222 Sum_probs=75.1
Q ss_pred ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccc
Q 021510 152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENR 231 (311)
Q Consensus 152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 231 (311)
..+++|++|++++|+++.+ +. +..+++|+.|+++++ .+..+ + .+..+++|++|++++|. ++.+..
T Consensus 218 ~~~~~L~~L~l~~n~l~~~------~~-~~~l~~L~~L~l~~n-~l~~~-~--~~~~l~~L~~L~l~~n~-l~~~~~--- 282 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKITDL------SP-LANLSQLTWLEIGTN-QISDI-N--AVKDLTKLKMLNVGSNQ-ISDISV--- 282 (347)
T ss_dssp GGCTTCCEEECCSSCCCCC------GG-GTTCTTCCEEECCSS-CCCCC-G--GGTTCTTCCEEECCSSC-CCCCGG---
T ss_pred hcCCcCCEEEccCCccCCC------cc-hhcCCCCCEEECCCC-ccCCC-h--hHhcCCCcCEEEccCCc-cCCChh---
Confidence 3456677777777655544 11 556677777777775 34433 2 25667777777777775 554421
Q ss_pred ccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCccccccccc
Q 021510 232 TDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL 304 (311)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~ 304 (311)
+..+++|+.|++++|. ++...... ...+++|++|++++|+ ++.++. +........+.+..+.|
T Consensus 283 ------~~~l~~L~~L~L~~n~-l~~~~~~~-l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 283 ------LNNLSQLNSLFLNNNQ-LGNEDMEV-IGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp ------GGGCTTCSEEECCSSC-CCGGGHHH-HHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC--
T ss_pred ------hcCCCCCCEEECcCCc-CCCcChhH-hhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhcc
Confidence 1227788888888764 33332211 1357888888888886 444433 44455566666666554
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.65 E-value=1e-14 Score=134.46 Aligned_cols=159 Identities=18% Similarity=0.155 Sum_probs=93.5
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
.-.+++++|+++++ +++.+. ...+..+++|++|+++++ .++.+. +..+..+++|++|+++++. +..++.
T Consensus 29 ~~~~~l~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~----- 97 (477)
T 2id5_A 29 GIPTETRLLDLGKN-RIKTLN--QDEFASFPHLEELELNEN-IVSAVE-PGAFNNLFNLRTLGLRSNR-LKLIPL----- 97 (477)
T ss_dssp CCCTTCSEEECCSS-CCCEEC--TTTTTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSC-CCSCCT-----
T ss_pred CCCCCCcEEECCCC-ccceEC--HhHccCCCCCCEEECCCC-ccCEeC-hhhhhCCccCCEEECCCCc-CCccCc-----
Confidence 34467888888885 366642 345677888999998886 455542 3566788888999888853 444442
Q ss_pred ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE 164 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (311)
..+..+++|++|+++++ .+..+... .+..+++|++|++++
T Consensus 98 ---~~~~~l~~L~~L~Ls~n-~i~~~~~~------------------------------------~~~~l~~L~~L~l~~ 137 (477)
T 2id5_A 98 ---GVFTGLSNLTKLDISEN-KIVILLDY------------------------------------MFQDLYNLKSLEVGD 137 (477)
T ss_dssp ---TSSTTCTTCCEEECTTS-CCCEECTT------------------------------------TTTTCTTCCEEEECC
T ss_pred ---ccccCCCCCCEEECCCC-ccccCChh------------------------------------HccccccCCEEECCC
Confidence 12346788888888876 34333221 112245666666666
Q ss_pred eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510 165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE 221 (311)
Q Consensus 165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 221 (311)
|.++.+. +..+..+++|+.|++.++ .+..+ +...+..+++|++|+++++.
T Consensus 138 n~l~~~~-----~~~~~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 138 NDLVYIS-----HRAFSGLNSLEQLTLEKC-NLTSI-PTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp TTCCEEC-----TTSSTTCTTCCEEEEESC-CCSSC-CHHHHTTCTTCCEEEEESCC
T ss_pred CccceeC-----hhhccCCCCCCEEECCCC-cCccc-ChhHhcccCCCcEEeCCCCc
Confidence 6555441 233455556666666654 33333 33335555566666665554
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.64 E-value=1.1e-15 Score=133.36 Aligned_cols=251 Identities=12% Similarity=0.046 Sum_probs=143.3
Q ss_pred CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510 8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA 87 (311)
Q Consensus 8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 87 (311)
.++++|+++++. +.+....+..++.+++|++|+++++.++.... +..+..+++|++|+++++.....++.
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~-------- 119 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHTNVSGAIPD-------- 119 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEECCEEECCG--------
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccC-ChhHhcCCCCCEEECcCCeeCCcCCH--------
Confidence 578899998864 44311124567888999999998655665433 45678889999999988754334432
Q ss_pred cceeeecccceEecCCCCCcc-ccccCCCCCCCCCCcccccccccccccccccccccccccccccccCC-CccEEEeeee
Q 021510 88 IEKIEFAQLRSLSLGNLPEVT-SFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALP-NLEVLEISEI 165 (311)
Q Consensus 88 ~~~~~l~~L~~L~l~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~ 165 (311)
.+..+++|++|+++++ .++ .++.... ....+..+.+.. ..+.. .....+..++ +|++|++++|
T Consensus 120 -~~~~l~~L~~L~Ls~N-~l~~~~p~~~~--------~l~~L~~L~L~~---N~l~~--~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 120 -FLSQIKTLVTLDFSYN-ALSGTLPPSIS--------SLPNLVGITFDG---NRISG--AIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp -GGGGCTTCCEEECCSS-EEESCCCGGGG--------GCTTCCEEECCS---SCCEE--ECCGGGGCCCTTCCEEECCSS
T ss_pred -HHhCCCCCCEEeCCCC-ccCCcCChHHh--------cCCCCCeEECcC---CcccC--cCCHHHhhhhhcCcEEECcCC
Confidence 3456788888888876 233 2221100 001111111111 11110 0112233455 7788888888
Q ss_pred eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccC
Q 021510 166 NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLT 245 (311)
Q Consensus 166 ~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~ 245 (311)
+++.. .|..+..++ |+.|+++++ .+....+ ..+..+++|++|+++++. ++..+.. . ..+++|+
T Consensus 185 ~l~~~-----~~~~~~~l~-L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~--~------~~l~~L~ 247 (313)
T 1ogq_A 185 RLTGK-----IPPTFANLN-LAFVDLSRN-MLEGDAS-VLFGSDKNTQKIHLAKNS-LAFDLGK--V------GLSKNLN 247 (313)
T ss_dssp EEEEE-----CCGGGGGCC-CSEEECCSS-EEEECCG-GGCCTTSCCSEEECCSSE-ECCBGGG--C------CCCTTCC
T ss_pred eeecc-----CChHHhCCc-ccEEECcCC-cccCcCC-HHHhcCCCCCEEECCCCc-eeeecCc--c------cccCCCC
Confidence 66643 134455555 888888775 3343323 336677888888888876 4433221 1 1277888
Q ss_pred eEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCcccccccc
Q 021510 246 TLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQ 303 (311)
Q Consensus 246 ~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~ 303 (311)
+|+++++.--..++... ..+++|++|+++++.--..+|.. ........+.+..+.
T Consensus 248 ~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 248 GLDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEECCSSCCEECCCGGG--GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred EEECcCCcccCcCChHH--hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 88888764333444333 46778888888887544466653 333344455555443
No 6
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.63 E-value=6.9e-15 Score=134.86 Aligned_cols=231 Identities=15% Similarity=0.081 Sum_probs=154.5
Q ss_pred CccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccc
Q 021510 4 CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEE 83 (311)
Q Consensus 4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 83 (311)
.+-.+++++|+|+++ +++.+. +..++.+++|++|+++++ .++.+. +..+..+++|++|+++++. +..++.
T Consensus 71 ~~~~~~l~~L~L~~n-~i~~~~--~~~~~~l~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~---- 140 (452)
T 3zyi_A 71 QGIPSNTRYLNLMEN-NIQMIQ--ADTFRHLHHLEVLQLGRN-SIRQIE-VGAFNGLASLNTLELFDNW-LTVIPS---- 140 (452)
T ss_dssp SCCCTTCSEEECCSS-CCCEEC--TTTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSC-CSBCCT----
T ss_pred CCCCCCccEEECcCC-cCceEC--HHHcCCCCCCCEEECCCC-ccCCcC-hhhccCcccCCEEECCCCc-CCccCh----
Confidence 334468999999996 466642 345678999999999986 555542 3567789999999999864 555442
Q ss_pred cccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEee
Q 021510 84 VDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEIS 163 (311)
Q Consensus 84 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (311)
..+..+++|++|+++++ .++.++..... ....+..+.+......... + ...+..+++|++|+++
T Consensus 141 ----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-------~l~~L~~L~l~~~~~l~~i---~-~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 141 ----GAFEYLSKLRELWLRNN-PIESIPSYAFN-------RVPSLMRLDLGELKKLEYI---S-EGAFEGLFNLKYLNLG 204 (452)
T ss_dssp ----TTSSSCTTCCEEECCSC-CCCEECTTTTT-------TCTTCCEEECCCCTTCCEE---C-TTTTTTCTTCCEEECT
T ss_pred ----hhhcccCCCCEEECCCC-CcceeCHhHHh-------cCCcccEEeCCCCCCcccc---C-hhhccCCCCCCEEECC
Confidence 23456889999999887 45555432211 1111222222221100000 0 1123457899999999
Q ss_pred eeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCc
Q 021510 164 EINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQ 243 (311)
Q Consensus 164 ~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 243 (311)
+|+++.+ +.+..+++|+.|+++++ .+..+.+ ..+..+++|++|+++++. +..+... . +..+++
T Consensus 205 ~n~l~~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~-~------~~~l~~ 267 (452)
T 3zyi_A 205 MCNIKDM-------PNLTPLVGLEELEMSGN-HFPEIRP-GSFHGLSSLKKLWVMNSQ-VSLIERN-A------FDGLAS 267 (452)
T ss_dssp TSCCSSC-------CCCTTCTTCCEEECTTS-CCSEECG-GGGTTCTTCCEEECTTSC-CCEECTT-T------TTTCTT
T ss_pred CCccccc-------ccccccccccEEECcCC-cCcccCc-ccccCccCCCEEEeCCCc-CceECHH-H------hcCCCC
Confidence 9988766 24678889999999996 5555534 347889999999999997 6665321 1 222899
Q ss_pred cCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 244 LTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 244 L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
|+.|+++++ +++.++.... ..+++|++|++.++|
T Consensus 268 L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 268 LVELNLAHN-NLSSLPHDLF-TPLRYLVELHLHHNP 301 (452)
T ss_dssp CCEEECCSS-CCSCCCTTSS-TTCTTCCEEECCSSC
T ss_pred CCEEECCCC-cCCccChHHh-ccccCCCEEEccCCC
Confidence 999999986 6777765542 368899999999876
No 7
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.62 E-value=9.3e-15 Score=126.96 Aligned_cols=233 Identities=16% Similarity=0.117 Sum_probs=141.2
Q ss_pred CccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccc-cchhhhccCcccEEEEccccccceeccccc
Q 021510 4 CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIF-WFSTTKCLPRLERIAVINCSKMKEIFSIGE 82 (311)
Q Consensus 4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 82 (311)
....++|++|+++++. ++.+. ...++.+++|++|+++++ .++... .+.....+++|++|+++++. +..++.
T Consensus 24 ~~~~~~l~~L~L~~n~-l~~i~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~--- 95 (306)
T 2z66_A 24 TGIPSSATRLELESNK-LQSLP--HGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSS--- 95 (306)
T ss_dssp SCCCTTCCEEECCSSC-CCCCC--TTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEE---
T ss_pred CCCCCCCCEEECCCCc-cCccC--HhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCc-cccChh---
Confidence 3445789999999964 66642 123578899999999986 444331 13445578999999999874 444442
Q ss_pred ccccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEe
Q 021510 83 EVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEI 162 (311)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 162 (311)
.+..+++|++|+++++ .++.++..... .....+..+.+... .+... ....+..+++|++|++
T Consensus 96 ------~~~~l~~L~~L~l~~n-~l~~~~~~~~~------~~l~~L~~L~l~~n---~l~~~--~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 96 ------NFLGLEQLEHLDFQHS-NLKQMSEFSVF------LSLRNLIYLDISHT---HTRVA--FNGIFNGLSSLEVLKM 157 (306)
T ss_dssp ------EEETCTTCCEEECTTS-EEESSTTTTTT------TTCTTCCEEECTTS---CCEEC--STTTTTTCTTCCEEEC
T ss_pred ------hcCCCCCCCEEECCCC-cccccccchhh------hhccCCCEEECCCC---cCCcc--chhhcccCcCCCEEEC
Confidence 3567899999999886 34443320000 01111122222211 11100 1112345788888888
Q ss_pred eeeecee-eeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccC
Q 021510 163 SEINVDQ-IWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVF 241 (311)
Q Consensus 163 ~~~~l~~-i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 241 (311)
++|.+.. . .|..+..+++|++|+++++ .+....+ ..+..+++|++|++++|. ++.+... . +..+
T Consensus 158 ~~n~l~~~~-----~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~-~------~~~l 222 (306)
T 2z66_A 158 AGNSFQENF-----LPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMSHNN-FFSLDTF-P------YKCL 222 (306)
T ss_dssp TTCEEGGGE-----ECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTSC-CSBCCSG-G------GTTC
T ss_pred CCCcccccc-----chhHHhhCcCCCEEECCCC-CcCCcCH-HHhcCCCCCCEEECCCCc-cCccChh-h------ccCc
Confidence 8886654 1 1456677888888888886 4554523 336778888888888886 5554321 1 1227
Q ss_pred CccCeEecccCcccccccCCCcccCC-CcccEEEEecCC
Q 021510 242 PQLTTLKLQDLPKLRCLYPGMHSSEW-PALEILLVYGCD 279 (311)
Q Consensus 242 ~~L~~L~l~~c~~L~~l~~~~~~~~~-~~L~~L~i~~c~ 279 (311)
++|+.|+++++. ++....... ..+ ++|++|++.+++
T Consensus 223 ~~L~~L~L~~N~-l~~~~~~~~-~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 223 NSLQVLDYSLNH-IMTSKKQEL-QHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTCCEEECTTSC-CCBCSSSSC-CCCCTTCCEEECTTCC
T ss_pred ccCCEeECCCCC-CcccCHHHH-HhhhccCCEEEccCCC
Confidence 888888888864 444333221 345 478888888866
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.62 E-value=5.4e-15 Score=127.18 Aligned_cols=209 Identities=17% Similarity=0.153 Sum_probs=133.9
Q ss_pred cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510 6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD 85 (311)
Q Consensus 6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 85 (311)
..++|++|+++++. ++.+. ...++.+++|++|+++++ .++.+. +..+..+++|++|+++++..+..+..
T Consensus 30 ~~~~l~~L~l~~n~-i~~~~--~~~~~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~------ 98 (285)
T 1ozn_A 30 IPAASQRIFLHGNR-ISHVP--AASFRACRNLTILWLHSN-VLARID-AAAFTGLALLEQLDLSDNAQLRSVDP------ 98 (285)
T ss_dssp CCTTCSEEECTTSC-CCEEC--TTTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCT------
T ss_pred CCCCceEEEeeCCc-CCccC--HHHcccCCCCCEEECCCC-ccceeC-HhhcCCccCCCEEeCCCCCCccccCH------
Confidence 44677777777743 55532 223567777888888775 444432 34556677788888777654555431
Q ss_pred cccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee
Q 021510 86 NAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI 165 (311)
Q Consensus 86 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (311)
..+..+++|++|+++++ .++.+.. ..+..+++|++|++++|
T Consensus 99 --~~~~~l~~L~~L~l~~n-~l~~~~~------------------------------------~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 99 --ATFHGLGRLHTLHLDRC-GLQELGP------------------------------------GLFRGLAALQYLYLQDN 139 (285)
T ss_dssp --TTTTTCTTCCEEECTTS-CCCCCCT------------------------------------TTTTTCTTCCEEECCSS
T ss_pred --HHhcCCcCCCEEECCCC-cCCEECH------------------------------------hHhhCCcCCCEEECCCC
Confidence 12345677777777776 2333211 11234788999999998
Q ss_pred eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccC
Q 021510 166 NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLT 245 (311)
Q Consensus 166 ~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~ 245 (311)
+++.+ .+..+..+++|++|+++++ .++.+ +...+..+++|++|+++++. +..+... .. ..+++|+
T Consensus 140 ~l~~~-----~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~------~~l~~L~ 204 (285)
T 1ozn_A 140 ALQAL-----PDDTFRDLGNLTHLFLHGN-RISSV-PERAFRGLHSLDRLLLHQNR-VAHVHPH-AF------RDLGRLM 204 (285)
T ss_dssp CCCCC-----CTTTTTTCTTCCEEECCSS-CCCEE-CTTTTTTCTTCCEEECCSSC-CCEECTT-TT------TTCTTCC
T ss_pred ccccc-----CHhHhccCCCccEEECCCC-ccccc-CHHHhcCccccCEEECCCCc-ccccCHh-Hc------cCccccc
Confidence 77765 1234677889999999885 55555 44446778899999999887 6655321 11 2278899
Q ss_pred eEecccCcccccccCCCcccCCCcccEEEEecCCCc
Q 021510 246 TLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKL 281 (311)
Q Consensus 246 ~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l 281 (311)
.|+++++ +++.++... ...+++|++|++.+++-.
T Consensus 205 ~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 205 TLYLFAN-NLSALPTEA-LAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EEECCSS-CCSCCCHHH-HTTCTTCCEEECCSSCEE
T ss_pred EeeCCCC-cCCcCCHHH-cccCcccCEEeccCCCcc
Confidence 9999885 555554321 136788999999887643
No 9
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=1.4e-14 Score=121.42 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=47.4
Q ss_pred EEEeeee-eceeeeccCCCCCCCCCCCccc-EEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcC
Q 021510 159 VLEISEI-NVDQIWHYNHLPVTFPRFQNLT-RLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVI 236 (311)
Q Consensus 159 ~L~l~~~-~l~~i~~~~~~p~~~~~l~~L~-~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 236 (311)
+|++++| +++.+. +..+..+++|+ .|+++++ .++.+ +...+.. ++|++|++++|+.++.+... ..
T Consensus 134 ~L~l~~N~~l~~i~-----~~~~~~l~~L~~~L~l~~n-~l~~i-~~~~~~~-~~L~~L~L~~n~~l~~i~~~-~~---- 200 (239)
T 2xwt_C 134 ILEITDNPYMTSIP-----VNAFQGLCNETLTLKLYNN-GFTSV-QGYAFNG-TKLDAVYLNKNKYLTVIDKD-AF---- 200 (239)
T ss_dssp EEEEESCTTCCEEC-----TTTTTTTBSSEEEEECCSC-CCCEE-CTTTTTT-CEEEEEECTTCTTCCEECTT-TT----
T ss_pred EEECCCCcchhhcC-----cccccchhcceeEEEcCCC-CCccc-CHhhcCC-CCCCEEEcCCCCCcccCCHH-Hh----
Confidence 6666665 555551 12244555566 6665553 33333 3222222 45666666655435444211 11
Q ss_pred CcccC-CccCeEecccCcccccccCCCcccCCCcccEEEEecCCC
Q 021510 237 PYFVF-PQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDK 280 (311)
Q Consensus 237 ~~~~~-~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~ 280 (311)
..+ ++|+.|++++ ..++.++.. .+++|+.|++.++++
T Consensus 201 --~~l~~~L~~L~l~~-N~l~~l~~~----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 201 --GGVYSGPSLLDVSQ-TSVTALPSK----GLEHLKELIARNTWT 238 (239)
T ss_dssp --TTCSBCCSEEECTT-CCCCCCCCT----TCTTCSEEECTTC--
T ss_pred --hccccCCcEEECCC-CccccCChh----HhccCceeeccCccC
Confidence 114 5566666655 344444432 355566666555543
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.61 E-value=9.5e-15 Score=133.48 Aligned_cols=232 Identities=15% Similarity=0.122 Sum_probs=155.1
Q ss_pred CCccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccc
Q 021510 3 GCDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGE 82 (311)
Q Consensus 3 ~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 82 (311)
+.+-.++++.|+|+++. ++.+. ...++.+++|++|+++++ .++.+. +..+..+++|++|+++++ .+..++.
T Consensus 59 P~~~~~~l~~L~L~~n~-i~~~~--~~~~~~l~~L~~L~Ls~n-~i~~i~-~~~~~~l~~L~~L~L~~n-~l~~~~~--- 129 (440)
T 3zyj_A 59 PDGISTNTRLLNLHENQ-IQIIK--VNSFKHLRHLEILQLSRN-HIRTIE-IGAFNGLANLNTLELFDN-RLTTIPN--- 129 (440)
T ss_dssp CSCCCTTCSEEECCSCC-CCEEC--TTTTSSCSSCCEEECCSS-CCCEEC-GGGGTTCSSCCEEECCSS-CCSSCCT---
T ss_pred CCCCCCCCcEEEccCCc-CCeeC--HHHhhCCCCCCEEECCCC-cCCccC-hhhccCCccCCEEECCCC-cCCeeCH---
Confidence 34455789999999964 66642 345688999999999986 455542 456778999999999986 4555442
Q ss_pred ccccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEe
Q 021510 83 EVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEI 162 (311)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 162 (311)
..+..+++|++|+++++ .++.++..... ....+..+.+......... + ...+..+++|++|++
T Consensus 130 -----~~~~~l~~L~~L~L~~N-~i~~~~~~~~~-------~l~~L~~L~l~~~~~l~~i---~-~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 130 -----GAFVYLSKLKELWLRNN-PIESIPSYAFN-------RIPSLRRLDLGELKRLSYI---S-EGAFEGLSNLRYLNL 192 (440)
T ss_dssp -----TTSCSCSSCCEEECCSC-CCCEECTTTTT-------TCTTCCEEECCCCTTCCEE---C-TTTTTTCSSCCEEEC
T ss_pred -----hHhhccccCceeeCCCC-cccccCHHHhh-------hCcccCEeCCCCCCCccee---C-cchhhcccccCeecC
Confidence 23457789999999887 45555432211 1111222222221100000 0 112345789999999
Q ss_pred eeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCC
Q 021510 163 SEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFP 242 (311)
Q Consensus 163 ~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 242 (311)
++|+++.+ +.+..+++|+.|+++++ .+..+.+ ..+..+++|++|+++++. ++.+... . +..++
T Consensus 193 ~~n~l~~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~-~------~~~l~ 255 (440)
T 3zyj_A 193 AMCNLREI-------PNLTPLIKLDELDLSGN-HLSAIRP-GSFQGLMHLQKLWMIQSQ-IQVIERN-A------FDNLQ 255 (440)
T ss_dssp TTSCCSSC-------CCCTTCSSCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTCC-CCEECTT-S------STTCT
T ss_pred CCCcCccc-------cccCCCcccCEEECCCC-ccCccCh-hhhccCccCCEEECCCCc-eeEEChh-h------hcCCC
Confidence 99988766 24678889999999996 5665634 347889999999999987 7766421 1 22389
Q ss_pred ccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 243 QLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 243 ~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
+|+.|+++++ +++.++.... ..+++|+.|++.++|
T Consensus 256 ~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 256 SLVEINLAHN-NLTLLPHDLF-TPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCEEECTTS-CCCCCCTTTT-SSCTTCCEEECCSSC
T ss_pred CCCEEECCCC-CCCccChhHh-ccccCCCEEEcCCCC
Confidence 9999999985 6777765442 368899999998876
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.61 E-value=3.3e-14 Score=134.95 Aligned_cols=138 Identities=14% Similarity=0.100 Sum_probs=74.5
Q ss_pred ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccc
Q 021510 152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENR 231 (311)
Q Consensus 152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 231 (311)
..+++|++|++++|++.... .+..+..+++|+.|++++|. +....+ ..+..+++|++|++++|. +......
T Consensus 397 ~~l~~L~~L~l~~n~l~~~~----~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~-- 467 (606)
T 3t6q_A 397 KECPQLELLDLAFTRLKVKD----AQSPFQNLHLLKVLNLSHSL-LDISSE-QLFDGLPALQHLNLQGNH-FPKGNIQ-- 467 (606)
T ss_dssp TTCTTCSEEECTTCCEECCT----TCCTTTTCTTCCEEECTTCC-CBTTCT-TTTTTCTTCCEEECTTCB-CGGGEEC--
T ss_pred cCCccCCeEECCCCcCCCcc----cchhhhCcccCCEEECCCCc-cCCcCH-HHHhCCCCCCEEECCCCC-CCccccc--
Confidence 34567777777777555431 11235667777777777753 333323 235667777777777776 4321100
Q ss_pred ccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCcccccccc
Q 021510 232 TDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQ 303 (311)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~ 303 (311)
....+..+++|+.|++++| +++.+..... ..+++|++|++++|.--...|..+...... .+.+..++
T Consensus 468 --~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 468 --KTNSLQTLGRLEILVLSFC-DLSSIDQHAF-TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp --SSCGGGGCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred --cchhhccCCCccEEECCCC-ccCccChhhh-ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 0011223777778877776 3444432221 356777888877775444444444444444 45444444
No 12
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=3.5e-15 Score=130.49 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=50.3
Q ss_pred CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccc
Q 021510 7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDN 86 (311)
Q Consensus 7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 86 (311)
+++|++|+++++ +++.+. +..++.+++|++|+++++. +.... + +..+++|++|+++++. +..++
T Consensus 33 ~~~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~-------- 96 (317)
T 3o53_A 33 AWNVKELDLSGN-PLSQIS--AADLAPFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNNY-VQELL-------- 96 (317)
T ss_dssp GGGCSEEECTTS-CCCCCC--HHHHTTCTTCCEEECTTSC-CEEEE--E-ETTCTTCCEEECCSSE-EEEEE--------
T ss_pred CCCCCEEECcCC-ccCcCC--HHHhhCCCcCCEEECCCCc-CCcch--h-hhhcCCCCEEECcCCc-ccccc--------
Confidence 457888888875 355531 2345677888888887753 44431 2 6677788888887753 33322
Q ss_pred ccceeeecccceEecCCCCCcccc
Q 021510 87 AIEKIEFAQLRSLSLGNLPEVTSF 110 (311)
Q Consensus 87 ~~~~~~l~~L~~L~l~~~~~l~~l 110 (311)
..++|++|+++++ .++.+
T Consensus 97 -----~~~~L~~L~l~~n-~l~~~ 114 (317)
T 3o53_A 97 -----VGPSIETLHAANN-NISRV 114 (317)
T ss_dssp -----ECTTCCEEECCSS-CCSEE
T ss_pred -----CCCCcCEEECCCC-ccCCc
Confidence 3467777777775 34443
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.61 E-value=2e-14 Score=127.02 Aligned_cols=107 Identities=15% Similarity=0.140 Sum_probs=66.6
Q ss_pred CCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCccccccc
Q 021510 180 FPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLY 259 (311)
Q Consensus 180 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 259 (311)
+..+++|++|++++| .+... +. +..+++|++|++++|. ++.+. . +..+++|+.|++++| .++.++
T Consensus 217 ~~~~~~L~~L~l~~n-~l~~~-~~--~~~l~~L~~L~l~~n~-l~~~~---~------~~~l~~L~~L~l~~n-~l~~~~ 281 (347)
T 4fmz_A 217 VANMTRLNSLKIGNN-KITDL-SP--LANLSQLTWLEIGTNQ-ISDIN---A------VKDLTKLKMLNVGSN-QISDIS 281 (347)
T ss_dssp GGGCTTCCEEECCSS-CCCCC-GG--GTTCTTCCEEECCSSC-CCCCG---G------GTTCTTCCEEECCSS-CCCCCG
T ss_pred hhcCCcCCEEEccCC-ccCCC-cc--hhcCCCCCEEECCCCc-cCCCh---h------HhcCCCcCEEEccCC-ccCCCh
Confidence 445667777777775 33433 21 5667777777777775 55441 1 122788888888886 555553
Q ss_pred CCCcccCCCcccEEEEecCCCccccccccccCCCCCccccccccc
Q 021510 260 PGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL 304 (311)
Q Consensus 260 ~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~ 304 (311)
. ...+++|++|++++|.--...+..+........+.+..+.+
T Consensus 282 ~---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 282 V---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp G---GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred h---hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 2 24678899999998864444444455555566666655543
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.60 E-value=1e-14 Score=127.25 Aligned_cols=226 Identities=15% Similarity=0.083 Sum_probs=145.3
Q ss_pred CCccEEEEcCCCCCc--ccccchhhhccCcccEEEEccccccc-eecccccccccccceeeecccceEecCCCCCcc-cc
Q 021510 35 NQLKNIEAYNCDKLS--NIFWFSTTKCLPRLERIAVINCSKMK-EIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVT-SF 110 (311)
Q Consensus 35 ~~L~~L~l~~c~~l~--~~~~~~~~~~l~~L~~L~i~~c~~l~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~l 110 (311)
.+++.|+++++.--. .+ +..+..+++|++|+++++..+. .++ ..+..+++|++|+++++. ++ .+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~--~~~l~~l~~L~~L~L~~~n~l~~~~p---------~~l~~l~~L~~L~Ls~n~-l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPI--PSSLANLPYLNFLYIGGINNLVGPIP---------PAIAKLTQLHYLYITHTN-VSGAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEEC--CGGGGGCTTCSEEEEEEETTEESCCC---------GGGGGCTTCSEEEEEEEC-CEEEC
T ss_pred ceEEEEECCCCCccCCccc--ChhHhCCCCCCeeeCCCCCcccccCC---------hhHhcCCCCCEEECcCCe-eCCcC
Confidence 689999999975432 23 5678899999999999755554 333 245678999999999873 43 33
Q ss_pred ccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCC-cccEE
Q 021510 111 CCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQ-NLTRL 189 (311)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~-~L~~L 189 (311)
+.... ....+..+.+. ...+.. .....+..+++|++|++++|.++.. .|..+..++ +|++|
T Consensus 118 p~~~~--------~l~~L~~L~Ls---~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~-----~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 118 PDFLS--------QIKTLVTLDFS---YNALSG--TLPPSISSLPNLVGITFDGNRISGA-----IPDSYGSFSKLFTSM 179 (313)
T ss_dssp CGGGG--------GCTTCCEEECC---SSEEES--CCCGGGGGCTTCCEEECCSSCCEEE-----CCGGGGCCCTTCCEE
T ss_pred CHHHh--------CCCCCCEEeCC---CCccCC--cCChHHhcCCCCCeEECcCCcccCc-----CCHHHhhhhhcCcEE
Confidence 32110 11111222222 111111 1112345578889999988877743 255566776 88999
Q ss_pred EEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCc
Q 021510 190 IVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPA 269 (311)
Q Consensus 190 ~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~ 269 (311)
+++++. +....+.. +..++ |++|++++|. ++.... .. +..+++|+.|+++++.--...+. . ..+++
T Consensus 180 ~L~~N~-l~~~~~~~-~~~l~-L~~L~Ls~N~-l~~~~~-~~------~~~l~~L~~L~L~~N~l~~~~~~-~--~~l~~ 245 (313)
T 1ogq_A 180 TISRNR-LTGKIPPT-FANLN-LAFVDLSRNM-LEGDAS-VL------FGSDKNTQKIHLAKNSLAFDLGK-V--GLSKN 245 (313)
T ss_dssp ECCSSE-EEEECCGG-GGGCC-CSEEECCSSE-EEECCG-GG------CCTTSCCSEEECCSSEECCBGGG-C--CCCTT
T ss_pred ECcCCe-eeccCChH-HhCCc-ccEEECcCCc-ccCcCC-HH------HhcCCCCCEEECCCCceeeecCc-c--cccCC
Confidence 888863 33332443 56665 9999998886 554432 11 12289999999998644323322 2 46799
Q ss_pred ccEEEEecCCCccccccccccCCCCCccccccccc
Q 021510 270 LEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL 304 (311)
Q Consensus 270 L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~ 304 (311)
|++|++++|.--..+|..+........+.+..+++
T Consensus 246 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred CCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 99999999876658888888777788888877764
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.59 E-value=1e-14 Score=138.45 Aligned_cols=88 Identities=14% Similarity=0.077 Sum_probs=54.0
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
..+++|++|+++++. +..+ +.+ .+++|++|+++++..+... ....+++|++|+++++. +..+...
T Consensus 304 ~~~~~L~~L~l~~n~-l~~l----p~~-~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~-l~~~~~~---- 368 (606)
T 3vq2_A 304 PKHFKWQSLSIIRCQ-LKQF----PTL-DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRNA-LSFSGCC---- 368 (606)
T ss_dssp CTTCCCSEEEEESCC-CSSC----CCC-CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSSC-EEEEEEC----
T ss_pred cccccCCEEEccccc-Cccc----ccC-CCCccceeeccCCcCccch----hhccCCCCCEEECcCCc-cCCCcch----
Confidence 456788899999875 4554 234 7888888888887555433 34567888888888763 2222100
Q ss_pred ccccceeeecccceEecCCCCCcccc
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSF 110 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l 110 (311)
...+..+++|++|+++++. ++.+
T Consensus 369 --~~~~~~~~~L~~L~L~~n~-l~~~ 391 (606)
T 3vq2_A 369 --SYSDLGTNSLRHLDLSFNG-AIIM 391 (606)
T ss_dssp --CHHHHCCSCCCEEECCSCS-EEEE
T ss_pred --hhhhccCCcccEeECCCCc-cccc
Confidence 0123456677777777663 4443
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.59 E-value=4.9e-14 Score=129.96 Aligned_cols=260 Identities=17% Similarity=0.212 Sum_probs=138.9
Q ss_pred CccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccc
Q 021510 4 CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEE 83 (311)
Q Consensus 4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 83 (311)
...+++|++|+|+++ .++.+ .+..++.+++|++|+++++ .++.+ ++..+..+++|++|+++++. +..+..
T Consensus 52 ~~~l~~L~~L~L~~n-~i~~~--~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-i~~~~~---- 121 (477)
T 2id5_A 52 FASFPHLEELELNEN-IVSAV--EPGAFNNLFNLRTLGLRSN-RLKLI-PLGVFTGLSNLTKLDISENK-IVILLD---- 121 (477)
T ss_dssp TTTCTTCCEEECTTS-CCCEE--CTTTTTTCTTCCEEECCSS-CCCSC-CTTSSTTCTTCCEEECTTSC-CCEECT----
T ss_pred ccCCCCCCEEECCCC-ccCEe--ChhhhhCCccCCEEECCCC-cCCcc-CcccccCCCCCCEEECCCCc-cccCCh----
Confidence 345789999999986 46553 2345678899999999886 45554 23456788999999998864 333321
Q ss_pred cccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEee
Q 021510 84 VDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEIS 163 (311)
Q Consensus 84 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (311)
..+..+++|++|+++++ .++.+...... ....+..+.+... .+..-. ...+..+++|+.|+++
T Consensus 122 ----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-------~l~~L~~L~l~~n---~l~~~~--~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 122 ----YMFQDLYNLKSLEVGDN-DLVYISHRAFS-------GLNSLEQLTLEKC---NLTSIP--TEALSHLHGLIVLRLR 184 (477)
T ss_dssp ----TTTTTCTTCCEEEECCT-TCCEECTTSST-------TCTTCCEEEEESC---CCSSCC--HHHHTTCTTCCEEEEE
T ss_pred ----hHccccccCCEEECCCC-ccceeChhhcc-------CCCCCCEEECCCC---cCcccC--hhHhcccCCCcEEeCC
Confidence 12345677777777765 33333221111 0001111111110 000000 0011234455555555
Q ss_pred eeeceeeeccCC-------------------CCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccc
Q 021510 164 EINVDQIWHYNH-------------------LPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQ 224 (311)
Q Consensus 164 ~~~l~~i~~~~~-------------------~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 224 (311)
+|.+..+..... .|.......+|++|+++++ .++.+ +...+..+++|++|+++++. ++
T Consensus 185 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~ 261 (477)
T 2id5_A 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAV-PYLAVRHLVYLRFLNLSYNP-IS 261 (477)
T ss_dssp SCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSC-CHHHHTTCTTCCEEECCSSC-CC
T ss_pred CCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-ccccc-CHHHhcCccccCeeECCCCc-CC
Confidence 544443311000 0222222335556666554 34444 43446677777888877776 55
Q ss_pred eecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCcccccccc-ccCCCCCcccccccc
Q 021510 225 EIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADL-SQNNENDQLGIPAQQ 303 (311)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~-~~~~~~~~~~~~~~~ 303 (311)
.+... .+..+++|+.|+++++ +++.+.... ...+++|++|+++++ +++.++... ........+.+..+.
T Consensus 262 ~~~~~-------~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 262 TIEGS-------MLHELLRLQEIQLVGG-QLAVVEPYA-FRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EECTT-------SCTTCTTCCEEECCSS-CCSEECTTT-BTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ccChh-------hccccccCCEEECCCC-ccceECHHH-hcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 55321 1122778888888875 455553332 146788899988887 566666443 333445555555554
No 17
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.58 E-value=8.6e-15 Score=142.81 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=33.9
Q ss_pred CCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCcccccccc
Q 021510 241 FPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQ 303 (311)
Q Consensus 241 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~ 303 (311)
+++|+.|+++++.--..+|... ..+++|++|+++++.--..+|..+........+.++.++
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l--~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEV--GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred cccCCEEeCcCCccCCCCChHH--hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 5555555555543333444333 345666666666665555666666666666666665554
No 18
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=1.2e-14 Score=134.60 Aligned_cols=218 Identities=13% Similarity=0.114 Sum_probs=120.2
Q ss_pred cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510 6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD 85 (311)
Q Consensus 6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 85 (311)
.+++|++|+|+++ .+..+. +..++.+++|++|++++|. +.... + +..+++|++|++++| .+..++
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~--~~~~~~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~Ls~N-~l~~l~------- 96 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQIS--AADLAPFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNN-YVQELL------- 96 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCC--GGGGTTCTTCCEEECTTSC-CEEEE--E-CTTCTTCCEEECCSS-EEEEEE-------
T ss_pred cCCCccEEEeeCC-cCCCCC--HHHHhCCCCCCEEEeeCCC-CCCCc--c-cccCCCCCEEEecCC-cCCCCC-------
Confidence 4568999999986 465531 2456788999999998864 54442 2 678899999999886 344433
Q ss_pred cccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee
Q 021510 86 NAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI 165 (311)
Q Consensus 86 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (311)
..++|++|+++++ .++.++.... ..+..+.+.. +.+.... ...+..+++|+.|++++|
T Consensus 97 ------~~~~L~~L~L~~N-~l~~~~~~~l----------~~L~~L~L~~---N~l~~~~--~~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 97 ------VGPSIETLHAANN-NISRVSCSRG----------QGKKNIYLAN---NKITMLR--DLDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp ------ECTTCCEEECCSS-CCCCEEECCC----------SSCEEEECCS---SCCCSGG--GBCGGGGSSEEEEECTTS
T ss_pred ------CCCCcCEEECcCC-cCCCCCcccc----------CCCCEEECCC---CCCCCCC--chhhcCCCCCCEEECCCC
Confidence 3378888888886 4444433110 0011111111 0110000 011233566666666666
Q ss_pred eceeeeccCCCCCCCC-CCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510 166 NVDQIWHYNHLPVTFP-RFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL 244 (311)
Q Consensus 166 ~l~~i~~~~~~p~~~~-~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 244 (311)
.++.+. |..+. .+++|+.|+++++ .+... +. ...+++|++|++++|. ++.++.. . ..+++|
T Consensus 155 ~l~~~~-----~~~l~~~l~~L~~L~Ls~N-~l~~~-~~--~~~l~~L~~L~Ls~N~-l~~~~~~--~------~~l~~L 216 (487)
T 3oja_A 155 EIDTVN-----FAELAASSDTLEHLNLQYN-FIYDV-KG--QVVFAKLKTLDLSSNK-LAFMGPE--F------QSAAGV 216 (487)
T ss_dssp CCCEEE-----GGGGGGGTTTCCEEECTTS-CCCEE-EC--CCCCTTCCEEECCSSC-CCEECGG--G------GGGTTC
T ss_pred CCCCcC-----hHHHhhhCCcccEEecCCC-ccccc-cc--cccCCCCCEEECCCCC-CCCCCHh--H------cCCCCc
Confidence 555541 22222 4566666666664 33333 21 2246666667766665 5554321 1 126667
Q ss_pred CeEecccCcccccccCCCcccCCCcccEEEEecCCCc
Q 021510 245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKL 281 (311)
Q Consensus 245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l 281 (311)
+.|+++++ .++.++... ..+++|+.|++.+++-.
T Consensus 217 ~~L~Ls~N-~l~~lp~~l--~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 217 TWISLRNN-KLVLIEKAL--RFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SEEECTTS-CCCEECTTC--CCCTTCCEEECTTCCBC
T ss_pred cEEEecCC-cCcccchhh--ccCCCCCEEEcCCCCCc
Confidence 77777663 455555443 34566777777666544
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.58 E-value=2e-14 Score=140.20 Aligned_cols=99 Identities=16% Similarity=0.039 Sum_probs=71.5
Q ss_pred CCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCccccc
Q 021510 178 VTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRC 257 (311)
Q Consensus 178 ~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 257 (311)
..+..+++|+.|+++++.-...+ |.. ++.+++|+.|+++++. ++..+. +... .+++|+.|+++++.--..
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~i-p~~-l~~l~~L~~L~Ls~N~-l~g~ip-~~l~------~L~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYI-PKE-IGSMPYLFILNLGHND-ISGSIP-DEVG------DLRGLNILDLSSNKLDGR 695 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCC-CGG-GGGCTTCCEEECCSSC-CCSCCC-GGGG------GCTTCCEEECCSSCCEEC
T ss_pred hhhhccccccEEECcCCcccccC-CHH-HhccccCCEEeCcCCc-cCCCCC-hHHh------CCCCCCEEECCCCcccCc
Confidence 34556788999999986433333 655 7889999999999997 553332 1222 289999999999765556
Q ss_pred ccCCCcccCCCcccEEEEecCCCcccccccc
Q 021510 258 LYPGMHSSEWPALEILLVYGCDKLKIFAADL 288 (311)
Q Consensus 258 l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~ 288 (311)
+|... ..+++|++|++++++--..+|..+
T Consensus 696 ip~~l--~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 696 IPQAM--SALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp CCGGG--GGCCCCSEEECCSSEEEEECCSSS
T ss_pred CChHH--hCCCCCCEEECcCCcccccCCCch
Confidence 66554 578999999999987777788653
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.58 E-value=2.8e-15 Score=143.18 Aligned_cols=238 Identities=11% Similarity=0.086 Sum_probs=148.3
Q ss_pred cccccCCCCccEEEEcCCCCCcc------------------cccchhhh--ccCcccEEEEccccccceecccccccccc
Q 021510 28 RLKVESFNQLKNIEAYNCDKLSN------------------IFWFSTTK--CLPRLERIAVINCSKMKEIFSIGEEVDNA 87 (311)
Q Consensus 28 ~~~~~~l~~L~~L~l~~c~~l~~------------------~~~~~~~~--~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 87 (311)
+..++.+++|++|+++++. ++. + |..++ ++++|++|++++|.....++.
