BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021511
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SIM|A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
pdb|3SIM|B Chain B, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
Length = 275
Score = 307 bits (786), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 160/276 (57%), Positives = 201/276 (72%), Gaps = 6/276 (2%)
Query: 38 LFREYIGAE-FNNVKFTDVPINSNV-EFHYILSFAIDYDTSSSPSPTNGKFNVFWDTGNL 95
LF EYIG F+ VKF+DVPIN ++ +F ++LSFA+DY SS + TNGKFNVFWD+ L
Sbjct: 2 LFVEYIGYPLFSGVKFSDVPINPHITKFQFVLSFAVDYTASSPHTSTNGKFNVFWDSSIL 61
Query: 96 SPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDG 155
P Q+SAIK+ H NV+VA+SLGG SV S V F +SVD+WVSNAV SLT II+ YNLDG
Sbjct: 62 GPDQISAIKSSHPNVRVAVSLGGASVGSNTVQFQAASVDSWVSNAVTSLTRIIQRYNLDG 121
Query: 156 IDIDYEHFQ-ADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGDL 214
IDIDYEHFQ D NTFAECIGRLI TLKKNG ISFASI+P+ V +YLAL+ Y +
Sbjct: 122 IDIDYEHFQNTDKNTFAECIGRLITTLKKNGVISFASISPF--PSVDEYYLALFNEYKNA 179
Query: 215 IDYVNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSF-ISDGSGGLAPGDGFFTACS 273
I+++N+QF AY TSV +F+ Y+ +S YKGG VL+SF GGL GFF A +
Sbjct: 180 INHINYQFKAYDSSTSVDKFLGYYNNAASKYKGGNVLISFSTGPHPGGLPVDKGFFDAAT 239
Query: 274 RLKSQKQLHGIFVWSADDSKKNGFRYEKQSQALLAA 309
LK++ +LHGI VW+AD SK + FRYE+++QA L +
Sbjct: 240 SLKNKGKLHGIAVWTADTSKSSDFRYEEEAQAFLVS 275
>pdb|1NAR|A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms
Resolution
Length = 290
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 159/296 (53%), Gaps = 34/296 (11%)
Query: 38 LFREYIGAEFNNVKFTDVP---INSN-VEFHYILSFAID--YDTSSSPSPTNGKFNVFWD 91
+FREYIG + N+ D P IN+ +EFHYIL FAI+ Y++ G F WD
Sbjct: 4 IFREYIGVKPNSTTLHDFPTEIINTETLEFHYILGFAIESYYESGKG----TGTFEESWD 59
Query: 92 TGNLSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEY 151
P +V +K RH VKV +S+GG V++ F+P+ + WVSNA SL II++Y
Sbjct: 60 VELFGPEKVKNLKRRHPEVKVVISIGGRGVNTP---FDPAEENVWVSNAKESLKLIIQKY 116
Query: 152 N------LDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGA--ISFASIAPYDDDQVQSH 203
+ +DGIDI YEH ++D FA +G+LI LKK+ I+ SIAP +++ SH
Sbjct: 117 SDDSGNLIDGIDIHYEHIRSD-EPFATLMGQLITELKKDDDLNINVVSIAPSENN--SSH 173
Query: 204 YLALWKSYGDLIDYVNFQFYAYAQGTSVSQ-FMDYFKTQSSNYKGGKVLVSFIS---DGS 259
Y L+ + D I++V++QF + S F++ FK+ +Y KVL F + D
Sbjct: 174 YQKLYNAKKDYINWVDYQFSNQQKPVSTDDAFVEIFKSLEKDYHPHKVLPGFSTDPLDTK 233
Query: 260 GGLAPGDGFFTACSRLKSQKQLHGIFVWSADDS---KKNG---FRYEKQSQALLAA 309
D F C+RL L G+F W+A+DS K++G F E Q LLAA
Sbjct: 234 HNKITRDIFIGGCTRLVQTFSLPGVFFWNANDSVIPKRDGDKPFIVELTLQQLLAA 289
>pdb|4AC1|X Chain X, The Structure Of A Fungal
Endo-Beta-N-Acetylglucosaminidase From Glycosyl
Hydrolase Family 18, At 1.3a Resolution
Length = 283
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 33/229 (14%)
Query: 81 PTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNA 140
P + F W+ I + + VKV +GG + S FN ++D+ S
Sbjct: 56 PDDPHFYTLWN---------ETITMKQAGVKVMGMVGGAAPGS----FNTQTLDSPDSAT 102
Query: 141 V----ASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGA----ISFASI 192
L I + L+G+D+D E + + I RLI L+ + I+ A +
Sbjct: 103 FEHYYGQLRDAIVNFQLEGMDLDVEQPMSQ-----QGIDRLIARLRADFGPDFLITLAPV 157
