BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>021511
MAMNQIVSKLFISLVILQAVLFPCNVSSAKAAPESSNLFREYIGAEFNNVKFTDVPINSN
VEFHYILSFAIDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALSLGGDS
VSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKT
LKKNGAISFASIAPYDDDQVQSHYLALWKSYGDLIDYVNFQFYAYAQGTSVSQFMDYFKT
QSSNYKGGKVLVSFISDGSGGLAPGDGFFTACSRLKSQKQLHGIFVWSADDSKKNGFRYE
KQSQALLAAAH

High Scoring Gene Products

Symbol, full name Information P value
VC_1952
Chitinase
protein from Vibrio cholerae O1 biovar El Tor str. N16961 0.00010
VC_1952
chitinase
protein from Vibrio cholerae O1 biovar El Tor 0.00010

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  021511
        (311 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|Q9KQP6 - symbol:VC_1952 "Chitinase" species:243...   122  0.00010   2
TIGR_CMR|VC_1952 - symbol:VC_1952 "chitinase" species:686...   122  0.00010   2


>UNIPROTKB|Q9KQP6 [details] [associations]
            symbol:VC_1952 "Chitinase" species:243277 "Vibrio cholerae
            O1 biovar El Tor str. N16961" [GO:0004568 "chitinase activity"
            evidence=ISS] [GO:0006032 "chitin catabolic process" evidence=ISS]
            InterPro:IPR001223 InterPro:IPR001579 InterPro:IPR003610
            InterPro:IPR013781 Pfam:PF00704 Pfam:PF02839 PROSITE:PS01095
            SMART:SM00495 GO:GO:0005576 GO:GO:0043169 Gene3D:3.20.20.80
            InterPro:IPR017853 SUPFAM:SSF51445 GO:GO:0005975 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0030246 CAZy:GH18 GO:GO:0004568
            GO:GO:0006032 KO:K01183 CAZy:CBM5 Gene3D:2.10.10.20 SUPFAM:SSF51055
            PIR:C82135 RefSeq:NP_231586.1 ProteinModelPortal:Q9KQP6
            DNASU:2613456 GeneID:2613456 KEGG:vch:VC1952 PATRIC:20082944
            OMA:VTQVEFF ProtClustDB:CLSK874611 Uniprot:Q9KQP6
        Length = 846

 Score = 122 (48.0 bits), Expect = 0.00010, Sum P(2) = 0.00010
 Identities = 43/132 (32%), Positives = 67/132 (50%)

Query:    95 LSPSQVSA-IKNRHSNVKV-ALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN 152
             L P+Q    +K   +  KV  LSLGG   + G +  N    D   +N V+SLT++IKE+ 
Sbjct:   582 LDPAQFKQDMKALQAKGKVFVLSLGG---AEGTITLN---TDQDEANFVSSLTALIKEWG 635

Query:   153 LDGIDIDYEHFQ--ADPNTFAECIGRLIKTLKKN-GAISFASIAPYDDDQVQSH---YLA 206
              DG+D+D E        +     +GR +K ++KN G   F ++AP +   VQ     Y  
Sbjct:   636 FDGLDVDLESGSNLVHGSQIQARLGRALKQIEKNIGGDMFLTMAP-EHPYVQGGMVAYSG 694

Query:   207 LWKSYGDLIDYV 218
             +W +Y  +I+ V
Sbjct:   695 IWGAYIPVINEV 706

 Score = 47 (21.6 bits), Expect = 0.00010, Sum P(2) = 0.00010
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query:   270 TACSRLK---SQKQLHGIFVWSADDSKKNGFRYEK 301
             T C  +K   +     G+  WS +  K +GF + K
Sbjct:   799 TRCGTIKPAFAYPNYAGVMTWSINWDKHDGFNFSK 833


>TIGR_CMR|VC_1952 [details] [associations]
            symbol:VC_1952 "chitinase" species:686 "Vibrio cholerae O1
            biovar El Tor" [GO:0004568 "chitinase activity" evidence=ISS]
            [GO:0006032 "chitin catabolic process" evidence=ISS]
            InterPro:IPR001223 InterPro:IPR001579 InterPro:IPR003610
            InterPro:IPR013781 Pfam:PF00704 Pfam:PF02839 PROSITE:PS01095
            SMART:SM00495 GO:GO:0005576 GO:GO:0043169 Gene3D:3.20.20.80
            InterPro:IPR017853 SUPFAM:SSF51445 GO:GO:0005975 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0030246 CAZy:GH18 GO:GO:0004568
            GO:GO:0006032 KO:K01183 CAZy:CBM5 Gene3D:2.10.10.20 SUPFAM:SSF51055
            PIR:C82135 RefSeq:NP_231586.1 ProteinModelPortal:Q9KQP6
            DNASU:2613456 GeneID:2613456 KEGG:vch:VC1952 PATRIC:20082944
            OMA:VTQVEFF ProtClustDB:CLSK874611 Uniprot:Q9KQP6
        Length = 846

 Score = 122 (48.0 bits), Expect = 0.00010, Sum P(2) = 0.00010
 Identities = 43/132 (32%), Positives = 67/132 (50%)

Query:    95 LSPSQVSA-IKNRHSNVKV-ALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN 152
             L P+Q    +K   +  KV  LSLGG   + G +  N    D   +N V+SLT++IKE+ 
Sbjct:   582 LDPAQFKQDMKALQAKGKVFVLSLGG---AEGTITLN---TDQDEANFVSSLTALIKEWG 635

Query:   153 LDGIDIDYEHFQ--ADPNTFAECIGRLIKTLKKN-GAISFASIAPYDDDQVQSH---YLA 206
              DG+D+D E        +     +GR +K ++KN G   F ++AP +   VQ     Y  
Sbjct:   636 FDGLDVDLESGSNLVHGSQIQARLGRALKQIEKNIGGDMFLTMAP-EHPYVQGGMVAYSG 694

Query:   207 LWKSYGDLIDYV 218
             +W +Y  +I+ V
Sbjct:   695 IWGAYIPVINEV 706

 Score = 47 (21.6 bits), Expect = 0.00010, Sum P(2) = 0.00010
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query:   270 TACSRLK---SQKQLHGIFVWSADDSKKNGFRYEK 301
             T C  +K   +     G+  WS +  K +GF + K
Sbjct:   799 TRCGTIKPAFAYPNYAGVMTWSINWDKHDGFNFSK 833


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      311       311   0.00080  116 3  11 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  220 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.14u 0.11s 26.25t   Elapsed:  00:00:01
  Total cpu time:  26.14u 0.11s 26.25t   Elapsed:  00:00:01
  Start:  Mon May 20 20:53:23 2013   End:  Mon May 20 20:53:24 2013

Back to top