T Consensus 199 p~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~i--p~~l~~~~l~~L~~L~L~~n~l~~~~p~-------- 267 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYK--TEDLKWDNLKDLTDVEVYNCPNLTKLPT-------- 267 (636)
T ss_dssp CGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT--TSCCCGGGCTTCCEEEEECCTTCSSCCT--------
T ss_pred CHHHhcccCCCEEECcCCc-cccccccccccccccchhcccC--chhhhhcccCCCCEEEecCCcCCccChH--------
Confidence 3457889999999999975 665 4 55666 899999999999876666552
Q ss_pred cceeeecccceEecCCCCCccc--cccCCCCCCCCCCccccccccccccccccccccccccccc--ccccCCCccEEEee
Q 021510 88 IEKIEFAQLRSLSLGNLPEVTS--FCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFN--EKVALPNLEVLEIS 163 (311)
Q Consensus 88 ~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~--~~~~l~~L~~L~l~ 163 (311)
.+..+++|++|+++++..++. +|.....-. .......+..+.+. ...+. . +.. .+..+++|++|+++
T Consensus 268 -~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~--~~~~l~~L~~L~L~---~n~l~-~--ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 268 -FLKALPEMQLINVACNRGISGEQLKDDWQALA--DAPVGEKIQIIYIG---YNNLK-T--FPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp -TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHH--HSGGGGTCCEEECC---SSCCS-S--CCCHHHHTTCTTCCEEECC
T ss_pred -HHhcCCCCCEEECcCCCCCccccchHHHHhhh--ccccCCCCCEEECC---CCcCC-c--cCchhhhccCCCCCEEeCc
Confidence 456788999999998864553 432110000 00000111112222 11111 1 112 34568899999999
Q ss_pred eeece-eeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCC-CcEEEEccccccceecccccccCcCCcccC
Q 021510 164 EINVD-QIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQ-LQRLEICSCEDLQEIISENRTDQVIPYFVF 241 (311)
Q Consensus 164 ~~~l~-~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 241 (311)
+|+++ .+ | .+..+++|+.|+++++ .+..+ |.. +..+++ |++|+++++. ++.++. .... ..+
T Consensus 339 ~N~l~g~i------p-~~~~l~~L~~L~L~~N-~l~~l-p~~-l~~l~~~L~~L~Ls~N~-l~~lp~--~~~~----~~l 401 (636)
T 4eco_A 339 YNQLEGKL------P-AFGSEIKLASLNLAYN-QITEI-PAN-FCGFTEQVENLSFAHNK-LKYIPN--IFDA----KSV 401 (636)
T ss_dssp SCCCEEEC------C-CCEEEEEESEEECCSS-EEEEC-CTT-SEEECTTCCEEECCSSC-CSSCCS--CCCT----TCS
T ss_pred CCcCccch------h-hhCCCCCCCEEECCCC-ccccc-cHh-hhhhcccCcEEEccCCc-Ccccch--hhhh----ccc
Confidence 99877 54 4 6677889999999886 44444 544 677888 9999999987 665532 1111 115
Q ss_pred CccCeEecccCcccccccCCC-----cccCCCcccEEEEecCCCcccccccccc-CCCCCcccccccc
Q 021510 242 PQLTTLKLQDLPKLRCLYPGM-----HSSEWPALEILLVYGCDKLKIFAADLSQ-NNENDQLGIPAQQ 303 (311)
Q Consensus 242 ~~L~~L~l~~c~~L~~l~~~~-----~~~~~~~L~~L~i~~c~~l~~lp~~~~~-~~~~~~~~~~~~~ 303 (311)
++|+.|+++++.--...+... ....+++|++|++++| ++..+|..... ......+.+..++
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC
Confidence 589999999865433333222 0125678999999886 45577765443 3455566665554
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.58 E-value=1e-13 Score=126.89 Aligned_cols=111 Identities=18% Similarity=0.285 Sum_probs=62.9
Q ss_pred ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccc
Q 021510 152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENR 231 (311)
Q Consensus 152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 231 (311)
..+++|++|++++|+++.+ .|..+..+++|++|+++++ .+..+ +...+..+++|++|++++|. ++.+... .
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~ 366 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKI-----DDNAFWGLTHLLKLNLSQN-FLGSI-DSRMFENLDKLEVLDLSYNH-IRALGDQ-S 366 (455)
T ss_dssp TTCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSS-CCCEE-CGGGGTTCTTCCEEECCSSC-CCEECTT-T
T ss_pred ccCCCCCEEECCCCccccc-----ChhHhcCcccCCEEECCCC-ccCCc-ChhHhcCcccCCEEECCCCc-ccccChh-h
Confidence 3456666666666655554 1334556667777777664 34444 22335666777777777765 5544221 1
Q ss_pred ccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 232 TDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
. ..+++|+.|+++++ +++.++.... ..+++|++|++.+++
T Consensus 367 ~------~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 367 F------LGLPNLKELALDTN-QLKSVPDGIF-DRLTSLQKIWLHTNP 406 (455)
T ss_dssp T------TTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred c------cccccccEEECCCC-ccccCCHhHh-ccCCcccEEEccCCC
Confidence 1 12677777777763 5555554321 356777777776644
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=1.2e-13 Score=135.48 Aligned_cols=65 Identities=17% Similarity=0.311 Sum_probs=45.3
Q ss_pred ccCCcccEEeeccccccccc--c-------------ccccccc--CCCCccEEEEcCCCCCcccccchhhhccCcccEEE
Q 021510 5 DAFPLLQSLILHNLINMERL--C-------------IDRLKVE--SFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIA 67 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l--~-------------~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 67 (311)
..+++|++|+|+++. ++.. . ..+..++ .+++|++|++++|.....+ |..+..+++|++|+
T Consensus 445 ~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i--P~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 445 QRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL--PDFLYDLPELQSLN 521 (876)
T ss_dssp GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC--CGGGGGCSSCCEEE
T ss_pred hcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC--hHHHhCCCCCCEEE
Confidence 456788888888864 5550 0 0144445 7888888888887655554 46677888888888
Q ss_pred Ecccc
Q 021510 68 VINCS 72 (311)
Q Consensus 68 i~~c~ 72 (311)
++++.
T Consensus 522 Ls~N~ 526 (876)
T 4ecn_A 522 IACNR 526 (876)
T ss_dssp CTTCT
T ss_pred CcCCC
Confidence 88875
No 23
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.57 E-value=2.9e-14 Score=126.40 Aligned_cols=242 Identities=13% Similarity=0.096 Sum_probs=153.3
Q ss_pred CccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccc
Q 021510 4 CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEE 83 (311)
Q Consensus 4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 83 (311)
..-.++|++|+++++. ++++. ...++.+++|++|+++++ .++.+. +..+..+++|++|+++++. +..++.
T Consensus 48 ~~~~~~L~~L~l~~n~-i~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~---- 117 (353)
T 2z80_A 48 SGLTEAVKSLDLSNNR-ITYIS--NSDLQRCVNLQALVLTSN-GINTIE-EDSFSSLGSLEHLDLSYNY-LSNLSS---- 117 (353)
T ss_dssp TTCCTTCCEEECTTSC-CCEEC--TTTTTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSC-CSSCCH----
T ss_pred ccccccCcEEECCCCc-CcccC--HHHhccCCCCCEEECCCC-ccCccC-HhhcCCCCCCCEEECCCCc-CCcCCH----
Confidence 3445789999999964 66642 224688999999999987 566542 3557789999999999863 444432
Q ss_pred cccccceeeecccceEecCCCCCcccccc-CCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEe
Q 021510 84 VDNAIEKIEFAQLRSLSLGNLPEVTSFCC-EVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEI 162 (311)
Q Consensus 84 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 162 (311)
..+..+++|++|+++++ .++.++. .... ....+..+.+..... ...- ....+..+++|++|++
T Consensus 118 ----~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~-------~l~~L~~L~l~~n~~--~~~~--~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 118 ----SWFKPLSSLTFLNLLGN-PYKTLGETSLFS-------HLTKLQILRVGNMDT--FTKI--QRKDFAGLTFLEELEI 181 (353)
T ss_dssp ----HHHTTCTTCSEEECTTC-CCSSSCSSCSCT-------TCTTCCEEEEEESSS--CCEE--CTTTTTTCCEEEEEEE
T ss_pred ----hHhCCCccCCEEECCCC-CCcccCchhhhc-------cCCCCcEEECCCCcc--cccc--CHHHccCCCCCCEEEC
Confidence 12456789999999887 4555443 1111 111222222222100 0000 0122345789999999
Q ss_pred eeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc--C------
Q 021510 163 SEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD--Q------ 234 (311)
Q Consensus 163 ~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~--~------ 234 (311)
++|+++.+ .|..+..+++|++|+++++. +..+ +...+..+++|++|+++++. ++......-.. .
T Consensus 182 ~~n~l~~~-----~~~~l~~l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~ 253 (353)
T 2z80_A 182 DASDLQSY-----EPKSLKSIQNVSHLILHMKQ-HILL-LEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKK 253 (353)
T ss_dssp EETTCCEE-----CTTTTTTCSEEEEEEEECSC-STTH-HHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCE
T ss_pred CCCCcCcc-----CHHHHhccccCCeecCCCCc-cccc-hhhhhhhcccccEEECCCCc-cccccccccccccccchhhc
Confidence 99977766 25667889999999999964 5555 55556778999999999987 55432110000 0
Q ss_pred ----------------cCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCc
Q 021510 235 ----------------VIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKL 281 (311)
Q Consensus 235 ----------------~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l 281 (311)
...+..+++|+.|+++++ +++.++.... ..+++|++|++.+++-.
T Consensus 254 l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~-~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIF-DRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSCBC
T ss_pred cccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHH-hcCCCCCEEEeeCCCcc
Confidence 001223678888888875 5667665431 36788888988887643
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.57 E-value=1.2e-13 Score=126.22 Aligned_cols=243 Identities=15% Similarity=0.161 Sum_probs=135.8
Q ss_pred ccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccc
Q 021510 10 LQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIE 89 (311)
Q Consensus 10 L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 89 (311)
.++++..+ .+++.++. +-.+++++|+++++ +++.+. +..+..+++|++|+++++. +..+.. ..
T Consensus 45 ~~~v~c~~-~~l~~iP~-----~~~~~l~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~Ls~n~-i~~i~~--------~~ 107 (440)
T 3zyj_A 45 FSKVICVR-KNLREVPD-----GISTNTRLLNLHEN-QIQIIK-VNSFKHLRHLEILQLSRNH-IRTIEI--------GA 107 (440)
T ss_dssp SCEEECCS-CCCSSCCS-----CCCTTCSEEECCSC-CCCEEC-TTTTSSCSSCCEEECCSSC-CCEECG--------GG
T ss_pred CCEEEeCC-CCcCcCCC-----CCCCCCcEEEccCC-cCCeeC-HHHhhCCCCCCEEECCCCc-CCccCh--------hh
Confidence 34555555 34555422 33489999999996 466653 3567889999999999964 555442 23
Q ss_pred eeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee-ece
Q 021510 90 KIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI-NVD 168 (311)
Q Consensus 90 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~ 168 (311)
+..+++|++|+++++ +++.++..... ....+..+.+.. ..+..-. ...+..+++|++|++++| .+.
T Consensus 108 ~~~l~~L~~L~L~~n-~l~~~~~~~~~-------~l~~L~~L~L~~---N~i~~~~--~~~~~~l~~L~~L~l~~~~~l~ 174 (440)
T 3zyj_A 108 FNGLANLNTLELFDN-RLTTIPNGAFV-------YLSKLKELWLRN---NPIESIP--SYAFNRIPSLRRLDLGELKRLS 174 (440)
T ss_dssp GTTCSSCCEEECCSS-CCSSCCTTTSC-------SCSSCCEEECCS---CCCCEEC--TTTTTTCTTCCEEECCCCTTCC
T ss_pred ccCCccCCEEECCCC-cCCeeCHhHhh-------ccccCceeeCCC---CcccccC--HHHhhhCcccCEeCCCCCCCcc
Confidence 456899999999997 56655442111 001111122211 1111000 012234566677776665 455
Q ss_pred eeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEe
Q 021510 169 QIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLK 248 (311)
Q Consensus 169 ~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 248 (311)
.+. +..+..+++|++|+++++ .++.+ +. +..+++|++|++++|. ++.+... . +..+++|+.|+
T Consensus 175 ~i~-----~~~~~~l~~L~~L~L~~n-~l~~~-~~--~~~l~~L~~L~Ls~N~-l~~~~~~-~------~~~l~~L~~L~ 237 (440)
T 3zyj_A 175 YIS-----EGAFEGLSNLRYLNLAMC-NLREI-PN--LTPLIKLDELDLSGNH-LSAIRPG-S------FQGLMHLQKLW 237 (440)
T ss_dssp EEC-----TTTTTTCSSCCEEECTTS-CCSSC-CC--CTTCSSCCEEECTTSC-CCEECTT-T------TTTCTTCCEEE
T ss_pred eeC-----cchhhcccccCeecCCCC-cCccc-cc--cCCCcccCEEECCCCc-cCccChh-h------hccCccCCEEE
Confidence 441 123556667777777664 44434 21 4556677777777765 5554321 1 12277788888
Q ss_pred cccCcccccccCCCcccCCCcccEEEEecCCCcccccccc-ccCCCCCccccccc
Q 021510 249 LQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADL-SQNNENDQLGIPAQ 302 (311)
Q Consensus 249 l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~-~~~~~~~~~~~~~~ 302 (311)
++++ +++.+..... ..+++|++|+++++ +++.+|.+. ........+.+..+
T Consensus 238 L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 238 MIQS-QIQVIERNAF-DNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CTTC-CCCEECTTSS-TTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCC-ceeEEChhhh-cCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence 7774 4555544331 36788888888876 555555432 22333444444444
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.57 E-value=9e-15 Score=139.70 Aligned_cols=256 Identities=14% Similarity=0.188 Sum_probs=167.9
Q ss_pred CccCCcccEEeecccccccc------------------ccccccccc--CCCCccEEEEcCCCCCcccccchhhhccCcc
Q 021510 4 CDAFPLLQSLILHNLINMER------------------LCIDRLKVE--SFNQLKNIEAYNCDKLSNIFWFSTTKCLPRL 63 (311)
Q Consensus 4 ~~~l~~L~~L~L~~~~~l~~------------------l~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 63 (311)
.+.+++|++|+++++. +++ + +..++ .+++|++|++++|.....+ |..++.+++|
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~i---p~~l~~~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L 275 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYK---TEDLKWDNLKDLTDVEVYNCPNLTKL--PTFLKALPEM 275 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT---TSCCCGGGCTTCCEEEEECCTTCSSC--CTTTTTCSSC
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccC---chhhhhcccCCCCEEEecCCcCCccC--hHHHhcCCCC
Confidence 3467899999999975 666 4 55567 9999999999998766555 5778899999
Q ss_pred cEEEEccccccce--ecccccccccccceee------ecccceEecCCCCCcccccc--CCCCCCCCCCccccccccccc
Q 021510 64 ERIAVINCSKMKE--IFSIGEEVDNAIEKIE------FAQLRSLSLGNLPEVTSFCC--EVETPSASPNRQVSQEESTAM 133 (311)
Q Consensus 64 ~~L~i~~c~~l~~--~~~~~~~~~~~~~~~~------l~~L~~L~l~~~~~l~~l~~--~~~~~~~~~~~~~~~~~~l~l 133 (311)
++|+++++..+.. ++. .+.. +++|++|+++++ +++.++. ... ....+..+.+
T Consensus 276 ~~L~Ls~n~~l~~~~lp~---------~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~--------~l~~L~~L~L 337 (636)
T 4eco_A 276 QLINVACNRGISGEQLKD---------DWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQ--------KMKKLGMLEC 337 (636)
T ss_dssp CEEECTTCTTSCHHHHHH---------HHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHT--------TCTTCCEEEC
T ss_pred CEEECcCCCCCccccchH---------HHHhhhccccCCCCCEEECCCC-cCCccCchhhhc--------cCCCCCEEeC
Confidence 9999999874442 442 2333 389999999987 4545443 110 0111122222
Q ss_pred ccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCc-ccEEEEecCCCCccccchHHHhc--cC
Q 021510 134 YCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQN-LTRLIVWHCHKLKYIFSASMIRS--LK 210 (311)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~-L~~L~i~~c~~l~~~~~~~~~~~--l~ 210 (311)
. ...+.+..+ .+..+++|++|++++|+++.+ |..+..+++ |+.|+++++. +..+ |.. +.. ++
T Consensus 338 ~---~N~l~g~ip---~~~~l~~L~~L~L~~N~l~~l------p~~l~~l~~~L~~L~Ls~N~-l~~l-p~~-~~~~~l~ 402 (636)
T 4eco_A 338 L---YNQLEGKLP---AFGSEIKLASLNLAYNQITEI------PANFCGFTEQVENLSFAHNK-LKYI-PNI-FDAKSVS 402 (636)
T ss_dssp C---SCCCEEECC---CCEEEEEESEEECCSSEEEEC------CTTSEEECTTCCEEECCSSC-CSSC-CSC-CCTTCSS
T ss_pred c---CCcCccchh---hhCCCCCCCEEECCCCccccc------cHhhhhhcccCcEEEccCCc-Cccc-chh-hhhcccC
Confidence 2 222221222 345578999999999988866 667888888 9999999964 5555 433 343 44
Q ss_pred CCcEEEEccccccceeccccccc-CcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccc
Q 021510 211 QLQRLEICSCEDLQEIISENRTD-QVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLS 289 (311)
Q Consensus 211 ~L~~L~l~~c~~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~ 289 (311)
+|++|++++|. +...... ... .......+++|+.|+++++ +++.++... ...+++|++|++++|. +..+|.+..
T Consensus 403 ~L~~L~Ls~N~-l~~~~p~-~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~l~~L~~L~Ls~N~-l~~i~~~~~ 477 (636)
T 4eco_A 403 VMSAIDFSYNE-IGSVDGK-NFDPLDPTPFKGINVSSINLSNN-QISKFPKEL-FSTGSPLSSINLMGNM-LTEIPKNSL 477 (636)
T ss_dssp CEEEEECCSSC-TTTTTTC-SSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHH-HHTTCCCSEEECCSSC-CSBCCSSSS
T ss_pred ccCEEECcCCc-CCCcchh-hhcccccccccCCCCCEEECcCC-ccCcCCHHH-HccCCCCCEEECCCCC-CCCcCHHHh
Confidence 89999999997 5443211 111 0001112679999999985 566665533 2358999999999875 557886654
Q ss_pred cCC--------CCCcccccccc
Q 021510 290 QNN--------ENDQLGIPAQQ 303 (311)
Q Consensus 290 ~~~--------~~~~~~~~~~~ 303 (311)
... ....+.++.++
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSC
T ss_pred ccccccccccCCccEEECcCCc
Confidence 433 45556665554
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=3e-14 Score=121.93 Aligned_cols=212 Identities=17% Similarity=0.210 Sum_probs=143.5
Q ss_pred CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510 8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA 87 (311)
Q Consensus 8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 87 (311)
++|++|+++++ +++.+. ...++.+++|++|+++++ .++.+. +..+..+++|++|+++++. +..++.
T Consensus 28 ~~l~~L~ls~n-~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-------- 93 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLG--SYSFFSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGNP-IQSLAL-------- 93 (276)
T ss_dssp TTCCEEECTTC-CCCEEC--TTTTTTCTTCSEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTCC-CCEECT--------
T ss_pred CCccEEECCCC-cccccC--HhHhccccCCcEEECCCC-cCCccC-HHHccCCcCCCEEECCCCc-cCccCh--------
Confidence 46889999885 466642 225677889999999886 455542 3456778889999988864 333331
Q ss_pred cceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeec
Q 021510 88 IEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINV 167 (311)
Q Consensus 88 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 167 (311)
..+..+++|++|++.++ ++..++. ..+..+++|++|++++|.+
T Consensus 94 ~~~~~l~~L~~L~l~~n-~l~~~~~------------------------------------~~~~~l~~L~~L~l~~n~l 136 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVET-NLASLEN------------------------------------FPIGHLKTLKELNVAHNLI 136 (276)
T ss_dssp TTTTTCTTCCEEECTTS-CCCCSTT------------------------------------CCCTTCTTCCEEECCSSCC
T ss_pred hhhcCCccccEEECCCC-CccccCc------------------------------------hhcccCCCCCEEECcCCcc
Confidence 13456788888888876 3333222 1123478999999999977
Q ss_pred eeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCc----EEEEccccccceecccccccCcCCcccCCc
Q 021510 168 DQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQ----RLEICSCEDLQEIISENRTDQVIPYFVFPQ 243 (311)
Q Consensus 168 ~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~----~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 243 (311)
+.+ ..|..+..+++|+.|+++++ .++.+ +...+..+++|+ +|+++++. ++.+... ... ..+
T Consensus 137 ~~~----~l~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~--~~~------~~~ 201 (276)
T 2z62_A 137 QSF----KLPEYFSNLTNLEHLDLSSN-KIQSI-YCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPG--AFK------EIR 201 (276)
T ss_dssp CCC----CCCGGGGGCTTCCEEECCSS-CCCEE-CGGGGHHHHTCTTCCEEEECCSSC-CCEECTT--SSC------SCC
T ss_pred cee----cCchhhccCCCCCEEECCCC-CCCcC-CHHHhhhhhhccccceeeecCCCc-ccccCcc--ccC------CCc
Confidence 753 12556778899999999996 45555 323355566666 89999987 7766431 111 458
Q ss_pred cCeEecccCcccccccCCCcccCCCcccEEEEe------cCCCccccccc
Q 021510 244 LTTLKLQDLPKLRCLYPGMHSSEWPALEILLVY------GCDKLKIFAAD 287 (311)
Q Consensus 244 L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~------~c~~l~~lp~~ 287 (311)
|+.|+++++ +++.++.... ..+++|++|++. +|+.++.+..+
T Consensus 202 L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~~~c~c~~l~~l~~~ 249 (276)
T 2z62_A 202 LKELALDTN-QLKSVPDGIF-DRLTSLQKIWLHTNPWDCSCPRIDYLSRW 249 (276)
T ss_dssp EEEEECCSS-CCSCCCTTTT-TTCCSCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred ccEEECCCC-ceeecCHhHh-cccccccEEEccCCcccccCCchHHHHHH
Confidence 999999986 4777765432 468999999999 57777665444
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.57 E-value=1e-13 Score=121.74 Aligned_cols=229 Identities=18% Similarity=0.193 Sum_probs=118.8
Q ss_pred CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccc
Q 021510 7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDN 86 (311)
Q Consensus 7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 86 (311)
.++|++|+++++ +++++. ...++.+++|++|+++++ .++.+. +..+..+++|++|+++++. +..++.
T Consensus 51 ~~~l~~L~L~~n-~i~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~l~~------- 117 (330)
T 1xku_A 51 PPDTALLDLQNN-KITEIK--DGDFKNLKNLHTLILINN-KISKIS-PGAFAPLVKLERLYLSKNQ-LKELPE------- 117 (330)
T ss_dssp CTTCCEEECCSS-CCCCBC--TTTTTTCTTCCEEECCSS-CCCCBC-TTTTTTCTTCCEEECCSSC-CSBCCS-------
T ss_pred CCCCeEEECCCC-cCCEeC--hhhhccCCCCCEEECCCC-cCCeeC-HHHhcCCCCCCEEECCCCc-CCccCh-------
Confidence 356667777664 354431 123566677777777765 344332 3445667777777776653 333331
Q ss_pred ccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeee
Q 021510 87 AIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEIN 166 (311)
Q Consensus 87 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (311)
..+++|++|+++++ .++.++..... ....+..+.+.. ............+..+++|++|++++|+
T Consensus 118 ----~~~~~L~~L~l~~n-~l~~~~~~~~~-------~l~~L~~L~l~~---n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 118 ----KMPKTLQELRVHEN-EITKVRKSVFN-------GLNQMIVVELGT---NPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ----SCCTTCCEEECCSS-CCCBBCHHHHT-------TCTTCCEEECCS---SCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ----hhcccccEEECCCC-cccccCHhHhc-------CCccccEEECCC---CcCCccCcChhhccCCCCcCEEECCCCc
Confidence 11256666666654 23332211000 000111111111 1111000111223456777888887776
Q ss_pred ceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCe
Q 021510 167 VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTT 246 (311)
Q Consensus 167 l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~ 246 (311)
++.+ |..+ .++|++|+++++ .+....+ ..+..+++|++|+++++. ++.+... .+..+++|+.
T Consensus 183 l~~l------~~~~--~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~-------~~~~l~~L~~ 244 (330)
T 1xku_A 183 ITTI------PQGL--PPSLTELHLDGN-KITKVDA-ASLKGLNNLAKLGLSFNS-ISAVDNG-------SLANTPHLRE 244 (330)
T ss_dssp CCSC------CSSC--CTTCSEEECTTS-CCCEECT-GGGTTCTTCCEEECCSSC-CCEECTT-------TGGGSTTCCE
T ss_pred cccC------Cccc--cccCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCCc-CceeChh-------hccCCCCCCE
Confidence 6654 3222 257777777775 3444423 336677778888887776 5554321 1122677777
Q ss_pred EecccCcccccccCCCcccCCCcccEEEEecCCCccccc
Q 021510 247 LKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFA 285 (311)
Q Consensus 247 L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp 285 (311)
|+++++ +++.++... ..+++|++|++.+|+ ++.++
T Consensus 245 L~L~~N-~l~~lp~~l--~~l~~L~~L~l~~N~-i~~~~ 279 (330)
T 1xku_A 245 LHLNNN-KLVKVPGGL--ADHKYIQVVYLHNNN-ISAIG 279 (330)
T ss_dssp EECCSS-CCSSCCTTT--TTCSSCCEEECCSSC-CCCCC
T ss_pred EECCCC-cCccCChhh--ccCCCcCEEECCCCc-CCccC
Confidence 777775 555665543 456777777777653 44444
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.56 E-value=1.3e-13 Score=126.41 Aligned_cols=242 Identities=15% Similarity=0.129 Sum_probs=133.1
Q ss_pred cEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccce
Q 021510 11 QSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEK 90 (311)
Q Consensus 11 ~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 90 (311)
..++..+ .+++.++. +-.+++++|+++++ +++.+. +..+..+++|++|+++++ .+..++. ..+
T Consensus 57 ~~v~c~~-~~l~~iP~-----~~~~~l~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~Ls~n-~i~~~~~--------~~~ 119 (452)
T 3zyi_A 57 SKVVCTR-RGLSEVPQ-----GIPSNTRYLNLMEN-NIQMIQ-ADTFRHLHHLEVLQLGRN-SIRQIEV--------GAF 119 (452)
T ss_dssp CEEECCS-SCCSSCCS-----CCCTTCSEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCEECT--------TTT
T ss_pred cEEEECC-CCcCccCC-----CCCCCccEEECcCC-cCceEC-HHHcCCCCCCCEEECCCC-ccCCcCh--------hhc
Confidence 4455444 23555422 23479999999996 566543 456788999999999996 4555442 234
Q ss_pred eeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee-ecee
Q 021510 91 IEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI-NVDQ 169 (311)
Q Consensus 91 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~ 169 (311)
..+++|++|+++++ .++.++..... ....+..+.+... .+..-. ...+..+++|++|++++| .+..
T Consensus 120 ~~l~~L~~L~L~~n-~l~~~~~~~~~-------~l~~L~~L~L~~N---~l~~~~--~~~~~~l~~L~~L~l~~~~~l~~ 186 (452)
T 3zyi_A 120 NGLASLNTLELFDN-WLTVIPSGAFE-------YLSKLRELWLRNN---PIESIP--SYAFNRVPSLMRLDLGELKKLEY 186 (452)
T ss_dssp TTCTTCCEEECCSS-CCSBCCTTTSS-------SCTTCCEEECCSC---CCCEEC--TTTTTTCTTCCEEECCCCTTCCE
T ss_pred cCcccCCEEECCCC-cCCccChhhhc-------ccCCCCEEECCCC---CcceeC--HhHHhcCCcccEEeCCCCCCccc
Confidence 57899999999997 46655442111 0011111222110 010000 011234566666666665 4444
Q ss_pred eeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEec
Q 021510 170 IWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKL 249 (311)
Q Consensus 170 i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 249 (311)
+. +..+..+++|++|+++++ .+..+ + .+..+++|++|++++|. ++.+... . +..+++|+.|++
T Consensus 187 i~-----~~~~~~l~~L~~L~L~~n-~l~~~-~--~~~~l~~L~~L~Ls~N~-l~~~~~~-~------~~~l~~L~~L~L 249 (452)
T 3zyi_A 187 IS-----EGAFEGLFNLKYLNLGMC-NIKDM-P--NLTPLVGLEELEMSGNH-FPEIRPG-S------FHGLSSLKKLWV 249 (452)
T ss_dssp EC-----TTTTTTCTTCCEEECTTS-CCSSC-C--CCTTCTTCCEEECTTSC-CSEECGG-G------GTTCTTCCEEEC
T ss_pred cC-----hhhccCCCCCCEEECCCC-ccccc-c--cccccccccEEECcCCc-CcccCcc-c------ccCccCCCEEEe
Confidence 41 123455666666666664 33333 2 14456666677766665 5544221 1 122777888888
Q ss_pred ccCcccccccCCCcccCCCcccEEEEecCCCcccccccc-ccCCCCCccccccc
Q 021510 250 QDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADL-SQNNENDQLGIPAQ 302 (311)
Q Consensus 250 ~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~-~~~~~~~~~~~~~~ 302 (311)
+++ +++.+..... ..+++|++|+++++ +++.+|.+. ........+.+..+
T Consensus 250 ~~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 250 MNS-QVSLIERNAF-DGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TTS-CCCEECTTTT-TTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred CCC-cCceECHHHh-cCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence 774 4455543321 36788888888887 566666443 23333445555444
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.56 E-value=7.7e-14 Score=132.38 Aligned_cols=253 Identities=15% Similarity=0.135 Sum_probs=132.7
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
..+++|++|++.++. ++.+ +.+..+++|++|++++|.. ..+ + .+ .+++|++|+++++..+..+.
T Consensus 282 ~~l~~L~~L~l~~~~-~~~l----~~l~~~~~L~~L~l~~n~l-~~l--p-~~-~l~~L~~L~l~~n~~~~~~~------ 345 (606)
T 3vq2_A 282 HCLANVSAMSLAGVS-IKYL----EDVPKHFKWQSLSIIRCQL-KQF--P-TL-DLPFLKSLTLTMNKGSISFK------ 345 (606)
T ss_dssp GGGTTCSEEEEESCC-CCCC----CCCCTTCCCSEEEEESCCC-SSC--C-CC-CCSSCCEEEEESCSSCEECC------
T ss_pred ccCCCCCEEEecCcc-chhh----hhccccccCCEEEcccccC-ccc--c-cC-CCCccceeeccCCcCccchh------
Confidence 346788888888864 4553 2567788888999988765 555 2 33 78889999988886554432
Q ss_pred ccccceeeecccceEecCCCCCccccccCCCCCCCCCCccccccccccccc--------------------ccccccccc
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYC--------------------SSEITLDIS 144 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~--------------------~~~~~~~~~ 144 (311)
...+++|++|+++++ .++........... ...+..+.+.. +....+...
T Consensus 346 -----~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~-----~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 346 -----KVALPSLSYLDLSRN-ALSFSGCCSYSDLG-----TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp -----CCCCTTCCEEECCSS-CEEEEEECCHHHHC-----CSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEEST
T ss_pred -----hccCCCCCEEECcCC-ccCCCcchhhhhcc-----CCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCc
Confidence 346789999999886 34333100000000 00011111111 000000000
Q ss_pred cccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccc
Q 021510 145 TLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQ 224 (311)
Q Consensus 145 ~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 224 (311)
. ....+..+++|++|++++|.+... .|..+..+++|++|+++++.......+. .+..+++|++|++++|. ++
T Consensus 415 ~-~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~n~-l~ 486 (606)
T 3vq2_A 415 T-EFSAFLSLEKLLYLDISYTNTKID-----FDGIFLGLTSLNTLKMAGNSFKDNTLSN-VFANTTNLTFLDLSKCQ-LE 486 (606)
T ss_dssp T-TTTTTTTCTTCCEEECTTSCCEEC-----CTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSC-CC
T ss_pred c-ChhhhhccccCCEEECcCCCCCcc-----chhhhcCCCCCCEEECCCCcCCCcchHH-hhccCCCCCEEECCCCc-CC
Confidence 0 001223345555666655544443 1334555666666666665322212122 24556666666666665 54
Q ss_pred eecccccccCcCCcccCCccCeEecccCcccccc-cCCCcccCCCcccEEEEecCCCccccccccccCC-CCCccccccc
Q 021510 225 EIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCL-YPGMHSSEWPALEILLVYGCDKLKIFAADLSQNN-ENDQLGIPAQ 302 (311)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l-~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~-~~~~~~~~~~ 302 (311)
.+... . +..+++|+.|++++| +++.+ +... ..+++|++|++++|. ++.+|.++.... ....+.+..+
T Consensus 487 ~~~~~-~------~~~l~~L~~L~Ls~N-~l~~~~~~~~--~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 487 QISWG-V------FDTLHRLQLLNMSHN-NLLFLDSSHY--NQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp EECTT-T------TTTCTTCCEEECCSS-CCSCEEGGGT--TTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred ccChh-h------hcccccCCEEECCCC-cCCCcCHHHc--cCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCC
Confidence 44221 1 112677777777776 34443 3222 356777778777764 666776544443 2455555444
Q ss_pred c
Q 021510 303 Q 303 (311)
Q Consensus 303 ~ 303 (311)
.
T Consensus 556 ~ 556 (606)
T 3vq2_A 556 S 556 (606)
T ss_dssp C
T ss_pred C
Confidence 3
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.56 E-value=1.3e-13 Score=123.80 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=56.6
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
..+++|++|+++++. ++.+. ...++.+++|++|+++++. ++.+ ++..++.+++|++|+++++ .+..++.
T Consensus 66 ~~l~~L~~L~L~~n~-i~~~~--~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~l~~----- 134 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQ-IEEID--TYAFAYAHTIQKLYMGFNA-IRYL-PPHVFQNVPLLTVLVLERN-DLSSLPR----- 134 (390)
T ss_dssp HHCCCCSEEECTTSC-CCEEC--TTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT-----
T ss_pred cccccCcEEECCCCc-ccccC--hhhccCCCCcCEEECCCCC-CCcC-CHHHhcCCCCCCEEECCCC-ccCcCCH-----
Confidence 346889999998864 55532 2356778888899888864 5554 2345677888888888886 3444442
Q ss_pred ccccceeeecccceEecCCC
Q 021510 85 DNAIEKIEFAQLRSLSLGNL 104 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~ 104 (311)
..+..+++|++|+++++
T Consensus 135 ---~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 135 ---GIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp ---TTTTTCTTCCEEECCSS
T ss_pred ---HHhcCCCCCcEEECCCC
Confidence 11245677777777765
No 31
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=2.2e-14 Score=120.17 Aligned_cols=207 Identities=14% Similarity=0.054 Sum_probs=137.5
Q ss_pred CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510 8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA 87 (311)
Q Consensus 8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 87 (311)
++|++|+++++ +++.+. ...++.+++|++|+++++..++.+. +..+..+++|++|++++|..+..++.
T Consensus 31 ~~l~~L~l~~n-~l~~i~--~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~-------- 98 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIP--SHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDP-------- 98 (239)
T ss_dssp TTCCEEEEESC-CCSEEC--TTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECT--------
T ss_pred CcccEEEEeCC-cceEEC--HHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCH--------
Confidence 47999999996 477652 2346789999999999986677762 34567899999999999777877662
Q ss_pred cceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCcc-EEEeeeee
Q 021510 88 IEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLE-VLEISEIN 166 (311)
Q Consensus 88 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~ 166 (311)
..+..+++|++|+++++ .++.++. .. .. ...+ .+..+.+.... .+..-+ ...+..+++|+ +|++++|+
T Consensus 99 ~~f~~l~~L~~L~l~~n-~l~~lp~--~~-~l-~~L~--~L~~L~l~~N~--~l~~i~--~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNT-GLKMFPD--LT-KV-YSTD--IFFILEITDNP--YMTSIP--VNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp TSEECCTTCCEEEEEEE-CCCSCCC--CT-TC-CBCC--SEEEEEEESCT--TCCEEC--TTTTTTTBSSEEEEECCSCC
T ss_pred HHhCCCCCCCEEeCCCC-CCccccc--cc-cc-cccc--cccEEECCCCc--chhhcC--cccccchhcceeEEEcCCCC
Confidence 24567899999999887 3554442 00 00 0000 00112221110 111100 11234578999 99999998
Q ss_pred ceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhcc-CCCcEEEEccccccceecccccccCcCCcccCCccC
Q 021510 167 VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSL-KQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLT 245 (311)
Q Consensus 167 l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~ 245 (311)
++.+ |......++|+.|+++++..++.+ +...+..+ ++|++|++++++ ++.++.. . +++|+
T Consensus 168 l~~i------~~~~~~~~~L~~L~L~~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~-l~~l~~~----~------~~~L~ 229 (239)
T 2xwt_C 168 FTSV------QGYAFNGTKLDAVYLNKNKYLTVI-DKDAFGGVYSGPSLLDVSQTS-VTALPSK----G------LEHLK 229 (239)
T ss_dssp CCEE------CTTTTTTCEEEEEECTTCTTCCEE-CTTTTTTCSBCCSEEECTTCC-CCCCCCT----T------CTTCS
T ss_pred Cccc------CHhhcCCCCCCEEEcCCCCCcccC-CHHHhhccccCCcEEECCCCc-cccCChh----H------hccCc
Confidence 8877 333223379999999997667777 44457788 999999999987 7766431 1 89999
Q ss_pred eEecccCccc
Q 021510 246 TLKLQDLPKL 255 (311)
Q Consensus 246 ~L~l~~c~~L 255 (311)
.|.+.+++.|
T Consensus 230 ~L~l~~~~~l 239 (239)
T 2xwt_C 230 ELIARNTWTL 239 (239)
T ss_dssp EEECTTC---
T ss_pred eeeccCccCC
Confidence 9999987654
No 32
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=7.6e-14 Score=123.65 Aligned_cols=228 Identities=16% Similarity=0.078 Sum_probs=156.7
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
+-.+++++|+|++. +++.+.. ..++.+++|++|+++++...+.+ +...+.++++++++.+.++..+..++.
T Consensus 27 ~l~~~l~~L~Ls~N-~i~~i~~--~~f~~l~~L~~L~Ls~N~i~~~i-~~~~f~~L~~l~~~l~~~~N~l~~l~~----- 97 (350)
T 4ay9_X 27 DLPRNAIELRFVLT-KLRVIQK--GAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLYINP----- 97 (350)
T ss_dssp TCCTTCSEEEEESC-CCSEECT--TSSTTCTTCCEEEEECCTTCCEE-CTTSBCSCTTCCEEEEEEETTCCEECT-----
T ss_pred CcCCCCCEEEccCC-cCCCcCH--HHHcCCCCCCEEECcCCCCCCcc-ChhHhhcchhhhhhhcccCCcccccCc-----
Confidence 34568999999995 5777532 24678999999999998655544 334567788888888877788887763
Q ss_pred ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccC-CCccEEEee
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVAL-PNLEVLEIS 163 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~ 163 (311)
..+..+++|++|+++++ .++.++....... ..+..+.+..... +..-. ...+..+ ..++.|+++
T Consensus 98 ---~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~-------~~l~~l~l~~~~~--i~~l~--~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 98 ---EAFQNLPNLQYLLISNT-GIKHLPDVHKIHS-------LQKVLLDIQDNIN--IHTIE--RNSFVGLSFESVILWLN 162 (350)
T ss_dssp ---TSBCCCTTCCEEEEEEE-CCSSCCCCTTCCB-------SSCEEEEEESCTT--CCEEC--TTSSTTSBSSCEEEECC
T ss_pred ---hhhhhcccccccccccc-ccccCCchhhccc-------chhhhhhhccccc--ccccc--ccchhhcchhhhhhccc
Confidence 23567899999999886 4554443211110 0111111111000 00000 0011122 468899999
Q ss_pred eeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCc
Q 021510 164 EINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQ 243 (311)
Q Consensus 164 ~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 243 (311)
+|+++.+ +.......+|+.+.+.+++.++.+ +...+..+++|++|+++++. ++.++. .. +.+
T Consensus 163 ~N~i~~i------~~~~f~~~~L~~l~l~~~n~l~~i-~~~~f~~l~~L~~LdLs~N~-l~~lp~--~~--------~~~ 224 (350)
T 4ay9_X 163 KNGIQEI------HNSAFNGTQLDELNLSDNNNLEEL-PNDVFHGASGPVILDISRTR-IHSLPS--YG--------LEN 224 (350)
T ss_dssp SSCCCEE------CTTSSTTEEEEEEECTTCTTCCCC-CTTTTTTEECCSEEECTTSC-CCCCCS--SS--------CTT
T ss_pred cccccCC------ChhhccccchhHHhhccCCcccCC-CHHHhccCcccchhhcCCCC-cCccCh--hh--------hcc
Confidence 9999988 445556678999999988899988 65667899999999999996 887743 21 889
Q ss_pred cCeEecccCcccccccCCCcccCCCcccEEEEec
Q 021510 244 LTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYG 277 (311)
Q Consensus 244 L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~ 277 (311)
|++|.+.++..++.++.- ..+++|+.+++.+
T Consensus 225 L~~L~~l~~~~l~~lP~l---~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLPTL---EKLVALMEASLTY 255 (350)
T ss_dssp CCEEECTTCTTCCCCCCT---TTCCSCCEEECSC
T ss_pred chHhhhccCCCcCcCCCc---hhCcChhhCcCCC
Confidence 999999999999999852 4789999999865
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.56 E-value=3.9e-14 Score=127.27 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=62.4
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
..+++|++|+++++. ++.+. +..++.+++|++|+++++ .++.+ +...+..+++|++|+++++. +..++.
T Consensus 90 ~~l~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~L~~n~-l~~~~~----- 158 (390)
T 3o6n_A 90 AYAHTIQKLYMGFNA-IRYLP--PHVFQNVPLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLSMSNNN-LERIED----- 158 (390)
T ss_dssp TTCTTCCEEECCSSC-CCCCC--TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCT-----
T ss_pred cCCCCcCEEECCCCC-CCcCC--HHHhcCCCCCCEEECCCC-ccCcC-CHHHhcCCCCCcEEECCCCc-cCccCh-----
Confidence 467899999999864 65542 234678899999999986 55554 23345789999999999864 333331
Q ss_pred ccccceeeecccceEecCCCCCcccc
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSF 110 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l 110 (311)
..+..+++|++|+++++ .++.+
T Consensus 159 ---~~~~~l~~L~~L~l~~n-~l~~~ 180 (390)
T 3o6n_A 159 ---DTFQATTSLQNLQLSSN-RLTHV 180 (390)
T ss_dssp ---TTTSSCTTCCEEECCSS-CCSBC
T ss_pred ---hhccCCCCCCEEECCCC-cCCcc
Confidence 12456788888888776 34433
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.56 E-value=7.2e-14 Score=132.56 Aligned_cols=257 Identities=16% Similarity=0.140 Sum_probs=160.5
Q ss_pred cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510 9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI 88 (311)
Q Consensus 9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 88 (311)
+|++|++.++ .++.+. ...++.+++|++|+++++ .++.+ +..+..+++|++|+++++. +..+++ .
T Consensus 255 ~L~~L~l~~n-~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~l--p~~l~~l~~L~~L~l~~n~-l~~~~~--------~ 319 (606)
T 3t6q_A 255 SVESINLQKH-YFFNIS--SNTFHCFSGLQELDLTAT-HLSEL--PSGLVGLSTLKKLVLSANK-FENLCQ--------I 319 (606)
T ss_dssp EEEEEECTTC-CCSSCC--TTTTTTCTTCSEEECTTS-CCSCC--CSSCCSCTTCCEEECTTCC-CSBGGG--------G
T ss_pred ceeEEEeecC-ccCccC--HHHhccccCCCEEeccCC-ccCCC--ChhhcccccCCEEECccCC-cCcCch--------h
Confidence 6778888875 355532 233677889999999886 45555 4556788899999998864 333321 1
Q ss_pred ceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeece
Q 021510 89 EKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVD 168 (311)
Q Consensus 89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 168 (311)
.+..+++|++|+++++.....++..... ....+..+.+.. ..+.........+..+++|++|++++|++.
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~-------~l~~L~~L~l~~---n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLE-------NLENLRELDLSH---DDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTT-------TCTTCCEEECCS---SCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred hhhccCcCCEEECCCCCcccccchhhhh-------ccCcCCEEECCC---CccccccCcchhcccCCCCCEEECCCCcCC
Confidence 3456788888888887433333322111 111112222221 111111111123456899999999999877
Q ss_pred eeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEe
Q 021510 169 QIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLK 248 (311)
Q Consensus 169 ~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 248 (311)
.+ .|..+..+++|++|+++++.. ....+...+..+++|++|++++|. +..... .. +..+++|++|+
T Consensus 390 ~~-----~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~------~~~l~~L~~L~ 455 (606)
T 3t6q_A 390 SL-----KTEAFKECPQLELLDLAFTRL-KVKDAQSPFQNLHLLKVLNLSHSL-LDISSE-QL------FDGLPALQHLN 455 (606)
T ss_dssp EE-----CTTTTTTCTTCSEEECTTCCE-ECCTTCCTTTTCTTCCEEECTTCC-CBTTCT-TT------TTTCTTCCEEE
T ss_pred cC-----CHHHhcCCccCCeEECCCCcC-CCcccchhhhCcccCCEEECCCCc-cCCcCH-HH------HhCCCCCCEEE
Confidence 76 245677889999999998643 333233346788999999999997 544321 11 12289999999
Q ss_pred cccCccccc-ccCCCcccCCCcccEEEEecCCCccccccccccCCCCCccccccccc
Q 021510 249 LQDLPKLRC-LYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL 304 (311)
Q Consensus 249 l~~c~~L~~-l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~ 304 (311)
+++++--.. ++.......+++|++|++++|.--...|..+........+.++.+++
T Consensus 456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 999754321 22222225789999999999854445566666666777777777664
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.55 E-value=4.6e-14 Score=125.11 Aligned_cols=250 Identities=12% Similarity=0.043 Sum_probs=146.8
Q ss_pred cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510 9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI 88 (311)
Q Consensus 9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 88 (311)
.....+.++ .+++.++. +-.++|++|+++++ .++.+ ++..+..+++|++|+++++ .+..+.. .
T Consensus 32 ~~~~c~~~~-~~l~~iP~-----~~~~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~--------~ 94 (353)
T 2z80_A 32 RNGICKGSS-GSLNSIPS-----GLTEAVKSLDLSNN-RITYI-SNSDLQRCVNLQALVLTSN-GINTIEE--------D 94 (353)
T ss_dssp TTSEEECCS-TTCSSCCT-----TCCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECTTS-CCCEECT--------T
T ss_pred CCeEeeCCC-CCcccccc-----cccccCcEEECCCC-cCccc-CHHHhccCCCCCEEECCCC-ccCccCH--------h
Confidence 334455554 23555422 33479999999996 46665 2346788999999999997 4555432 1
Q ss_pred ceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee-ec
Q 021510 89 EKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI-NV 167 (311)
Q Consensus 89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l 167 (311)
.+..+++|++|+++++ .++.++..... ....+..+.+.. ..+.. .+....+..+++|++|++++| .+
T Consensus 95 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-------~l~~L~~L~L~~---n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYN-YLSNLSSSWFK-------PLSSLTFLNLLG---NPYKT-LGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp TTTTCTTCCEEECCSS-CCSSCCHHHHT-------TCTTCSEEECTT---CCCSS-SCSSCSCTTCTTCCEEEEEESSSC
T ss_pred hcCCCCCCCEEECCCC-cCCcCCHhHhC-------CCccCCEEECCC---CCCcc-cCchhhhccCCCCcEEECCCCccc
Confidence 3457899999999987 45554432110 001111222221 11110 000012345788888888888 56
Q ss_pred eeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeE
Q 021510 168 DQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTL 247 (311)
Q Consensus 168 ~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L 247 (311)
..+ .+..+..+++|++|+++++. +....+. .+..+++|++|+++++. ++.+... . ...+++|+.|
T Consensus 163 ~~~-----~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~--~-----~~~~~~L~~L 227 (353)
T 2z80_A 163 TKI-----QRKDFAGLTFLEELEIDASD-LQSYEPK-SLKSIQNVSHLILHMKQ-HILLLEI--F-----VDVTSSVECL 227 (353)
T ss_dssp CEE-----CTTTTTTCCEEEEEEEEETT-CCEECTT-TTTTCSEEEEEEEECSC-STTHHHH--H-----HHHTTTEEEE
T ss_pred ccc-----CHHHccCCCCCCEEECCCCC-cCccCHH-HHhccccCCeecCCCCc-cccchhh--h-----hhhcccccEE
Confidence 665 13456778888888888864 4444233 36778888888888876 5443211 0 1126788888
Q ss_pred ecccCcccccccCCC------------------------------cccCCCcccEEEEecCCCcccccccc-ccCCCCCc
Q 021510 248 KLQDLPKLRCLYPGM------------------------------HSSEWPALEILLVYGCDKLKIFAADL-SQNNENDQ 296 (311)
Q Consensus 248 ~l~~c~~L~~l~~~~------------------------------~~~~~~~L~~L~i~~c~~l~~lp~~~-~~~~~~~~ 296 (311)
+++++. ++..+... ....+++|++|++++| +++.+|.+. ........
T Consensus 228 ~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 228 ELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQK 305 (353)
T ss_dssp EEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCE
Confidence 887753 33322110 0125678889999887 566777664 45555666
Q ss_pred cccccccc
Q 021510 297 LGIPAQQL 304 (311)
Q Consensus 297 ~~~~~~~~ 304 (311)
+.+..+.+
T Consensus 306 L~L~~N~~ 313 (353)
T 2z80_A 306 IWLHTNPW 313 (353)
T ss_dssp EECCSSCB
T ss_pred EEeeCCCc
Confidence 66666653
No 36
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=1.2e-13 Score=119.26 Aligned_cols=200 Identities=17% Similarity=0.160 Sum_probs=147.5
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
..+++++++++.+. +++.++. +-.+++++|+++++. ++.+. +..+..+++|++|+++++ .+..++.
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~-----~~~~~l~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~----- 72 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPP-----DLPKDTTILHLSENL-LYTFS-LATLMPYTRLTQLNLDRA-ELTKLQV----- 72 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCS-----CCCTTCCEEECTTSC-CSEEE-GGGGTTCTTCCEEECTTS-CCCEEEC-----
T ss_pred cccCCccEEECCCC-CCCcCCC-----CCCCCCCEEEcCCCc-CCccC-HHHhhcCCCCCEEECCCC-ccCcccC-----
Confidence 46788999999884 5776532 234799999999964 55542 456788999999999996 4555542
Q ss_pred ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE 164 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (311)
...+++|++|+++++ .++.++.. +..+++|++|++++
T Consensus 73 -----~~~l~~L~~L~Ls~N-~l~~l~~~-------------------------------------~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 73 -----DGTLPVLGTLDLSHN-QLQSLPLL-------------------------------------GQTLPALTVLDVSF 109 (290)
T ss_dssp -----CSCCTTCCEEECCSS-CCSSCCCC-------------------------------------TTTCTTCCEEECCS
T ss_pred -----CCCCCcCCEEECCCC-cCCcCchh-------------------------------------hccCCCCCEEECCC
Confidence 246899999999987 45544321 13378999999999
Q ss_pred eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510 165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL 244 (311)
Q Consensus 165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 244 (311)
|+++.+ .+..+..+++|++|+++++ .++.+ +...+..+++|+.|+++++. ++.++. +. +..+++|
T Consensus 110 N~l~~l-----~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~l~~--~~-----~~~l~~L 174 (290)
T 1p9a_G 110 NRLTSL-----PLGALRGLGELQELYLKGN-ELKTL-PPGLLTPTPKLEKLSLANNN-LTELPA--GL-----LNGLENL 174 (290)
T ss_dssp SCCCCC-----CSSTTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTSC-CSCCCT--TT-----TTTCTTC
T ss_pred CcCccc-----CHHHHcCCCCCCEEECCCC-CCCcc-ChhhcccccCCCEEECCCCc-CCccCH--HH-----hcCcCCC
Confidence 988876 1345788899999999995 56666 54557789999999999987 776643 11 1228899
Q ss_pred CeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
+.|++++ .+++.++.+. ...++|+.|++.++|
T Consensus 175 ~~L~L~~-N~l~~ip~~~--~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 175 DTLLLQE-NSLYTIPKGF--FGSHLLPFAFLHGNP 206 (290)
T ss_dssp CEEECCS-SCCCCCCTTT--TTTCCCSEEECCSCC
T ss_pred CEEECCC-CcCCccChhh--cccccCCeEEeCCCC
Confidence 9999988 4677887765 457789999998755
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.55 E-value=2.7e-14 Score=124.03 Aligned_cols=211 Identities=17% Similarity=0.121 Sum_probs=134.4
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
..+++|++|+++++. ++.+...+.....+++|++|+++++ .+..+ +..+..+++|++|+++++. +..++.
T Consensus 49 ~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l--~~~~~~l~~L~~L~l~~n~-l~~~~~----- 118 (306)
T 2z66_A 49 DKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITM--SSNFLGLEQLEHLDFQHSN-LKQMSE----- 118 (306)
T ss_dssp TTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEE--EEEEETCTTCCEEECTTSE-EESSTT-----
T ss_pred hccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccC--hhhcCCCCCCCEEECCCCc-cccccc-----
Confidence 467899999999864 5443211234456899999999997 45544 4457789999999999863 333321
Q ss_pred ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE 164 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (311)
...+..+++|++|+++++. ++........ ....+..+.+.. ..+.. ......+..+++|++|++++
T Consensus 119 --~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-------~l~~L~~L~l~~---n~l~~-~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 119 --FSVFLSLRNLIYLDISHTH-TRVAFNGIFN-------GLSSLEVLKMAG---NSFQE-NFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp --TTTTTTCTTCCEEECTTSC-CEECSTTTTT-------TCTTCCEEECTT---CEEGG-GEECSCCTTCTTCCEEECTT
T ss_pred --chhhhhccCCCEEECCCCc-CCccchhhcc-------cCcCCCEEECCC---Ccccc-ccchhHHhhCcCCCEEECCC
Confidence 0134567899999998873 4333221111 111122222222 11111 00112345589999999999
Q ss_pred eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccC-Cc
Q 021510 165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVF-PQ 243 (311)
Q Consensus 165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~-~~ 243 (311)
|+++.+ .|..+..+++|+.|+++++ .+..+.+. .+..+++|++|++++|. +...... .. ..+ ++
T Consensus 185 n~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~-~~------~~~~~~ 249 (306)
T 2z66_A 185 CQLEQL-----SPTAFNSLSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNH-IMTSKKQ-EL------QHFPSS 249 (306)
T ss_dssp SCCCEE-----CTTTTTTCTTCCEEECTTS-CCSBCCSG-GGTTCTTCCEEECTTSC-CCBCSSS-SC------CCCCTT
T ss_pred CCcCCc-----CHHHhcCCCCCCEEECCCC-ccCccChh-hccCcccCCEeECCCCC-CcccCHH-HH------Hhhhcc
Confidence 988877 2456788999999999996 45555333 37789999999999997 6554321 11 115 48
Q ss_pred cCeEecccCcc
Q 021510 244 LTTLKLQDLPK 254 (311)
Q Consensus 244 L~~L~l~~c~~ 254 (311)
|+.|++++++-
T Consensus 250 L~~L~L~~N~~ 260 (306)
T 2z66_A 250 LAFLNLTQNDF 260 (306)
T ss_dssp CCEEECTTCCE
T ss_pred CCEEEccCCCe
Confidence 99999998653
No 38
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.54 E-value=2.6e-14 Score=124.45 Aligned_cols=191 Identities=16% Similarity=0.271 Sum_probs=135.7
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
..+++|++|++.++ +++.+ +.++.+++|++|++++| .+..+ +. +..+++|++|+++++. +..++
T Consensus 38 ~~l~~L~~L~l~~~-~i~~l----~~~~~l~~L~~L~L~~n-~i~~~--~~-~~~l~~L~~L~L~~n~-l~~~~------ 101 (308)
T 1h6u_A 38 ADLDGITTLSAFGT-GVTTI----EGVQYLNNLIGLELKDN-QITDL--AP-LKNLTKITELELSGNP-LKNVS------ 101 (308)
T ss_dssp HHHHTCCEEECTTS-CCCCC----TTGGGCTTCCEEECCSS-CCCCC--GG-GTTCCSCCEEECCSCC-CSCCG------
T ss_pred HHcCCcCEEEeeCC-CccCc----hhhhccCCCCEEEccCC-cCCCC--hh-HccCCCCCEEEccCCc-CCCch------
Confidence 35788999999986 46553 35678999999999987 56665 22 7889999999999875 44443
Q ss_pred ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE 164 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (311)
.+..+++|++|+++++ .++.++. +..+++|++|++++
T Consensus 102 ----~~~~l~~L~~L~l~~n-~l~~~~~--------------------------------------l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 102 ----AIAGLQSIKTLDLTST-QITDVTP--------------------------------------LAGLSNLQVLYLDL 138 (308)
T ss_dssp ----GGTTCTTCCEEECTTS-CCCCCGG--------------------------------------GTTCTTCCEEECCS
T ss_pred ----hhcCCCCCCEEECCCC-CCCCchh--------------------------------------hcCCCCCCEEECCC
Confidence 3456789999999887 3444321 23378888888888
Q ss_pred eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510 165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL 244 (311)
Q Consensus 165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 244 (311)
|.++.+ + .+..+++|+.|+++++ .+..+ +. +..+++|++|++++|. ++.+.. +..+++|
T Consensus 139 n~l~~~------~-~l~~l~~L~~L~l~~n-~l~~~-~~--l~~l~~L~~L~l~~n~-l~~~~~---------l~~l~~L 197 (308)
T 1h6u_A 139 NQITNI------S-PLAGLTNLQYLSIGNA-QVSDL-TP--LANLSKLTTLKADDNK-ISDISP---------LASLPNL 197 (308)
T ss_dssp SCCCCC------G-GGGGCTTCCEEECCSS-CCCCC-GG--GTTCTTCCEEECCSSC-CCCCGG---------GGGCTTC
T ss_pred CccCcC------c-cccCCCCccEEEccCC-cCCCC-hh--hcCCCCCCEEECCCCc-cCcChh---------hcCCCCC
Confidence 877765 1 2567788888888886 45544 22 6778888888888886 665532 1228888
Q ss_pred CeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
+.|+++++ .++.++. . ..+++|++|++.+++
T Consensus 198 ~~L~L~~N-~l~~~~~-l--~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 198 IEVHLKNN-QISDVSP-L--ANTSNLFIVTLTNQT 228 (308)
T ss_dssp CEEECTTS-CCCBCGG-G--TTCTTCCEEEEEEEE
T ss_pred CEEEccCC-ccCcccc-c--cCCCCCCEEEccCCe
Confidence 88888885 4555542 2 467888888888865
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=2.7e-13 Score=128.56 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=56.7
Q ss_pred cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510 6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD 85 (311)
Q Consensus 6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 85 (311)
.+++|++|+++++. ++.+. +..++.+++|++|+++++. +..+ ++..++.+++|++|++++| .+..++.
T Consensus 73 ~l~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~l~~------ 140 (597)
T 3oja_B 73 SFRQVELLNLNDLQ-IEEID--TYAFAYAHTIQKLYMGFNA-IRYL-PPHVFQNVPLLTVLVLERN-DLSSLPR------ 140 (597)
T ss_dssp HCCCCSEEECTTSC-CCEEC--TTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT------
T ss_pred cCCCCcEEECCCCC-CCCCC--hHHhcCCCCCCEEECCCCc-CCCC-CHHHHcCCCCCCEEEeeCC-CCCCCCH------
Confidence 46788999998864 55532 2356788888888888864 5554 2345677888888888886 3444442
Q ss_pred cccceeeecccceEecCCC
Q 021510 86 NAIEKIEFAQLRSLSLGNL 104 (311)
Q Consensus 86 ~~~~~~~l~~L~~L~l~~~ 104 (311)
..+..+++|++|+++++
T Consensus 141 --~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 141 --GIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp --TTTTTCTTCCEEECCSS
T ss_pred --HHhccCCCCCEEEeeCC
Confidence 11245677777777766
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.53 E-value=2.6e-13 Score=116.57 Aligned_cols=223 Identities=14% Similarity=0.134 Sum_probs=153.8
Q ss_pred cEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccce
Q 021510 11 QSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEK 90 (311)
Q Consensus 11 ~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 90 (311)
++++..+ .+++.++ .+..++|++|+++++ .++.+. +..+..+++|++|+++++ .+..+.. ..+
T Consensus 14 ~~~~c~~-~~l~~ip-----~~~~~~l~~L~l~~n-~i~~~~-~~~~~~~~~L~~L~l~~n-~l~~~~~--------~~~ 76 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVP-----VGIPAASQRIFLHGN-RISHVP-AASFRACRNLTILWLHSN-VLARIDA--------AAF 76 (285)
T ss_dssp CEEECCS-SCCSSCC-----TTCCTTCSEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCEECT--------TTT
T ss_pred eEEEcCc-CCcccCC-----cCCCCCceEEEeeCC-cCCccC-HHHcccCCCCCEEECCCC-ccceeCH--------hhc
Confidence 3455555 3455542 244589999999986 566552 345788999999999986 4544432 234
Q ss_pred eeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceee
Q 021510 91 IEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQI 170 (311)
Q Consensus 91 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i 170 (311)
..+++|++|+++++..++.+... .+..+++|++|++++|+++.+
T Consensus 77 ~~l~~L~~L~l~~n~~l~~~~~~------------------------------------~~~~l~~L~~L~l~~n~l~~~ 120 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLRSVDPA------------------------------------TFHGLGRLHTLHLDRCGLQEL 120 (285)
T ss_dssp TTCTTCCEEECCSCTTCCCCCTT------------------------------------TTTTCTTCCEEECTTSCCCCC
T ss_pred CCccCCCEEeCCCCCCccccCHH------------------------------------HhcCCcCCCEEECCCCcCCEE
Confidence 56899999999998656654321 123479999999999987765
Q ss_pred eccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecc
Q 021510 171 WHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQ 250 (311)
Q Consensus 171 ~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 250 (311)
.|..+..+++|++|+++++ .+..+ +...+..+++|++|+++++. ++.+... . +..+++|+.|+++
T Consensus 121 -----~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~------~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 121 -----GPGLFRGLAALQYLYLQDN-ALQAL-PDDTFRDLGNLTHLFLHGNR-ISSVPER-A------FRGLHSLDRLLLH 185 (285)
T ss_dssp -----CTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCEECTT-T------TTTCTTCCEEECC
T ss_pred -----CHhHhhCCcCCCEEECCCC-ccccc-CHhHhccCCCccEEECCCCc-ccccCHH-H------hcCccccCEEECC
Confidence 2445778999999999996 55555 44447789999999999996 7766431 1 1228999999999
Q ss_pred cCcccccccCCCcccCCCcccEEEEecCCCccccccc-cccCCCCCccccccccc
Q 021510 251 DLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAAD-LSQNNENDQLGIPAQQL 304 (311)
Q Consensus 251 ~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~-~~~~~~~~~~~~~~~~~ 304 (311)
++. ++.+.... ...+++|++|+++++ ++..++.+ +........+.+..+.+
T Consensus 186 ~n~-l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 186 QNR-VAHVHPHA-FRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp SSC-CCEECTTT-TTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CCc-ccccCHhH-ccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 964 55553322 146899999999997 45555533 44455566666665543
No 41
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.53 E-value=3.8e-14 Score=121.17 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=15.8
Q ss_pred cCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccc
Q 021510 32 ESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINC 71 (311)
Q Consensus 32 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 71 (311)
..+++|+.|++.++. ++.+ ..+..+++|++|+++++
T Consensus 38 ~~l~~L~~L~l~~~~-i~~~---~~l~~l~~L~~L~l~~n 73 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-IKSV---QGIQYLPNVRYLALGGN 73 (272)
T ss_dssp HHHTTCCEEECTTSC-CCCC---TTGGGCTTCCEEECTTS
T ss_pred ccccceeeeeeCCCC-cccc---cccccCCCCcEEECCCC
Confidence 344455555554432 2222 22344455555555443
No 42
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=3e-13 Score=115.37 Aligned_cols=201 Identities=16% Similarity=0.175 Sum_probs=135.6
Q ss_pred CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510 8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA 87 (311)
Q Consensus 8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 87 (311)
.+.+.+++++. +++.++. .-.+++++|+++++ .++.+ ++..+..+++|++|+++++. +..++.
T Consensus 16 ~~~~~l~~~~~-~l~~ip~-----~~~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~i~~-------- 78 (270)
T 2o6q_A 16 NNKNSVDCSSK-KLTAIPS-----NIPADTKKLDLQSN-KLSSL-PSKAFHRLTKLRLLYLNDNK-LQTLPA-------- 78 (270)
T ss_dssp TTTTEEECTTS-CCSSCCS-----CCCTTCSEEECCSS-CCSCC-CTTSSSSCTTCCEEECCSSC-CSCCCT--------
T ss_pred CCCCEEEccCC-CCCccCC-----CCCCCCCEEECcCC-CCCee-CHHHhcCCCCCCEEECCCCc-cCeeCh--------
Confidence 35677888774 4666422 22368999999886 45554 23457788999999998853 444432
Q ss_pred cceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeec
Q 021510 88 IEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINV 167 (311)
Q Consensus 88 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 167 (311)
..+..+++|++|+++++ .++.++.. .+..+++|++|++++|++
T Consensus 79 ~~~~~l~~L~~L~l~~n-~l~~~~~~------------------------------------~~~~l~~L~~L~l~~n~l 121 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDN-KLQALPIG------------------------------------VFDQLVNLAELRLDRNQL 121 (270)
T ss_dssp TTTSSCTTCCEEECCSS-CCCCCCTT------------------------------------TTTTCSSCCEEECCSSCC
T ss_pred hhhcCCCCCCEEECCCC-cCCcCCHh------------------------------------HcccccCCCEEECCCCcc
Confidence 12346788999999886 34443321 112368899999999877
Q ss_pred eeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeE
Q 021510 168 DQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTL 247 (311)
Q Consensus 168 ~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L 247 (311)
+.+ .+..+..+++|++|+++++ .+..+ +...+..+++|++|+++++. ++.+... .+..+++|+.|
T Consensus 122 ~~~-----~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~-------~~~~l~~L~~L 186 (270)
T 2o6q_A 122 KSL-----PPRVFDSLTKLTYLSLGYN-ELQSL-PKGVFDKLTSLKELRLYNNQ-LKRVPEG-------AFDKLTELKTL 186 (270)
T ss_dssp CCC-----CTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CSCCCTT-------TTTTCTTCCEE
T ss_pred Cee-----CHHHhCcCcCCCEEECCCC-cCCcc-CHhHccCCcccceeEecCCc-CcEeChh-------HhccCCCcCEE
Confidence 766 1334678889999999885 55555 44446778899999999886 6655321 11227889999
Q ss_pred ecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 248 KLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 248 ~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
+++++ .++.++.... ..+++|+.|++.++|
T Consensus 187 ~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 187 KLDNN-QLKRVPEGAF-DSLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSS-CCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred ECCCC-cCCcCCHHHh-ccccCCCEEEecCCC
Confidence 99886 6667665432 367889999998765
No 43
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=4.4e-15 Score=130.61 Aligned_cols=210 Identities=14% Similarity=0.116 Sum_probs=110.3
Q ss_pred CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510 8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA 87 (311)
Q Consensus 8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 87 (311)
++++.|++.+.. +.+. .+....+++|++|++++|. +.....+..+..+++|++|++++|......+
T Consensus 70 ~~l~~L~l~~n~-l~~~---~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~--------- 135 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQP---LAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIV--------- 135 (336)
T ss_dssp TTCSEEECTTCE-ECSC---CCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHH---------
T ss_pred ccceEEEcCCcc-cccc---chhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHH---------
Confidence 566777776643 3332 2334567888888888874 4432124566778888888888874222221
Q ss_pred cceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee-e
Q 021510 88 IEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI-N 166 (311)
Q Consensus 88 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~ 166 (311)
..+..+++|++|++++|..+++.... .....+++|++|++++| .
T Consensus 136 ~~l~~~~~L~~L~L~~~~~l~~~~l~-----------------------------------~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 136 NTLAKNSNLVRLNLSGCSGFSEFALQ-----------------------------------TLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp HHHTTCTTCSEEECTTCBSCCHHHHH-----------------------------------HHHHHCTTCCEEECCCCTT
T ss_pred HHHhcCCCCCEEECCCCCCCCHHHHH-----------------------------------HHHhcCCCCCEEcCCCCCC
Confidence 12345788888888887655531110 00122566666666666 5
Q ss_pred ceeeeccCCCCCCCCCCC-cccEEEEecCC-CCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510 167 VDQIWHYNHLPVTFPRFQ-NLTRLIVWHCH-KLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL 244 (311)
Q Consensus 167 l~~i~~~~~~p~~~~~l~-~L~~L~i~~c~-~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 244 (311)
++.... +..+..++ +|++|++++|. .+++......+..+++|++|++++|..++..... . +..+++|
T Consensus 181 l~~~~~----~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~------l~~l~~L 249 (336)
T 2ast_B 181 FTEKHV----QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-E------FFQLNYL 249 (336)
T ss_dssp CCHHHH----HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-G------GGGCTTC
T ss_pred cChHHH----HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-H------HhCCCCC
Confidence 543100 12233455 66666666664 3331111123455666666666666533321111 1 1115666
Q ss_pred CeEecccCcccccccCCCcccCCCcccEEEEecC
Q 021510 245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGC 278 (311)
Q Consensus 245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c 278 (311)
++|++++|..+....... ...+++|++|++.+|
T Consensus 250 ~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 250 QHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI 282 (336)
T ss_dssp CEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred CEeeCCCCCCCCHHHHHH-HhcCCCCCEEeccCc
Confidence 666666665433221111 124666666666666
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.51 E-value=5.9e-13 Score=116.93 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=78.8
Q ss_pred CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510 155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ 234 (311)
Q Consensus 155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 234 (311)
++|++|++++|.++.+ .+..+..+++|+.|+++++ .+... +...+..+++|++|++++|. ++.++. ..
T Consensus 193 ~~L~~L~l~~n~i~~~-----~~~~l~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~lp~--~l-- 260 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAI-----ELEDLLRYSKLYRLGLGHN-QIRMI-ENGSLSFLPTLRELHLDNNK-LSRVPA--GL-- 260 (332)
T ss_dssp SSCSCCBCCSSCCCCC-----CTTSSTTCTTCSCCBCCSS-CCCCC-CTTGGGGCTTCCEEECCSSC-CCBCCT--TG--
T ss_pred CCCCEEECCCCcCCcc-----CHHHhcCCCCCCEEECCCC-cCCcC-ChhHhhCCCCCCEEECCCCc-CeecCh--hh--
Confidence 5777777777766654 1345677788888888885 45545 33336778888888888886 665532 12
Q ss_pred cCCcccCCccCeEecccCcccccccCCCccc-----CCCcccEEEEecCCCc--cccccccccCCCCCccccc
Q 021510 235 VIPYFVFPQLTTLKLQDLPKLRCLYPGMHSS-----EWPALEILLVYGCDKL--KIFAADLSQNNENDQLGIP 300 (311)
Q Consensus 235 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~-----~~~~L~~L~i~~c~~l--~~lp~~~~~~~~~~~~~~~ 300 (311)
..+++|+.|+++++ .++.++...... ..++|+.|++.++|-. ...|..+........+.++
T Consensus 261 ----~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 261 ----PDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp ----GGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred ----hcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcc
Confidence 22788888888874 566665433211 2466888888888744 2333333333334444443
No 45
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.51 E-value=2.9e-13 Score=123.90 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=59.5
Q ss_pred CCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccc
Q 021510 179 TFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCL 258 (311)
Q Consensus 179 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 258 (311)
.+..+++|++|+++++ .+....+. .+..+++|++|++++|. ++.+... . +..+++|+.|+++++ +++.+
T Consensus 294 ~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~-~------~~~l~~L~~L~Ls~N-~l~~~ 362 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQN-EINKIDDN-AFWGLTHLLKLNLSQNF-LGSIDSR-M------FENLDKLEVLDLSYN-HIRAL 362 (455)
T ss_dssp TTTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSC-CCEECGG-G------GTTCTTCCEEECCSS-CCCEE
T ss_pred hcccCCCCCEEECCCC-cccccChh-HhcCcccCCEEECCCCc-cCCcChh-H------hcCcccCCEEECCCC-ccccc
Confidence 3455566666666654 33333222 24556666666666664 4444211 1 112677777777765 34444
Q ss_pred cCCCcccCCCcccEEEEecCCCcccccccc-ccCCCCCccccccccc
Q 021510 259 YPGMHSSEWPALEILLVYGCDKLKIFAADL-SQNNENDQLGIPAQQL 304 (311)
Q Consensus 259 ~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~-~~~~~~~~~~~~~~~~ 304 (311)
.... ...+++|++|+++++ +++.+|.+. ........+.+..+.+
T Consensus 363 ~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 363 GDQS-FLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred Chhh-ccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCc
Confidence 3222 135677777777775 455555432 3344555566655543
No 46
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.50 E-value=2.8e-13 Score=124.60 Aligned_cols=103 Identities=21% Similarity=0.231 Sum_probs=52.1
Q ss_pred CCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccC
Q 021510 181 PRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYP 260 (311)
Q Consensus 181 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 260 (311)
+.+++|+.|+++++ .+..+ + .+..+++|++|++++|. +..+.. +..+++|+.|+++++ .++.++.
T Consensus 218 ~~l~~L~~L~l~~n-~l~~~-~--~l~~l~~L~~L~l~~n~-l~~~~~---------~~~l~~L~~L~l~~n-~l~~~~~ 282 (466)
T 1o6v_A 218 GILTNLDELSLNGN-QLKDI-G--TLASLTNLTDLDLANNQ-ISNLAP---------LSGLTKLTELKLGAN-QISNISP 282 (466)
T ss_dssp GGCTTCCEEECCSS-CCCCC-G--GGGGCTTCSEEECCSSC-CCCCGG---------GTTCTTCSEEECCSS-CCCCCGG
T ss_pred cccCCCCEEECCCC-Ccccc-h--hhhcCCCCCEEECCCCc-cccchh---------hhcCCCCCEEECCCC-ccCcccc
Confidence 34455555555554 23322 1 24455566666666654 333321 122667777777764 3333332
Q ss_pred CCcccCCCcccEEEEecCCCccccccccccCCCCCcccccccc
Q 021510 261 GMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQ 303 (311)
Q Consensus 261 ~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~ 303 (311)
...+++|++|++.+|. ++.++. +........+.+..++
T Consensus 283 ---~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 283 ---LAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp ---GTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSC
T ss_pred ---ccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCc
Confidence 1357778888887764 333332 3334444455554444
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.50 E-value=1.7e-13 Score=125.81 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=41.4
Q ss_pred CccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEcccc
Q 021510 4 CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCS 72 (311)
Q Consensus 4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 72 (311)
...+++|++|+++++. ++++ +++.+++|++|+++++ .++.+ + ++.+++|++|+++++.
T Consensus 81 ~~~l~~L~~L~Ls~N~-l~~~-----~~~~l~~L~~L~L~~N-~l~~l--~--~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNK-LTNL-----DVTPLTKLTYLNCDTN-KLTKL--D--VSQNPLLTYLNCARNT 138 (457)
T ss_dssp CTTCTTCSEEECCSSC-CSCC-----CCTTCTTCCEEECCSS-CCSCC--C--CTTCTTCCEEECTTSC
T ss_pred cccCCCCCEEECcCCC-Ccee-----ecCCCCcCCEEECCCC-cCCee--c--CCCCCcCCEEECCCCc
Confidence 3567888888888864 5553 2577888888888886 45554 1 5677888888887753
No 48
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=6e-13 Score=130.45 Aligned_cols=135 Identities=16% Similarity=0.129 Sum_probs=83.7
Q ss_pred cCCCccEEEeeeeeceeeeccCCC--CCCCCCCCcccEEEEecCCCCccccchHHHh--ccCCCcEEEEccccccceecc
Q 021510 153 ALPNLEVLEISEINVDQIWHYNHL--PVTFPRFQNLTRLIVWHCHKLKYIFSASMIR--SLKQLQRLEICSCEDLQEIIS 228 (311)
Q Consensus 153 ~l~~L~~L~l~~~~l~~i~~~~~~--p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~ 228 (311)
.+++|+.|++++|++..+...... +....++++|+.|++++| .+..+ |.. +. .+++|+.|++++|. ++.++.
T Consensus 695 ~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~l-p~~-l~~~~l~~L~~L~Ls~N~-L~~lp~ 770 (876)
T 4ecn_A 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSL-SDD-FRATTLPYLSNMDVSYNC-FSSFPT 770 (876)
T ss_dssp TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCC-CGG-GSTTTCTTCCEEECCSSC-CSSCCC
T ss_pred cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCccc-hHH-hhhccCCCcCEEEeCCCC-CCccch
Confidence 467888888888877655221110 001223448889998886 55555 544 43 78889999998886 665422
Q ss_pred cccccCcCCcccCCccCeEecccCc------ccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCccccccc
Q 021510 229 ENRTDQVIPYFVFPQLTTLKLQDLP------KLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQ 302 (311)
Q Consensus 229 ~~~~~~~~~~~~~~~L~~L~l~~c~------~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~ 302 (311)
... .+++|+.|++++++ -...++... ..+++|++|++++|.- ..+|..+. .....+.++.+
T Consensus 771 --~l~------~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l--~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 771 --QPL------NSSQLKAFGIRHQRDAEGNRILRQWPTGI--TTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADN 837 (876)
T ss_dssp --GGG------GCTTCCEEECCCCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSC
T ss_pred --hhh------cCCCCCEEECCCCCCcccccccccChHHH--hcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCC
Confidence 222 27888888887633 233444333 4678888888888754 77887654 34555666555
Q ss_pred cc
Q 021510 303 QL 304 (311)
Q Consensus 303 ~~ 304 (311)
.|
T Consensus 838 ~l 839 (876)
T 4ecn_A 838 PN 839 (876)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 49
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=8.3e-14 Score=119.01 Aligned_cols=206 Identities=16% Similarity=0.185 Sum_probs=145.7
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
..+++|++|++.++. ++. ...++.+++|++|+++++. +..+ +.+..+++|++|++++|. +..++.
T Consensus 38 ~~l~~L~~L~l~~~~-i~~----~~~l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~n~-l~~~~~----- 102 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-IKS----VQGIQYLPNVRYLALGGNK-LHDI---SALKELTNLTYLILTGNQ-LQSLPN----- 102 (272)
T ss_dssp HHHTTCCEEECTTSC-CCC----CTTGGGCTTCCEEECTTSC-CCCC---GGGTTCTTCCEEECTTSC-CCCCCT-----
T ss_pred ccccceeeeeeCCCC-ccc----ccccccCCCCcEEECCCCC-CCCc---hhhcCCCCCCEEECCCCc-cCccCh-----
Confidence 456889999999864 555 3456889999999999974 5554 467889999999999974 444432
Q ss_pred ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE 164 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (311)
..+..+++|++|+++++ .++.++.. .+..+++|++|++++
T Consensus 103 ---~~~~~l~~L~~L~L~~n-~l~~~~~~------------------------------------~~~~l~~L~~L~L~~ 142 (272)
T 3rfs_A 103 ---GVFDKLTNLKELVLVEN-QLQSLPDG------------------------------------VFDKLTNLTYLNLAH 142 (272)
T ss_dssp ---TTTTTCTTCCEEECTTS-CCCCCCTT------------------------------------TTTTCTTCCEEECCS
T ss_pred ---hHhcCCcCCCEEECCCC-cCCccCHH------------------------------------HhccCCCCCEEECCC
Confidence 12356799999999987 45443321 123478999999999
Q ss_pred eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510 165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL 244 (311)
Q Consensus 165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 244 (311)
|+++.+ .+..+..+++|+.|+++++ .++.+ +...+..+++|++|++++|. ++.++.. . +..+++|
T Consensus 143 n~l~~~-----~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~------~~~l~~L 207 (272)
T 3rfs_A 143 NQLQSL-----PKGVFDKLTNLTELDLSYN-QLQSL-PEGVFDKLTQLKDLRLYQNQ-LKSVPDG-V------FDRLTSL 207 (272)
T ss_dssp SCCCCC-----CTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CSCCCTT-T------TTTCTTC
T ss_pred CccCcc-----CHHHhccCccCCEEECCCC-CcCcc-CHHHhcCCccCCEEECCCCc-CCccCHH-H------HhCCcCC
Confidence 988765 1234678899999999996 55655 44446789999999999997 6665421 1 1228899
Q ss_pred CeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccc
Q 021510 245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLS 289 (311)
Q Consensus 245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~ 289 (311)
+.|++++++-. ..++.|+.+++..+.--..+|..+.
T Consensus 208 ~~L~l~~N~~~---------~~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 208 QYIWLHDNPWD---------CTCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CEEECCSSCBC---------CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred CEEEccCCCcc---------ccCcHHHHHHHHHHhCCCcccCccc
Confidence 99999887432 2466777777766555555665433
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=2.6e-13 Score=128.70 Aligned_cols=92 Identities=15% Similarity=0.076 Sum_probs=62.4
Q ss_pred CccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccc
Q 021510 4 CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEE 83 (311)
Q Consensus 4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 83 (311)
...+++|++|+|+++. ++.+. +..++.+++|++|++++| .++.+ ++..+..+++|++|++++|. +..+++
T Consensus 95 ~~~l~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~Ls~N~-l~~~~~---- 164 (597)
T 3oja_B 95 FAYAHTIQKLYMGFNA-IRYLP--PHVFQNVPLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLSMSNNN-LERIED---- 164 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCCCC--TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCT----
T ss_pred hcCCCCCCEEECCCCc-CCCCC--HHHHcCCCCCCEEEeeCC-CCCCC-CHHHhccCCCCCEEEeeCCc-CCCCCh----
Confidence 3567899999999864 66642 234578899999999987 55554 23445788999999999874 333331
Q ss_pred cccccceeeecccceEecCCCCCcccc
Q 021510 84 VDNAIEKIEFAQLRSLSLGNLPEVTSF 110 (311)
Q Consensus 84 ~~~~~~~~~l~~L~~L~l~~~~~l~~l 110 (311)
..+..+++|++|+++++ .++.+
T Consensus 165 ----~~~~~l~~L~~L~L~~N-~l~~~ 186 (597)
T 3oja_B 165 ----DTFQATTSLQNLQLSSN-RLTHV 186 (597)
T ss_dssp ----TTTTTCTTCCEEECTTS-CCSBC
T ss_pred ----hhhhcCCcCcEEECcCC-CCCCc
Confidence 12446778888888776 34433
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.48 E-value=4.1e-13 Score=126.33 Aligned_cols=227 Identities=17% Similarity=0.144 Sum_probs=131.4
Q ss_pred cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510 9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI 88 (311)
Q Consensus 9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 88 (311)
+|++|++.++. +..+ + ...+++|++|++.++...... . ...+++|++|+++++.- ...... ..
T Consensus 305 ~L~~L~l~~n~-~~~l----~-~~~l~~L~~L~l~~n~~~~~~---~-~~~~~~L~~L~l~~n~l-~~~~~~------~~ 367 (570)
T 2z63_A 305 GWQHLELVNCK-FGQF----P-TLKLKSLKRLTFTSNKGGNAF---S-EVDLPSLEFLDLSRNGL-SFKGCC------SQ 367 (570)
T ss_dssp CCSEEEEESCB-CSSC----C-BCBCSSCCEEEEESCBSCCBC---C-CCBCTTCCEEECCSSCC-BEEEEE------EH
T ss_pred CccEEeeccCc-cccc----C-cccccccCEEeCcCCcccccc---c-cccCCCCCEEeCcCCcc-Cccccc------cc
Confidence 78888888864 4442 1 256778888888876543322 1 15677888888877642 221100 01
Q ss_pred ceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeece
Q 021510 89 EKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVD 168 (311)
Q Consensus 89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 168 (311)
.+..+++|++|+++++ .+..++.. .. ....+..+.+.. ....... ....+..+++|++|++++|.+.
T Consensus 368 ~~~~~~~L~~L~l~~n-~l~~~~~~-~~-------~l~~L~~L~l~~---n~l~~~~-~~~~~~~l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFN-GVITMSSN-FL-------GLEQLEHLDFQH---SNLKQMS-EFSVFLSLRNLIYLDISHTHTR 434 (570)
T ss_dssp HHHTCSCCCEEECCSC-SEEEEEEE-EE-------TCTTCCEEECTT---SEEESCT-TSCTTTTCTTCCEEECTTSCCE
T ss_pred cccccCccCEEECCCC-cccccccc-cc-------ccCCCCEEEccC---Ccccccc-chhhhhcCCCCCEEeCcCCccc
Confidence 2335677777777776 33333321 00 000111111111 0010000 0112345788999999988776
Q ss_pred eeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEe
Q 021510 169 QIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLK 248 (311)
Q Consensus 169 ~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 248 (311)
.+ .|..+..+++|+.|++.+|.......|. .+..+++|++|++++|. ++.+... .. ..+++|+.|+
T Consensus 435 ~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~-l~~~~~~-~~------~~l~~L~~L~ 500 (570)
T 2z63_A 435 VA-----FNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQ-LEQLSPT-AF------NSLSSLQVLN 500 (570)
T ss_dssp EC-----CTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSC-CCEECTT-TT------TTCTTCCEEE
T ss_pred cc-----chhhhhcCCcCcEEECcCCcCccccchh-hhhcccCCCEEECCCCc-cccCChh-hh------hcccCCCEEe
Confidence 65 2455678889999999887543222243 36778899999999887 6655321 11 1278899999
Q ss_pred cccCcccccccCCCcccCCCcccEEEEecCCCc
Q 021510 249 LQDLPKLRCLYPGMHSSEWPALEILLVYGCDKL 281 (311)
Q Consensus 249 l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l 281 (311)
+++| +++.++.... ..+++|++|++.+++--
T Consensus 501 l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 501 MASN-QLKSVPDGIF-DRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CCSS-CCSCCCTTTT-TTCTTCCEEECCSSCBC
T ss_pred CCCC-cCCCCCHHHh-hcccCCcEEEecCCccc
Confidence 9886 5666654331 46788999999886533
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.48 E-value=1.3e-12 Score=114.60 Aligned_cols=228 Identities=11% Similarity=0.124 Sum_probs=141.6
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
..+++|++|+++++. ++.+ .+..++.+++|++|+++++ .++.+ +.. ..++|++|+++++. +..++.
T Consensus 73 ~~l~~L~~L~L~~n~-l~~~--~~~~~~~l~~L~~L~Ls~n-~l~~l--~~~--~~~~L~~L~l~~n~-l~~~~~----- 138 (330)
T 1xku_A 73 KNLKNLHTLILINNK-ISKI--SPGAFAPLVKLERLYLSKN-QLKEL--PEK--MPKTLQELRVHENE-ITKVRK----- 138 (330)
T ss_dssp TTCTTCCEEECCSSC-CCCB--CTTTTTTCTTCCEEECCSS-CCSBC--CSS--CCTTCCEEECCSSC-CCBBCH-----
T ss_pred ccCCCCCEEECCCCc-CCee--CHHHhcCCCCCCEEECCCC-cCCcc--Chh--hcccccEEECCCCc-ccccCH-----
Confidence 467899999999864 5553 1345688999999999986 45554 222 23789999998864 333321
Q ss_pred ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE 164 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (311)
..+..+++|++|+++++. ++........ ......+..+.+.. ..+..-+ ....++|++|++++
T Consensus 139 ---~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-----~~~l~~L~~L~l~~---n~l~~l~-----~~~~~~L~~L~l~~ 201 (330)
T 1xku_A 139 ---SVFNGLNQMIVVELGTNP-LKSSGIENGA-----FQGMKKLSYIRIAD---TNITTIP-----QGLPPSLTELHLDG 201 (330)
T ss_dssp ---HHHTTCTTCCEEECCSSC-CCGGGBCTTG-----GGGCTTCCEEECCS---SCCCSCC-----SSCCTTCSEEECTT
T ss_pred ---hHhcCCccccEEECCCCc-CCccCcChhh-----ccCCCCcCEEECCC---CccccCC-----ccccccCCEEECCC
Confidence 123467888888888763 3221110000 00011111122211 1111100 01137899999999
Q ss_pred eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510 165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL 244 (311)
Q Consensus 165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 244 (311)
|+++.+ .|..+..+++|++|+++++ .+... +...+..+++|++|++++|. ++.++. ... .+++|
T Consensus 202 n~l~~~-----~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~lp~--~l~------~l~~L 265 (330)
T 1xku_A 202 NKITKV-----DAASLKGLNNLAKLGLSFN-SISAV-DNGSLANTPHLRELHLNNNK-LVKVPG--GLA------DHKYI 265 (330)
T ss_dssp SCCCEE-----CTGGGTTCTTCCEEECCSS-CCCEE-CTTTGGGSTTCCEEECCSSC-CSSCCT--TTT------TCSSC
T ss_pred CcCCcc-----CHHHhcCCCCCCEEECCCC-cCcee-ChhhccCCCCCCEEECCCCc-CccCCh--hhc------cCCCc
Confidence 988776 2345778889999999986 45555 33347789999999999996 665532 222 28899
Q ss_pred CeEecccCcccccccCCCcc-----cCCCcccEEEEecCCC
Q 021510 245 TTLKLQDLPKLRCLYPGMHS-----SEWPALEILLVYGCDK 280 (311)
Q Consensus 245 ~~L~l~~c~~L~~l~~~~~~-----~~~~~L~~L~i~~c~~ 280 (311)
+.|+++++ .++.++...+. ...++++.|++.+.|-
T Consensus 266 ~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 266 QVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence 99999985 56666544321 1347788999998874
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.48 E-value=5.9e-13 Score=122.12 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=56.0
Q ss_pred CccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccc
Q 021510 4 CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEE 83 (311)
Q Consensus 4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 83 (311)
...+++|++|+++++. ++++ +++.+++|++|+++++. ++.+ + ++.+++|++|+++++. +..++
T Consensus 60 l~~l~~L~~L~Ls~n~-l~~~-----~~~~l~~L~~L~Ls~N~-l~~~---~-~~~l~~L~~L~L~~N~-l~~l~----- 122 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNN-ITTL-----DLSQNTNLTYLACDSNK-LTNL---D-VTPLTKLTYLNCDTNK-LTKLD----- 122 (457)
T ss_dssp GGGCTTCSEEECCSSC-CSCC-----CCTTCTTCSEEECCSSC-CSCC---C-CTTCTTCCEEECCSSC-CSCCC-----
T ss_pred hcccCCCCEEEccCCc-CCeE-----ccccCCCCCEEECcCCC-Ccee---e-cCCCCcCCEEECCCCc-CCeec-----
Confidence 3567899999999964 6664 26889999999999974 6665 2 6789999999999873 43332
Q ss_pred cccccceeeecccceEecCCC
Q 021510 84 VDNAIEKIEFAQLRSLSLGNL 104 (311)
Q Consensus 84 ~~~~~~~~~l~~L~~L~l~~~ 104 (311)
+..+++|++|+++++
T Consensus 123 ------~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 123 ------VSQNPLLTYLNCARN 137 (457)
T ss_dssp ------CTTCTTCCEEECTTS
T ss_pred ------CCCCCcCCEEECCCC
Confidence 234555666665554
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.48 E-value=9.3e-13 Score=121.13 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=52.1
Q ss_pred cCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccc
Q 021510 153 ALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRT 232 (311)
Q Consensus 153 ~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 232 (311)
.+++|++|++++|+++.+ ..+..+++|+.|++++| .+....+ +..+++|++|++++|. ++.+. .
T Consensus 285 ~l~~L~~L~L~~n~l~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---~- 348 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDI-------SPISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNK-VSDVS---S- 348 (466)
T ss_dssp TCTTCSEEECCSSCCSCC-------GGGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSC-CCCCG---G-
T ss_pred CCCccCeEEcCCCcccCc-------hhhcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCc-cCCch---h-
Confidence 345555555555544443 11345556666666664 2333312 3456666666666664 44331 1
Q ss_pred cCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 233 DQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 233 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
+..+++|+.|++++|+ +..+.. . ..+++|++|++.+|+
T Consensus 349 -----l~~l~~L~~L~l~~n~-l~~~~~-~--~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 349 -----LANLTNINWLSAGHNQ-ISDLTP-L--ANLTRITQLGLNDQA 386 (466)
T ss_dssp -----GTTCTTCCEEECCSSC-CCBCGG-G--TTCTTCCEEECCCEE
T ss_pred -----hccCCCCCEEeCCCCc-cCccch-h--hcCCCCCEEeccCCc
Confidence 1126666667666653 333322 1 356677777776654
No 55
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.46 E-value=7.9e-13 Score=114.04 Aligned_cols=201 Identities=18% Similarity=0.189 Sum_probs=146.9
Q ss_pred ccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCcccc
Q 021510 31 VESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSF 110 (311)
Q Consensus 31 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 110 (311)
++.+++++++++.++ .++.+ |..+ .+++++|+++++. +..+.. ..+..+++|++|+++++ .++.+
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~i--p~~~--~~~l~~L~L~~N~-l~~~~~--------~~~~~l~~L~~L~L~~n-~l~~~ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTAL--PPDL--PKDTTILHLSENL-LYTFSL--------ATLMPYTRLTQLNLDRA-ELTKL 70 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSC--CSCC--CTTCCEEECTTSC-CSEEEG--------GGGTTCTTCCEEECTTS-CCCEE
T ss_pred ccccCCccEEECCCC-CCCcC--CCCC--CCCCCEEEcCCCc-CCccCH--------HHhhcCCCCCEEECCCC-ccCcc
Confidence 367889999999874 56665 2222 4789999999965 444432 23457899999999987 45554
Q ss_pred ccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEE
Q 021510 111 CCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLI 190 (311)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~ 190 (311)
+.. ..+++|++|++++|+++.+ |..+..+++|+.|+
T Consensus 71 ~~~--------------------------------------~~l~~L~~L~Ls~N~l~~l------~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 71 QVD--------------------------------------GTLPVLGTLDLSHNQLQSL------PLLGQTLPALTVLD 106 (290)
T ss_dssp ECC--------------------------------------SCCTTCCEEECCSSCCSSC------CCCTTTCTTCCEEE
T ss_pred cCC--------------------------------------CCCCcCCEEECCCCcCCcC------chhhccCCCCCEEE
Confidence 331 2378999999999988865 56678899999999
Q ss_pred EecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcc
Q 021510 191 VWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPAL 270 (311)
Q Consensus 191 i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L 270 (311)
++++ .++.+ +...+..+++|++|+++++. ++.++.. . +..+++|+.|+++++ +++.++.+.. ..+++|
T Consensus 107 l~~N-~l~~l-~~~~~~~l~~L~~L~L~~N~-l~~~~~~--~-----~~~l~~L~~L~L~~N-~l~~l~~~~~-~~l~~L 174 (290)
T 1p9a_G 107 VSFN-RLTSL-PLGALRGLGELQELYLKGNE-LKTLPPG--L-----LTPTPKLEKLSLANN-NLTELPAGLL-NGLENL 174 (290)
T ss_dssp CCSS-CCCCC-CSSTTTTCTTCCEEECTTSC-CCCCCTT--T-----TTTCTTCCEEECTTS-CCSCCCTTTT-TTCTTC
T ss_pred CCCC-cCccc-CHHHHcCCCCCCEEECCCCC-CCccChh--h-----cccccCCCEEECCCC-cCCccCHHHh-cCcCCC
Confidence 9995 66666 43447889999999999997 7766421 1 122889999999984 6778776542 368999
Q ss_pred cEEEEecCCCccccccccccCCCCCcccccccc
Q 021510 271 EILLVYGCDKLKIFAADLSQNNENDQLGIPAQQ 303 (311)
Q Consensus 271 ~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~ 303 (311)
++|+++++ +++.+|.+.........+.+.++.
T Consensus 175 ~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 175 DTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 99999886 577888877766666666665554
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.46 E-value=9.4e-13 Score=122.64 Aligned_cols=67 Identities=21% Similarity=0.231 Sum_probs=45.5
Q ss_pred ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccc-hHHHhccCCCcEEEEccccccce
Q 021510 152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFS-ASMIRSLKQLQRLEICSCEDLQE 225 (311)
Q Consensus 152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~ 225 (311)
..+++|++|++++|+++.. .|..+..+++|++|+++++ .+..+.. ...+..+++|++|++++|. +..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~ 388 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDT-----VFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS-VSY 388 (520)
T ss_dssp SSCCCCCEEECCSSCCCTT-----TTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-CBC
T ss_pred hhCCcccEEEeECCccChh-----hhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc-CCc
Confidence 3466777777777766542 2456778889999999886 3443211 1236788899999999887 554
No 57
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.45 E-value=9.7e-13 Score=123.26 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=35.2
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINC 71 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 71 (311)
..+++|++|+++++. ++++. +..++.+++|++|+++++ +++.+. +..+..+++|++|+++++
T Consensus 23 ~~~~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 23 GLTAAMKSLDLSFNK-ITYIG--HGDLRACANLQVLILKSS-RINTIE-GDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp CCCTTCCEEECCSSC-CCEEC--SSTTSSCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECTTS
T ss_pred cCCCCccEEECcCCc-cCccC--hhhhhcCCcccEEECCCC-CcCccC-hhhccccccCCEEECCCC
Confidence 334577777777753 54431 233466667777777665 344431 234556666666666665
No 58
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.44 E-value=1.6e-12 Score=110.88 Aligned_cols=181 Identities=18% Similarity=0.189 Sum_probs=129.9
Q ss_pred CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccc
Q 021510 7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDN 86 (311)
Q Consensus 7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 86 (311)
.+++++|+++++. ++.+. ...++.+++|++|+++++ .++.+ ++..+..+++|++|+++++. +..++.
T Consensus 36 ~~~l~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n-~l~~i-~~~~~~~l~~L~~L~l~~n~-l~~~~~------- 102 (270)
T 2o6q_A 36 PADTKKLDLQSNK-LSSLP--SKAFHRLTKLRLLYLNDN-KLQTL-PAGIFKELKNLETLWVTDNK-LQALPI------- 102 (270)
T ss_dssp CTTCSEEECCSSC-CSCCC--TTSSSSCTTCCEEECCSS-CCSCC-CTTTTSSCTTCCEEECCSSC-CCCCCT-------
T ss_pred CCCCCEEECcCCC-CCeeC--HHHhcCCCCCCEEECCCC-ccCee-ChhhhcCCCCCCEEECCCCc-CCcCCH-------
Confidence 4579999999964 66642 235688999999999986 45554 23455789999999999864 444442
Q ss_pred ccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeee
Q 021510 87 AIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEIN 166 (311)
Q Consensus 87 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (311)
..+..+++|++|+++++ .++.++.. .+..+++|++|++++|+
T Consensus 103 -~~~~~l~~L~~L~l~~n-~l~~~~~~------------------------------------~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 103 -GVFDQLVNLAELRLDRN-QLKSLPPR------------------------------------VFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp -TTTTTCSSCCEEECCSS-CCCCCCTT------------------------------------TTTTCTTCCEEECCSSC
T ss_pred -hHcccccCCCEEECCCC-ccCeeCHH------------------------------------HhCcCcCCCEEECCCCc
Confidence 12356789999999986 44443321 12347999999999998
Q ss_pred ceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCe
Q 021510 167 VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTT 246 (311)
Q Consensus 167 l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~ 246 (311)
++.+. +..+..+++|++|+++++ .+..+ +...+..+++|++|+++++. ++.+... .+..+++|+.
T Consensus 145 l~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~-------~~~~l~~L~~ 209 (270)
T 2o6q_A 145 LQSLP-----KGVFDKLTSLKELRLYNN-QLKRV-PEGAFDKLTELKTLKLDNNQ-LKRVPEG-------AFDSLEKLKM 209 (270)
T ss_dssp CCCCC-----TTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSC-CSCCCTT-------TTTTCTTCCE
T ss_pred CCccC-----HhHccCCcccceeEecCC-cCcEe-ChhHhccCCCcCEEECCCCc-CCcCCHH-------HhccccCCCE
Confidence 88761 233678899999999996 55655 44447789999999999996 7765321 1222889999
Q ss_pred EecccCc
Q 021510 247 LKLQDLP 253 (311)
Q Consensus 247 L~l~~c~ 253 (311)
|++.+++
T Consensus 210 L~l~~N~ 216 (270)
T 2o6q_A 210 LQLQENP 216 (270)
T ss_dssp EECCSSC
T ss_pred EEecCCC
Confidence 9998765
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.44 E-value=8.7e-13 Score=124.05 Aligned_cols=247 Identities=17% Similarity=0.224 Sum_probs=141.9
Q ss_pred CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccc
Q 021510 7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDN 86 (311)
Q Consensus 7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 86 (311)
+++|++|++.++. ++++ +..+..+ +|++|++++|. +..+ +. ..+++|++|++.++.....++
T Consensus 281 l~~L~~L~l~~~~-l~~l---~~~~~~~-~L~~L~l~~n~-~~~l--~~--~~l~~L~~L~l~~n~~~~~~~-------- 342 (570)
T 2z63_A 281 LTNVSSFSLVSVT-IERV---KDFSYNF-GWQHLELVNCK-FGQF--PT--LKLKSLKRLTFTSNKGGNAFS-------- 342 (570)
T ss_dssp GTTCSEEEEESCE-ECSC---CBCCSCC-CCSEEEEESCB-CSSC--CB--CBCSSCCEEEEESCBSCCBCC--------
T ss_pred cCcccEEEecCcc-chhh---hhhhccC-CccEEeeccCc-cccc--Cc--ccccccCEEeCcCCccccccc--------
Confidence 4666666666653 4443 2333445 67777777653 3333 11 356677777777654332221
Q ss_pred ccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeee
Q 021510 87 AIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEIN 166 (311)
Q Consensus 87 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (311)
...+++|++|+++++ .++.......... ....+..+.+.. ..+..-. ..+..+++|++|++++|.
T Consensus 343 ---~~~~~~L~~L~l~~n-~l~~~~~~~~~~~-----~~~~L~~L~l~~---n~l~~~~---~~~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 343 ---EVDLPSLEFLDLSRN-GLSFKGCCSQSDF-----GTTSLKYLDLSF---NGVITMS---SNFLGLEQLEHLDFQHSN 407 (570)
T ss_dssp ---CCBCTTCCEEECCSS-CCBEEEEEEHHHH-----TCSCCCEEECCS---CSEEEEE---EEEETCTTCCEEECTTSE
T ss_pred ---cccCCCCCEEeCcCC-ccCcccccccccc-----ccCccCEEECCC---Ccccccc---ccccccCCCCEEEccCCc
Confidence 146778888888776 3332210000000 000111122211 1111111 113457889999999887
Q ss_pred ceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccc-eecccccccCcCCcccCCccC
Q 021510 167 VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQ-EIISENRTDQVIPYFVFPQLT 245 (311)
Q Consensus 167 l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~~L~ 245 (311)
+..... +..+..+++|++|++++|. +....+. .+..+++|++|++++|. +. ..+ +... ..+++|+
T Consensus 408 l~~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-p~~~------~~l~~L~ 473 (570)
T 2z63_A 408 LKQMSE----FSVFLSLRNLIYLDISHTH-TRVAFNG-IFNGLSSLEVLKMAGNS-FQENFL-PDIF------TELRNLT 473 (570)
T ss_dssp EESCTT----SCTTTTCTTCCEEECTTSC-CEECCTT-TTTTCTTCCEEECTTCE-EGGGEE-CSCC------TTCTTCC
T ss_pred cccccc----hhhhhcCCCCCEEeCcCCc-ccccchh-hhhcCCcCcEEECcCCc-Cccccc-hhhh------hcccCCC
Confidence 765411 1346788999999999974 4434243 36789999999999997 43 221 1122 2289999
Q ss_pred eEecccCcccccc-cCCCcccCCCcccEEEEecCCCcccccc-ccccCCCCCccccccccc
Q 021510 246 TLKLQDLPKLRCL-YPGMHSSEWPALEILLVYGCDKLKIFAA-DLSQNNENDQLGIPAQQL 304 (311)
Q Consensus 246 ~L~l~~c~~L~~l-~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~~~~~~~~~~~~~~~~~~ 304 (311)
.|++++|. ++.+ +... ..+++|++|++++| ++..++. .+........+.+..+.+
T Consensus 474 ~L~l~~n~-l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 474 FLDLSQCQ-LEQLSPTAF--NSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp EEECTTSC-CCEECTTTT--TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECCCCc-cccCChhhh--hcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcc
Confidence 99999974 5555 3333 46899999999998 5665554 345555667777777654
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.44 E-value=4.2e-12 Score=120.40 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=32.3
Q ss_pred CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccc
Q 021510 7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINC 71 (311)
Q Consensus 7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 71 (311)
.++|++|+++++ +++.+ + . .+++|++|++++|. ++.+ +. .+++|++|+++++
T Consensus 60 ~~~L~~L~L~~N-~l~~l---p-~--~l~~L~~L~Ls~N~-l~~l--p~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 60 PAHITTLVIPDN-NLTSL---P-A--LPPELRTLEVSGNQ-LTSL--PV---LPPGLLELSIFSN 111 (622)
T ss_dssp CTTCSEEEECSC-CCSCC---C-C--CCTTCCEEEECSCC-CSCC--CC---CCTTCCEEEECSC
T ss_pred CCCCcEEEecCC-CCCCC---C-C--cCCCCCEEEcCCCc-CCcC--CC---CCCCCCEEECcCC
Confidence 367777777775 35553 1 1 45777777777753 5544 22 5677777777765
No 61
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=2.1e-14 Score=126.26 Aligned_cols=217 Identities=20% Similarity=0.166 Sum_probs=140.9
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccce--eccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKE--IFSIGE 82 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~--~~~~~~ 82 (311)
..+++|++|+++++. +.... .+..++.+++|++|++++|. +.... +..+..+++|++|++++|..+.. ++
T Consensus 90 ~~~~~L~~L~L~~~~-l~~~~-~~~~~~~~~~L~~L~L~~~~-l~~~~-~~~l~~~~~L~~L~L~~~~~l~~~~l~---- 161 (336)
T 2ast_B 90 FSPFRVQHMDLSNSV-IEVST-LHGILSQCSKLQNLSLEGLR-LSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQ---- 161 (336)
T ss_dssp CCCBCCCEEECTTCE-ECHHH-HHHHHTTBCCCSEEECTTCB-CCHHH-HHHHTTCTTCSEEECTTCBSCCHHHHH----
T ss_pred ccCCCCCEEEccCCC-cCHHH-HHHHHhhCCCCCEEeCcCcc-cCHHH-HHHHhcCCCCCEEECCCCCCCCHHHHH----
Confidence 457999999999975 44310 12345788999999999984 44322 45667799999999999966553 22
Q ss_pred ccccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCC-CccEEE
Q 021510 83 EVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALP-NLEVLE 161 (311)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~-~L~~L~ 161 (311)
..+..+++|++|++++|..+++... ......++ +|++|+
T Consensus 162 -----~~~~~~~~L~~L~l~~~~~l~~~~~-----------------------------------~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 162 -----TLLSSCSRLDELNLSWCFDFTEKHV-----------------------------------QVAVAHVSETITQLN 201 (336)
T ss_dssp -----HHHHHCTTCCEEECCCCTTCCHHHH-----------------------------------HHHHHHSCTTCCEEE
T ss_pred -----HHHhcCCCCCEEcCCCCCCcChHHH-----------------------------------HHHHHhcccCCCEEE
Confidence 1245689999999999977664211 01123368 999999
Q ss_pred eeee--eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcc
Q 021510 162 ISEI--NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYF 239 (311)
Q Consensus 162 l~~~--~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 239 (311)
+++| .++.. ..+..+..+++|++|++++|..++...+. .+..+++|++|++++|..+..... ..+.
T Consensus 202 l~~~~~~~~~~----~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-------~~l~ 269 (336)
T 2ast_B 202 LSGYRKNLQKS----DLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETL-------LELG 269 (336)
T ss_dssp CCSCGGGSCHH----HHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGG-------GGGG
T ss_pred eCCCcccCCHH----HHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHH-------HHHh
Confidence 9999 34311 01223456789999999999766654343 367889999999999974432210 1112
Q ss_pred cCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccc-cccc
Q 021510 240 VFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKI-FAAD 287 (311)
Q Consensus 240 ~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~-lp~~ 287 (311)
.+++|+.|++++| + +......-...+..|++ +|.++.. .|..
T Consensus 270 ~~~~L~~L~l~~~--i---~~~~~~~l~~~l~~L~l-~~n~l~~~~~~~ 312 (336)
T 2ast_B 270 EIPTLKTLQVFGI--V---PDGTLQLLKEALPHLQI-NCSHFTTIARPT 312 (336)
T ss_dssp GCTTCCEEECTTS--S---CTTCHHHHHHHSTTSEE-SCCCSCCTTCSS
T ss_pred cCCCCCEEeccCc--c---CHHHHHHHHhhCcceEE-ecccCccccCCc
Confidence 3899999999998 3 22221111123555556 5566653 4433
No 62
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.43 E-value=1.1e-11 Score=122.17 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=68.2
Q ss_pred CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510 155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ 234 (311)
Q Consensus 155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 234 (311)
++|+.|++++|.+..+ .+..+..+++|+.|++.++ .+....+. .+..+++|++|++++|. ++.+... .
T Consensus 266 ~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~-~--- 333 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL-----NSRVFETLKDLKVLNLAYN-KINKIADE-AFYGLDNLQVLNLSYNL-LGELYSS-N--- 333 (844)
T ss_dssp SCCCEEECTTCCCCEE-----CSCCSSSCCCCCEEEEESC-CCCEECTT-TTTTCSSCCEEEEESCC-CSCCCSC-S---
T ss_pred CCccEEECCCCccccc-----ChhhhhcCCCCCEEECCCC-cCCCCChH-HhcCCCCCCEEECCCCC-CCccCHH-H---
Confidence 6788888888876665 2345677788888888885 44444233 36778888888888876 5544221 1
Q ss_pred cCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 235 VIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 235 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
+..+++|+.|+++++ .++.++.... ..+++|++|+++++.
T Consensus 334 ---~~~l~~L~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 334 ---FYGLPKVAYIDLQKN-HIAIIQDQTF-KFLEKLQTLDLRDNA 373 (844)
T ss_dssp ---CSSCTTCCEEECCSC-CCCCCCSSCS-CSCCCCCEEEEETCC
T ss_pred ---hcCCCCCCEEECCCC-CCCccChhhh-cCCCCCCEEECCCCC
Confidence 122777788877775 4555543321 356777777776653
No 63
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.43 E-value=8.1e-12 Score=123.06 Aligned_cols=86 Identities=14% Similarity=0.018 Sum_probs=64.5
Q ss_pred cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510 6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD 85 (311)
Q Consensus 6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 85 (311)
-.++|++|+|+++. ++.+. +..++.+++|++|++++|.....+ ++..+.++++|++|+++++. +..+.+
T Consensus 22 lp~~l~~LdLs~N~-i~~i~--~~~~~~l~~L~~LdLs~n~~~~~i-~~~~f~~L~~L~~L~Ls~N~-l~~~~p------ 90 (844)
T 3j0a_A 22 VLNTTERLLLSFNY-IRTVT--ASSFPFLEQLQLLELGSQYTPLTI-DKEAFRNLPNLRILDLGSSK-IYFLHP------ 90 (844)
T ss_dssp SCTTCCEEEEESCC-CCEEC--SSSCSSCCSCSEEEECTTCCCCEE-CTTTTSSCTTCCEEECTTCC-CCEECT------
T ss_pred CCCCcCEEECCCCc-CCccC--hhHCcccccCeEEeCCCCCCcccc-CHHHhcCCCCCCEEECCCCc-CcccCH------
Confidence 45789999999964 66642 345688999999999998665554 24667889999999999874 444321
Q ss_pred cccceeeecccceEecCCC
Q 021510 86 NAIEKIEFAQLRSLSLGNL 104 (311)
Q Consensus 86 ~~~~~~~l~~L~~L~l~~~ 104 (311)
..+..+++|++|+++++
T Consensus 91 --~~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 91 --DAFQGLFHLFELRLYFC 107 (844)
T ss_dssp --TSSCSCSSCCCEECTTC
T ss_pred --hHccCCcccCEeeCcCC
Confidence 24567899999999987
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.43 E-value=1.1e-12 Score=114.63 Aligned_cols=219 Identities=15% Similarity=0.129 Sum_probs=151.9
Q ss_pred cCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccc
Q 021510 32 ESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFC 111 (311)
Q Consensus 32 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 111 (311)
..+++|++|+++++ +++.+ ++..+..+++|++|+++++. +...+ .+..+++|++|+++++ .++.++
T Consensus 31 ~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~----------~~~~l~~L~~L~Ls~n-~l~~l~ 96 (317)
T 3o53_A 31 QSAWNVKELDLSGN-PLSQI-SAADLAPFTKLELLNLSSNV-LYETL----------DLESLSTLRTLDLNNN-YVQELL 96 (317)
T ss_dssp TTGGGCSEEECTTS-CCCCC-CHHHHTTCTTCCEEECTTSC-CEEEE----------EETTCTTCCEEECCSS-EEEEEE
T ss_pred ccCCCCCEEECcCC-ccCcC-CHHHhhCCCcCCEEECCCCc-CCcch----------hhhhcCCCCEEECcCC-cccccc
Confidence 45679999999997 56654 24577899999999999975 33333 2456899999999987 465554
Q ss_pred cCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEE
Q 021510 112 CEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIV 191 (311)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i 191 (311)
.. ..+..+.+.. ..+..- ....+++|++|++++|+++.+. +..+..+++|++|++
T Consensus 97 ~~------------~~L~~L~l~~---n~l~~~-----~~~~~~~L~~L~l~~N~l~~~~-----~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 97 VG------------PSIETLHAAN---NNISRV-----SCSRGQGKKNIYLANNKITMLR-----DLDEGCRSRVQYLDL 151 (317)
T ss_dssp EC------------TTCCEEECCS---SCCSEE-----EECCCSSCEEEECCSSCCCSGG-----GBCTGGGSSEEEEEC
T ss_pred CC------------CCcCEEECCC---CccCCc-----CccccCCCCEEECCCCCCCCcc-----chhhhccCCCCEEEC
Confidence 31 0111122211 111110 0123688999999999877652 234567889999999
Q ss_pred ecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCccc
Q 021510 192 WHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALE 271 (311)
Q Consensus 192 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~ 271 (311)
+++ .+....+..+...+++|++|++++|. ++.+.. .. .+++|+.|+++++ +++.++... ..+++|+
T Consensus 152 s~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---~~------~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~ 217 (317)
T 3o53_A 152 KLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG---QV------VFAKLKTLDLSSN-KLAFMGPEF--QSAAGVT 217 (317)
T ss_dssp TTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC---CC------CCTTCCEEECCSS-CCCEECGGG--GGGTTCS
T ss_pred CCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccccc---cc------ccccCCEEECCCC-cCCcchhhh--cccCccc
Confidence 996 55555344444578999999999997 776632 11 2899999999985 667776553 5689999
Q ss_pred EEEEecCCCccccccccccCCCCCccccccccc
Q 021510 272 ILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL 304 (311)
Q Consensus 272 ~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~ 304 (311)
+|++++| +++.+|..+........+.+..+.+
T Consensus 218 ~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 218 WISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp EEECTTS-CCCEECTTCCCCTTCCEEECTTCCC
T ss_pred EEECcCC-cccchhhHhhcCCCCCEEEccCCCc
Confidence 9999997 6778887776666777777776654
No 65
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.43 E-value=2.7e-12 Score=123.39 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=25.7
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCC
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCD 46 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~ 46 (311)
..+++|++|+++++. +..+ ....++.+++|++|++++|.
T Consensus 326 ~~l~~L~~L~l~~n~-l~~~--~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 326 QWLKCLEHLNMEDND-IPGI--KSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp TTCTTCCEEECCSCC-BCCC--CTTTTTTCTTCCEEECTTCB
T ss_pred ccCCCCCEEECCCCc-cCCC--ChhHhccccCCcEEECCCCc
Confidence 456788888888864 4443 12335677788888877653
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.42 E-value=1.6e-13 Score=119.56 Aligned_cols=206 Identities=17% Similarity=0.155 Sum_probs=106.7
Q ss_pred CCCCccEEEEcCCCCCcccccchh-hhccCcccEEEEccccccceecccccccccccceeee-----cccceEecCCCCC
Q 021510 33 SFNQLKNIEAYNCDKLSNIFWFST-TKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEF-----AQLRSLSLGNLPE 106 (311)
Q Consensus 33 ~l~~L~~L~l~~c~~l~~~~~~~~-~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~ 106 (311)
.+++|++|+++++. ++...+... ...+++|++|+++++. +..++. .+..+ ++|++|+++++ .
T Consensus 93 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~---------~~~~l~~~~~~~L~~L~L~~N-~ 160 (312)
T 1wwl_A 93 GISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVS-WATRDA---------WLAELQQWLKPGLKVLSIAQA-H 160 (312)
T ss_dssp TTSCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSS---------HHHHHHTTCCTTCCEEEEESC-S
T ss_pred CcCCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCCC-CcchhH---------HHHHHHHhhcCCCcEEEeeCC-C
Confidence 46777777777753 333222221 2567777777777753 322221 11222 67777777776 3
Q ss_pred ccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCC--CCCCCC
Q 021510 107 VTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPV--TFPRFQ 184 (311)
Q Consensus 107 l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~--~~~~l~ 184 (311)
++.++. ..+..+++|++|++++|++.+... .+. .+..++
T Consensus 161 l~~~~~------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~~~~l~ 201 (312)
T 1wwl_A 161 SLNFSC------------------------------------EQVRVFPALSTLDLSDNPELGERG---LISALCPLKFP 201 (312)
T ss_dssp CCCCCT------------------------------------TTCCCCSSCCEEECCSCTTCHHHH---HHHHSCTTSCT
T ss_pred CccchH------------------------------------HHhccCCCCCEEECCCCCcCcchH---HHHHHHhccCC
Confidence 333321 111235677777777774332100 011 124566
Q ss_pred cccEEEEecCCCCcccc--chHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCC
Q 021510 185 NLTRLIVWHCHKLKYIF--SASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGM 262 (311)
Q Consensus 185 ~L~~L~i~~c~~l~~~~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 262 (311)
+|++|+++++ .++.+. +...+..+++|++|+++++. ++........ ..+++|+.|+++++ +++.++...
T Consensus 202 ~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~------~~l~~L~~L~Ls~N-~l~~ip~~~ 272 (312)
T 1wwl_A 202 TLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSC------DWPSQLNSLNLSFT-GLKQVPKGL 272 (312)
T ss_dssp TCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCC------CCCTTCCEEECTTS-CCSSCCSSC
T ss_pred CCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhh------hhcCCCCEEECCCC-ccChhhhhc
Confidence 7777777775 333211 22334556777777777775 4443211111 11567777777764 455555433
Q ss_pred cccCCCcccEEEEecCCCccccccccccCCCCCccccccccc
Q 021510 263 HSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL 304 (311)
Q Consensus 263 ~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~ 304 (311)
.++|++|+++++ +++.+|. +........+.+..+.|
T Consensus 273 ----~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 273 ----PAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp ----CSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred ----cCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCC
Confidence 166777777665 4555554 44444455555555543
No 67
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.41 E-value=7e-12 Score=117.93 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=45.7
Q ss_pred ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccc-hHHHhccCCCcEEEEccccccce
Q 021510 152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFS-ASMIRSLKQLQRLEICSCEDLQE 225 (311)
Q Consensus 152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~ 225 (311)
..+++|++|++++|+++.. .|..+..+++|+.|+++++ .++.+.. ...+..+++|++|++++|. ++.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~ 417 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDS-----VFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNS 417 (562)
T ss_dssp SSCCCCCEEECCSSCCCTT-----TTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBS
T ss_pred cCCCCceEEECCCCccccc-----hhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCC
Confidence 3467788888888766642 2456778888999988885 4554311 1235678888899888887 544
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.39 E-value=4.5e-12 Score=108.28 Aligned_cols=203 Identities=18% Similarity=0.206 Sum_probs=141.7
Q ss_pred CCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccCC
Q 021510 35 NQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEV 114 (311)
Q Consensus 35 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 114 (311)
++|++|+++++ .++.+. +..+..+++|++|+++++ .+..++. ..+..+++|++|+++++ .++.++.
T Consensus 28 ~~l~~L~ls~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~--------~~~~~l~~L~~L~L~~n-~l~~~~~-- 93 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLG-SYSFFSFPELQVLDLSRC-EIQTIED--------GAYQSLSHLSTLILTGN-PIQSLAL-- 93 (276)
T ss_dssp TTCCEEECTTC-CCCEEC-TTTTTTCTTCSEEECTTC-CCCEECT--------TTTTTCTTCCEEECTTC-CCCEECT--
T ss_pred CCccEEECCCC-cccccC-HhHhccccCCcEEECCCC-cCCccCH--------HHccCCcCCCEEECCCC-ccCccCh--
Confidence 67999999986 566652 346778999999999997 4555442 23456899999999987 4444432
Q ss_pred CCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecC
Q 021510 115 ETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHC 194 (311)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c 194 (311)
..+..+++|++|++++|++..+. +..+..+++|++|+++++
T Consensus 94 ----------------------------------~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n 134 (276)
T 2z62_A 94 ----------------------------------GAFSGLSSLQKLVAVETNLASLE-----NFPIGHLKTLKELNVAHN 134 (276)
T ss_dssp ----------------------------------TTTTTCTTCCEEECTTSCCCCST-----TCCCTTCTTCCEEECCSS
T ss_pred ----------------------------------hhhcCCccccEEECCCCCccccC-----chhcccCCCCCEEECcCC
Confidence 11234799999999999877651 234778999999999996
Q ss_pred CCCcccc-chHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccC----eEecccCcccccccCCCcccCCCc
Q 021510 195 HKLKYIF-SASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLT----TLKLQDLPKLRCLYPGMHSSEWPA 269 (311)
Q Consensus 195 ~~l~~~~-~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~----~L~l~~c~~L~~l~~~~~~~~~~~ 269 (311)
.+.... +. .+..+++|++|++++|. ++.+.... +..+++|+ +|+++++ .++.++... ....+
T Consensus 135 -~l~~~~l~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~-------~~~l~~L~~l~l~L~ls~n-~l~~~~~~~--~~~~~ 201 (276)
T 2z62_A 135 -LIQSFKLPE-YFSNLTNLEHLDLSSNK-IQSIYCTD-------LRVLHQMPLLNLSLDLSLN-PMNFIQPGA--FKEIR 201 (276)
T ss_dssp -CCCCCCCCG-GGGGCTTCCEEECCSSC-CCEECGGG-------GHHHHTCTTCCEEEECCSS-CCCEECTTS--SCSCC
T ss_pred -ccceecCch-hhccCCCCCEEECCCCC-CCcCCHHH-------hhhhhhccccceeeecCCC-cccccCccc--cCCCc
Confidence 444431 43 37889999999999997 77664211 11145555 7888874 566776554 34558
Q ss_pred ccEEEEecCCCcccccccc-ccCCCCCccccccccc
Q 021510 270 LEILLVYGCDKLKIFAADL-SQNNENDQLGIPAQQL 304 (311)
Q Consensus 270 L~~L~i~~c~~l~~lp~~~-~~~~~~~~~~~~~~~~ 304 (311)
|++|+++++. ++.+|.+. ........+.+..+.+
T Consensus 202 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 202 LKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp EEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred ccEEECCCCc-eeecCHhHhcccccccEEEccCCcc
Confidence 9999999875 77777653 4455566677766654
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.39 E-value=2.1e-12 Score=119.36 Aligned_cols=218 Identities=15% Similarity=0.127 Sum_probs=149.5
Q ss_pred CCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCcccccc
Q 021510 33 SFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCC 112 (311)
Q Consensus 33 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 112 (311)
.+++|++|+++++ .+..+ ++..+..+++|++|++++|. +...+ .+..+++|++|+++++ .++.++.
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~----------~l~~l~~L~~L~Ls~N-~l~~l~~ 97 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQI-SAADLAPFTKLELLNLSSNV-LYETL----------DLESLSTLRTLDLNNN-YVQELLV 97 (487)
T ss_dssp TGGGCCEEECCSS-CCCCC-CGGGGTTCTTCCEEECTTSC-CEEEE----------ECTTCTTCCEEECCSS-EEEEEEE
T ss_pred cCCCccEEEeeCC-cCCCC-CHHHHhCCCCCCEEEeeCCC-CCCCc----------ccccCCCCCEEEecCC-cCCCCCC
Confidence 4569999999997 56654 34677899999999999975 33333 2456899999999998 5666553
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEe
Q 021510 113 EVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVW 192 (311)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~ 192 (311)
. ..+..+.+.. +.+... ....+++|+.|++++|.++.+. |..+..+++|+.|+++
T Consensus 98 ~------------~~L~~L~L~~---N~l~~~-----~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 98 G------------PSIETLHAAN---NNISRV-----SCSRGQGKKNIYLANNKITMLR-----DLDEGCRSRVQYLDLK 152 (487)
T ss_dssp C------------TTCCEEECCS---SCCCCE-----EECCCSSCEEEECCSSCCCSGG-----GBCGGGGSSEEEEECT
T ss_pred C------------CCcCEEECcC---CcCCCC-----CccccCCCCEEECCCCCCCCCC-----chhhcCCCCCCEEECC
Confidence 2 0111122211 111110 0123688999999999777652 3456778899999999
Q ss_pred cCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccE
Q 021510 193 HCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEI 272 (311)
Q Consensus 193 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~ 272 (311)
++ .+....+..+...+++|++|++++|. ++.+.. .. .+++|+.|+++++ .++.++... ..+++|+.
T Consensus 153 ~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~---~~------~l~~L~~L~Ls~N-~l~~~~~~~--~~l~~L~~ 218 (487)
T 3oja_A 153 LN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG---QV------VFAKLKTLDLSSN-KLAFMGPEF--QSAAGVTW 218 (487)
T ss_dssp TS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC---CC------CCTTCCEEECCSS-CCCEECGGG--GGGTTCSE
T ss_pred CC-CCCCcChHHHhhhCCcccEEecCCCc-cccccc---cc------cCCCCCEEECCCC-CCCCCCHhH--cCCCCccE
Confidence 96 55555355544578999999999997 776632 11 2899999999985 567776553 56899999
Q ss_pred EEEecCCCccccccccccCCCCCccccccccc
Q 021510 273 LLVYGCDKLKIFAADLSQNNENDQLGIPAQQL 304 (311)
Q Consensus 273 L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~ 304 (311)
|++++| ++..+|..+........+.+..+.+
T Consensus 219 L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 219 ISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp EECTTS-CCCEECTTCCCCTTCCEEECTTCCB
T ss_pred EEecCC-cCcccchhhccCCCCCEEEcCCCCC
Confidence 999986 4666887766666666677766543
No 70
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.39 E-value=3.5e-12 Score=111.97 Aligned_cols=228 Identities=16% Similarity=0.176 Sum_probs=127.6
Q ss_pred cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510 9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI 88 (311)
Q Consensus 9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 88 (311)
+++.++++++ +++.++. .-.++|++|+++++. ++.+. +..+..+++|++|+++++. +..+.+ .
T Consensus 34 ~l~~l~~~~~-~l~~ip~-----~~~~~l~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~--------~ 96 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPK-----EISPDTTLLDLQNND-ISELR-KDDFKGLQHLYALVLVNNK-ISKIHE--------K 96 (332)
T ss_dssp ETTEEECCSS-CCSSCCS-----CCCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCEECG--------G
T ss_pred cCCEEECCCC-CccccCC-----CCCCCCeEEECCCCc-CCccC-HhHhhCCCCCcEEECCCCc-cCccCH--------h
Confidence 5777777774 3555421 224688888888863 55542 3456778888888888764 444321 1
Q ss_pred ceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeece
Q 021510 89 EKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVD 168 (311)
Q Consensus 89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 168 (311)
.+..+++|++|+++++ .++.++.... ..+..+.+... .+..-+ ...+..+++|++|++++|.++
T Consensus 97 ~~~~l~~L~~L~L~~n-~l~~l~~~~~----------~~L~~L~l~~n---~i~~~~--~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 97 AFSPLRKLQKLYISKN-HLVEIPPNLP----------SSLVELRIHDN---RIRKVP--KGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp GSTTCTTCCEEECCSS-CCCSCCSSCC----------TTCCEEECCSS---CCCCCC--SGGGSSCSSCCEEECCSCCCB
T ss_pred HhhCcCCCCEEECCCC-cCCccCcccc----------ccCCEEECCCC---ccCccC--HhHhCCCccCCEEECCCCccc
Confidence 3456788888888876 4555443221 11111222211 111000 112345899999999999665
Q ss_pred eeeccCCCCCCCCCC--------------------CcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecc
Q 021510 169 QIWHYNHLPVTFPRF--------------------QNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIIS 228 (311)
Q Consensus 169 ~i~~~~~~p~~~~~l--------------------~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 228 (311)
.... .+..+..+ ++|++|+++++ .+... +...+..+++|++|+++++. ++.+..
T Consensus 161 ~~~~---~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n-~i~~~-~~~~l~~l~~L~~L~L~~N~-l~~~~~ 234 (332)
T 2ft3_A 161 NSGF---EPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN-KIQAI-ELEDLLRYSKLYRLGLGHNQ-IRMIEN 234 (332)
T ss_dssp GGGS---CTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSS-CCCCC-CTTSSTTCTTCSCCBCCSSC-CCCCCT
T ss_pred cCCC---CcccccCCccCEEECcCCCCCccCccccCCCCEEECCCC-cCCcc-CHHHhcCCCCCCEEECCCCc-CCcCCh
Confidence 3211 12222222 34555555553 33333 22225566777777777765 544421
Q ss_pred cccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCcccccc
Q 021510 229 ENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAA 286 (311)
Q Consensus 229 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~ 286 (311)
..+..+++|+.|+++++ +++.++... ..+++|++|+++++ +++.++.
T Consensus 235 -------~~~~~l~~L~~L~L~~N-~l~~lp~~l--~~l~~L~~L~l~~N-~l~~~~~ 281 (332)
T 2ft3_A 235 -------GSLSFLPTLRELHLDNN-KLSRVPAGL--PDLKLLQVVYLHTN-NITKVGV 281 (332)
T ss_dssp -------TGGGGCTTCCEEECCSS-CCCBCCTTG--GGCTTCCEEECCSS-CCCBCCT
T ss_pred -------hHhhCCCCCCEEECCCC-cCeecChhh--hcCccCCEEECCCC-CCCccCh
Confidence 11223788888888875 566776654 56788888888876 4555554
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.38 E-value=3.5e-12 Score=110.90 Aligned_cols=169 Identities=17% Similarity=0.245 Sum_probs=124.7
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
..+++|++|+++++ .++.+ ..++.+++|++|+++++. ++.+ +.+..+++|++|++++|. +..++
T Consensus 60 ~~l~~L~~L~L~~n-~i~~~----~~~~~l~~L~~L~L~~n~-l~~~---~~~~~l~~L~~L~l~~n~-l~~~~------ 123 (308)
T 1h6u_A 60 QYLNNLIGLELKDN-QITDL----APLKNLTKITELELSGNP-LKNV---SAIAGLQSIKTLDLTSTQ-ITDVT------ 123 (308)
T ss_dssp GGCTTCCEEECCSS-CCCCC----GGGTTCCSCCEEECCSCC-CSCC---GGGTTCTTCCEEECTTSC-CCCCG------
T ss_pred hccCCCCEEEccCC-cCCCC----hhHccCCCCCEEEccCCc-CCCc---hhhcCCCCCCEEECCCCC-CCCch------
Confidence 45789999999997 46664 237899999999999975 6665 457889999999999974 44443
Q ss_pred ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE 164 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (311)
.+..+++|++|+++++ .++.++. +..+++|++|++++
T Consensus 124 ----~l~~l~~L~~L~l~~n-~l~~~~~--------------------------------------l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 124 ----PLAGLSNLQVLYLDLN-QITNISP--------------------------------------LAGLTNLQYLSIGN 160 (308)
T ss_dssp ----GGTTCTTCCEEECCSS-CCCCCGG--------------------------------------GGGCTTCCEEECCS
T ss_pred ----hhcCCCCCCEEECCCC-ccCcCcc--------------------------------------ccCCCCccEEEccC
Confidence 2457899999999987 4443321 23478899999999
Q ss_pred eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510 165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL 244 (311)
Q Consensus 165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 244 (311)
|+++.+ +. +..+++|+.|+++++ .+..+.+ +..+++|++|++++|. ++.+.. +..+++|
T Consensus 161 n~l~~~------~~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N~-l~~~~~---------l~~l~~L 219 (308)
T 1h6u_A 161 AQVSDL------TP-LANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNNQ-ISDVSP---------LANTSNL 219 (308)
T ss_dssp SCCCCC------GG-GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTSC-CCBCGG---------GTTCTTC
T ss_pred CcCCCC------hh-hcCCCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCCc-cCcccc---------ccCCCCC
Confidence 877765 22 667888999999885 4555522 6778899999999886 665532 1228889
Q ss_pred CeEecccCc
Q 021510 245 TTLKLQDLP 253 (311)
Q Consensus 245 ~~L~l~~c~ 253 (311)
+.|++++++
T Consensus 220 ~~L~l~~N~ 228 (308)
T 1h6u_A 220 FIVTLTNQT 228 (308)
T ss_dssp CEEEEEEEE
T ss_pred CEEEccCCe
Confidence 999888754
No 72
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.38 E-value=2.3e-12 Score=119.97 Aligned_cols=109 Identities=15% Similarity=0.142 Sum_probs=69.2
Q ss_pred ccCCCccEEEeeeeecee-eeccCCCCC-CCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccc
Q 021510 152 VALPNLEVLEISEINVDQ-IWHYNHLPV-TFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISE 229 (311)
Q Consensus 152 ~~l~~L~~L~l~~~~l~~-i~~~~~~p~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 229 (311)
..+++|++|++++|.++. + |. .+..+++|+.|+++++.-.... +.. + .++|++|++++|. ++.++.
T Consensus 371 ~~l~~L~~L~Ls~N~l~~~l------~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~-l--~~~L~~L~Ls~N~-l~~ip~- 438 (520)
T 2z7x_B 371 TQMKSLQQLDISQNSVSYDE------KKGDCSWTKSLLSLNMSSNILTDTI-FRC-L--PPRIKVLDLHSNK-IKSIPK- 438 (520)
T ss_dssp TTCTTCCEEECCSSCCBCCG------GGCSCCCCTTCCEEECCSSCCCGGG-GGS-C--CTTCCEEECCSSC-CCCCCG-
T ss_pred hhCCCCCEEECCCCcCCccc------ccchhccCccCCEEECcCCCCCcch-hhh-h--cccCCEEECCCCc-ccccch-
Confidence 457788888888886665 4 22 2456678888888876433322 221 1 1578888888886 665532
Q ss_pred ccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCc
Q 021510 230 NRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKL 281 (311)
Q Consensus 230 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l 281 (311)
.... +++|+.|+++++ +++.++... ...+++|++|++.+++--
T Consensus 439 -~~~~------l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 439 -QVVK------LEALQELNVASN-QLKSVPDGI-FDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp -GGGG------CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCBC
T ss_pred -hhhc------CCCCCEEECCCC-cCCccCHHH-hccCCcccEEECcCCCCc
Confidence 1112 788888888875 566766542 146778888888887643
No 73
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.38 E-value=3.5e-11 Score=113.14 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=42.0
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceec
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIF 78 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~ 78 (311)
...++|++|+++++. ++++. +..++.+++|++|+++++ .++.+. +..+..+++|++|+++++. +..++
T Consensus 49 ~~~~~L~~L~Ls~N~-i~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~lp 116 (562)
T 3a79_B 49 DLPPRTKALSLSQNS-ISELR--MPDISFLSELRVLRLSHN-RIRSLD-FHVFLFNQDLEYLDVSHNR-LQNIS 116 (562)
T ss_dssp TSCTTCCEEECCSSC-CCCCC--GGGTTTCTTCCEEECCSC-CCCEEC-TTTTTTCTTCCEEECTTSC-CCEEC
T ss_pred CCCCCcCEEECCCCC-ccccC--hhhhccCCCccEEECCCC-CCCcCC-HHHhCCCCCCCEEECCCCc-CCccC
Confidence 344678888887753 55531 234567777888888775 455442 3456667777777777753 44444
No 74
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.37 E-value=1.1e-11 Score=109.69 Aligned_cols=192 Identities=16% Similarity=0.122 Sum_probs=107.2
Q ss_pred CCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccC
Q 021510 34 FNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCE 113 (311)
Q Consensus 34 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 113 (311)
.+++++|+++++ +++.+ ++..+.++++|++|+++++..++.++. ..+..+++++++.+.++.+++.++..
T Consensus 29 ~~~l~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~--------~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 29 PRNAIELRFVLT-KLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEA--------DVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp CTTCSEEEEESC-CCSEE-CTTSSTTCTTCCEEEEECCTTCCEECT--------TSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCCCEEEccCC-cCCCc-CHHHHcCCCCCCEEECcCCCCCCccCh--------hHhhcchhhhhhhcccCCcccccCch
Confidence 478999999985 67776 234578899999999999876665552 12346677777666665567666442
Q ss_pred CCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCC-----------------
Q 021510 114 VETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHL----------------- 176 (311)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~----------------- 176 (311)
.. ..+++|++|++++|+++.+......
T Consensus 99 ~f------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 99 AF------------------------------------QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH 142 (350)
T ss_dssp SB------------------------------------CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC
T ss_pred hh------------------------------------hhccccccccccccccccCCchhhcccchhhhhhhccccccc
Confidence 11 2245555555555544433110000
Q ss_pred --C-CCCCCC-CcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccC
Q 021510 177 --P-VTFPRF-QNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDL 252 (311)
Q Consensus 177 --p-~~~~~l-~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 252 (311)
+ ..+..+ ..++.|++++ +.++.+ +.. +...++|+++.+.++..++.+.. ..+..+++|+.|+++++
T Consensus 143 ~l~~~~f~~~~~~l~~L~L~~-N~i~~i-~~~-~f~~~~L~~l~l~~~n~l~~i~~-------~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 143 TIERNSFVGLSFESVILWLNK-NGIQEI-HNS-AFNGTQLDELNLSDNNNLEELPN-------DVFHGASGPVILDISRT 212 (350)
T ss_dssp EECTTSSTTSBSSCEEEECCS-SCCCEE-CTT-SSTTEEEEEEECTTCTTCCCCCT-------TTTTTEECCSEEECTTS
T ss_pred cccccchhhcchhhhhhcccc-ccccCC-Chh-hccccchhHHhhccCCcccCCCH-------HHhccCcccchhhcCCC
Confidence 1 111222 2344444444 233333 222 12233455555555444544421 11222677777777764
Q ss_pred cccccccCCCcccCCCcccEEEEecCCCcccccc
Q 021510 253 PKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAA 286 (311)
Q Consensus 253 ~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~ 286 (311)
++++++.+. +..|++|++.++.+++.+|.
T Consensus 213 -~l~~lp~~~----~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 213 -RIHSLPSYG----LENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp -CCCCCCSSS----CTTCCEEECTTCTTCCCCCC
T ss_pred -CcCccChhh----hccchHhhhccCCCcCcCCC
Confidence 567766533 56777777777777777773
No 75
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.35 E-value=3.4e-11 Score=115.73 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=25.1
Q ss_pred cCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 240 VFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 240 ~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
.+++|+.|+++++ +++.++.... ..+++|++|+++++.
T Consensus 478 ~l~~L~~L~Ls~N-~l~~i~~~~~-~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 478 PLRNLTILDLSNN-NIANINDDML-EGLEKLEILDLQHNN 515 (680)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC
T ss_pred cCCCCCEEECCCC-CCCcCChhhh-ccccccCEEeCCCCC
Confidence 3677888888774 4555554321 367888888888764
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.35 E-value=2.2e-12 Score=112.36 Aligned_cols=207 Identities=18% Similarity=0.121 Sum_probs=113.4
Q ss_pred cCCcccEEeecccccccccccccccc--cCCCCccEEEEcCCCCCcccccchhhhcc-----CcccEEEEccccccceec
Q 021510 6 AFPLLQSLILHNLINMERLCIDRLKV--ESFNQLKNIEAYNCDKLSNIFWFSTTKCL-----PRLERIAVINCSKMKEIF 78 (311)
Q Consensus 6 ~l~~L~~L~L~~~~~l~~l~~~~~~~--~~l~~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~i~~c~~l~~~~ 78 (311)
.+++|++|+++++. +++. .+..+ +.+++|++|+++++ .++.. +..+..+ ++|++|+++++. +..++
T Consensus 93 ~l~~L~~L~L~~n~-l~~~--~~~~~~~~~l~~L~~L~Ls~N-~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~ 165 (312)
T 1wwl_A 93 GISGLQELTLENLE-VTGT--APPPLLEATGPDLNILNLRNV-SWATR--DAWLAELQQWLKPGLKVLSIAQAH-SLNFS 165 (312)
T ss_dssp TTSCCCEEEEEEEB-CBSC--CCCCSSSCCSCCCSEEEEESC-BCSSS--SSHHHHHHTTCCTTCCEEEEESCS-CCCCC
T ss_pred CcCCccEEEccCCc-ccch--hHHHHHHhcCCCccEEEccCC-CCcch--hHHHHHHHHhhcCCCcEEEeeCCC-Cccch
Confidence 36777777777754 4431 12222 66777777777775 34444 2444444 777777777754 33332
Q ss_pred ccccccccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCcc
Q 021510 79 SIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLE 158 (311)
Q Consensus 79 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~ 158 (311)
. ..+..+++|++|+++++.-.+..+... ......+++|+
T Consensus 166 ~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~---------------------------------~~~~~~l~~L~ 204 (312)
T 1wwl_A 166 C--------EQVRVFPALSTLDLSDNPELGERGLIS---------------------------------ALCPLKFPTLQ 204 (312)
T ss_dssp T--------TTCCCCSSCCEEECCSCTTCHHHHHHH---------------------------------HSCTTSCTTCC
T ss_pred H--------HHhccCCCCCEEECCCCCcCcchHHHH---------------------------------HHHhccCCCCC
Confidence 1 234567777777777764322211000 00002357777
Q ss_pred EEEeeeeeceeeeccCCCCC-CCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCC
Q 021510 159 VLEISEINVDQIWHYNHLPV-TFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIP 237 (311)
Q Consensus 159 ~L~l~~~~l~~i~~~~~~p~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 237 (311)
+|++++|+++.+... +. .+..+++|++|+++++ .+....+......+++|++|++++|. ++.++. ..
T Consensus 205 ~L~L~~N~l~~~~~~---~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~--~~----- 272 (312)
T 1wwl_A 205 VLALRNAGMETPSGV---CSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK--GL----- 272 (312)
T ss_dssp EEECTTSCCCCHHHH---HHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS--SC-----
T ss_pred EEECCCCcCcchHHH---HHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCc-cChhhh--hc-----
Confidence 777777766533110 11 1234567777777775 34433222224456777777777776 554421 11
Q ss_pred cccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 238 YFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 238 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
+++|+.|+++++ +++.++. . ..+++|++|++.+++
T Consensus 273 ---~~~L~~L~Ls~N-~l~~~p~-~--~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 273 ---PAKLSVLDLSYN-RLDRNPS-P--DELPQVGNLSLKGNP 307 (312)
T ss_dssp ---CSEEEEEECCSS-CCCSCCC-T--TTSCEEEEEECTTCT
T ss_pred ---cCCceEEECCCC-CCCCChh-H--hhCCCCCEEeccCCC
Confidence 367777777764 5555543 2 456777777776654
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.33 E-value=2.6e-12 Score=110.81 Aligned_cols=167 Identities=19% Similarity=0.276 Sum_probs=88.4
Q ss_pred cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510 6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD 85 (311)
Q Consensus 6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 85 (311)
.+++|++|+++++ .++.+ +.++.+++|++|+++++ .++.+ +. +..+++|++|+++++. +..++
T Consensus 44 ~l~~L~~L~l~~~-~i~~~----~~~~~l~~L~~L~L~~n-~l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~------- 106 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSV----QGIQYLPNVTKLFLNGN-KLTDI--KP-LANLKNLGWLFLDENK-VKDLS------- 106 (291)
T ss_dssp HHHTCCEEECTTS-CCCCC----TTGGGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSSC-CCCGG-------
T ss_pred hcCcccEEEccCC-CcccC----hhHhcCCCCCEEEccCC-ccCCC--cc-cccCCCCCEEECCCCc-CCCCh-------
Confidence 4566677777665 34442 33466677777777665 34444 12 5666777777776653 33332
Q ss_pred cccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee
Q 021510 86 NAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI 165 (311)
Q Consensus 86 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (311)
.+..+++|++|+++++ .++.++ .+..+++|+.|++++|
T Consensus 107 ---~l~~l~~L~~L~L~~n-~i~~~~--------------------------------------~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 107 ---SLKDLKKLKSLSLEHN-GISDIN--------------------------------------GLVHLPQLESLYLGNN 144 (291)
T ss_dssp ---GGTTCTTCCEEECTTS-CCCCCG--------------------------------------GGGGCTTCCEEECCSS
T ss_pred ---hhccCCCCCEEECCCC-cCCCCh--------------------------------------hhcCCCCCCEEEccCC
Confidence 2345666777776665 333321 1122556666666666
Q ss_pred eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccC
Q 021510 166 NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLT 245 (311)
Q Consensus 166 ~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~ 245 (311)
+++.+ ..+..+++|+.|+++++ .+..+.+ +..+++|++|++++|. ++.+.. . ..+++|+
T Consensus 145 ~l~~~-------~~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N~-i~~l~~---l------~~l~~L~ 203 (291)
T 1h6t_A 145 KITDI-------TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKNH-ISDLRA---L------AGLKNLD 203 (291)
T ss_dssp CCCCC-------GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCBCGG---G------TTCTTCS
T ss_pred cCCcc-------hhhccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCCc-CCCChh---h------ccCCCCC
Confidence 55543 22345556666666664 3333312 4556666666666664 444311 1 1155666
Q ss_pred eEecccC
Q 021510 246 TLKLQDL 252 (311)
Q Consensus 246 ~L~l~~c 252 (311)
.|+++++
T Consensus 204 ~L~l~~n 210 (291)
T 1h6t_A 204 VLELFSQ 210 (291)
T ss_dssp EEEEEEE
T ss_pred EEECcCC
Confidence 6666553
No 78
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.33 E-value=1.5e-11 Score=115.17 Aligned_cols=211 Identities=16% Similarity=0.151 Sum_probs=120.3
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
..+++|++|+++++. ++.+. +..++.+++|++|+++++ .++.+ ++..++.+++|++|+++++. +..+..
T Consensus 47 ~~l~~L~~L~Ls~n~-i~~~~--~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~----- 115 (549)
T 2z81_A 47 RACANLQVLILKSSR-INTIE--GDAFYSLGSLEHLDLSDN-HLSSL-SSSWFGPLSSLKYLNLMGNP-YQTLGV----- 115 (549)
T ss_dssp SSCTTCCEEECTTSC-CCEEC--TTTTTTCTTCCEEECTTS-CCCSC-CHHHHTTCTTCCEEECTTCC-CSSSCS-----
T ss_pred hcCCcccEEECCCCC-cCccC--hhhccccccCCEEECCCC-ccCcc-CHHHhccCCCCcEEECCCCc-ccccch-----
Confidence 345667777777653 44421 233566677777777665 34443 12345666777777776653 221110
Q ss_pred ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE 164 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (311)
...+..+++|++|+++++..++.++. ..+..+++|++|++++
T Consensus 116 --~~~~~~l~~L~~L~L~~n~~~~~~~~------------------------------------~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 116 --TSLFPNLTNLQTLRIGNVETFSEIRR------------------------------------IDFAGLTSLNELEIKA 157 (549)
T ss_dssp --SCSCTTCTTCCEEEEEESSSCCEECT------------------------------------TTTTTCCEEEEEEEEE
T ss_pred --hhhhhccCCccEEECCCCccccccCH------------------------------------hhhhcccccCeeeccC
Confidence 01234566677777766644443322 1123367888888888
Q ss_pred eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510 165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL 244 (311)
Q Consensus 165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 244 (311)
|+++.. .|..+..+++|+.|++.++. .... +...+..+++|++|+++++. ++....... .....+++|
T Consensus 158 n~l~~~-----~~~~l~~l~~L~~L~l~~n~-~~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~----~~~~~~~~L 225 (549)
T 2z81_A 158 LSLRNY-----QSQSLKSIRDIHHLTLHLSE-SAFL-LEIFADILSSVRYLELRDTN-LARFQFSPL----PVDEVSSPM 225 (549)
T ss_dssp TTCCEE-----CTTTTTTCSEEEEEEEECSB-STTH-HHHHHHSTTTBSEEEEESCB-CTTCCCCCC----SSCCCCCCC
T ss_pred Cccccc-----ChhhhhccccCceEecccCc-cccc-chhhHhhcccccEEEccCCc-ccccccccc----chhhhhhcc
Confidence 866654 24566777888888888753 3333 44445668888888888876 544311100 011126788
Q ss_pred CeEecccCccccc-----ccCCCcccCCCcccEEEEecCC
Q 021510 245 TTLKLQDLPKLRC-----LYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 245 ~~L~l~~c~~L~~-----l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
+.|.+.++. ++. +.... ..+++|+.+++.+|.
T Consensus 226 ~~L~l~~n~-l~~~~~~~l~~~~--~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 226 KKLAFRGSV-LTDESFNELLKLL--RYILELSEVEFDDCT 262 (549)
T ss_dssp CEEEEESCE-EEHHHHHHHHGGG--GGCTTCCEEEEESCE
T ss_pred cceeccccc-cchhHHHHHHHHh--hhhcccccccccccc
Confidence 888887753 222 11111 356788999998886
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.33 E-value=1.4e-12 Score=113.47 Aligned_cols=238 Identities=15% Similarity=0.153 Sum_probs=137.1
Q ss_pred cccEEeeccccccccc-ccccccccCCCCccEEEEcCCCCCcccccchhh-hccCcccEEEEccccccceeccccccccc
Q 021510 9 LLQSLILHNLINMERL-CIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTT-KCLPRLERIAVINCSKMKEIFSIGEEVDN 86 (311)
Q Consensus 9 ~L~~L~L~~~~~l~~l-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~-~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 86 (311)
.++.+.+.++. +..- .......-.+++|++|++++|. +....+...+ ..+++|++|+++++.-....+...
T Consensus 65 ~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~----- 137 (310)
T 4glp_A 65 RVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA----- 137 (310)
T ss_dssp CCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH-----
T ss_pred ceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecccccchhhhhH-----
Confidence 45667777653 2210 0001112234679999999874 4443332222 778999999999875332211000
Q ss_pred ccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeee
Q 021510 87 AIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEIN 166 (311)
Q Consensus 87 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (311)
......+++|++|+++++ .++..+. ..+..+++|++|++++|+
T Consensus 138 ~~~~~~~~~L~~L~Ls~n-~l~~~~~------------------------------------~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 138 ELQQWLKPGLKVLSIAQA-HSPAFSC------------------------------------EQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp HHHTTBCSCCCEEEEECC-SSCCCCT------------------------------------TSCCCCTTCCEEECCSCT
T ss_pred HHHhhhccCCCEEEeeCC-CcchhhH------------------------------------HHhccCCCCCEEECCCCC
Confidence 012235788999999887 3443322 112347889999999986
Q ss_pred ceeeeccCCCCCCCCCCCcccEEEEecCCCCcccc--chHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510 167 VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIF--SASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL 244 (311)
Q Consensus 167 l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 244 (311)
+...... ..+..+..+++|++|++++| .++.+. +...+..+++|++|+++++. ++..... .... ...+++|
T Consensus 181 l~~~~~~-~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~-~~~~---~~~~~~L 253 (310)
T 4glp_A 181 GLGERGL-MAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNP-SAPR---CMWSSAL 253 (310)
T ss_dssp TCHHHHH-HTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCS-CCSS---CCCCTTC
T ss_pred Cccchhh-hHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchh-hHHh---ccCcCcC
Confidence 5431000 00122357788999999986 444331 11234678899999999987 6554211 1111 1113789
Q ss_pred CeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCccccccccc
Q 021510 245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL 304 (311)
Q Consensus 245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~ 304 (311)
++|+++++ +++.++... +++|++|+++++ +++.+|. .........+.+..+.|
T Consensus 254 ~~L~Ls~N-~l~~lp~~~----~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 254 NSLNLSFA-GLEQVPKGL----PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCEECCSS-CCCSCCSCC----CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred CEEECCCC-CCCchhhhh----cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCCC
Confidence 99999874 566776543 378999999876 4554443 33344556666666654
No 80
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.32 E-value=1.3e-12 Score=112.66 Aligned_cols=172 Identities=17% Similarity=0.284 Sum_probs=129.3
Q ss_pred ccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCcc
Q 021510 29 LKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVT 108 (311)
Q Consensus 29 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 108 (311)
.....+++|++|++++| .+..+ +.+..+++|++|+++++. +..++ .+..+++|++|+++++ .++
T Consensus 40 ~~~~~l~~L~~L~l~~~-~i~~~---~~~~~l~~L~~L~L~~n~-l~~~~----------~l~~l~~L~~L~l~~n-~l~ 103 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNS-DIKSV---QGIQYLPNVTKLFLNGNK-LTDIK----------PLANLKNLGWLFLDEN-KVK 103 (291)
T ss_dssp ECHHHHHTCCEEECTTS-CCCCC---TTGGGCTTCCEEECCSSC-CCCCG----------GGTTCTTCCEEECCSS-CCC
T ss_pred cchhhcCcccEEEccCC-CcccC---hhHhcCCCCCEEEccCCc-cCCCc----------ccccCCCCCEEECCCC-cCC
Confidence 34467899999999997 55655 347789999999999864 44443 2457889999999887 344
Q ss_pred ccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccE
Q 021510 109 SFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTR 188 (311)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~ 188 (311)
.++. +..+++|++|++++|+++.+ ..+..+++|+.
T Consensus 104 ~~~~--------------------------------------l~~l~~L~~L~L~~n~i~~~-------~~l~~l~~L~~ 138 (291)
T 1h6t_A 104 DLSS--------------------------------------LKDLKKLKSLSLEHNGISDI-------NGLVHLPQLES 138 (291)
T ss_dssp CGGG--------------------------------------GTTCTTCCEEECTTSCCCCC-------GGGGGCTTCCE
T ss_pred CChh--------------------------------------hccCCCCCEEECCCCcCCCC-------hhhcCCCCCCE
Confidence 4321 23479999999999988765 34567889999
Q ss_pred EEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCC
Q 021510 189 LIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWP 268 (311)
Q Consensus 189 L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~ 268 (311)
|+++++ .+..+ ..+..+++|++|++++|. ++.+.. . ..+++|+.|+++++ .++.++. . ..++
T Consensus 139 L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~---l------~~l~~L~~L~L~~N-~i~~l~~-l--~~l~ 200 (291)
T 1h6t_A 139 LYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---L------AGLTKLQNLYLSKN-HISDLRA-L--AGLK 200 (291)
T ss_dssp EECCSS-CCCCC---GGGGGCTTCSEEECCSSC-CCCCGG---G------TTCTTCCEEECCSS-CCCBCGG-G--TTCT
T ss_pred EEccCC-cCCcc---hhhccCCCCCEEEccCCc-cccchh---h------cCCCccCEEECCCC-cCCCChh-h--ccCC
Confidence 999996 45544 237789999999999997 766532 1 22899999999986 6666643 2 5789
Q ss_pred cccEEEEecCC
Q 021510 269 ALEILLVYGCD 279 (311)
Q Consensus 269 ~L~~L~i~~c~ 279 (311)
+|+.|++.+++
T Consensus 201 ~L~~L~l~~n~ 211 (291)
T 1h6t_A 201 NLDVLELFSQE 211 (291)
T ss_dssp TCSEEEEEEEE
T ss_pred CCCEEECcCCc
Confidence 99999999875
No 81
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.30 E-value=4.7e-12 Score=119.81 Aligned_cols=168 Identities=18% Similarity=0.269 Sum_probs=97.3
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
..+++|+.|++.++. +..+ +.++.+++|++|++++| .+..+. .+..+++|++|++++|. +..++
T Consensus 40 ~~L~~L~~L~l~~n~-i~~l----~~l~~l~~L~~L~Ls~N-~l~~~~---~l~~l~~L~~L~Ls~N~-l~~l~------ 103 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKSV----QGIQYLPNVTKLFLNGN-KLTDIK---PLTNLKNLGWLFLDENK-IKDLS------ 103 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCCC----TTGGGCTTCCEEECTTS-CCCCCG---GGGGCTTCCEEECCSSC-CCCCT------
T ss_pred hcCCCCCEEECcCCC-CCCC----hHHccCCCCCEEEeeCC-CCCCCh---hhccCCCCCEEECcCCC-CCCCh------
Confidence 346677777777753 5443 34577788888888776 455542 26677788888887763 33332
Q ss_pred ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE 164 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (311)
.+..+++|++|+++++ .+..++ .+..+++|+.|++++
T Consensus 104 ----~l~~l~~L~~L~Ls~N-~l~~l~--------------------------------------~l~~l~~L~~L~Ls~ 140 (605)
T 1m9s_A 104 ----SLKDLKKLKSLSLEHN-GISDIN--------------------------------------GLVHLPQLESLYLGN 140 (605)
T ss_dssp ----TSTTCTTCCEEECTTS-CCCCCG--------------------------------------GGGGCTTCSEEECCS
T ss_pred ----hhccCCCCCEEEecCC-CCCCCc--------------------------------------cccCCCccCEEECCC
Confidence 2445677777777776 333321 112356666666666
Q ss_pred eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510 165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL 244 (311)
Q Consensus 165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 244 (311)
|.+..+ ..+..+++|+.|++++| .+..+.+ +..+++|++|++++|. +..+.. . ..+++|
T Consensus 141 N~l~~l-------~~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-i~~l~~---l------~~l~~L 199 (605)
T 1m9s_A 141 NKITDI-------TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKNH-ISDLRA---L------AGLKNL 199 (605)
T ss_dssp SCCCCC-------GGGGSCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCBCGG---G------TTCTTC
T ss_pred CccCCc-------hhhcccCCCCEEECcCC-cCCCchh---hccCCCCCEEECcCCC-CCCChH---H------ccCCCC
Confidence 655544 23445566666666664 3333322 4556666666666664 544311 1 116666
Q ss_pred CeEecccC
Q 021510 245 TTLKLQDL 252 (311)
Q Consensus 245 ~~L~l~~c 252 (311)
+.|++++|
T Consensus 200 ~~L~L~~N 207 (605)
T 1m9s_A 200 DVLELFSQ 207 (605)
T ss_dssp SEEECCSE
T ss_pred CEEEccCC
Confidence 66666654
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.30 E-value=2.8e-11 Score=101.91 Aligned_cols=176 Identities=16% Similarity=0.154 Sum_probs=107.5
Q ss_pred cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510 9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI 88 (311)
Q Consensus 9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 88 (311)
+.+++++++. +++.++. +-.+++++|+++++ .+..+. +..+..+++|++|+++++ .+..++. .
T Consensus 15 ~~~~l~~~~~-~l~~~p~-----~~~~~l~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~--------~ 77 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPS-----GIPADTEKLDLQST-GLATLS-DATFRGLTKLTWLNLDYN-QLQTLSA--------G 77 (251)
T ss_dssp GGTEEECTTC-CCSSCCS-----CCCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECTTS-CCCCCCT--------T
T ss_pred CCeEEecCCC-CccccCC-----CCCCCCCEEEccCC-CcCccC-HhHhcCcccCCEEECCCC-cCCccCH--------h
Confidence 4567777764 4555422 22367888888875 344442 345677888888888885 3443331 1
Q ss_pred ceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeece
Q 021510 89 EKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVD 168 (311)
Q Consensus 89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 168 (311)
.+..+++|++|+++++ .++.++.. .+..+++|++|++++|+++
T Consensus 78 ~~~~l~~L~~L~L~~n-~l~~~~~~------------------------------------~~~~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 78 VFDDLTELGTLGLANN-QLASLPLG------------------------------------VFDHLTQLDKLYLGGNQLK 120 (251)
T ss_dssp TTTTCTTCCEEECTTS-CCCCCCTT------------------------------------TTTTCTTCCEEECCSSCCC
T ss_pred HhccCCcCCEEECCCC-cccccChh------------------------------------HhcccCCCCEEEcCCCcCC
Confidence 2345678888888776 34433321 1123678888888888776
Q ss_pred eeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEe
Q 021510 169 QIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLK 248 (311)
Q Consensus 169 ~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 248 (311)
.+. +..+..+++|+.|+++++ .++.+ +...+..+++|++|+++++. ++.+... . +..+++|+.|+
T Consensus 121 ~~~-----~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~------~~~l~~L~~L~ 185 (251)
T 3m19_A 121 SLP-----SGVFDRLTKLKELRLNTN-QLQSI-PAGAFDKLTNLQTLSLSTNQ-LQSVPHG-A------FDRLGKLQTIT 185 (251)
T ss_dssp CCC-----TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CSCCCTT-T------TTTCTTCCEEE
T ss_pred CcC-----hhHhccCCcccEEECcCC-cCCcc-CHHHcCcCcCCCEEECCCCc-CCccCHH-H------HhCCCCCCEEE
Confidence 551 223566778888888875 55555 33336677888888888876 5554321 1 11267788888
Q ss_pred cccCc
Q 021510 249 LQDLP 253 (311)
Q Consensus 249 l~~c~ 253 (311)
+++++
T Consensus 186 l~~N~ 190 (251)
T 3m19_A 186 LFGNQ 190 (251)
T ss_dssp CCSCC
T ss_pred eeCCc
Confidence 77644
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.29 E-value=6.4e-11 Score=112.31 Aligned_cols=232 Identities=15% Similarity=0.105 Sum_probs=119.6
Q ss_pred cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510 9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI 88 (311)
Q Consensus 9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 88 (311)
++++|+++++ +++.++.. -.++|++|++++| +++.+ +. .+++|++|++++|. +..++.
T Consensus 41 ~l~~L~ls~n-~L~~lp~~-----l~~~L~~L~L~~N-~l~~l--p~---~l~~L~~L~Ls~N~-l~~lp~--------- 98 (622)
T 3g06_A 41 GNAVLNVGES-GLTTLPDC-----LPAHITTLVIPDN-NLTSL--PA---LPPELRTLEVSGNQ-LTSLPV--------- 98 (622)
T ss_dssp CCCEEECCSS-CCSCCCSC-----CCTTCSEEEECSC-CCSCC--CC---CCTTCCEEEECSCC-CSCCCC---------
T ss_pred CCcEEEecCC-CcCccChh-----hCCCCcEEEecCC-CCCCC--CC---cCCCCCEEEcCCCc-CCcCCC---------
Confidence 5889999985 47765321 2389999999997 56665 22 57999999999975 555542
Q ss_pred ceeeecccceEecCCCCCccccccCCC----------CCCCCCCccccccccccccccccccccccccccccc-------
Q 021510 89 EKIEFAQLRSLSLGNLPEVTSFCCEVE----------TPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEK------- 151 (311)
Q Consensus 89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~----------~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~------- 151 (311)
.+++|++|+++++ +++.++.... .....+ .....+..+.+.. +.+..-+..+..+
T Consensus 99 ---~l~~L~~L~Ls~N-~l~~l~~~l~~L~~L~L~~N~l~~lp-~~l~~L~~L~Ls~---N~l~~l~~~~~~L~~L~L~~ 170 (622)
T 3g06_A 99 ---LPPGLLELSIFSN-PLTHLPALPSGLCKLWIFGNQLTSLP-VLPPGLQELSVSD---NQLASLPALPSELCKLWAYN 170 (622)
T ss_dssp ---CCTTCCEEEECSC-CCCCCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCS---SCCSCCCCCCTTCCEEECCS
T ss_pred ---CCCCCCEEECcCC-cCCCCCCCCCCcCEEECCCCCCCcCC-CCCCCCCEEECcC---CcCCCcCCccCCCCEEECCC
Confidence 5577888887776 3444332100 000000 0000111111111 0000000000000
Q ss_pred -------ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccc
Q 021510 152 -------VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQ 224 (311)
Q Consensus 152 -------~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 224 (311)
..+++|+.|++++|+++.+ |. .+++|+.|++.++ .+..+ + ..+++|++|++++|. ++
T Consensus 171 N~l~~l~~~~~~L~~L~Ls~N~l~~l------~~---~~~~L~~L~L~~N-~l~~l-~----~~~~~L~~L~Ls~N~-L~ 234 (622)
T 3g06_A 171 NQLTSLPMLPSGLQELSVSDNQLASL------PT---LPSELYKLWAYNN-RLTSL-P----ALPSGLKELIVSGNR-LT 234 (622)
T ss_dssp SCCSCCCCCCTTCCEEECCSSCCSCC------CC---CCTTCCEEECCSS-CCSSC-C----CCCTTCCEEECCSSC-CS
T ss_pred CCCCCCcccCCCCcEEECCCCCCCCC------CC---ccchhhEEECcCC-ccccc-C----CCCCCCCEEEccCCc-cC
Confidence 0112333333333332222 11 1133444444442 22222 1 123556666666654 44
Q ss_pred eecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCccccccccc
Q 021510 225 EIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL 304 (311)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~ 304 (311)
.++ ..+++|+.|+++++ +++.++. .+++|++|++++| +++.+|..+........+.+..+.+
T Consensus 235 ~lp-----------~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 235 SLP-----------VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCC-----------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred cCC-----------CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 432 11677888888775 5666654 3577888888887 6667787777766777777766654
No 84
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.29 E-value=7.6e-12 Score=101.49 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=102.0
Q ss_pred cCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccc
Q 021510 32 ESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFC 111 (311)
Q Consensus 32 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 111 (311)
+.+++|++|+++++ .++.+ +.+..+++|++|++++| .+..++ .+..+++|++|+++++ .++...
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l---~~l~~l~~L~~L~l~~n-~~~~~~----------~l~~l~~L~~L~l~~n-~l~~~~ 104 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDL---TGIEYAHNIKDLTINNI-HATNYN----------PISGLSNLERLRIMGK-DVTSDK 104 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCC---TTGGGCTTCSEEEEESC-CCSCCG----------GGTTCTTCCEEEEECT-TCBGGG
T ss_pred hhcCCccEEeccCC-CccCh---HHHhcCCCCCEEEccCC-CCCcch----------hhhcCCCCCEEEeECC-ccCccc
Confidence 56778888888875 45554 24677888888888887 444332 3456788888888876 343311
Q ss_pred cCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEE
Q 021510 112 CEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIV 191 (311)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i 191 (311)
. ..+..+++|++|++++|+++.. .+..+..+++|++|++
T Consensus 105 ~------------------------------------~~l~~l~~L~~L~Ls~n~i~~~-----~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 105 I------------------------------------PNLSGLTSLTLLDISHSAHDDS-----ILTKINTLPKVNSIDL 143 (197)
T ss_dssp S------------------------------------CCCTTCTTCCEEECCSSBCBGG-----GHHHHTTCSSCCEEEC
T ss_pred C------------------------------------hhhcCCCCCCEEEecCCccCcH-----hHHHHhhCCCCCEEEc
Confidence 1 1123368888888888876642 1234567788999999
Q ss_pred ecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccC
Q 021510 192 WHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDL 252 (311)
Q Consensus 192 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 252 (311)
++|..+..+ + .+..+++|++|++++|. ++.+. . ...+++|+.|++++.
T Consensus 144 ~~n~~i~~~-~--~l~~l~~L~~L~l~~n~-i~~~~---~------l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 144 SYNGAITDI-M--PLKTLPELKSLNIQFDG-VHDYR---G------IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSCTBCCCC-G--GGGGCSSCCEEECTTBC-CCCCT---T------GGGCSSCCEEEECBC
T ss_pred cCCCCcccc-H--hhcCCCCCCEEECCCCC-CcChH---H------hccCCCCCEEEeeCc
Confidence 887656665 3 36778899999998886 66542 1 122888999988874
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.28 E-value=4.7e-12 Score=110.17 Aligned_cols=136 Identities=18% Similarity=0.124 Sum_probs=69.7
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCcc--ccchHHHhccCCCcEEEEccccccceeccccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKY--IFSASMIRSLKQLQRLEICSCEDLQEIISENR 231 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~--~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 231 (311)
+++|++|++++|++..+ .+..+..+++|++|+++++.-... +.+...+..+++|++|++++|. ++.+.....
T Consensus 144 ~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~ 217 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAF-----SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCA 217 (310)
T ss_dssp CSCCCEEEEECCSSCCC-----CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHH
T ss_pred ccCCCEEEeeCCCcchh-----hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHH
Confidence 56777777777766544 134456677777777777543321 1011113456777777777775 543321000
Q ss_pred ccCcCCcccCCccCeEecccCcccccc-cCCCcc-cCCCcccEEEEecCCCccccccccccCCCCCcccccccc
Q 021510 232 TDQVIPYFVFPQLTTLKLQDLPKLRCL-YPGMHS-SEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQ 303 (311)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~c~~L~~l-~~~~~~-~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~ 303 (311)
. .+..+++|++|+++++ .++.. +..... ..+++|++|++++| +++.+|..+. .....+.++.++
T Consensus 218 ~----l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N~ 283 (310)
T 4glp_A 218 A----LAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSNR 283 (310)
T ss_dssp H----HHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSCC
T ss_pred H----HHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCCc
Confidence 0 0011567777777764 34443 322200 11256777777665 4456665543 334444444443
No 86
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.27 E-value=5.9e-12 Score=102.15 Aligned_cols=152 Identities=18% Similarity=0.275 Sum_probs=109.4
Q ss_pred hccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccCCCCCCCCCCccccccccccccccc
Q 021510 58 KCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSS 137 (311)
Q Consensus 58 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~ 137 (311)
..+++|++|+++++ .+..++ ++..+++|++|+++++ .++.++
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~----------~l~~l~~L~~L~l~~n-~~~~~~-------------------------- 82 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT----------GIEYAHNIKDLTINNI-HATNYN-------------------------- 82 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT----------TGGGCTTCSEEEEESC-CCSCCG--------------------------
T ss_pred hhcCCccEEeccCC-CccChH----------HHhcCCCCCEEEccCC-CCCcch--------------------------
Confidence 56889999999886 344443 3457889999999988 444332
Q ss_pred ccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEE
Q 021510 138 EITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEI 217 (311)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l 217 (311)
.+..+++|++|++++|+++.. .+..++.+++|+.|+++++ .+....+ ..+..+++|++|++
T Consensus 83 ------------~l~~l~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~Ls~n-~i~~~~~-~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 83 ------------PISGLSNLERLRIMGKDVTSD-----KIPNLSGLTSLTLLDISHS-AHDDSIL-TKINTLPKVNSIDL 143 (197)
T ss_dssp ------------GGTTCTTCCEEEEECTTCBGG-----GSCCCTTCTTCCEEECCSS-BCBGGGH-HHHTTCSSCCEEEC
T ss_pred ------------hhhcCCCCCEEEeECCccCcc-----cChhhcCCCCCCEEEecCC-ccCcHhH-HHHhhCCCCCEEEc
Confidence 123478999999999977652 1456778899999999996 4444323 34788999999999
Q ss_pred ccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 218 CSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 218 ~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
++|..++.+.. +..+++|+.|++++| .++.++ .. ..+++|++|++.+++
T Consensus 144 ~~n~~i~~~~~---------l~~l~~L~~L~l~~n-~i~~~~-~l--~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 144 SYNGAITDIMP---------LKTLPELKSLNIQFD-GVHDYR-GI--EDFPKLNQLYAFSQT 192 (197)
T ss_dssp CSCTBCCCCGG---------GGGCSSCCEEECTTB-CCCCCT-TG--GGCSSCCEEEECBC-
T ss_pred cCCCCccccHh---------hcCCCCCCEEECCCC-CCcChH-Hh--ccCCCCCEEEeeCcc
Confidence 99975666531 122899999999986 456654 22 468999999998865
No 87
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.27 E-value=8.2e-11 Score=107.77 Aligned_cols=83 Identities=22% Similarity=0.168 Sum_probs=57.4
Q ss_pred cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510 6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD 85 (311)
Q Consensus 6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 85 (311)
.+++|++|+++++ .++.+ +.++.+++|++|++++|. ++.+ +. ..++|++|++++| .+..++
T Consensus 171 ~~~~L~~L~L~~n-~l~~l----~~~~~l~~L~~L~l~~N~-l~~l--~~---~~~~L~~L~l~~n-~l~~lp------- 231 (454)
T 1jl5_A 171 LPPSLEFIAAGNN-QLEEL----PELQNLPFLTAIYADNNS-LKKL--PD---LPLSLESIVAGNN-ILEELP------- 231 (454)
T ss_dssp CCTTCCEEECCSS-CCSSC----CCCTTCTTCCEEECCSSC-CSSC--CC---CCTTCCEEECCSS-CCSSCC-------
T ss_pred CcccccEEECcCC-cCCcC----ccccCCCCCCEEECCCCc-CCcC--CC---CcCcccEEECcCC-cCCccc-------
Confidence 3468999999996 46664 356889999999998864 4444 11 2358999999887 344544
Q ss_pred cccceeeecccceEecCCCCCccccc
Q 021510 86 NAIEKIEFAQLRSLSLGNLPEVTSFC 111 (311)
Q Consensus 86 ~~~~~~~l~~L~~L~l~~~~~l~~l~ 111 (311)
.+..+++|++|+++++ .++.++
T Consensus 232 ---~~~~l~~L~~L~l~~N-~l~~l~ 253 (454)
T 1jl5_A 232 ---ELQNLPFLTTIYADNN-LLKTLP 253 (454)
T ss_dssp ---CCTTCTTCCEEECCSS-CCSSCC
T ss_pred ---ccCCCCCCCEEECCCC-cCCccc
Confidence 2446788888888876 444443
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.26 E-value=2.6e-12 Score=121.54 Aligned_cols=190 Identities=17% Similarity=0.259 Sum_probs=137.4
Q ss_pred cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510 6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD 85 (311)
Q Consensus 6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 85 (311)
.|..+..+.+.+. .+.+ ......+++|+.|++++|. +..+ +.+..+++|++|++++|. +..++
T Consensus 19 ~l~~l~~l~l~~~-~i~~----~~~~~~L~~L~~L~l~~n~-i~~l---~~l~~l~~L~~L~Ls~N~-l~~~~------- 81 (605)
T 1m9s_A 19 AFAETIKDNLKKK-SVTD----AVTQNELNSIDQIIANNSD-IKSV---QGIQYLPNVTKLFLNGNK-LTDIK------- 81 (605)
T ss_dssp HHHHHHHHHTTCS-CTTS----EECHHHHTTCCCCBCTTCC-CCCC---TTGGGCTTCCEEECTTSC-CCCCG-------
T ss_pred HHHHHHHHhccCC-Cccc----ccchhcCCCCCEEECcCCC-CCCC---hHHccCCCCCEEEeeCCC-CCCCh-------
Confidence 3344445555542 2333 2345678999999999864 5555 357889999999999974 44443
Q ss_pred cccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee
Q 021510 86 NAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI 165 (311)
Q Consensus 86 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (311)
.+..+++|+.|+++++ .+..++ .+..+++|+.|++++|
T Consensus 82 ---~l~~l~~L~~L~Ls~N-~l~~l~--------------------------------------~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 82 ---PLTNLKNLGWLFLDEN-KIKDLS--------------------------------------SLKDLKKLKSLSLEHN 119 (605)
T ss_dssp ---GGGGCTTCCEEECCSS-CCCCCT--------------------------------------TSTTCTTCCEEECTTS
T ss_pred ---hhccCCCCCEEECcCC-CCCCCh--------------------------------------hhccCCCCCEEEecCC
Confidence 2457899999999987 444432 1234799999999999
Q ss_pred eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccC
Q 021510 166 NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLT 245 (311)
Q Consensus 166 ~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~ 245 (311)
.+..+ ..+..+++|+.|++++| .+..+ ..+..+++|+.|++++|. +..+.. . ..+++|+
T Consensus 120 ~l~~l-------~~l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~---l------~~l~~L~ 178 (605)
T 1m9s_A 120 GISDI-------NGLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---L------AGLTKLQ 178 (605)
T ss_dssp CCCCC-------GGGGGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSSC-CCCCGG---G------TTCTTCC
T ss_pred CCCCC-------ccccCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCCc-CCCchh---h------ccCCCCC
Confidence 87765 34678899999999996 45544 247889999999999997 666532 1 2289999
Q ss_pred eEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 246 TLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 246 ~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
.|++++| .+..++. ...+++|+.|++.+|+
T Consensus 179 ~L~Ls~N-~i~~l~~---l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 179 NLYLSKN-HISDLRA---LAGLKNLDVLELFSQE 208 (605)
T ss_dssp EEECCSS-CCCBCGG---GTTCTTCSEEECCSEE
T ss_pred EEECcCC-CCCCChH---HccCCCCCEEEccCCc
Confidence 9999986 5666532 2578999999999875
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.25 E-value=5.2e-11 Score=100.29 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=117.5
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
+-.+++++|+++++. ++.+. ...++.+++|++|+++++ .++.+ ++..+..+++|++|+++++. +..++.
T Consensus 32 ~~~~~l~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~----- 100 (251)
T 3m19_A 32 GIPADTEKLDLQSTG-LATLS--DATFRGLTKLTWLNLDYN-QLQTL-SAGVFDDLTELGTLGLANNQ-LASLPL----- 100 (251)
T ss_dssp CCCTTCCEEECTTSC-CCCCC--TTTTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCT-----
T ss_pred CCCCCCCEEEccCCC-cCccC--HhHhcCcccCCEEECCCC-cCCcc-CHhHhccCCcCCEEECCCCc-ccccCh-----
Confidence 334689999999964 66642 335688999999999996 56654 24557889999999999964 444442
Q ss_pred ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE 164 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (311)
..+..+++|++|+++++ .++.++.. .+..+++|++|++++
T Consensus 101 ---~~~~~l~~L~~L~L~~N-~l~~~~~~------------------------------------~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 101 ---GVFDHLTQLDKLYLGGN-QLKSLPSG------------------------------------VFDRLTKLKELRLNT 140 (251)
T ss_dssp ---TTTTTCTTCCEEECCSS-CCCCCCTT------------------------------------TTTTCTTCCEEECCS
T ss_pred ---hHhcccCCCCEEEcCCC-cCCCcChh------------------------------------HhccCCcccEEECcC
Confidence 13356799999999987 56554431 113378999999999
Q ss_pred eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510 165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE 221 (311)
Q Consensus 165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 221 (311)
|+++.+ .+..+..+++|+.|+++++ .+..+ +...+..+++|++|++++++
T Consensus 141 N~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 141 NQLQSI-----PAGAFDKLTNLQTLSLSTN-QLQSV-PHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp SCCCCC-----CTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSCC
T ss_pred CcCCcc-----CHHHcCcCcCCCEEECCCC-cCCcc-CHHHHhCCCCCCEEEeeCCc
Confidence 988876 1235778899999999995 56656 44447889999999999987
No 90
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.22 E-value=1.8e-10 Score=105.50 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=22.0
Q ss_pred CCccEEEEcCCCCCcccccchhhhccCcccEEEEccc
Q 021510 35 NQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINC 71 (311)
Q Consensus 35 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 71 (311)
++|++|+++++ .++.+ + .++.+++|++|+++++
T Consensus 131 ~~L~~L~L~~n-~l~~l--p-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKL--P-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp TTCCEEECCSS-CCSSC--C-CCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCC-CCCCC--c-ccCCCCCCCEEECCCC
Confidence 57777777775 44444 2 3667777777777775
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.22 E-value=5e-13 Score=126.35 Aligned_cols=118 Identities=13% Similarity=0.080 Sum_probs=64.9
Q ss_pred CCCccEEEeeee----eceeeeccCCCCCCCCCCCcccEEEEecCCC-CccccchHHHhccCCCcEEEEccccccceecc
Q 021510 154 LPNLEVLEISEI----NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHK-LKYIFSASMIRSLKQLQRLEICSCEDLQEIIS 228 (311)
Q Consensus 154 l~~L~~L~l~~~----~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 228 (311)
+++|++|++.++ .++........+..+..+++|++|++++|.+ +...........+++|++|++++|. +++...
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~ 480 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL 480 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH
Confidence 677888887642 3433200000001123467888888877653 3333233333457788888888776 433111
Q ss_pred cccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 229 ENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 229 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
...... +++|+.|++++|+ ++..........+++|++|++++|.
T Consensus 481 ~~~~~~------~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 481 MEFSRG------CPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHTC------CTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHhc------CcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 111111 7888888888887 4432211112357888888888887
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.21 E-value=2.3e-12 Score=121.83 Aligned_cols=93 Identities=14% Similarity=0.194 Sum_probs=61.8
Q ss_pred cCCcccEEeeccccccccccccc------------ccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccc
Q 021510 6 AFPLLQSLILHNLINMERLCIDR------------LKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSK 73 (311)
Q Consensus 6 ~l~~L~~L~L~~~~~l~~l~~~~------------~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~ 73 (311)
.|++|++|++.++....+....+ .-...+++|++|++++|. +....+......+++|++|++.+|..
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 47899999999987665432110 012467899999999985 54432223333689999999999865
Q ss_pred cce--ecccccccccccceeeecccceEecCCCCCccc
Q 021510 74 MKE--IFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTS 109 (311)
Q Consensus 74 l~~--~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 109 (311)
+.. +.. ....+++|++|++++|. +++
T Consensus 143 ~~~~~l~~---------~~~~~~~L~~L~L~~~~-i~~ 170 (594)
T 2p1m_B 143 FSTDGLAA---------IAATCRNLKELDLRESD-VDD 170 (594)
T ss_dssp EEHHHHHH---------HHHHCTTCCEEECTTCE-EEC
T ss_pred CCHHHHHH---------HHHhCCCCCEEeCcCCc-cCC
Confidence 543 211 12367899999999885 443
No 93
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.18 E-value=3.6e-10 Score=107.24 Aligned_cols=111 Identities=23% Similarity=0.284 Sum_probs=77.8
Q ss_pred ccCCCccEEEeeeee-ceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccc
Q 021510 152 VALPNLEVLEISEIN-VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISEN 230 (311)
Q Consensus 152 ~~l~~L~~L~l~~~~-l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 230 (311)
..+++|+.|++++|+ ...+ .|..+..+++|++|++++| .++.+.+ ..+..+++|++|+++++. ++.+...
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~-----~~~~~~~l~~L~~L~Ls~N-~L~~l~~-~~f~~l~~L~~L~Ls~N~-l~~l~~~- 536 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENF-----LPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMSHNN-FFSLDTF- 536 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGE-----ECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTSC-CCBCCCG-
T ss_pred ccchhhhhhhhhhccccccc-----CchhhhhccccCEEECCCC-ccCCcCh-HHHcCCCCCCEEECCCCc-CCCCChh-
Confidence 346888999998883 3333 1456778889999999996 5666634 347889999999999986 7666321
Q ss_pred cccCcCCcccCCccCeEecccCcccccccCCCcccCC-CcccEEEEecCC
Q 021510 231 RTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEW-PALEILLVYGCD 279 (311)
Q Consensus 231 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~-~~L~~L~i~~c~ 279 (311)
. +..+++|+.|+++++ +++.++..... .+ ++|++|++.++|
T Consensus 537 ~------~~~l~~L~~L~Ls~N-~l~~~~~~~l~-~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 537 P------YKCLNSLQVLDYSLN-HIMTSKKQELQ-HFPSSLAFLNLTQND 578 (635)
T ss_dssp G------GTTCTTCCEEECTTS-CCCBCCSSCTT-CCCTTCCEEECTTCC
T ss_pred H------HhCCCCCCEEECCCC-cCCCCCHHHHH-hhhCcCCEEEeeCCC
Confidence 1 122889999999884 56666554422 34 679999998744
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.17 E-value=1.8e-11 Score=103.89 Aligned_cols=166 Identities=14% Similarity=0.203 Sum_probs=88.3
Q ss_pred cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510 6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD 85 (311)
Q Consensus 6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 85 (311)
.+.++..+++.+. .++++ ..+..+++|++|+++++ .++.+ +.+..+++|++|+++++ .+..++
T Consensus 17 ~l~~l~~l~l~~~-~i~~~----~~~~~l~~L~~L~l~~n-~i~~l---~~l~~l~~L~~L~L~~N-~i~~~~------- 79 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-SVTDL----VSQKELSGVQNFNGDNS-NIQSL---AGMQFFTNLKELHLSHN-QISDLS------- 79 (263)
T ss_dssp HHHHHHHHHHTCS-CTTSE----ECHHHHTTCSEEECTTS-CCCCC---TTGGGCTTCCEEECCSS-CCCCCG-------
T ss_pred HHHHHHHHHhcCC-Ccccc----cchhhcCcCcEEECcCC-Ccccc---hHHhhCCCCCEEECCCC-ccCCCh-------
Confidence 3445555555553 34443 23456677777777775 45554 24566777777777765 344333
Q ss_pred cccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee
Q 021510 86 NAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI 165 (311)
Q Consensus 86 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (311)
.+..+++|++|+++++ .++.++.. . .++|++|++++|
T Consensus 80 ---~l~~l~~L~~L~L~~N-~l~~l~~~--------------------------------------~-~~~L~~L~L~~N 116 (263)
T 1xeu_A 80 ---PLKDLTKLEELSVNRN-RLKNLNGI--------------------------------------P-SACLSRLFLDNN 116 (263)
T ss_dssp ---GGTTCSSCCEEECCSS-CCSCCTTC--------------------------------------C-CSSCCEEECCSS
T ss_pred ---hhccCCCCCEEECCCC-ccCCcCcc--------------------------------------c-cCcccEEEccCC
Confidence 1345667777777765 34333210 0 155666666666
Q ss_pred eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccC
Q 021510 166 NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLT 245 (311)
Q Consensus 166 ~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~ 245 (311)
+++.+ +.+..+++|+.|+++++ .++.+ + .+..+++|++|++++|. ++.+ ... ..+++|+
T Consensus 117 ~l~~~-------~~l~~l~~L~~L~Ls~N-~i~~~-~--~l~~l~~L~~L~L~~N~-i~~~---~~l------~~l~~L~ 175 (263)
T 1xeu_A 117 ELRDT-------DSLIHLKNLEILSIRNN-KLKSI-V--MLGFLSKLEVLDLHGNE-ITNT---GGL------TRLKKVN 175 (263)
T ss_dssp CCSBS-------GGGTTCTTCCEEECTTS-CCCBC-G--GGGGCTTCCEEECTTSC-CCBC---TTS------TTCCCCC
T ss_pred ccCCC-------hhhcCcccccEEECCCC-cCCCC-h--HHccCCCCCEEECCCCc-Ccch---HHh------ccCCCCC
Confidence 55543 12445556666666663 34433 2 24556666666666664 4433 111 1155666
Q ss_pred eEecccC
Q 021510 246 TLKLQDL 252 (311)
Q Consensus 246 ~L~l~~c 252 (311)
.|+++++
T Consensus 176 ~L~l~~N 182 (263)
T 1xeu_A 176 WIDLTGQ 182 (263)
T ss_dssp EEEEEEE
T ss_pred EEeCCCC
Confidence 6666553
No 95
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.16 E-value=4.2e-12 Score=119.96 Aligned_cols=95 Identities=13% Similarity=0.117 Sum_probs=55.8
Q ss_pred cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCccccc---chhhhccCcccEEEEccccccceeccccc
Q 021510 6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFW---FSTTKCLPRLERIAVINCSKMKEIFSIGE 82 (311)
Q Consensus 6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 82 (311)
.+++|++|++.+|..+..... ......+++|++|++++|. +++..+ ......+++|++|++++|. ..+.....
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l 203 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGL-AAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSAL 203 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHH-HHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHH-HHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHH
Confidence 478999999999866554110 1122467899999998876 443211 2233467788999888875 11110000
Q ss_pred ccccccceeeecccceEecCCCCCcc
Q 021510 83 EVDNAIEKIEFAQLRSLSLGNLPEVT 108 (311)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~l~~~~~l~ 108 (311)
......+++|++|++.+|..++
T Consensus 204 ----~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 204 ----ERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp ----HHHHHHCTTCCEEECCTTSCHH
T ss_pred ----HHHHHhCCCCcEEecCCCCcHH
Confidence 0011246888888888774433
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.13 E-value=8.2e-12 Score=111.95 Aligned_cols=251 Identities=13% Similarity=0.039 Sum_probs=134.5
Q ss_pred cCCcccEEeeccccccccccc--ccccccCCCCccEEEEcCC--CCCcccccch------hhhccCcccEEEEccccccc
Q 021510 6 AFPLLQSLILHNLINMERLCI--DRLKVESFNQLKNIEAYNC--DKLSNIFWFS------TTKCLPRLERIAVINCSKMK 75 (311)
Q Consensus 6 ~l~~L~~L~L~~~~~l~~l~~--~~~~~~~l~~L~~L~l~~c--~~l~~~~~~~------~~~~l~~L~~L~i~~c~~l~ 75 (311)
.+++|++|+++++. +..... ....+..+++|++|++++| .++....|.. .+..+++|++|+++++.--.
T Consensus 30 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred cCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 45789999999874 444211 0123567899999999887 3333322211 23578899999998874322
Q ss_pred ----eecccccccccccceeeecccceEecCCCCCccccccCCCCCCCCCCccc---------ccccccccccccccccc
Q 021510 76 ----EIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQV---------SQEESTAMYCSSEITLD 142 (311)
Q Consensus 76 ----~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~---------~~~~~l~l~~~~~~~~~ 142 (311)
.++ ..+..+++|++|++++|. ++........... ... ..+..+.+.. +.+.
T Consensus 109 ~~~~~l~---------~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l---~~l~~~~~~~~~~~L~~L~L~~---n~l~ 172 (386)
T 2ca6_A 109 TAQEPLI---------DFLSKHTPLEHLYLHNNG-LGPQAGAKIARAL---QELAVNKKAKNAPPLRSIICGR---NRLE 172 (386)
T ss_dssp TTHHHHH---------HHHHHCTTCCEEECCSSC-CHHHHHHHHHHHH---HHHHHHHHHHTCCCCCEEECCS---SCCT
T ss_pred HHHHHHH---------HHHHhCCCCCEEECcCCC-CCHHHHHHHHHHH---HHHhhhhhcccCCCCcEEECCC---CCCC
Confidence 111 133567889999998873 4322110000000 000 0111122211 1111
Q ss_pred --cccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCc----cccchHHHhccCCCcEEE
Q 021510 143 --ISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLK----YIFSASMIRSLKQLQRLE 216 (311)
Q Consensus 143 --~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~----~~~~~~~~~~l~~L~~L~ 216 (311)
....+...+..+++|++|++++|+++........+..+..+++|+.|++++|. ++ ...+. .+..+++|++|+
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~-~l~~~~~L~~L~ 250 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAI-ALKSWPNLRELG 250 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHH-HGGGCTTCCEEE
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHH-HHccCCCcCEEE
Confidence 11111123345788999999988665211000012255677889999998864 42 11133 367788899999
Q ss_pred EccccccceecccccccCcCCcccCCccCeEecccCccccc-----ccCCCcccCCCcccEEEEecCC
Q 021510 217 ICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRC-----LYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 217 l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~-----l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
+++|. +....... .........+++|+.|++++|. ++. ++... ...+++|++|++.+|+
T Consensus 251 L~~n~-i~~~~~~~-l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l-~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 251 LNDCL-LSARGAAA-VVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVI-DEKMPDLLFLELNGNR 314 (386)
T ss_dssp CTTCC-CCHHHHHH-HHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHH-HHHCTTCCEEECTTSB
T ss_pred CCCCC-CchhhHHH-HHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHH-HhcCCCceEEEccCCc
Confidence 99887 54331000 0000000117889999998864 444 43221 1247889999998875
No 97
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.12 E-value=3.5e-10 Score=107.31 Aligned_cols=87 Identities=21% Similarity=0.262 Sum_probs=52.0
Q ss_pred ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccc
Q 021510 152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENR 231 (311)
Q Consensus 152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 231 (311)
..+++|++|++++|+++.+ .|..+..+++|+.|+++++ +++.+.+ ..+..+++|++|+++++. +..+... .
T Consensus 491 ~~l~~L~~L~Ls~N~L~~l-----~~~~f~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~-~ 561 (635)
T 4g8a_A 491 TELRNLTFLDLSQCQLEQL-----SPTAFNSLSSLQVLNMSHN-NFFSLDT-FPYKCLNSLQVLDYSLNH-IMTSKKQ-E 561 (635)
T ss_dssp TTCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTTS-CCCBCCC-GGGTTCTTCCEEECTTSC-CCBCCSS-C
T ss_pred hhccccCEEECCCCccCCc-----ChHHHcCCCCCCEEECCCC-cCCCCCh-hHHhCCCCCCEEECCCCc-CCCCCHH-H
Confidence 4467777777777777666 2344667777777777774 5555533 336667777777777775 5554321 1
Q ss_pred ccCcCCcccCCccCeEecccC
Q 021510 232 TDQVIPYFVFPQLTTLKLQDL 252 (311)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~c 252 (311)
... ..++|+.|+++++
T Consensus 562 l~~-----l~~~L~~L~L~~N 577 (635)
T 4g8a_A 562 LQH-----FPSSLAFLNLTQN 577 (635)
T ss_dssp TTC-----CCTTCCEEECTTC
T ss_pred HHh-----hhCcCCEEEeeCC
Confidence 111 0256777777653
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.06 E-value=4.8e-10 Score=95.10 Aligned_cols=146 Identities=22% Similarity=0.275 Sum_probs=111.9
Q ss_pred ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
..+++|++|+++++ +++.+ +.++.+++|++|+++++ .++.+. . +..+++|++|+++++ .+..++.
T Consensus 38 ~~l~~L~~L~l~~n-~i~~l----~~l~~l~~L~~L~L~~N-~i~~~~--~-l~~l~~L~~L~L~~N-~l~~l~~----- 102 (263)
T 1xeu_A 38 KELSGVQNFNGDNS-NIQSL----AGMQFFTNLKELHLSHN-QISDLS--P-LKDLTKLEELSVNRN-RLKNLNG----- 102 (263)
T ss_dssp HHHTTCSEEECTTS-CCCCC----TTGGGCTTCCEEECCSS-CCCCCG--G-GTTCSSCCEEECCSS-CCSCCTT-----
T ss_pred hhcCcCcEEECcCC-Ccccc----hHHhhCCCCCEEECCCC-ccCCCh--h-hccCCCCCEEECCCC-ccCCcCc-----
Confidence 45789999999997 46664 35688999999999996 566662 2 788999999999996 4444442
Q ss_pred ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE 164 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (311)
... ++|++|+++++ .++.++. +..+++|++|++++
T Consensus 103 -----~~~-~~L~~L~L~~N-~l~~~~~--------------------------------------l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 103 -----IPS-ACLSRLFLDNN-ELRDTDS--------------------------------------LIHLKNLEILSIRN 137 (263)
T ss_dssp -----CCC-SSCCEEECCSS-CCSBSGG--------------------------------------GTTCTTCCEEECTT
T ss_pred -----ccc-CcccEEEccCC-ccCCChh--------------------------------------hcCcccccEEECCC
Confidence 223 89999999997 4554321 23479999999999
Q ss_pred eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510 165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE 221 (311)
Q Consensus 165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 221 (311)
|+++.+ +.+..+++|+.|+++++ .+..+ ..+..+++|+.|++++++
T Consensus 138 N~i~~~-------~~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 138 NKLKSI-------VMLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp SCCCBC-------GGGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred CcCCCC-------hHHccCCCCCEEECCCC-cCcch---HHhccCCCCCEEeCCCCc
Confidence 988876 24667889999999996 55544 236789999999999987
No 99
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.06 E-value=5.3e-11 Score=112.43 Aligned_cols=252 Identities=10% Similarity=-0.051 Sum_probs=121.2
Q ss_pred CCc-ccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccc---cchhhhccCcccEEEEccccccceeccccc
Q 021510 7 FPL-LQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIF---WFSTTKCLPRLERIAVINCSKMKEIFSIGE 82 (311)
Q Consensus 7 l~~-L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 82 (311)
++. |++|++.+|........ ......+++|++|++++|. +.+.. .......+++|++|+++++..- .+.....
T Consensus 136 ~~~~L~~L~L~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~-~~~~~~l 212 (592)
T 3ogk_B 136 RADDLETLKLDKCSGFTTDGL-LSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFA-KISPKDL 212 (592)
T ss_dssp HGGGCCEEEEESCEEEEHHHH-HHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCS-SCCHHHH
T ss_pred ccccCcEEECcCCCCcCHHHH-HHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCC-ccCHHHH
Confidence 445 88888888764432100 1112367888888888874 22221 1234556778888887665321 1000000
Q ss_pred ccccccceeeecccceEecCCCCCccccc-------------cCCCCCC---CC---CCccccccccccccccccccccc
Q 021510 83 EVDNAIEKIEFAQLRSLSLGNLPEVTSFC-------------CEVETPS---AS---PNRQVSQEESTAMYCSSEITLDI 143 (311)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-------------~~~~~~~---~~---~~~~~~~~~~l~l~~~~~~~~~~ 143 (311)
......+++|++|++.+|. +..++ .+..... .. .......+..+.+....
T Consensus 213 ----~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~------ 281 (592)
T 3ogk_B 213 ----ETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG------ 281 (592)
T ss_dssp ----HHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC------
T ss_pred ----HHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc------
Confidence 0012345777777777652 22211 1100000 00 00000001111111100
Q ss_pred ccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcc----
Q 021510 144 STLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICS---- 219 (311)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~---- 219 (311)
...+......+++|++|++++|.++.... +..+..+++|++|++.++ +.+.........+++|++|++++
T Consensus 282 ~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~----~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~L~~g~~~ 355 (592)
T 3ogk_B 282 PNEMPILFPFAAQIRKLDLLYALLETEDH----CTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADE 355 (592)
T ss_dssp TTTGGGGGGGGGGCCEEEETTCCCCHHHH----HHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECCCCS
T ss_pred hhHHHHHHhhcCCCcEEecCCCcCCHHHH----HHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEEEeecCccc
Confidence 00011112346778888887775332100 111346677888888742 22221223345677888888885
Q ss_pred ------ccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEec---CCCccccc
Q 021510 220 ------CEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYG---CDKLKIFA 285 (311)
Q Consensus 220 ------c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~---c~~l~~lp 285 (311)
|..++....... ...+++|++|.+ .|..++..........+++|++|++.+ |.+++..|
T Consensus 356 ~~~~~~~~~~~~~~~~~l------~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 356 QGMEDEEGLVSQRGLIAL------AQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp STTSSTTCCCCHHHHHHH------HHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred cccccccCccCHHHHHHH------HhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 654543211100 012788888888 556665543222223478899999984 66777643
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.04 E-value=5.5e-10 Score=91.12 Aligned_cols=134 Identities=15% Similarity=0.132 Sum_probs=71.5
Q ss_pred CCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCcccccc
Q 021510 33 SFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCC 112 (311)
Q Consensus 33 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 112 (311)
..++|++|+++++ .++.+ ++..+..+++|++|+++++ .+..++. ..+..+++|++|+++++ .++.++.
T Consensus 26 ~~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~--------~~~~~l~~L~~L~Ls~n-~l~~~~~ 93 (208)
T 2o6s_A 26 IPAQTTYLDLETN-SLKSL-PNGVFDELTSLTQLYLGGN-KLQSLPN--------GVFNKLTSLTYLNLSTN-QLQSLPN 93 (208)
T ss_dssp CCTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSS-CCCCCCT--------TTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCCcEEEcCCC-ccCcC-ChhhhcccccCcEEECCCC-ccCccCh--------hhcCCCCCcCEEECCCC-cCCccCH
Confidence 3467777777775 34443 2234556777777777764 3333331 11234566777776665 3333222
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEe
Q 021510 113 EVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVW 192 (311)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~ 192 (311)
. .+..+++|++|++++|+++.+ .+..+..+++|+.|+++
T Consensus 94 ~------------------------------------~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 94 G------------------------------------VFDKLTQLKELALNTNQLQSL-----PDGVFDKLTQLKDLRLY 132 (208)
T ss_dssp T------------------------------------TTTTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECC
T ss_pred h------------------------------------HhcCccCCCEEEcCCCcCccc-----CHhHhccCCcCCEEECC
Confidence 1 012256666677666655544 11224556666666666
Q ss_pred cCCCCccccchHHHhccCCCcEEEEcccc
Q 021510 193 HCHKLKYIFSASMIRSLKQLQRLEICSCE 221 (311)
Q Consensus 193 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 221 (311)
++ .+..+ +...+..+++|++|++++++
T Consensus 133 ~N-~l~~~-~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 133 QN-QLKSV-PDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SS-CCSCC-CTTTTTTCTTCCEEECCSCC
T ss_pred CC-cccee-CHHHhccCCCccEEEecCCC
Confidence 64 34434 33334556666666666664
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.03 E-value=1.3e-09 Score=89.87 Aligned_cols=151 Identities=12% Similarity=0.110 Sum_probs=93.4
Q ss_pred cEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccce
Q 021510 11 QSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEK 90 (311)
Q Consensus 11 ~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 90 (311)
+++++++. +++.++. .-.+.+++|+++++ .++.+.+...+..+++|++|+++++. +..++. ..+
T Consensus 14 ~~l~~s~n-~l~~iP~-----~~~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~--------~~~ 77 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPE-----HIPQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEE--------GAF 77 (220)
T ss_dssp TEEECCSS-CCSSCCS-----CCCTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECT--------TTT
T ss_pred CEeEeCCC-CcccCcc-----CCCCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECH--------HHh
Confidence 45666663 3555421 22356788888875 45555333456778888888887753 444442 124
Q ss_pred eeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceee
Q 021510 91 IEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQI 170 (311)
Q Consensus 91 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i 170 (311)
..+++|++|+++++ .++.++.. .+..+++|++|++++|+++.+
T Consensus 78 ~~l~~L~~L~Ls~N-~l~~~~~~------------------------------------~~~~l~~L~~L~Ls~N~l~~~ 120 (220)
T 2v70_A 78 EGASGVNEILLTSN-RLENVQHK------------------------------------MFKGLESLKTLMLRSNRITCV 120 (220)
T ss_dssp TTCTTCCEEECCSS-CCCCCCGG------------------------------------GGTTCSSCCEEECTTSCCCCB
T ss_pred CCCCCCCEEECCCC-ccCccCHh------------------------------------HhcCCcCCCEEECCCCcCCeE
Confidence 45677888888776 34433221 123367888888888877665
Q ss_pred eccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510 171 WHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE 221 (311)
Q Consensus 171 ~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 221 (311)
.|..+..+++|+.|+++++ .++.+.+ ..+..+++|++|++++++
T Consensus 121 -----~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 121 -----GNDSFIGLSSVRLLSLYDN-QITTVAP-GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp -----CTTSSTTCTTCSEEECTTS-CCCCBCT-TTTTTCTTCCEEECCSCC
T ss_pred -----CHhHcCCCccCCEEECCCC-cCCEECH-HHhcCCCCCCEEEecCcC
Confidence 2345667778888888774 5554523 336677788888887776
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.03 E-value=1.2e-09 Score=102.45 Aligned_cols=191 Identities=14% Similarity=0.126 Sum_probs=123.9
Q ss_pred cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510 9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI 88 (311)
Q Consensus 9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 88 (311)
+|++|+++++ +++.++. +-+++|++|+++++ +++.+ + ..+++|++|+++++ .+..++.
T Consensus 60 ~L~~L~Ls~n-~L~~lp~-----~l~~~L~~L~Ls~N-~l~~i--p---~~l~~L~~L~Ls~N-~l~~ip~--------- 117 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPD-----NLPPQITVLEITQN-ALISL--P---ELPASLEYLDACDN-RLSTLPE--------- 117 (571)
T ss_dssp TCSEEECCSS-CCSCCCS-----CCCTTCSEEECCSS-CCSCC--C---CCCTTCCEEECCSS-CCSCCCC---------
T ss_pred CccEEEeCCC-CCCccCH-----hHcCCCCEEECcCC-CCccc--c---cccCCCCEEEccCC-CCCCcch---------
Confidence 7888888885 4665422 12478888888886 45554 2 45788888888886 4444441
Q ss_pred ceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeece
Q 021510 89 EKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVD 168 (311)
Q Consensus 89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 168 (311)
...+|++|+++++ +++.++. .+++|+.|++++|+++
T Consensus 118 ---l~~~L~~L~Ls~N-~l~~lp~----------------------------------------~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 118 ---LPASLKHLDVDNN-QLTMLPE----------------------------------------LPALLEYINADNNQLT 153 (571)
T ss_dssp ---CCTTCCEEECCSS-CCSCCCC----------------------------------------CCTTCCEEECCSSCCS
T ss_pred ---hhcCCCEEECCCC-cCCCCCC----------------------------------------cCccccEEeCCCCccC
Confidence 1127888888876 4443322 1688999999999887
Q ss_pred eeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEe
Q 021510 169 QIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLK 248 (311)
Q Consensus 169 ~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 248 (311)
.+ |. .+++|+.|+++++ .++.+ |. +. ++|+.|++++|. ++.++. ... .-....+.|+.|+
T Consensus 154 ~l------p~---~l~~L~~L~Ls~N-~L~~l-p~--l~--~~L~~L~Ls~N~-L~~lp~---~~~-~L~~~~~~L~~L~ 213 (571)
T 3cvr_A 154 ML------PE---LPTSLEVLSVRNN-QLTFL-PE--LP--ESLEALDVSTNL-LESLPA---VPV-RNHHSEETEIFFR 213 (571)
T ss_dssp CC------CC---CCTTCCEEECCSS-CCSCC-CC--CC--TTCCEEECCSSC-CSSCCC---CC---------CCEEEE
T ss_pred cC------CC---cCCCcCEEECCCC-CCCCc-ch--hh--CCCCEEECcCCC-CCchhh---HHH-hhhcccccceEEe
Confidence 66 33 4678999999986 45555 43 23 789999999986 765532 100 0000122238999
Q ss_pred cccCcccccccCCCcccCCCcccEEEEecCCCcccccccc
Q 021510 249 LQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADL 288 (311)
Q Consensus 249 l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~ 288 (311)
++++ .++.++... ..+++|+.|++.+++--...|..+
T Consensus 214 Ls~N-~l~~lp~~l--~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 214 CREN-RITHIPENI--LSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CCSS-CCCCCCGGG--GGSCTTEEEECCSSSCCHHHHHHH
T ss_pred cCCC-cceecCHHH--hcCCCCCEEEeeCCcCCCcCHHHH
Confidence 9884 677777655 458899999999987655555443
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.03 E-value=1e-09 Score=91.13 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=31.3
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE 221 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 221 (311)
+++|++|++++|+++.+ |..+..+++|+.|+++++ .+..+ +...+..+++|++|++++++
T Consensus 111 l~~L~~L~Ls~N~l~~l------p~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 111 LVHLKELFMCCNKLTEL------PRGIERLTHLTHLALDQN-QLKSI-PHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTCCEEECCSSCCCSC------CTTGGGCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECTTSC
T ss_pred chhhCeEeccCCccccc------CcccccCCCCCEEECCCC-cCCcc-CHHHHhCCCCCCEEEeeCCC
Confidence 45566666666655543 444455555666666553 44434 22334555556666555554
No 104
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.02 E-value=5.8e-12 Score=115.37 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=40.5
Q ss_pred CcccEEEEecCCCCcccc---chHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCccccc---
Q 021510 184 QNLTRLIVWHCHKLKYIF---SASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRC--- 257 (311)
Q Consensus 184 ~~L~~L~i~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~--- 257 (311)
++|++|++++| .++... -...+..+++|++|++++|. +.......-.. .....+++|++|++++| .++.
T Consensus 199 ~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~--~~~~~~~~L~~L~L~~n-~l~~~~~ 273 (461)
T 1z7x_W 199 CQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCP--GLLHPSSRLRTLWIWEC-GITAKGC 273 (461)
T ss_dssp CCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHH--HHTSTTCCCCEEECTTS-CCCHHHH
T ss_pred CCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHH--HHhcCCCCceEEECcCC-CCCHHHH
Confidence 35666666665 222210 01124455666666666664 33221000000 00001566777777765 4444
Q ss_pred --ccCCCcccCCCcccEEEEecCC
Q 021510 258 --LYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 258 --l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
++... ..+++|++|++++|.
T Consensus 274 ~~l~~~l--~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 274 GDLCRVL--RAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHH--HHCTTCCEEECTTCC
T ss_pred HHHHHHH--hhCCCcceEECCCCC
Confidence 22211 236677777777663
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.00 E-value=3.7e-09 Score=87.11 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=45.8
Q ss_pred CCCccEEEeeeeeceeeeccCCCCC-CCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPV-TFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRT 232 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 232 (311)
+++|++|++++|+++.+ |. .+..+++|+.|+++++ .+..+.+ ..+..+++|++|+++++. ++.+...
T Consensus 79 l~~L~~L~Ls~N~l~~l------~~~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~--- 146 (220)
T 2v9t_B 79 LRSLNSLVLYGNKITEL------PKSLFEGLFSLQLLLLNAN-KINCLRV-DAFQDLHNLNLLSLYDNK-LQTIAKG--- 146 (220)
T ss_dssp CSSCCEEECCSSCCCCC------CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTT---
T ss_pred CcCCCEEECCCCcCCcc------CHhHccCCCCCCEEECCCC-CCCEeCH-HHcCCCCCCCEEECCCCc-CCEECHH---
Confidence 56667777777666654 22 2455666777766663 4444422 235566667777766665 5444211
Q ss_pred cCcCCcccCCccCeEecccC
Q 021510 233 DQVIPYFVFPQLTTLKLQDL 252 (311)
Q Consensus 233 ~~~~~~~~~~~L~~L~l~~c 252 (311)
.+..+++|+.|++.+.
T Consensus 147 ----~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 147 ----TFSPLRAIQTMHLAQN 162 (220)
T ss_dssp ----TTTTCTTCCEEECCSS
T ss_pred ----HHhCCCCCCEEEeCCC
Confidence 1112566666666653
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.99 E-value=4.8e-11 Score=106.04 Aligned_cols=94 Identities=10% Similarity=-0.091 Sum_probs=56.1
Q ss_pred CcccEEeecccccccccccc--cccccCCC-CccEEEEcCCCCCcccccchhhhcc-----CcccEEEEccccccceecc
Q 021510 8 PLLQSLILHNLINMERLCID--RLKVESFN-QLKNIEAYNCDKLSNIFWFSTTKCL-----PRLERIAVINCSKMKEIFS 79 (311)
Q Consensus 8 ~~L~~L~L~~~~~l~~l~~~--~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~i~~c~~l~~~~~ 79 (311)
++|++|+++++. ++..... ...+..++ +|++|++++| .+....+ ..+..+ ++|++|++++|. +.....
T Consensus 22 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~ 97 (362)
T 3goz_A 22 HGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNS-DELVQILAAIPANVTSLNLSGNF-LSYKSS 97 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCH-HHHHHHHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred CCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHH-HHHHHHHhccCCCccEEECcCCc-CChHHH
Confidence 459999999975 5553210 03345677 8999999987 5555432 233333 899999999875 332211
Q ss_pred cccccccccceeee-cccceEecCCCCCcccc
Q 021510 80 IGEEVDNAIEKIEF-AQLRSLSLGNLPEVTSF 110 (311)
Q Consensus 80 ~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~l 110 (311)
... ...+..+ ++|++|+++++. ++..
T Consensus 98 ~~l----~~~l~~~~~~L~~L~Ls~N~-l~~~ 124 (362)
T 3goz_A 98 DEL----VKTLAAIPFTITVLDLGWND-FSSK 124 (362)
T ss_dssp HHH----HHHHHTSCTTCCEEECCSSC-GGGS
T ss_pred HHH----HHHHHhCCCCccEEECcCCc-CCcH
Confidence 000 0012233 789999998873 5544
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.98 E-value=7.8e-10 Score=87.04 Aligned_cols=137 Identities=21% Similarity=0.278 Sum_probs=78.0
Q ss_pred cCCCCccEEEEcCCCCCc--ccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccc
Q 021510 32 ESFNQLKNIEAYNCDKLS--NIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTS 109 (311)
Q Consensus 32 ~~l~~L~~L~l~~c~~l~--~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 109 (311)
...++|++|++++|. ++ .+ +..+..+++|++|++++|. +..+. .+..+++|++|+++++. ++.
T Consensus 21 ~~~~~L~~L~l~~n~-l~~~~i--~~~~~~l~~L~~L~l~~n~-l~~~~----------~~~~l~~L~~L~Ls~N~-l~~ 85 (168)
T 2ell_A 21 RTPAAVRELVLDNCK-SNDGKI--EGLTAEFVNLEFLSLINVG-LISVS----------NLPKLPKLKKLELSENR-IFG 85 (168)
T ss_dssp SCTTSCSEEECCSCB-CBTTBC--SSCCGGGGGCCEEEEESSC-CCCCS----------SCCCCSSCCEEEEESCC-CCS
T ss_pred CCcccCCEEECCCCC-CChhhH--HHHHHhCCCCCEEeCcCCC-CCChh----------hhccCCCCCEEECcCCc-Cch
Confidence 345778888887764 43 33 3345667777777777764 33331 34456777777777662 332
Q ss_pred -cccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccE
Q 021510 110 -FCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTR 188 (311)
Q Consensus 110 -l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~ 188 (311)
++. ....+++|+.|++++|+++.+.. +..+..+++|+.
T Consensus 86 ~~~~-------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~----~~~l~~l~~L~~ 124 (168)
T 2ell_A 86 GLDM-------------------------------------LAEKLPNLTHLNLSGNKLKDIST----LEPLKKLECLKS 124 (168)
T ss_dssp CCCH-------------------------------------HHHHCTTCCEEECBSSSCCSSGG----GGGGSSCSCCCE
T ss_pred HHHH-------------------------------------HHhhCCCCCEEeccCCccCcchh----HHHHhcCCCCCE
Confidence 111 01225677777777776655411 133556667777
Q ss_pred EEEecCCCCccccc--hHHHhccCCCcEEEEcccccccee
Q 021510 189 LIVWHCHKLKYIFS--ASMIRSLKQLQRLEICSCEDLQEI 226 (311)
Q Consensus 189 L~i~~c~~l~~~~~--~~~~~~l~~L~~L~l~~c~~l~~~ 226 (311)
|+++++ .+....+ ...+..+++|++|++++|. ++++
T Consensus 125 L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~ 162 (168)
T 2ell_A 125 LDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEA 162 (168)
T ss_dssp EECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBC
T ss_pred EEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhc
Confidence 777775 3333312 1235667777777777775 4444
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.98 E-value=6.2e-10 Score=87.62 Aligned_cols=134 Identities=16% Similarity=0.206 Sum_probs=98.3
Q ss_pred CccCCcccEEeeccccccc--ccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccc
Q 021510 4 CDAFPLLQSLILHNLINME--RLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIG 81 (311)
Q Consensus 4 ~~~l~~L~~L~L~~~~~l~--~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~ 81 (311)
....++|++|+++++. ++ .+ +..++.+++|++|++++|. ++.+ ..+..+++|++|++++|.-...++.
T Consensus 20 ~~~~~~L~~L~l~~n~-l~~~~i---~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~-- 89 (168)
T 2ell_A 20 NRTPAAVRELVLDNCK-SNDGKI---EGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGGLDM-- 89 (168)
T ss_dssp TSCTTSCSEEECCSCB-CBTTBC---SSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSCCCH--
T ss_pred cCCcccCCEEECCCCC-CChhhH---HHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchHHHH--
Confidence 3456899999999975 55 43 3345789999999999975 6665 5677899999999999754332331
Q ss_pred cccccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEE
Q 021510 82 EEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLE 161 (311)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 161 (311)
....+++|++|+++++ .++.++. ...+..+++|+.|+
T Consensus 90 -------~~~~l~~L~~L~Ls~N-~l~~~~~-----------------------------------~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 90 -------LAEKLPNLTHLNLSGN-KLKDIST-----------------------------------LEPLKKLECLKSLD 126 (168)
T ss_dssp -------HHHHCTTCCEEECBSS-SCCSSGG-----------------------------------GGGGSSCSCCCEEE
T ss_pred -------HHhhCCCCCEEeccCC-ccCcchh-----------------------------------HHHHhcCCCCCEEE
Confidence 2335899999999998 5555432 01224479999999
Q ss_pred eeeeeceeeeccCCCCC----CCCCCCcccEEEEecCCC
Q 021510 162 ISEINVDQIWHYNHLPV----TFPRFQNLTRLIVWHCHK 196 (311)
Q Consensus 162 l~~~~l~~i~~~~~~p~----~~~~l~~L~~L~i~~c~~ 196 (311)
+++|.++.+ |. .+..+++|++|++.+|..
T Consensus 127 l~~N~l~~~------~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 127 LFNCEVTNL------NDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CCSSGGGTS------TTHHHHHHTTCSSCCEETTEETTS
T ss_pred eeCCcCcch------HHHHHHHHHhCccCcEecCCCCCh
Confidence 999977765 33 467889999999998743
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.98 E-value=1.2e-09 Score=89.14 Aligned_cols=160 Identities=17% Similarity=0.181 Sum_probs=101.1
Q ss_pred cCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccCCCCCCCCCCccccccccccccccccc
Q 021510 60 LPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEI 139 (311)
Q Consensus 60 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 139 (311)
.++|++|+++++. +..++. ..+..+++|++|+++++ +++.++..
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~--------~~~~~l~~L~~L~l~~n-~l~~~~~~-------------------------- 70 (208)
T 2o6s_A 27 PAQTTYLDLETNS-LKSLPN--------GVFDELTSLTQLYLGGN-KLQSLPNG-------------------------- 70 (208)
T ss_dssp CTTCSEEECCSSC-CCCCCT--------TTTTTCTTCSEEECCSS-CCCCCCTT--------------------------
T ss_pred CCCCcEEEcCCCc-cCcCCh--------hhhcccccCcEEECCCC-ccCccChh--------------------------
Confidence 4678888888863 444432 12346788888888876 45443321
Q ss_pred ccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcc
Q 021510 140 TLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICS 219 (311)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 219 (311)
.+..+++|++|++++|+++.+ .+..+..+++|++|+++++ .+..+ +...+..+++|++|++++
T Consensus 71 ----------~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 71 ----------VFNKLTSLTYLNLSTNQLQSL-----PNGVFDKLTQLKELALNTN-QLQSL-PDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp ----------TTTTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCS
T ss_pred ----------hcCCCCCcCEEECCCCcCCcc-----CHhHhcCccCCCEEEcCCC-cCccc-CHhHhccCCcCCEEECCC
Confidence 112368888899888877765 1233567888888888885 55555 434467788888888888
Q ss_pred ccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccc
Q 021510 220 CEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLS 289 (311)
Q Consensus 220 c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~ 289 (311)
+. ++.+... . +..+++|+.|++++++-. ..++.|++|.+..+.--..+|..+.
T Consensus 134 N~-l~~~~~~-~------~~~l~~L~~L~l~~N~~~---------~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 134 NQ-LKSVPDG-V------FDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp SC-CSCCCTT-T------TTTCTTCCEEECCSCCBC---------CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred Cc-cceeCHH-H------hccCCCccEEEecCCCee---------cCCCCHHHHHHHHHhCCceeeccCc
Confidence 86 6655321 1 122778888888876321 2356677776666554455665443
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.98 E-value=2.3e-09 Score=95.15 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=77.2
Q ss_pred CCccEEEEcCCCCCcccccchhhh-ccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccC
Q 021510 35 NQLKNIEAYNCDKLSNIFWFSTTK-CLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCE 113 (311)
Q Consensus 35 ~~L~~L~l~~c~~l~~~~~~~~~~-~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 113 (311)
+++++|+++++ +++.+. +..+. .+++|++|+++++ .+..++. ..+..+++|++|+++++ +++.++..
T Consensus 39 ~~l~~L~Ls~N-~l~~l~-~~~~~~~l~~L~~L~L~~N-~i~~i~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~ 106 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLR-AEWTPTRLTNLHSLLLSHN-HLNFISS--------EAFVPVPNLRYLDLSSN-HLHTLDEF 106 (361)
T ss_dssp TTCSEEECCSS-CCCEEC-TTSSSSCCTTCCEEECCSS-CCCEECT--------TTTTTCTTCCEEECCSS-CCCEECTT
T ss_pred CCCCEEECCCC-CCCccC-hhhhhhcccccCEEECCCC-cCCccCh--------hhccCCCCCCEEECCCC-cCCcCCHH
Confidence 45777777774 455542 22333 6777777777764 3444432 12345677777777775 34443321
Q ss_pred CCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEec
Q 021510 114 VETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWH 193 (311)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~ 193 (311)
.+..+++|++|++++|+++.+ .|..+..+++|+.|++++
T Consensus 107 ------------------------------------~~~~l~~L~~L~L~~N~i~~~-----~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 107 ------------------------------------LFSDLQALEVLLLYNNHIVVV-----DRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp ------------------------------------TTTTCTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCS
T ss_pred ------------------------------------HhCCCcCCCEEECCCCcccEE-----CHHHhCCcccCCEEECCC
Confidence 112356777777777766665 134456667777777777
Q ss_pred CCCCccccchHHH---hccCCCcEEEEcccccccee
Q 021510 194 CHKLKYIFSASMI---RSLKQLQRLEICSCEDLQEI 226 (311)
Q Consensus 194 c~~l~~~~~~~~~---~~l~~L~~L~l~~c~~l~~~ 226 (311)
+ .+..+ +...+ ..+++|+.|+++++. ++.+
T Consensus 146 N-~l~~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~l 178 (361)
T 2xot_A 146 N-QISRF-PVELIKDGNKLPKLMLLDLSSNK-LKKL 178 (361)
T ss_dssp S-CCCSC-CGGGTC----CTTCCEEECCSSC-CCCC
T ss_pred C-cCCee-CHHHhcCcccCCcCCEEECCCCC-CCcc
Confidence 4 44444 33323 456777777777765 5544
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.96 E-value=3.5e-09 Score=87.23 Aligned_cols=150 Identities=16% Similarity=0.167 Sum_probs=100.8
Q ss_pred cEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccce
Q 021510 11 QSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEK 90 (311)
Q Consensus 11 ~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 90 (311)
+.++..+. +++.++. .-.++|++|+++++ .++.+. +..+..+++|++|+++++. +..+.. ..+
T Consensus 14 ~~v~c~~~-~l~~iP~-----~l~~~l~~L~l~~n-~i~~i~-~~~~~~l~~L~~L~Ls~N~-i~~~~~--------~~~ 76 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPT-----NLPETITEIRLEQN-TIKVIP-PGAFSPYKKLRRIDLSNNQ-ISELAP--------DAF 76 (220)
T ss_dssp TEEECTTS-CCSSCCS-----SCCTTCCEEECCSS-CCCEEC-TTSSTTCTTCCEEECCSSC-CCEECT--------TTT
T ss_pred CEEEcCCC-CcCcCCC-----ccCcCCCEEECCCC-cCCCcC-HhHhhCCCCCCEEECCCCc-CCCcCH--------HHh
Confidence 34555552 3555422 22368999999885 555542 3456778899999998863 444431 234
Q ss_pred eeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceee
Q 021510 91 IEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQI 170 (311)
Q Consensus 91 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i 170 (311)
..+++|++|+++++ .++.++... +..+++|++|++++|+++.+
T Consensus 77 ~~l~~L~~L~Ls~N-~l~~l~~~~------------------------------------f~~l~~L~~L~L~~N~l~~~ 119 (220)
T 2v9t_B 77 QGLRSLNSLVLYGN-KITELPKSL------------------------------------FEGLFSLQLLLLNANKINCL 119 (220)
T ss_dssp TTCSSCCEEECCSS-CCCCCCTTT------------------------------------TTTCTTCCEEECCSSCCCCC
T ss_pred hCCcCCCEEECCCC-cCCccCHhH------------------------------------ccCCCCCCEEECCCCCCCEe
Confidence 56788999999886 455444311 12368899999999987766
Q ss_pred eccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510 171 WHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE 221 (311)
Q Consensus 171 ~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 221 (311)
.|..+..+++|+.|+++++ .++.+ +...+..+++|++|++++++
T Consensus 120 -----~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 120 -----RVDAFQDLHNLNLLSLYDN-KLQTI-AKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp -----CTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred -----CHHHcCCCCCCCEEECCCC-cCCEE-CHHHHhCCCCCCEEEeCCCC
Confidence 2345778889999999985 55655 33446778899999998876
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.95 E-value=3.9e-09 Score=98.99 Aligned_cols=160 Identities=20% Similarity=0.184 Sum_probs=105.0
Q ss_pred CccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccc
Q 021510 4 CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEE 83 (311)
Q Consensus 4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 83 (311)
...+++|++|+++++ +++.+ + +.+++|++|+++++ .++.+ +. +.. +|++|+++++ .+..++
T Consensus 76 ~~l~~~L~~L~Ls~N-~l~~i----p--~~l~~L~~L~Ls~N-~l~~i--p~-l~~--~L~~L~Ls~N-~l~~lp----- 136 (571)
T 3cvr_A 76 DNLPPQITVLEITQN-ALISL----P--ELPASLEYLDACDN-RLSTL--PE-LPA--SLKHLDVDNN-QLTMLP----- 136 (571)
T ss_dssp SCCCTTCSEEECCSS-CCSCC----C--CCCTTCCEEECCSS-CCSCC--CC-CCT--TCCEEECCSS-CCSCCC-----
T ss_pred HhHcCCCCEEECcCC-CCccc----c--cccCCCCEEEccCC-CCCCc--ch-hhc--CCCEEECCCC-cCCCCC-----
Confidence 334688999999996 46654 2 56899999999997 56665 23 333 9999999996 455554
Q ss_pred cccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEee
Q 021510 84 VDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEIS 163 (311)
Q Consensus 84 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (311)
. .+++|+.|+++++ .++.++. .+++|++|+++
T Consensus 137 -----~--~l~~L~~L~Ls~N-~l~~lp~----------------------------------------~l~~L~~L~Ls 168 (571)
T 3cvr_A 137 -----E--LPALLEYINADNN-QLTMLPE----------------------------------------LPTSLEVLSVR 168 (571)
T ss_dssp -----C--CCTTCCEEECCSS-CCSCCCC----------------------------------------CCTTCCEEECC
T ss_pred -----C--cCccccEEeCCCC-ccCcCCC----------------------------------------cCCCcCEEECC
Confidence 1 5789999999987 4554332 14677888888
Q ss_pred eeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCC-------cEEEEccccccceecccccccCcC
Q 021510 164 EINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQL-------QRLEICSCEDLQEIISENRTDQVI 236 (311)
Q Consensus 164 ~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L-------~~L~l~~c~~l~~~~~~~~~~~~~ 236 (311)
+|+++.+ |. +. ++|+.|+++++ .++.+ |. +.. +| ++|++++|. ++.++. ....
T Consensus 169 ~N~L~~l------p~-l~--~~L~~L~Ls~N-~L~~l-p~--~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~--~l~~-- 228 (571)
T 3cvr_A 169 NNQLTFL------PE-LP--ESLEALDVSTN-LLESL-PA--VPV--RNHHSEETEIFFRCRENR-ITHIPE--NILS-- 228 (571)
T ss_dssp SSCCSCC------CC-CC--TTCCEEECCSS-CCSSC-CC--CC----------CCEEEECCSSC-CCCCCG--GGGG--
T ss_pred CCCCCCc------ch-hh--CCCCEEECcCC-CCCch-hh--HHH--hhhcccccceEEecCCCc-ceecCH--HHhc--
Confidence 8776665 33 33 67888888774 45544 32 111 45 778887775 665532 1111
Q ss_pred CcccCCccCeEecccCcc
Q 021510 237 PYFVFPQLTTLKLQDLPK 254 (311)
Q Consensus 237 ~~~~~~~L~~L~l~~c~~ 254 (311)
+++|+.|++++++-
T Consensus 229 ----l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 229 ----LDPTCTIILEDNPL 242 (571)
T ss_dssp ----SCTTEEEECCSSSC
T ss_pred ----CCCCCEEEeeCCcC
Confidence 77778888777543
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.95 E-value=5.4e-09 Score=86.65 Aligned_cols=150 Identities=16% Similarity=0.189 Sum_probs=85.5
Q ss_pred ccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccCCCC
Q 021510 37 LKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVET 116 (311)
Q Consensus 37 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 116 (311)
-+.++.++ ..+..+ |. +-.++|++|+++++. +..+.. ..+..+++|++|+++++ .++.++..
T Consensus 21 ~~~v~c~~-~~l~~i--p~--~~~~~L~~L~Ls~n~-i~~~~~--------~~~~~l~~L~~L~L~~N-~l~~i~~~--- 82 (229)
T 3e6j_A 21 GTTVDCRS-KRHASV--PA--GIPTNAQILYLHDNQ-ITKLEP--------GVFDSLINLKELYLGSN-QLGALPVG--- 82 (229)
T ss_dssp TTEEECTT-SCCSSC--CS--CCCTTCSEEECCSSC-CCCCCT--------TTTTTCTTCCEEECCSS-CCCCCCTT---
T ss_pred CCEeEccC-CCcCcc--CC--CCCCCCCEEEcCCCc-cCccCH--------HHhhCccCCcEEECCCC-CCCCcChh---
Confidence 34566554 344444 22 123678888887753 333321 12345677777777776 34433321
Q ss_pred CCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCC
Q 021510 117 PSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHK 196 (311)
Q Consensus 117 ~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~ 196 (311)
.+..+++|+.|++++|+++.+. +..+..+++|+.|+++++ .
T Consensus 83 ---------------------------------~~~~l~~L~~L~Ls~N~l~~l~-----~~~~~~l~~L~~L~Ls~N-~ 123 (229)
T 3e6j_A 83 ---------------------------------VFDSLTQLTVLDLGTNQLTVLP-----SAVFDRLVHLKELFMCCN-K 123 (229)
T ss_dssp ---------------------------------TTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSS-C
T ss_pred ---------------------------------hcccCCCcCEEECCCCcCCccC-----hhHhCcchhhCeEeccCC-c
Confidence 1123677788888877776551 223566777788877774 4
Q ss_pred CccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCc
Q 021510 197 LKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLP 253 (311)
Q Consensus 197 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 253 (311)
+..+ |.. +..+++|++|+++++. ++.+.. .. +..+++|+.|++.+.+
T Consensus 124 l~~l-p~~-~~~l~~L~~L~L~~N~-l~~~~~-~~------~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 124 LTEL-PRG-IERLTHLTHLALDQNQ-LKSIPH-GA------FDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCSC-CTT-GGGCTTCSEEECCSSC-CCCCCT-TT------TTTCTTCCEEECTTSC
T ss_pred cccc-Ccc-cccCCCCCEEECCCCc-CCccCH-HH------HhCCCCCCEEEeeCCC
Confidence 5544 444 4667777888877775 655432 11 1126777777776643
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.93 E-value=3.1e-09 Score=94.34 Aligned_cols=163 Identities=15% Similarity=0.052 Sum_probs=113.0
Q ss_pred CccCCcccEEeeccccccccccccccccc-CCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccc
Q 021510 4 CDAFPLLQSLILHNLINMERLCIDRLKVE-SFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGE 82 (311)
Q Consensus 4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 82 (311)
....+.+++|+|++. +++++.. ..+. .+++|++|+++++ +++.+. +..+..+++|++|+++++. +..++.
T Consensus 35 ~~~~~~l~~L~Ls~N-~l~~l~~--~~~~~~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~--- 105 (361)
T 2xot_A 35 QSLPSYTALLDLSHN-NLSRLRA--EWTPTRLTNLHSLLLSHN-HLNFIS-SEAFVPVPNLRYLDLSSNH-LHTLDE--- 105 (361)
T ss_dssp SSCCTTCSEEECCSS-CCCEECT--TSSSSCCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSC-CCEECT---
T ss_pred ccCCCCCCEEECCCC-CCCccCh--hhhhhcccccCEEECCCC-cCCccC-hhhccCCCCCCEEECCCCc-CCcCCH---
Confidence 344567999999995 5777532 2234 7899999999986 566652 3467889999999999964 665542
Q ss_pred ccccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEe
Q 021510 83 EVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEI 162 (311)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 162 (311)
..+..+++|++|+++++ .++.+... .+..+++|+.|++
T Consensus 106 -----~~~~~l~~L~~L~L~~N-~i~~~~~~------------------------------------~~~~l~~L~~L~L 143 (361)
T 2xot_A 106 -----FLFSDLQALEVLLLYNN-HIVVVDRN------------------------------------AFEDMAQLQKLYL 143 (361)
T ss_dssp -----TTTTTCTTCCEEECCSS-CCCEECTT------------------------------------TTTTCTTCCEEEC
T ss_pred -----HHhCCCcCCCEEECCCC-cccEECHH------------------------------------HhCCcccCCEEEC
Confidence 23456899999999987 45544321 1234799999999
Q ss_pred eeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCC--CcEEEEcccc
Q 021510 163 SEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQ--LQRLEICSCE 221 (311)
Q Consensus 163 ~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~--L~~L~l~~c~ 221 (311)
++|+++.+..... ..+..+++|+.|+++++ .++.+ +...+..++. ++.|++.+++
T Consensus 144 ~~N~l~~l~~~~~--~~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 144 SQNQISRFPVELI--KDGNKLPKLMLLDLSSN-KLKKL-PLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CSSCCCSCCGGGT--C----CTTCCEEECCSS-CCCCC-CHHHHHHSCHHHHTTEECCSSC
T ss_pred CCCcCCeeCHHHh--cCcccCCcCCEEECCCC-CCCcc-CHHHhhhccHhhcceEEecCCC
Confidence 9998887621110 11156889999999994 67766 5555777776 4889999865
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.92 E-value=1.7e-08 Score=83.11 Aligned_cols=109 Identities=17% Similarity=0.300 Sum_probs=47.0
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD 233 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 233 (311)
+++|++|++++|+++.+. +..+..+++|++|+++++ .++.+ +...+..+++|++|+++++. ++.+... .
T Consensus 56 l~~L~~L~L~~N~i~~i~-----~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~-- 124 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIE-----EGAFEGASGVNEILLTSN-RLENV-QHKMFKGLESLKTLMLRSNR-ITCVGND-S-- 124 (220)
T ss_dssp CTTCCEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSS-CCCCC-CGGGGTTCSSCCEEECTTSC-CCCBCTT-S--
T ss_pred CCCCCEEECCCCcCCEEC-----HHHhCCCCCCCEEECCCC-ccCcc-CHhHhcCCcCCCEEECCCCc-CCeECHh-H--
Confidence 445555555555444441 123444555555555553 33333 22224445555555555554 3333210 1
Q ss_pred CcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 234 QVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 234 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
+..+++|+.|+++++ +++.+..... ..+++|++|++.+++
T Consensus 125 ----~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 125 ----FIGLSSVRLLSLYDN-QITTVAPGAF-DTLHSLSTLNLLANP 164 (220)
T ss_dssp ----STTCTTCSEEECTTS-CCCCBCTTTT-TTCTTCCEEECCSCC
T ss_pred ----cCCCccCCEEECCCC-cCCEECHHHh-cCCCCCCEEEecCcC
Confidence 111455555555542 3333322111 234555555555543
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.90 E-value=2.9e-11 Score=113.62 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=28.4
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE 221 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 221 (311)
+++|+.|++++|+++.+ |..++.+++|+.|+++++ .++.+ | .+..+++|++|++++|.
T Consensus 462 l~~L~~L~Ls~N~l~~l------p~~~~~l~~L~~L~Ls~N-~l~~l-p--~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 462 LLLVTHLDLSHNRLRAL------PPALAALRCLEVLQASDN-ALENV-D--GVANLPRLQELLLCNNR 519 (567)
T ss_dssp GTTCCEEECCSSCCCCC------CGGGGGCTTCCEEECCSS-CCCCC-G--GGTTCSSCCEEECCSSC
T ss_pred cccCcEeecCccccccc------chhhhcCCCCCEEECCCC-CCCCC-c--ccCCCCCCcEEECCCCC
Confidence 45555555555544433 334445555555555553 33333 3 24455555555555554
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.87 E-value=6.9e-10 Score=85.51 Aligned_cols=61 Identities=21% Similarity=0.375 Sum_probs=37.7
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccc--hHHHhccCCCcEEEEcc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFS--ASMIRSLKQLQRLEICS 219 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~--~~~~~~l~~L~~L~l~~ 219 (311)
+++|++|++++|.++.+.. +..+..+++|++|+++++ .+....+ ...+..+++|++|++++
T Consensus 87 l~~L~~L~ls~N~i~~~~~----~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLST----IEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCCEEECTTSCCCSHHH----HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCCEEECCCCcCCChHH----HHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 5667777777776554311 133556677888888775 4444422 13467788888887653
No 118
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.86 E-value=6.8e-11 Score=108.23 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=39.9
Q ss_pred ccCCcccEEeeccccccccccccc---ccccCCCCccEEEEcCCCCCccccc---chhhhccCcccEEEEcccc
Q 021510 5 DAFPLLQSLILHNLINMERLCIDR---LKVESFNQLKNIEAYNCDKLSNIFW---FSTTKCLPRLERIAVINCS 72 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~l~~~~---~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~i~~c~ 72 (311)
..+++|++|+++++. +....... .-....++|++|++++| .++.... +..+..+++|++|+++++.
T Consensus 110 ~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 110 RTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp TSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred ccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 456889999999865 44311000 00123467888888887 3443211 3445567888888888765
No 119
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.85 E-value=1.1e-09 Score=98.07 Aligned_cols=226 Identities=14% Similarity=0.054 Sum_probs=123.8
Q ss_pred ccCCcccEEeecccc--cccc-cccc----cccccCCCCccEEEEcCCCCCcccc---cchhhhccCcccEEEEcccccc
Q 021510 5 DAFPLLQSLILHNLI--NMER-LCID----RLKVESFNQLKNIEAYNCDKLSNIF---WFSTTKCLPRLERIAVINCSKM 74 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~--~l~~-l~~~----~~~~~~l~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~i~~c~~l 74 (311)
..+++|++|+++++. .+.. ++.+ ...+..+++|++|+++++. +.... .+..+..+++|++|++++|..
T Consensus 57 ~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l- 134 (386)
T 2ca6_A 57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGL- 134 (386)
T ss_dssp TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCC-
T ss_pred HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCC-
Confidence 357899999999873 2221 1000 1123678999999999974 44411 145667899999999999853
Q ss_pred ceecccccccccccceeee---------cccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccc--c
Q 021510 75 KEIFSIGEEVDNAIEKIEF---------AQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLD--I 143 (311)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l---------~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~--~ 143 (311)
........ ...+..+ ++|++|+++++. ++.......... ......+..+.+.. +.+. .
T Consensus 135 ~~~~~~~l----~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~---l~~~~~L~~L~L~~---n~l~~~g 203 (386)
T 2ca6_A 135 GPQAGAKI----ARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKT---FQSHRLLHTVKMVQ---NGIRPEG 203 (386)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHH---HHHCTTCCEEECCS---SCCCHHH
T ss_pred CHHHHHHH----HHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHH---HHhCCCcCEEECcC---CCCCHhH
Confidence 21110000 0011223 789999998873 431111000000 00000111122221 1111 0
Q ss_pred cccccc-ccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccch---HHH--hccCCCcEEEE
Q 021510 144 STLLFN-EKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSA---SMI--RSLKQLQRLEI 217 (311)
Q Consensus 144 ~~~~~~-~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~---~~~--~~l~~L~~L~l 217 (311)
...+.. .+..+++|+.|++++|.++..... .+|..+..+++|++|++++|. +...... ..+ ..+++|++|++
T Consensus 204 ~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~-~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L 281 (386)
T 2ca6_A 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSS-ALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRL 281 (386)
T ss_dssp HHHHHHTTGGGCTTCCEEECCSSCCHHHHHH-HHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred HHHHHHHHhhcCCCccEEECcCCCCCcHHHH-HHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEEC
Confidence 001112 345689999999999976321000 013446678899999999975 4433111 123 23899999999
Q ss_pred ccccccce-----ecccccccCcCCcccCCccCeEecccCc
Q 021510 218 CSCEDLQE-----IISENRTDQVIPYFVFPQLTTLKLQDLP 253 (311)
Q Consensus 218 ~~c~~l~~-----~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 253 (311)
++|. +.. ++. .. ...+++|+.|++++|+
T Consensus 282 ~~n~-i~~~g~~~l~~--~l-----~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 282 QYNE-IELDAVRTLKT--VI-----DEKMPDLLFLELNGNR 314 (386)
T ss_dssp CSSC-CBHHHHHHHHH--HH-----HHHCTTCCEEECTTSB
T ss_pred cCCc-CCHHHHHHHHH--HH-----HhcCCCceEEEccCCc
Confidence 9997 655 221 11 0117999999999864
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=4.7e-08 Score=85.47 Aligned_cols=103 Identities=21% Similarity=0.241 Sum_probs=71.1
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCc-EEEEccccccceecccccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQ-RLEICSCEDLQEIISENRT 232 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~ 232 (311)
+++|+++++.+++++.+. +..+..+++|+.+++.+. ++.+ +...+..+++|+ ++.+.+ .++.+..
T Consensus 225 ~~~L~~l~L~~n~i~~I~-----~~aF~~~~~L~~l~l~~n--i~~I-~~~aF~~~~~L~~~l~l~~--~l~~I~~---- 290 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIP-----DFTFAQKKYLLKIKLPHN--LKTI-GQRVFSNCGRLAGTLELPA--SVTAIEF---- 290 (329)
T ss_dssp CTTCCEEECTTBCCCEEC-----TTTTTTCTTCCEEECCTT--CCEE-CTTTTTTCTTCCEEEEECT--TCCEECT----
T ss_pred cCCCeEEECCCCCcceec-----HhhhhCCCCCCEEECCcc--ccee-hHHHhhCChhccEEEEEcc--cceEEch----
Confidence 678888888888888872 234678888888888773 6666 445578888888 888887 3666632
Q ss_pred cCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEE
Q 021510 233 DQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLV 275 (311)
Q Consensus 233 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i 275 (311)
.++..+++|+.+.+.+ ..++.++...+ ..+++|+.++.
T Consensus 291 ---~aF~~c~~L~~l~l~~-n~i~~I~~~aF-~~~~~L~~ly~ 328 (329)
T 3sb4_A 291 ---GAFMGCDNLRYVLATG-DKITTLGDELF-GNGVPSKLIYK 328 (329)
T ss_dssp ---TTTTTCTTEEEEEECS-SCCCEECTTTT-CTTCCCCEEEC
T ss_pred ---hhhhCCccCCEEEeCC-CccCccchhhh-cCCcchhhhcc
Confidence 1222378888888755 56777766542 36777777754
No 121
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.82 E-value=2.3e-10 Score=101.60 Aligned_cols=223 Identities=14% Similarity=0.018 Sum_probs=120.9
Q ss_pred cCC-cccEEeecccccccccccccccccC-----CCCccEEEEcCCCCCcccccch---hhhcc-CcccEEEEccccccc
Q 021510 6 AFP-LLQSLILHNLINMERLCIDRLKVES-----FNQLKNIEAYNCDKLSNIFWFS---TTKCL-PRLERIAVINCSKMK 75 (311)
Q Consensus 6 ~l~-~L~~L~L~~~~~l~~l~~~~~~~~~-----l~~L~~L~l~~c~~l~~~~~~~---~~~~l-~~L~~L~i~~c~~l~ 75 (311)
.++ +|++|+++++. +.... +..+.. +++|++|++++|. ++...+.. .+..+ ++|++|++++|. +.
T Consensus 48 ~~~~~L~~L~Ls~N~-l~~~~--~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~ 122 (362)
T 3goz_A 48 NTPASVTSLNLSGNS-LGFKN--SDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FS 122 (362)
T ss_dssp TCCTTCCEEECCSSC-GGGSC--HHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GG
T ss_pred hCCCceeEEECcCCC-CCHHH--HHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CC
Confidence 356 89999999974 55521 122233 3899999999975 55442211 23344 899999999975 33
Q ss_pred eecccccccccccceee-ecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccC
Q 021510 76 EIFSIGEEVDNAIEKIE-FAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVAL 154 (311)
Q Consensus 76 ~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l 154 (311)
....... ...+.. .++|++|+++++ .+++..... +...+...
T Consensus 123 ~~~~~~l----~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~--------------------------------l~~~l~~~ 165 (362)
T 3goz_A 123 SKSSSEF----KQAFSNLPASITSLNLRGN-DLGIKSSDE--------------------------------LIQILAAI 165 (362)
T ss_dssp GSCHHHH----HHHHTTSCTTCCEEECTTS-CGGGSCHHH--------------------------------HHHHHHTS
T ss_pred cHHHHHH----HHHHHhCCCceeEEEccCC-cCCHHHHHH--------------------------------HHHHHhcC
Confidence 3221000 001112 258999999987 454321100 00111223
Q ss_pred C-CccEEEeeeeeceeeeccCCCCCCCCCC-CcccEEEEecCCCCcccc----chHHHhc-cCCCcEEEEccccccceec
Q 021510 155 P-NLEVLEISEINVDQIWHYNHLPVTFPRF-QNLTRLIVWHCHKLKYIF----SASMIRS-LKQLQRLEICSCEDLQEII 227 (311)
Q Consensus 155 ~-~L~~L~l~~~~l~~i~~~~~~p~~~~~l-~~L~~L~i~~c~~l~~~~----~~~~~~~-l~~L~~L~l~~c~~l~~~~ 227 (311)
+ +|++|++++|+++....... ...+..+ ++|+.|+++++ .+.... +.. +.. .++|++|++++|. +....
T Consensus 166 ~~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~-l~~~~ 241 (362)
T 3goz_A 166 PANVNSLNLRGNNLASKNCAEL-AKFLASIPASVTSLDLSAN-LLGLKSYAELAYI-FSSIPNHVVSLNLCLNC-LHGPS 241 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHH-HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHH-HHHSCTTCCEEECCSSC-CCCCC
T ss_pred CccccEeeecCCCCchhhHHHH-HHHHHhCCCCCCEEECCCC-CCChhHHHHHHHH-HhcCCCCceEEECcCCC-CCcHH
Confidence 3 78888888886654311000 0112233 47888888885 344421 222 233 4578888888886 54432
Q ss_pred ccccccCcCCcccCCccCeEecccCc-------ccccccCCCcccCCCcccEEEEecCC
Q 021510 228 SENRTDQVIPYFVFPQLTTLKLQDLP-------KLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 228 ~~~~~~~~~~~~~~~~L~~L~l~~c~-------~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
...- ......+++|+.|++++|. .+..+.... ..+++|++|++++++
T Consensus 242 ~~~l---~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~--~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 242 LENL---KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF--PNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHH---HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS--TTCCEEEEECTTSCB
T ss_pred HHHH---HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh--ccCCceEEEecCCCc
Confidence 1000 0011126778888888764 122232222 356777778777765
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.80 E-value=6.9e-09 Score=79.81 Aligned_cols=106 Identities=16% Similarity=0.235 Sum_probs=56.2
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD 233 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 233 (311)
+++|++|++++|+++.+ ..+..+++|++|+++++ .+....+. .+..+++|++|++++|. ++.+......
T Consensus 41 l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~ls~N~-i~~~~~~~~~- 109 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI-------ANLPKLNKLKKLELSDN-RVSGGLEV-LAEKCPNLTHLNLSGNK-IKDLSTIEPL- 109 (149)
T ss_dssp CTTCCEEECTTSCCCCC-------TTCCCCTTCCEEECCSS-CCCSCTHH-HHHHCTTCCEEECTTSC-CCSHHHHGGG-
T ss_pred cCCCcEEECcCCCCCCc-------hhhhcCCCCCEEECCCC-cccchHHH-HhhhCCCCCEEECCCCc-CCChHHHHHH-
Confidence 56666666666655544 23445666777777664 33332132 24556777777777765 5543211111
Q ss_pred CcCCcccCCccCeEecccCcccccccCC--CcccCCCcccEEEEe
Q 021510 234 QVIPYFVFPQLTTLKLQDLPKLRCLYPG--MHSSEWPALEILLVY 276 (311)
Q Consensus 234 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~--~~~~~~~~L~~L~i~ 276 (311)
..+++|++|+++++ .++.++.. .....+++|++|+++
T Consensus 110 -----~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 110 -----KKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -----GGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred -----hhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 12667777777765 34444330 011345666666554
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.77 E-value=1.1e-08 Score=81.02 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=56.4
Q ss_pred CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510 155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ 234 (311)
Q Consensus 155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 234 (311)
++|+.|++++|.++.+ ..+..+++|+.|+++++ .+..+ +...+..+++|++|++++|. +..+...+.
T Consensus 42 ~~L~~L~Ls~N~l~~~-------~~l~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~--- 108 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL-------DGFPLLRRLKTLLVNNN-RICRI-GEGLDQALPDLTELILTNNS-LVELGDLDP--- 108 (176)
T ss_dssp TCCSEEECCSSCCCEE-------CCCCCCSSCCEEECCSS-CCCEE-CSCHHHHCTTCCEEECCSCC-CCCGGGGGG---
T ss_pred CCCCEEECCCCCCCcc-------cccccCCCCCEEECCCC-ccccc-CcchhhcCCCCCEEECCCCc-CCcchhhHh---
Confidence 3666666666655554 23445566666666664 34444 33334556666666666665 444321111
Q ss_pred cCCcccCCccCeEecccCcccccccCC--CcccCCCcccEEEEecCCC
Q 021510 235 VIPYFVFPQLTTLKLQDLPKLRCLYPG--MHSSEWPALEILLVYGCDK 280 (311)
Q Consensus 235 ~~~~~~~~~L~~L~l~~c~~L~~l~~~--~~~~~~~~L~~L~i~~c~~ 280 (311)
+..+++|+.|++++++ +..++.. .....+++|+.|++.++..
T Consensus 109 ---l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 109 ---LASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ---GGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ---hhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 1126666666666643 3333321 0013466666666666553
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.76 E-value=9.4e-09 Score=81.50 Aligned_cols=134 Identities=13% Similarity=0.153 Sum_probs=68.2
Q ss_pred ccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCcccc
Q 021510 31 VESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSF 110 (311)
Q Consensus 31 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 110 (311)
+....+|++|+++++ .++.+ +......++|++|+++++. +..+. .+..+++|++|+++++ .++.+
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i--~~~~~~~~~L~~L~Ls~N~-l~~~~----------~l~~l~~L~~L~Ls~N-~l~~~ 79 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVI--ENLGATLDQFDAIDFSDNE-IRKLD----------GFPLLRRLKTLLVNNN-RICRI 79 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSC--CCGGGGTTCCSEEECCSSC-CCEEC----------CCCCCSSCCEEECCSS-CCCEE
T ss_pred cCCcCCceEEEeeCC-CCchh--HHhhhcCCCCCEEECCCCC-CCccc----------ccccCCCCCEEECCCC-ccccc
Confidence 345677777777775 44444 2222233477777777753 33331 2345566666666665 34333
Q ss_pred ccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEE
Q 021510 111 CCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLI 190 (311)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~ 190 (311)
+.. .+..+++|++|++++|.+..+.. ...+..+++|+.|+
T Consensus 80 ~~~------------------------------------~~~~l~~L~~L~L~~N~i~~~~~----~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 80 GEG------------------------------------LDQALPDLTELILTNNSLVELGD----LDPLASLKSLTYLC 119 (176)
T ss_dssp CSC------------------------------------HHHHCTTCCEEECCSCCCCCGGG----GGGGGGCTTCCEEE
T ss_pred Ccc------------------------------------hhhcCCCCCEEECCCCcCCcchh----hHhhhcCCCCCEEE
Confidence 211 00225666666666665544311 01344555666666
Q ss_pred EecCCCCccccchH---HHhccCCCcEEEEcccc
Q 021510 191 VWHCHKLKYIFSAS---MIRSLKQLQRLEICSCE 221 (311)
Q Consensus 191 i~~c~~l~~~~~~~---~~~~l~~L~~L~l~~c~ 221 (311)
+++++ +... +.. .+..+++|+.|+++++.
T Consensus 120 l~~N~-i~~~-~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 120 ILRNP-VTNK-KHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSSG-GGGS-TTHHHHHHHHCTTCSEETTEECC
T ss_pred ecCCC-CCCc-HhHHHHHHHHCCccceeCCCcCC
Confidence 66642 2322 221 24556666666666654
No 125
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.64 E-value=1.5e-08 Score=79.79 Aligned_cols=90 Identities=17% Similarity=0.245 Sum_probs=68.8
Q ss_pred cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhc----cCcccEEEEccccccceeccccccc
Q 021510 9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKC----LPRLERIAVINCSKMKEIFSIGEEV 84 (311)
Q Consensus 9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~----l~~L~~L~i~~c~~l~~~~~~~~~~ 84 (311)
.|++|++++|. ++. .+...+..+++|++|++++|..+++... ..+.. +++|++|++++|+.+..--.
T Consensus 62 ~L~~LDLs~~~-Itd--~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl----- 132 (176)
T 3e4g_A 62 KIQAIDATDSC-IMS--IGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGI----- 132 (176)
T ss_dssp CEEEEEEESCC-CCG--GGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHH-----
T ss_pred eEeEEeCcCCC-ccH--HHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHH-----
Confidence 59999999987 666 3345567899999999999999988532 22333 35899999999998765211
Q ss_pred ccccceeeecccceEecCCCCCcccc
Q 021510 85 DNAIEKIEFAQLRSLSLGNLPEVTSF 110 (311)
Q Consensus 85 ~~~~~~~~l~~L~~L~l~~~~~l~~l 110 (311)
..+..+++|++|++++|+.+++.
T Consensus 133 ---~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 ---IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp ---HHGGGCTTCCEEEEESCTTCCCH
T ss_pred ---HHHhcCCCCCEEECCCCCCCCch
Confidence 12456899999999999999874
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.63 E-value=5.1e-10 Score=105.17 Aligned_cols=107 Identities=19% Similarity=0.278 Sum_probs=83.3
Q ss_pred CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510 155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ 234 (311)
Q Consensus 155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 234 (311)
..|+.|++++|+++.+ |. ++.+++|+.|+++++ .++.+ |.. +..+++|+.|+++++. ++.++ ....
T Consensus 441 ~~L~~L~Ls~n~l~~l------p~-~~~l~~L~~L~Ls~N-~l~~l-p~~-~~~l~~L~~L~Ls~N~-l~~lp---~l~~ 506 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVL------CH-LEQLLLVTHLDLSHN-RLRAL-PPA-LAALRCLEVLQASDNA-LENVD---GVAN 506 (567)
T ss_dssp TTCSEEECTTSCCSSC------CC-GGGGTTCCEEECCSS-CCCCC-CGG-GGGCTTCCEEECCSSC-CCCCG---GGTT
T ss_pred cCceEEEecCCCCCCC------cC-ccccccCcEeecCcc-ccccc-chh-hhcCCCCCEEECCCCC-CCCCc---ccCC
Confidence 4689999999988876 44 788999999999995 56656 654 7899999999999997 77653 2222
Q ss_pred cCCcccCCccCeEecccCcccccc--cCCCcccCCCcccEEEEecCCCccccc
Q 021510 235 VIPYFVFPQLTTLKLQDLPKLRCL--YPGMHSSEWPALEILLVYGCDKLKIFA 285 (311)
Q Consensus 235 ~~~~~~~~~L~~L~l~~c~~L~~l--~~~~~~~~~~~L~~L~i~~c~~l~~lp 285 (311)
+++|+.|+++++ +++.+ +... ..+++|+.|++++++ +..+|
T Consensus 507 ------l~~L~~L~Ls~N-~l~~~~~p~~l--~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 507 ------LPRLQELLLCNN-RLQQSAAIQPL--VSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp ------CSSCCEEECCSS-CCCSSSTTGGG--GGCTTCCEEECTTSG-GGGSS
T ss_pred ------CCCCcEEECCCC-CCCCCCCcHHH--hcCCCCCEEEecCCc-CCCCc
Confidence 899999999985 66666 3333 578999999999875 44444
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.62 E-value=1.9e-07 Score=75.03 Aligned_cols=78 Identities=12% Similarity=0.054 Sum_probs=40.2
Q ss_pred cEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccce
Q 021510 11 QSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEK 90 (311)
Q Consensus 11 ~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 90 (311)
+++++++. ++++++. .-..+|++|+++++ +++.+.+...+..+++|++|+++++. +..+.+ ..+
T Consensus 11 ~~l~~s~~-~l~~ip~-----~~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--------~~~ 74 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPR-----DIPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEP--------NAF 74 (192)
T ss_dssp TEEECTTS-CCSSCCS-----CCCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCT--------TTT
T ss_pred CEEEcCCC-CcCcCcc-----CCCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCH--------hHc
Confidence 45666663 3444421 12236777777764 45544222235666777777776642 333321 123
Q ss_pred eeecccceEecCCC
Q 021510 91 IEFAQLRSLSLGNL 104 (311)
Q Consensus 91 ~~l~~L~~L~l~~~ 104 (311)
..+++|++|+++++
T Consensus 75 ~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 75 EGASHIQELQLGEN 88 (192)
T ss_dssp TTCTTCCEEECCSC
T ss_pred CCcccCCEEECCCC
Confidence 34566666666665
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.60 E-value=1.7e-07 Score=75.47 Aligned_cols=107 Identities=16% Similarity=0.216 Sum_probs=57.4
Q ss_pred CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510 155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ 234 (311)
Q Consensus 155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 234 (311)
++|++|++++|+++.+ |..+..+++|+.|+++++ .++.+ +...+..+++|++|+++++. ++.+...
T Consensus 31 ~~l~~L~L~~n~i~~i------p~~~~~l~~L~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~Ls~N~-l~~i~~~----- 96 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLV------PKELSNYKHLTLIDLSNN-RISTL-SNQSFSNMTQLLTLILSYNR-LRCIPPR----- 96 (193)
T ss_dssp TTCCEEECCSSCCCSC------CGGGGGCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTT-----
T ss_pred CCCCEEECCCCcCchh------HHHhhcccCCCEEECCCC-cCCEe-CHhHccCCCCCCEEECCCCc-cCEeCHH-----
Confidence 4566666666655544 334556666666666663 44444 22235566666666666665 5544321
Q ss_pred cCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 235 VIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 235 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
.+..+++|+.|++++ ..++.++.+.. ..+++|+.|++.++|
T Consensus 97 --~f~~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 97 --TFDGLKSLRLLSLHG-NDISVVPEGAF-NDLSALSHLAIGANP 137 (193)
T ss_dssp --TTTTCTTCCEEECCS-SCCCBCCTTTT-TTCTTCCEEECCSSC
T ss_pred --HhCCCCCCCEEECCC-CCCCeeChhhh-hcCccccEEEeCCCC
Confidence 111256666666665 34555544321 245666666666543
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.57 E-value=4.1e-07 Score=71.89 Aligned_cols=110 Identities=16% Similarity=0.227 Sum_probs=78.6
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD 233 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 233 (311)
.++|++|++++++++.+ .+..+..+++|++|+++++ .++.+ +...+..+++|++|+++++. ++.++.. .
T Consensus 27 ~~~l~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~-~-- 95 (177)
T 2o6r_A 27 PSSATRLELESNKLQSL-----PHGVFDKLTQLTKLSLSQN-QIQSL-PDGVFDKLTKLTILYLHENK-LQSLPNG-V-- 95 (177)
T ss_dssp CTTCSEEECCSSCCCCC-----CTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTT-T--
T ss_pred CCCCcEEEeCCCcccEe-----CHHHhcCcccccEEECCCC-cceEe-ChhHccCCCccCEEECCCCC-ccccCHH-H--
Confidence 46889999999877765 1234677889999999885 56655 44446788999999999886 6655321 1
Q ss_pred CcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCC
Q 021510 234 QVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDK 280 (311)
Q Consensus 234 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~ 280 (311)
+..+++|+.|+++++ .++.++... ...+++|++|++.+++-
T Consensus 96 ----~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 96 ----FDKLTQLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp ----TTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCB
T ss_pred ----hhCCcccCEEECcCC-cceEeCHHH-hcCCcccCEEEecCCCe
Confidence 122788999999885 667766543 13578899999988763
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.55 E-value=2e-07 Score=75.01 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=16.1
Q ss_pred CCccEEEEcCCCCCcccccchhhhccCcccEEEEcc
Q 021510 35 NQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVIN 70 (311)
Q Consensus 35 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 70 (311)
++|++|+++++ .++.+ +..+..+++|++|++++
T Consensus 31 ~~l~~L~L~~n-~i~~i--p~~~~~l~~L~~L~Ls~ 63 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLV--PKELSNYKHLTLIDLSN 63 (193)
T ss_dssp TTCCEEECCSS-CCCSC--CGGGGGCTTCCEEECCS
T ss_pred CCCCEEECCCC-cCchh--HHHhhcccCCCEEECCC
Confidence 45555555553 33333 23444555555555554
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.52 E-value=5.4e-07 Score=72.31 Aligned_cols=108 Identities=21% Similarity=0.306 Sum_probs=59.4
Q ss_pred CCccEEEeeeeeceeeeccCCCCC-CCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510 155 PNLEVLEISEINVDQIWHYNHLPV-TFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD 233 (311)
Q Consensus 155 ~~L~~L~l~~~~l~~i~~~~~~p~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 233 (311)
.+|++|++++|+++.+. +. .+..+++|++|+++++ .++.+.+. .+..+++|++|+++++. ++.+... .
T Consensus 29 ~~l~~L~l~~n~i~~~~-----~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~-~-- 97 (192)
T 1w8a_A 29 LHTTELLLNDNELGRIS-----SDGLFGRLPHLVKLELKRN-QLTGIEPN-AFEGASHIQELQLGENK-IKEISNK-M-- 97 (192)
T ss_dssp TTCSEEECCSCCCCSBC-----CSCSGGGCTTCCEEECCSS-CCCCBCTT-TTTTCTTCCEEECCSCC-CCEECSS-S--
T ss_pred CCCCEEECCCCcCCccC-----CccccccCCCCCEEECCCC-CCCCcCHh-HcCCcccCCEEECCCCc-CCccCHH-H--
Confidence 36667777777665541 11 2456667777777664 44444232 25666777777777765 5555321 1
Q ss_pred CcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 234 QVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 234 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
+..+++|+.|+++++ +++.+..... ..+++|++|++.+++
T Consensus 98 ----~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 98 ----FLGLHQLKTLNLYDN-QISCVMPGSF-EHLNSLTSLNLASNP 137 (192)
T ss_dssp ----STTCTTCCEEECCSS-CCCEECTTSS-TTCTTCCEEECTTCC
T ss_pred ----hcCCCCCCEEECCCC-cCCeeCHHHh-hcCCCCCEEEeCCCC
Confidence 111666777777663 4444432221 356667777776654
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.47 E-value=6.1e-07 Score=70.88 Aligned_cols=61 Identities=20% Similarity=0.312 Sum_probs=31.6
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE 221 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 221 (311)
+++|++|++++|+++.+ .+..+..+++|++|+++++ .++.+ +...+..+++|++|++++++
T Consensus 75 l~~L~~L~l~~N~l~~~-----~~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSL-----PNGVFDKLTQLKELALDTN-QLKSV-PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEEECCCCCcccc-----CHHHhhCCcccCEEECcCC-cceEe-CHHHhcCCcccCEEEecCCC
Confidence 45666666666655544 1122445556666666653 34433 33334455566666666554
No 133
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=1.6e-07 Score=73.92 Aligned_cols=89 Identities=19% Similarity=0.312 Sum_probs=42.6
Q ss_pred CccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhcc----CCCcEEEEccccccceeccccc
Q 021510 156 NLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSL----KQLQRLEICSCEDLQEIISENR 231 (311)
Q Consensus 156 ~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l----~~L~~L~l~~c~~l~~~~~~~~ 231 (311)
+|++|++++|.++...- ..+..+++|++|++++|..+++. ....+..+ ++|++|++++|.++++.-.. .
T Consensus 62 ~L~~LDLs~~~Itd~GL-----~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~ 134 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF-----DHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGII-A 134 (176)
T ss_dssp CEEEEEEESCCCCGGGG-----GGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-H
T ss_pred eEeEEeCcCCCccHHHH-----HHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-H
Confidence 46666666664332211 12345556666666666655554 22223322 34666666666555432100 0
Q ss_pred ccCcCCcccCCccCeEecccCccccc
Q 021510 232 TDQVIPYFVFPQLTTLKLQDLPKLRC 257 (311)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~c~~L~~ 257 (311)
. ..+++|++|++++|+++++
T Consensus 135 L------~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 L------HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp G------GGCTTCCEEEEESCTTCCC
T ss_pred H------hcCCCCCEEECCCCCCCCc
Confidence 0 1155555555555555554
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.42 E-value=8.9e-08 Score=92.62 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=30.4
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE 221 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 221 (311)
+++|+.|++++|+++.+ |..+..+++|++|+++++ .++.+ |.. +..+++|++|+++++.
T Consensus 269 l~~L~~L~Ls~N~l~~l------p~~~~~l~~L~~L~L~~N-~l~~l-p~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 269 LSNLRVLDLSHNRLTSL------PAELGSCFQLKYFYFFDN-MVTTL-PWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp GTTCCEEECTTSCCSSC------CSSGGGGTTCSEEECCSS-CCCCC-CSS-TTSCTTCCCEECTTSC
T ss_pred CCCCCEEeCcCCcCCcc------ChhhcCCCCCCEEECCCC-CCCcc-Chh-hhcCCCccEEeCCCCc
Confidence 45555555555554433 444455555555555553 33433 333 4555555555555554
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.38 E-value=5.9e-09 Score=84.33 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=27.5
Q ss_pred CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510 155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE 221 (311)
Q Consensus 155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 221 (311)
++|++|++++|+++.+ | .+..+++|+.|+++++ .+..+.....+..+++|++|++++|+
T Consensus 93 ~~L~~L~L~~N~l~~l------~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 93 DTLEELWISYNQIASL------S-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHCSEEEEEEEECCCH------H-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CcCCEEECcCCcCCcC------C-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 4555555555544443 1 2334445555555553 23322111234455555555555554
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=3.1e-06 Score=73.83 Aligned_cols=66 Identities=11% Similarity=0.051 Sum_probs=51.3
Q ss_pred ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCccc-EEEEecCCCCccccchHHHhccCCCcEEEEccccccceec
Q 021510 152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLT-RLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEII 227 (311)
Q Consensus 152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~-~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 227 (311)
..+.+|+++++.++ ++.+. +..+..+++|+ .+.+.+ .++.+ +...+..+++|+++++.+.. ++.+.
T Consensus 247 ~~~~~L~~l~l~~n-i~~I~-----~~aF~~~~~L~~~l~l~~--~l~~I-~~~aF~~c~~L~~l~l~~n~-i~~I~ 313 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN-LKTIG-----QRVFSNCGRLAGTLELPA--SVTAI-EFGAFMGCDNLRYVLATGDK-ITTLG 313 (329)
T ss_dssp TTCTTCCEEECCTT-CCEEC-----TTTTTTCTTCCEEEEECT--TCCEE-CTTTTTTCTTEEEEEECSSC-CCEEC
T ss_pred hCCCCCCEEECCcc-cceeh-----HHHhhCChhccEEEEEcc--cceEE-chhhhhCCccCCEEEeCCCc-cCccc
Confidence 44789999999987 77772 24578899999 999988 66666 44458899999999997765 77663
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.26 E-value=6.1e-05 Score=67.50 Aligned_cols=216 Identities=10% Similarity=0.083 Sum_probs=108.3
Q ss_pred cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510 9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI 88 (311)
Q Consensus 9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 88 (311)
+|+++.+.+ +++.+.. ..+.. .+|+.+.+.+ .++.+. ...+..|++|+++.+.+. .+..++...
T Consensus 136 ~L~~i~l~~--~i~~I~~--~aF~~-~~L~~i~lp~--~l~~I~-~~aF~~c~~L~~l~l~~n-~l~~I~~~a------- 199 (401)
T 4fdw_A 136 QIAKVVLNE--GLKSIGD--MAFFN-STVQEIVFPS--TLEQLK-EDIFYYCYNLKKADLSKT-KITKLPAST------- 199 (401)
T ss_dssp CCSEEECCT--TCCEECT--TTTTT-CCCCEEECCT--TCCEEC-SSTTTTCTTCCEEECTTS-CCSEECTTT-------
T ss_pred CccEEEeCC--CccEECH--HhcCC-CCceEEEeCC--CccEeh-HHHhhCcccCCeeecCCC-cceEechhh-------
Confidence 567777654 3555422 22233 3688888865 555542 345677888888888752 444444211
Q ss_pred ceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeece
Q 021510 89 EKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVD 168 (311)
Q Consensus 89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 168 (311)
....+|+.+.+.+ +++.+......... .+..+.+... ...... ..+.. .+|+.+.+.+ +++
T Consensus 200 --F~~~~L~~l~lp~--~l~~I~~~aF~~~~-------~L~~l~l~~~--l~~I~~----~aF~~-~~L~~i~lp~-~i~ 260 (401)
T 4fdw_A 200 --FVYAGIEEVLLPV--TLKEIGSQAFLKTS-------QLKTIEIPEN--VSTIGQ----EAFRE-SGITTVKLPN-GVT 260 (401)
T ss_dssp --TTTCCCSEEECCT--TCCEECTTTTTTCT-------TCCCEECCTT--CCEECT----TTTTT-CCCSEEEEET-TCC
T ss_pred --EeecccCEEEeCC--chheehhhHhhCCC-------CCCEEecCCC--ccCccc----ccccc-CCccEEEeCC-Ccc
Confidence 1135566666643 23333332211100 0000111100 000000 01111 4677777733 344
Q ss_pred eeeccCCCCCCCCCCCcccEEEEecCCC----CccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510 169 QIWHYNHLPVTFPRFQNLTRLIVWHCHK----LKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL 244 (311)
Q Consensus 169 ~i~~~~~~p~~~~~l~~L~~L~i~~c~~----l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 244 (311)
.+. ...+.++++|+.+.+.+... ...+ +...+..+++|+++.+.+ .++.+.. .++..+++|
T Consensus 261 ~I~-----~~aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~~--~i~~I~~-------~aF~~c~~L 325 (401)
T 4fdw_A 261 NIA-----SRAFYYCPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFEIPE--SIRILGQ-------GLLGGNRKV 325 (401)
T ss_dssp EEC-----TTTTTTCTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEECCCT--TCCEECT-------TTTTTCCSC
T ss_pred EEC-----hhHhhCCCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEEeCC--ceEEEhh-------hhhcCCCCc
Confidence 441 23466777888887766321 1123 333466777888877763 2555421 122226778
Q ss_pred CeEecccCcccccccCCCcccCCCcccEEEEecC
Q 021510 245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGC 278 (311)
Q Consensus 245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c 278 (311)
+.+.+.+ .++.+....+ ..| +|+.+++.+.
T Consensus 326 ~~l~lp~--~l~~I~~~aF-~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 326 TQLTIPA--NVTQINFSAF-NNT-GIKEVKVEGT 355 (401)
T ss_dssp CEEEECT--TCCEECTTSS-SSS-CCCEEEECCS
T ss_pred cEEEECc--cccEEcHHhC-CCC-CCCEEEEcCC
Confidence 8887753 3666655443 355 7888888664
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.25 E-value=3e-08 Score=80.09 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=70.0
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD 233 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 233 (311)
+++|++|++++|.++.+ |..+..+++|+.|+++++ .+..+ + .+..+++|++|++++|. ++.+...+...
T Consensus 69 l~~L~~L~l~~n~l~~l------~~~~~~~~~L~~L~L~~N-~l~~l-~--~~~~l~~L~~L~l~~N~-i~~~~~~~~l~ 137 (198)
T 1ds9_A 69 MENLRILSLGRNLIKKI------ENLDAVADTLEELWISYN-QIASL-S--GIEKLVNLRVLYMSNNK-ITNWGEIDKLA 137 (198)
T ss_dssp HTTCCEEEEEEEEECSC------SSHHHHHHHCSEEEEEEE-ECCCH-H--HHHHHHHSSEEEESEEE-CCCHHHHHHHT
T ss_pred CCCCCEEECCCCCcccc------cchhhcCCcCCEEECcCC-cCCcC-C--ccccCCCCCEEECCCCc-CCchhHHHHHh
Confidence 68889999999977755 444456689999999996 55555 3 36788999999999987 66543211111
Q ss_pred CcCCcccCCccCeEecccCcccccccCC--------CcccCCCcccEEE
Q 021510 234 QVIPYFVFPQLTTLKLQDLPKLRCLYPG--------MHSSEWPALEILL 274 (311)
Q Consensus 234 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~--------~~~~~~~~L~~L~ 274 (311)
.+++|+.|++++++--...+.. .....+++|++|+
T Consensus 138 ------~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 138 ------ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ------TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ------cCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 2889999999987542222221 0113567777775
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.22 E-value=6.3e-05 Score=67.41 Aligned_cols=237 Identities=12% Similarity=0.084 Sum_probs=137.5
Q ss_pred CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510 8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA 87 (311)
Q Consensus 8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 87 (311)
..++++.+.+ +++.+.. ..+.. .+|+.+.+.+ +++.+.. ..+.+ .+|+++.+.+ .++.+..
T Consensus 113 ~~l~~i~ip~--~i~~I~~--~aF~~-~~L~~i~l~~--~i~~I~~-~aF~~-~~L~~i~lp~--~l~~I~~-------- 173 (401)
T 4fdw_A 113 KGYNEIILPN--SVKSIPK--DAFRN-SQIAKVVLNE--GLKSIGD-MAFFN-STVQEIVFPS--TLEQLKE-------- 173 (401)
T ss_dssp SSCSEEECCT--TCCEECT--TTTTT-CCCSEEECCT--TCCEECT-TTTTT-CCCCEEECCT--TCCEECS--------
T ss_pred CCccEEEECC--ccCEehH--hhccc-CCccEEEeCC--CccEECH-HhcCC-CCceEEEeCC--CccEehH--------
Confidence 4566666655 3455432 22333 3799999865 3665532 33444 4799999875 4555542
Q ss_pred cceeeecccceEecCCCCCccccccCCCCCCCCCCccccccccccc----ccccccccccccccccccccCCCccEEEee
Q 021510 88 IEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAM----YCSSEITLDISTLLFNEKVALPNLEVLEIS 163 (311)
Q Consensus 88 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l----~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (311)
..+..+++|+.+++.+. +++.++....... .+..+.+ ..+.. ..+..+++|+++.+.
T Consensus 174 ~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~--------~L~~l~lp~~l~~I~~----------~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKT-KITKLPASTFVYA--------GIEEVLLPVTLKEIGS----------QAFLKTSQLKTIEIP 234 (401)
T ss_dssp STTTTCTTCCEEECTTS-CCSEECTTTTTTC--------CCSEEECCTTCCEECT----------TTTTTCTTCCCEECC
T ss_pred HHhhCcccCCeeecCCC-cceEechhhEeec--------ccCEEEeCCchheehh----------hHhhCCCCCCEEecC
Confidence 23456789999999764 5666655433210 0111111 11111 123446788999887
Q ss_pred eeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccccc----ceecccccccCcCCcc
Q 021510 164 EINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDL----QEIISENRTDQVIPYF 239 (311)
Q Consensus 164 ~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l----~~~~~~~~~~~~~~~~ 239 (311)
.+ ++.+.. ..+.+ .+|+.+.+.+ .++.+ +...+..+++|+++.+.+...- ..+ ...++.
T Consensus 235 ~~-l~~I~~-----~aF~~-~~L~~i~lp~--~i~~I-~~~aF~~c~~L~~l~l~~~~~~~~~~~~I-------~~~aF~ 297 (401)
T 4fdw_A 235 EN-VSTIGQ-----EAFRE-SGITTVKLPN--GVTNI-ASRAFYYCPELAEVTTYGSTFNDDPEAMI-------HPYCLE 297 (401)
T ss_dssp TT-CCEECT-----TTTTT-CCCSEEEEET--TCCEE-CTTTTTTCTTCCEEEEESSCCCCCTTCEE-------CTTTTT
T ss_pred CC-ccCccc-----ccccc-CCccEEEeCC--CccEE-ChhHhhCCCCCCEEEeCCccccCCcccEE-------CHHHhh
Confidence 74 555522 22344 6899999954 56666 4445788999999999876411 122 122333
Q ss_pred cCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCccccccccc
Q 021510 240 VFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL 304 (311)
Q Consensus 240 ~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~ 304 (311)
.+++|+.+.+.+ .++.+....+ ..|++|+.+.+.+ +++.++.+-........+.+..+.+
T Consensus 298 ~c~~L~~l~l~~--~i~~I~~~aF-~~c~~L~~l~lp~--~l~~I~~~aF~~~~L~~l~l~~n~~ 357 (401)
T 4fdw_A 298 GCPKLARFEIPE--SIRILGQGLL-GGNRKVTQLTIPA--NVTQINFSAFNNTGIKEVKVEGTTP 357 (401)
T ss_dssp TCTTCCEECCCT--TCCEECTTTT-TTCCSCCEEEECT--TCCEECTTSSSSSCCCEEEECCSSC
T ss_pred CCccCCeEEeCC--ceEEEhhhhh-cCCCCccEEEECc--cccEEcHHhCCCCCCCEEEEcCCCC
Confidence 488999999874 5778876553 3688999998843 3555554433333444444444433
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.18 E-value=8.7e-07 Score=85.70 Aligned_cols=114 Identities=21% Similarity=0.197 Sum_probs=85.8
Q ss_pred ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccc
Q 021510 152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENR 231 (311)
Q Consensus 152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 231 (311)
..+++|+.|++++|++..+ |..+..+++|++|+++++ .+..+ |.. +..+++|++|++++|. ++.++. .
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l------~~~~~~l~~L~~L~Ls~N-~l~~l-p~~-~~~l~~L~~L~Ls~N~-l~~lp~--~ 288 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNI------SANIFKYDFLTRLYLNGN-SLTEL-PAE-IKNLSNLRVLDLSHNR-LTSLPA--E 288 (727)
T ss_dssp -CCCCCCEEECTTSCCSCC------CGGGGGCCSCSCCBCTTS-CCSCC-CGG-GGGGTTCCEEECTTSC-CSSCCS--S
T ss_pred ccCCCCcEEECCCCCCCCC------ChhhcCCCCCCEEEeeCC-cCccc-Chh-hhCCCCCCEEeCcCCc-CCccCh--h
Confidence 4478899999999987766 555668889999999985 55555 654 6889999999999997 775532 2
Q ss_pred ccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCcccccc
Q 021510 232 TDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAA 286 (311)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~ 286 (311)
.. .+++|+.|+++++ .++.++... ..+++|++|++++++--..+|.
T Consensus 289 ~~------~l~~L~~L~L~~N-~l~~lp~~~--~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 289 LG------SCFQLKYFYFFDN-MVTTLPWEF--GNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp GG------GGTTCSEEECCSS-CCCCCCSST--TSCTTCCCEECTTSCCCSHHHH
T ss_pred hc------CCCCCCEEECCCC-CCCccChhh--hcCCCccEEeCCCCccCCCChH
Confidence 22 2889999999986 677887664 5789999999998875444443
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.17 E-value=5.6e-06 Score=64.95 Aligned_cols=83 Identities=24% Similarity=0.325 Sum_probs=54.5
Q ss_pred CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510 155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ 234 (311)
Q Consensus 155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 234 (311)
++|+.|++++|+++.+ .|..+..+++|++|+++++ .++.+ +...+..+++|++|+++++. ++.+... .
T Consensus 30 ~~l~~L~L~~N~i~~~-----~~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L~~L~L~~N~-l~~~~~~-~--- 97 (170)
T 3g39_A 30 TTTQVLYLYDNQITKL-----EPGVFDRLTQLTRLDLDNN-QLTVL-PAGVFDKLTQLTQLSLNDNQ-LKSIPRG-A--- 97 (170)
T ss_dssp TTCSEEECCSSCCCCC-----CTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTT-T---
T ss_pred CCCcEEEcCCCcCCcc-----ChhhhcCcccCCEEECCCC-CcCcc-ChhhccCCCCCCEEECCCCc-cCEeCHH-H---
Confidence 6778888888877765 2344667778888888874 56655 44445677888888888775 6655321 1
Q ss_pred cCCcccCCccCeEecccC
Q 021510 235 VIPYFVFPQLTTLKLQDL 252 (311)
Q Consensus 235 ~~~~~~~~~L~~L~l~~c 252 (311)
+..+++|+.|++++.
T Consensus 98 ---~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 98 ---FDNLKSLTHIWLLNN 112 (170)
T ss_dssp ---TTTCTTCCEEECCSS
T ss_pred ---hcCCCCCCEEEeCCC
Confidence 112677777777764
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.15 E-value=5.2e-06 Score=65.14 Aligned_cols=104 Identities=17% Similarity=0.268 Sum_probs=77.6
Q ss_pred CccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCc
Q 021510 156 NLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQV 235 (311)
Q Consensus 156 ~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 235 (311)
..+.+++++++++.+ |..+ .++|+.|+++++ .++.+.+ ..+..+++|++|+++++. ++.+... .
T Consensus 10 ~~~~l~~s~n~l~~i------p~~~--~~~l~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~--~--- 73 (170)
T 3g39_A 10 SGTTVDCSGKSLASV------PTGI--PTTTQVLYLYDN-QITKLEP-GVFDRLTQLTRLDLDNNQ-LTVLPAG--V--- 73 (170)
T ss_dssp ETTEEECTTSCCSSC------CSCC--CTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC-CCCCCTT--T---
T ss_pred CCCEEEeCCCCcCcc------CccC--CCCCcEEEcCCC-cCCccCh-hhhcCcccCCEEECCCCC-cCccChh--h---
Confidence 347888888888876 4433 378999999994 6666634 347889999999999997 7766431 1
Q ss_pred CCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 236 IPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 236 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
+..+++|+.|++++ .+++.++.+.. ..+++|++|++.+++
T Consensus 74 --f~~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 74 --FDKLTQLTQLSLND-NQLKSIPRGAF-DNLKSLTHIWLLNNP 113 (170)
T ss_dssp --TTTCTTCCEEECCS-SCCCCCCTTTT-TTCTTCCEEECCSSC
T ss_pred --ccCCCCCCEEECCC-CccCEeCHHHh-cCCCCCCEEEeCCCC
Confidence 12289999999998 47788776532 478999999999864
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.13 E-value=7.8e-06 Score=64.44 Aligned_cols=84 Identities=23% Similarity=0.318 Sum_probs=57.0
Q ss_pred CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510 155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ 234 (311)
Q Consensus 155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 234 (311)
++|++|++++|+++.+ .|..+..+++|++|+++++ .++.+ +...+..+++|++|+++++. ++.++. .
T Consensus 33 ~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~L~~N~-l~~l~~--~--- 99 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKL-----EPGVFDHLVNLQQLYFNSN-KLTAI-PTGVFDKLTQLTQLDLNDNH-LKSIPR--G--- 99 (174)
T ss_dssp TTCSEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT--T---
T ss_pred CCCcEEEeCCCCcccc-----CHHHhcCCcCCCEEECCCC-CCCcc-ChhHhCCcchhhEEECCCCc-cceeCH--H---
Confidence 6788888888877765 2345677888888888884 66655 44445678888888888876 665532 1
Q ss_pred cCCcccCCccCeEecccCc
Q 021510 235 VIPYFVFPQLTTLKLQDLP 253 (311)
Q Consensus 235 ~~~~~~~~~L~~L~l~~c~ 253 (311)
.+..+++|+.|++.+++
T Consensus 100 --~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 100 --AFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp --TTTTCTTCSEEECCSSC
T ss_pred --HhccccCCCEEEeCCCC
Confidence 11227788888887643
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.12 E-value=6.6e-06 Score=64.86 Aligned_cols=102 Identities=22% Similarity=0.345 Sum_probs=76.6
Q ss_pred cEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCC
Q 021510 158 EVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIP 237 (311)
Q Consensus 158 ~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 237 (311)
+.+++++++++.+ |..+. ++|+.|+++++ .++.+.+ ..+..+++|++|+++++. ++.++.. .
T Consensus 15 ~~l~~~~n~l~~i------P~~~~--~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~i~~~--~----- 76 (174)
T 2r9u_A 15 TLVNCQNIRLASV------PAGIP--TDKQRLWLNNN-QITKLEP-GVFDHLVNLQQLYFNSNK-LTAIPTG--V----- 76 (174)
T ss_dssp SEEECCSSCCSSC------CSCCC--TTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTT--T-----
T ss_pred cEEEeCCCCCCcc------CCCcC--CCCcEEEeCCC-CccccCH-HHhcCCcCCCEEECCCCC-CCccChh--H-----
Confidence 6788888888776 44433 79999999995 5666634 447889999999999996 7776431 1
Q ss_pred cccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510 238 YFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD 279 (311)
Q Consensus 238 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~ 279 (311)
+..+++|+.|++++ .+++.++.+.. ..+++|++|++.+++
T Consensus 77 ~~~l~~L~~L~L~~-N~l~~l~~~~~-~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 77 FDKLTQLTQLDLND-NHLKSIPRGAF-DNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCTTTT-TTCTTCSEEECCSSC
T ss_pred hCCcchhhEEECCC-CccceeCHHHh-ccccCCCEEEeCCCC
Confidence 12289999999998 57777776532 468999999999875
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.91 E-value=9.4e-06 Score=71.73 Aligned_cols=66 Identities=17% Similarity=0.133 Sum_probs=32.7
Q ss_pred CCCcccEEEEecCCCCccccchHHH--hccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccC
Q 021510 182 RFQNLTRLIVWHCHKLKYIFSASMI--RSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDL 252 (311)
Q Consensus 182 ~l~~L~~L~i~~c~~l~~~~~~~~~--~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 252 (311)
.+++|+.|.+.+|...... ...++ +.+++|++|+++.+. +.+.-... .. .....+++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~-~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~-L~--~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVV-VEMFLESDILPQLETMDISAGV-LTDEGARL-LL--DHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHH-HHHHHHCSSGGGCSEEECCSSC-CBHHHHHH-HH--TTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHH-HHHHHhCccCCCCCEEECCCCC-CChHHHHH-HH--hhcccCCcceEEECCCC
Confidence 4667777777776433211 11111 246777777776654 44310000 00 00012667777777665
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.89 E-value=2.4e-05 Score=68.51 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=41.1
Q ss_pred ccCCCccEEEeee-eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccccccee
Q 021510 152 VALPNLEVLEISE-INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEI 226 (311)
Q Consensus 152 ~~l~~L~~L~l~~-~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 226 (311)
..+.+|++|++++ |+++.+. +..+..+++|+.|+++++ .++.+ +...+..+++|++|+++++. ++.+
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~-----~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~ 95 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLE-----LRDLRGLGELRNLTIVKS-GLRFV-APDAFHFTPRLSRLNLSFNA-LESL 95 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEEC-----GGGSCSCCCCSEEECCSS-CCCEE-CTTGGGSCSCCCEEECCSSC-CSCC
T ss_pred CCCCCeeEEEccCCCCCCCcC-----hhHhccccCCCEEECCCC-cccee-CHHHhcCCcCCCEEeCCCCc-ccee
Confidence 3456677777775 6666661 233566777777777774 55555 33335667777777777765 5554
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.82 E-value=2.8e-07 Score=81.96 Aligned_cols=93 Identities=17% Similarity=0.036 Sum_probs=42.8
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccc---hHHHhccCCCcEEEEccccccceecccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFS---ASMIRSLKQLQRLEICSCEDLQEIISEN 230 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 230 (311)
.++|++|++++|.++...... ++..+...++|++|++++|. +.+... ...+...++|++|++++|. ++......
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~-l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~ 230 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAV-LMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALA 230 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHH-HHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHH-HHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHH
Confidence 356677777776544321000 01122344567777777653 443210 1123455667777777765 43221000
Q ss_pred cccCcCCcccCCccCeEecccC
Q 021510 231 RTDQVIPYFVFPQLTTLKLQDL 252 (311)
Q Consensus 231 ~~~~~~~~~~~~~L~~L~l~~c 252 (311)
- .......++|++|+++++
T Consensus 231 l---~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 231 L---ARAAREHPSLELLHLYFN 249 (372)
T ss_dssp H---HHHHHHCSSCCEEECTTS
T ss_pred H---HHHHHhCCCCCEEeccCC
Confidence 0 000011466777777665
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.75 E-value=5.9e-05 Score=65.98 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=46.0
Q ss_pred EeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceee
Q 021510 13 LILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIE 92 (311)
Q Consensus 13 L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~ 92 (311)
++.++..+++.+ +. +..+++|++|+++++..++.+. +..+..+++|++|+++++ .+..++. ..+..
T Consensus 13 v~~~~~n~l~~i---p~-l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~--------~~~~~ 78 (347)
T 2ifg_A 13 LRCTRDGALDSL---HH-LPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKS-GLRFVAP--------DAFHF 78 (347)
T ss_dssp EECCSSCCCTTT---TT-SCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSS-CCCEECT--------TGGGS
T ss_pred EEcCCCCCCCcc---CC-CCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCC-ccceeCH--------HHhcC
Confidence 444443245554 22 5666677777776545666552 244566777777777664 4544442 12345
Q ss_pred ecccceEecCCCCCcccc
Q 021510 93 FAQLRSLSLGNLPEVTSF 110 (311)
Q Consensus 93 l~~L~~L~l~~~~~l~~l 110 (311)
+++|++|+|+++ +++.+
T Consensus 79 l~~L~~L~l~~N-~l~~~ 95 (347)
T 2ifg_A 79 TPRLSRLNLSFN-ALESL 95 (347)
T ss_dssp CSCCCEEECCSS-CCSCC
T ss_pred CcCCCEEeCCCC-cccee
Confidence 666666666665 44443
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.75 E-value=1e-05 Score=71.47 Aligned_cols=175 Identities=17% Similarity=0.161 Sum_probs=96.8
Q ss_pred ccCCcccEEeecccccccc--c-ccc----cccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEcccccccee
Q 021510 5 DAFPLLQSLILHNLINMER--L-CID----RLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEI 77 (311)
Q Consensus 5 ~~l~~L~~L~L~~~~~l~~--l-~~~----~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~ 77 (311)
..|++|+.|.+.+.. .++ + +.. ...+..+++|+.|+++++..+. + +. + .+++|++|.+..|..-...
T Consensus 136 ~~l~~L~~L~l~~~~-~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l--~~-~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 136 EKFAHFEGLFWGDID-FEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-I--GK-K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HHHTTCSEEEECCCC-TTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-C--CS-C-BCTTCSEEEEECSBCCHHH
T ss_pred hhcchhhheeecCcc-hhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-e--cc-c-cCCCCcEEEEecCCCChHH
Confidence 468999999997642 111 0 000 1223567999999999874332 2 22 2 3889999999876422111
Q ss_pred cccccccccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCc
Q 021510 78 FSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNL 157 (311)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L 157 (311)
.. ......+|+|++|+++...+...-...... . . .. .....+++|
T Consensus 210 l~-------~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~--l--------------~-----------~~-l~~~~~p~L 254 (362)
T 2ra8_A 210 VE-------DILGSDLPNLEKLVLYVGVEDYGFDGDMNV--F--------------R-----------PL-FSKDRFPNL 254 (362)
T ss_dssp HH-------HHHHSBCTTCCEEEEECBCGGGTCCSCGGG--T--------------G-----------GG-SCTTTCTTC
T ss_pred HH-------HHHHccCCCCcEEEEeccccccccchhHHH--H--------------H-----------HH-HhcCCCCCc
Confidence 00 001136899999998532211000000000 0 0 00 001237999
Q ss_pred cEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchH---HHhccCCCcEEEEccccccc
Q 021510 158 EVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSAS---MIRSLKQLQRLEICSCEDLQ 224 (311)
Q Consensus 158 ~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~---~~~~l~~L~~L~l~~c~~l~ 224 (311)
+.|++.+|.+....... +.. ...+++|+.|+++. +.+.+..... .+..+++|++|+++.|. +.
T Consensus 255 r~L~L~~~~i~~~~~~~-la~-a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~ 320 (362)
T 2ra8_A 255 KWLGIVDAEEQNVVVEM-FLE-SDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY-LS 320 (362)
T ss_dssp CEEEEESCTTHHHHHHH-HHH-CSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CC
T ss_pred CEEeCCCCCCchHHHHH-HHh-CccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc-CC
Confidence 99999998544210000 000 12567999999976 4566532111 13568999999999886 54
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.53 E-value=3.4e-06 Score=74.97 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=7.1
Q ss_pred cCCCcEEEEcccc
Q 021510 209 LKQLQRLEICSCE 221 (311)
Q Consensus 209 l~~L~~L~l~~c~ 221 (311)
.++|++|++++|+
T Consensus 238 ~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 238 HPSLELLHLYFNE 250 (372)
T ss_dssp CSSCCEEECTTSS
T ss_pred CCCCCEEeccCCC
Confidence 4555555555554
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.06 E-value=0.023 Score=50.36 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=45.8
Q ss_pred CCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCccccccc
Q 021510 180 FPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLY 259 (311)
Q Consensus 180 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 259 (311)
+..+.+|+.+.+.+ .++.+ +...+.++.+|+++++.+. ++.+-. .++..+.+|+++.+.. .++.+.
T Consensus 293 F~~~~~L~~i~l~~--~i~~I-~~~aF~~c~~L~~i~lp~~--v~~I~~-------~aF~~c~~L~~i~lp~--~l~~I~ 358 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFI-GEEAFESCTSLVSIDLPYL--VEEIGK-------RSFRGCTSLSNINFPL--SLRKIG 358 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEE-CTTTTTTCTTCCEECCCTT--CCEECT-------TTTTTCTTCCEECCCT--TCCEEC
T ss_pred cccccccccccccc--cccee-chhhhcCCCCCCEEEeCCc--ccEEhH-------HhccCCCCCCEEEECc--cccEeh
Confidence 44566777776654 34444 3333566777777777532 444411 1222367777777753 366665
Q ss_pred CCCcccCCCcccEEEEe
Q 021510 260 PGMHSSEWPALEILLVY 276 (311)
Q Consensus 260 ~~~~~~~~~~L~~L~i~ 276 (311)
...+ ..|++|+++++.
T Consensus 359 ~~aF-~~C~~L~~i~lp 374 (394)
T 4fs7_A 359 ANAF-QGCINLKKVELP 374 (394)
T ss_dssp TTTB-TTCTTCCEEEEE
T ss_pred HHHh-hCCCCCCEEEEC
Confidence 5442 367777777764
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.57 E-value=0.00094 Score=56.12 Aligned_cols=63 Identities=24% Similarity=0.136 Sum_probs=33.7
Q ss_pred cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccC--cccEEEEccccc
Q 021510 6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLP--RLERIAVINCSK 73 (311)
Q Consensus 6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~--~L~~L~i~~c~~ 73 (311)
.+|+|++|+|++. ++..+...+..++.+++|++|+++++ +++.+ ..+..+. +|++|.+.+++-
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~---~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE---RELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG---GGGGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCc---hhhhhcccCCcceEEccCCcC
Confidence 3567777777764 35443211222346677777777663 44444 1222233 677777766653
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.52 E-value=0.072 Score=47.12 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=19.6
Q ss_pred cCCccCeEecccCcccccccCCCcccCCCcccEEEE
Q 021510 240 VFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLV 275 (311)
Q Consensus 240 ~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i 275 (311)
.+.+|+++.+.+ .++.+....+ ..|.+|+.+.+
T Consensus 318 ~c~~L~~i~lp~--~v~~I~~~aF-~~c~~L~~i~l 350 (394)
T 4fs7_A 318 SCTSLVSIDLPY--LVEEIGKRSF-RGCTSLSNINF 350 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTTTT-TTCTTCCEECC
T ss_pred CCCCCCEEEeCC--cccEEhHHhc-cCCCCCCEEEE
Confidence 367777777753 3555554432 35677777766
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.44 E-value=0.25 Score=43.60 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=45.8
Q ss_pred CCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCccccccc
Q 021510 180 FPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLY 259 (311)
Q Consensus 180 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 259 (311)
+.++.+|+.+.+.. .+..+ +...+..+.+|+++.+.+. ++.+- ..++..+.+|+++.|-+ .++.+.
T Consensus 284 F~~c~~L~~i~l~~--~i~~I-~~~aF~~c~~L~~i~lp~~--v~~I~-------~~aF~~C~~L~~i~ip~--sv~~I~ 349 (394)
T 4gt6_A 284 FMNCPALQDIEFSS--RITEL-PESVFAGCISLKSIDIPEG--ITQIL-------DDAFAGCEQLERIAIPS--SVTKIP 349 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEE-CTTTTTTCTTCCEEECCTT--CCEEC-------TTTTTTCTTCCEEEECT--TCCBCC
T ss_pred cccccccccccCCC--ccccc-CceeecCCCCcCEEEeCCc--ccEeh-------HhHhhCCCCCCEEEECc--ccCEEh
Confidence 44556666665542 34444 3334566667777766532 44431 12223367777777743 355665
Q ss_pred CCCcccCCCcccEEEEec
Q 021510 260 PGMHSSEWPALEILLVYG 277 (311)
Q Consensus 260 ~~~~~~~~~~L~~L~i~~ 277 (311)
...+ ..|.+|+.+++.+
T Consensus 350 ~~aF-~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 350 ESAF-SNCTALNNIEYSG 366 (394)
T ss_dssp GGGG-TTCTTCCEEEESS
T ss_pred HhHh-hCCCCCCEEEECC
Confidence 4432 3678888888765
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.87 E-value=0.0018 Score=54.36 Aligned_cols=64 Identities=20% Similarity=0.211 Sum_probs=35.2
Q ss_pred cCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510 153 ALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE 221 (311)
Q Consensus 153 ~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 221 (311)
.+++|+.|++++|+++.+.. +|..+..+++|+.|++++ +.+..+.....+..+ +|++|++.+++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~---l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDD---MSSIVQKAPNLKILNLSG-NELKSERELDKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGG---GTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTS-CCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCcc---chhHHhhCCCCCEEECCC-CccCCchhhhhcccC-CcceEEccCCc
Confidence 46778888888886665411 112233566777777766 344433121112222 67777777666
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.49 E-value=0.0007 Score=53.62 Aligned_cols=66 Identities=14% Similarity=0.072 Sum_probs=31.6
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEE--ecCCCCccccc---hHHHhccCCCcEEEEcccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIV--WHCHKLKYIFS---ASMIRSLKQLQRLEICSCE 221 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i--~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~ 221 (311)
.++|++|++++|.+....... +...+...++|++|++ .+ +.+..... ...+...+.|++|++++|.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~-l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILA-LVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHH-HHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCCcCEEECcCCcCCHHHHHH-HHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 356666666666443210000 0122334456777777 33 33433211 1224445677777777765
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.02 E-value=0.17 Score=44.36 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=37.1
Q ss_pred cCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEc
Q 021510 153 ALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEIC 218 (311)
Q Consensus 153 ~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~ 218 (311)
.+.+|+++.+.++.++.+.. ..+.++.+|+.+.+.+ .++.+ +...+.++++|+++.+.
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~-----~aF~~c~~L~~i~lp~--~l~~I-~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEP-----RVFMDCVKLSSVTLPT--ALKTI-QVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCTTCCEEEECCTTCCEECT-----TTTTTCTTCCEEECCT--TCCEE-CTTTTTTCTTCCCCCCC
T ss_pred cccccccccccccccceehh-----hhhcCCCCCCEEEcCc--cccEE-HHHHhhCCCCCCEEEEC
Confidence 36778888887766666622 3456777888887754 34544 33346667777777664
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.25 E-value=0.0014 Score=51.86 Aligned_cols=125 Identities=10% Similarity=0.022 Sum_probs=68.4
Q ss_pred ccCCCCccEEEEcCCCCCccccc---chhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCc
Q 021510 31 VESFNQLKNIEAYNCDKLSNIFW---FSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEV 107 (311)
Q Consensus 31 ~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 107 (311)
+...+.|++|++++|..+..... ...+...++|++|++++|. +..-.... ....+...++|++|+++++ .+
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~----l~~~L~~n~~L~~L~L~~N-~i 105 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFA----LAEMLKVNNTLKSLNVESN-FI 105 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHH----HHHHHHHCSSCCEEECCSS-CC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHH----HHHHHHhCCCcCEEECcCC-cC
Confidence 34568899999988755554211 2334456789999998874 22100000 0012234467888988887 34
Q ss_pred cccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEe--eeeeceeeeccCCCCCCCCCCCc
Q 021510 108 TSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEI--SEINVDQIWHYNHLPVTFPRFQN 185 (311)
Q Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l--~~~~l~~i~~~~~~p~~~~~l~~ 185 (311)
++... ..+...+...++|++|++ ++|.+....... +...+...++
T Consensus 106 ~~~g~--------------------------------~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~-l~~~L~~n~~ 152 (185)
T 1io0_A 106 SGSGI--------------------------------LALVEALQSNTSLIELRIDNQSQPLGNNVEME-IANMLEKNTT 152 (185)
T ss_dssp CHHHH--------------------------------HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH-HHHHHHHCSS
T ss_pred CHHHH--------------------------------HHHHHHHHhCCCceEEEecCCCCCCCHHHHHH-HHHHHHhCCC
Confidence 43211 011122334678999999 667554321000 0112334468
Q ss_pred ccEEEEecC
Q 021510 186 LTRLIVWHC 194 (311)
Q Consensus 186 L~~L~i~~c 194 (311)
|++|+++++
T Consensus 153 L~~L~L~~n 161 (185)
T 1io0_A 153 LLKFGYHFT 161 (185)
T ss_dssp CCEEECCCS
T ss_pred cCEEeccCC
Confidence 999999886
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.26 E-value=0.43 Score=42.00 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=38.5
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD 233 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 233 (311)
+.+|+.+.+.. .++.+.. ..+..+.+|+.+.|.+ +++.+ +...+..+.+|+++.+-+. ++.+-.
T Consensus 287 c~~L~~i~l~~-~i~~I~~-----~aF~~c~~L~~i~lp~--~v~~I-~~~aF~~C~~L~~i~ip~s--v~~I~~----- 350 (394)
T 4gt6_A 287 CPALQDIEFSS-RITELPE-----SVFAGCISLKSIDIPE--GITQI-LDDAFAGCEQLERIAIPSS--VTKIPE----- 350 (394)
T ss_dssp CTTCCEEECCT-TCCEECT-----TTTTTCTTCCEEECCT--TCCEE-CTTTTTTCTTCCEEEECTT--CCBCCG-----
T ss_pred ccccccccCCC-cccccCc-----eeecCCCCcCEEEeCC--cccEe-hHhHhhCCCCCCEEEECcc--cCEEhH-----
Confidence 45555555542 3334411 2345566666666653 34444 2233556666666666432 333311
Q ss_pred CcCCcccCCccCeEeccc
Q 021510 234 QVIPYFVFPQLTTLKLQD 251 (311)
Q Consensus 234 ~~~~~~~~~~L~~L~l~~ 251 (311)
.++..+++|+.+.+.+
T Consensus 351 --~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 351 --SAFSNCTALNNIEYSG 366 (394)
T ss_dssp --GGGTTCTTCCEEEESS
T ss_pred --hHhhCCCCCCEEEECC
Confidence 1122266666666654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.25 E-value=2 Score=37.31 Aligned_cols=82 Identities=12% Similarity=0.183 Sum_probs=42.0
Q ss_pred CCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCccccccc
Q 021510 180 FPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLY 259 (311)
Q Consensus 180 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 259 (311)
+.++.+|+.+.+.. .+..+ +...+..+++|+++.+.+.. ++.+.. .++..+.+|+++.+.+ .++.+.
T Consensus 259 F~~~~~l~~i~l~~--~i~~i-~~~aF~~c~~L~~i~l~~~~-i~~I~~-------~aF~~c~~L~~i~lp~--~l~~I~ 325 (379)
T 4h09_A 259 LQNCTALKTLNFYA--KVKTV-PYLLCSGCSNLTKVVMDNSA-IETLEP-------RVFMDCVKLSSVTLPT--ALKTIQ 325 (379)
T ss_dssp TTTCTTCCEEEECC--CCSEE-CTTTTTTCTTCCEEEECCTT-CCEECT-------TTTTTCTTCCEEECCT--TCCEEC
T ss_pred cceeehhccccccc--cceec-cccccccccccccccccccc-cceehh-------hhhcCCCCCCEEEcCc--cccEEH
Confidence 34455666665543 33333 33335566667777665443 444411 1222366777777642 355554
Q ss_pred CCCcccCCCcccEEEE
Q 021510 260 PGMHSSEWPALEILLV 275 (311)
Q Consensus 260 ~~~~~~~~~~L~~L~i 275 (311)
...+ ..|.+|+.+.+
T Consensus 326 ~~aF-~~C~~L~~i~i 340 (379)
T 4h09_A 326 VYAF-KNCKALSTISY 340 (379)
T ss_dssp TTTT-TTCTTCCCCCC
T ss_pred HHHh-hCCCCCCEEEE
Confidence 4332 35666666655
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=80.29 E-value=1.2 Score=32.43 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=19.1
Q ss_pred cccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510 185 NLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE 221 (311)
Q Consensus 185 ~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 221 (311)
+|+.|++++ +.++.+ +...+..+++|++|++.+++
T Consensus 32 ~l~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTG-NNLTAL-PPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTT-SCCSSC-CTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCC-CcCCcc-ChhhhhhccccCEEEecCCC
Confidence 456666655 345544 33345556666666666544
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=73.91 E-value=3.6 Score=29.82 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=20.5
Q ss_pred CCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCc
Q 021510 210 KQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLP 253 (311)
Q Consensus 210 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 253 (311)
++|++|+++++. ++.+... .+..+++|+.|.+.+.|
T Consensus 31 ~~l~~L~Ls~N~-l~~l~~~-------~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNN-LTALPPG-------LLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSC-CSSCCTT-------TGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCCc-CCccChh-------hhhhccccCEEEecCCC
Confidence 357777777776 6555321 12226667777766543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=41.53 E-value=3.2 Score=32.71 Aligned_cols=66 Identities=17% Similarity=0.059 Sum_probs=31.9
Q ss_pred CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCC--CCcccc---chHHHhccCCCcEEEEccc
Q 021510 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCH--KLKYIF---SASMIRSLKQLQRLEICSC 220 (311)
Q Consensus 154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~--~l~~~~---~~~~~~~l~~L~~L~l~~c 220 (311)
-..|++|++++|.|....... +...+..=..|++|+++++. .+.... -...+..-+.|++|+++.+
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~a-la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLAR-LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHH-HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCccCeEecCCCcCCHHHHHH-HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 467777777777544221000 01122233457777776542 222211 1123444566777777644
Done!