Query: 193 APYDDDQVQSH---YLALWKSYGDLIDYVNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGK 249
A +D Y AL ++ G+ ID+ N QFY+ S++ DY + ++ + K
Sbjct: 158 ASALEDSSNLSGFSYTALQQTQGNDIDWYNTQFYSGF--GSMADTSDYDRIVANGFAPAK 215
Query: 250 VLVSFIS--DGSGGLAPGDGFFTACSRLKSQKQLHGIFVWSADDSKKNG 296
V+ ++ +G+G + T S + Q+ G+ W +S G
Sbjct: 216 VVAGQLTTPEGAGWIPTSSLNNTIVSLVSEYGQIGGVMGWEYFNSLPGG 264
>pdb|3EBV|A Chain A, Crystal Structure Of Putative Chitinase A From
Streptomyces Coelicolor
Length = 302
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 23/132 (17%)
Query: 111 KVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTF 170
KV +S+GG+ G V N S+ T +N S+ S+ +EY DG+DID E+ +P
Sbjct: 77 KVIISVGGEK---GTVSVNSSASATNFAN---SVYSVXREYGFDGVDIDLEN-GLNPTYX 129
Query: 171 AECIGRLIKTLKKNGAISFASIAP--YDDDQVQSHYLALWKSYGDLIDYVNFQFY----- 223
+ + L K G + AP D Q Y + D++ VN Q+Y
Sbjct: 130 TQALRALS---AKAGPDXILTXAPQTIDXQSTQGGYFQTALNVKDILTVVNXQYYNSGTX 186
Query: 224 ------AYAQGT 229
YAQGT
Sbjct: 187 LGCDGKVYAQGT 198
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 19/149 (12%)
Query: 91 DTGN---LSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPS-SVDTWVSNAVASLTS 146
DTGN Q+ +K ++ N+KV LS+GG + S F P+ S D N +
Sbjct: 106 DTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTYSPN---FAPAASTDAGRKNFAKTAVK 162
Query: 147 IIKEYNLDGIDIDYEHFQAD--PNTFAECIGRLIKTLKKNGAIS-------FASIAPYDD 197
++++ DG+DID+E+ + D N F + + L A + +P
Sbjct: 163 LLQDLGFDGLDIDWEYPENDQQANDFVLLLKEVRTALDSYSAANAGGQHFLLTVASPAGP 222
Query: 198 DQVQSHYLALWKSYGDLIDYVNFQFYAYA 226
D+++ +L K +D+ N Y YA
Sbjct: 223 DKIKVLHL---KDMDQQLDFWNLMAYDYA 248
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 16/138 (11%)
Query: 99 QVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPS-SVDTWVSNAVASLTSIIKEYNLDGID 157
Q+ +K ++ N+KV LS+GG + S F P+ S D N + ++++ DG+D
Sbjct: 79 QLYLLKKQNRNLKVLLSIGGWTYSPN---FAPAASTDAGRKNFAKTAVKLLQDLGFDGLD 135
Query: 158 IDYEHFQAD--PNTFAECIGRLIKTLKKNGAIS-------FASIAPYDDDQVQSHYLALW 208
ID+E+ + D N F + + L A + +P D+++ +L
Sbjct: 136 IDWEYPENDQQANDFVLLLREVRTALDSYSAANAGGQHFLLTVASPAGPDKIKVLHL--- 192
Query: 209 KSYGDLIDYVNFQFYAYA 226
K +D+ N Y YA
Sbjct: 193 KDMDQQLDFWNLMAYDYA 210
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 24/142 (16%)
Query: 99 QVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSI--IKEYNLDGI 156
Q+ +K + ++K+ LS+GG + S+ P++ T + A + T++ +K++ DGI
Sbjct: 94 QLYKLKKANRSLKIMLSIGGWTWSTNF----PAAASTEATRATFAKTAVEFMKDWGFDGI 149
Query: 157 DIDYEH--FQADPNTFAECIGRLIKTLKKNGA---------ISFASIAPYDDDQVQSHYL 205
D+D+E+ + D N + R+ + L A +S A+ A SHY
Sbjct: 150 DVDWEYPASETDANNMVLLLQRVRQELDSYSATYANGYHFQLSIAAPAG------PSHYN 203
Query: 206 AL-WKSYGDLIDYVNFQFYAYA 226
L G ++D +N Y YA
Sbjct: 204 VLKLAQLGSVLDNINLMAYDYA 225
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 98 SQVSAIKNRHSNVKVALSLGG-----DSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN 152
++++A+K + ++++ S+GG D S Y N + S I+K+Y
Sbjct: 76 NRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYG 135
Query: 153 LDGIDIDYEHFQA 165
DG+DID+E+ QA
Sbjct: 136 FDGVDIDWEYPQA 148
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 38/152 (25%)
Query: 20 VLFPC-NVSSAKAAPESSNLFREYIGAEFNNVKFTDVPINSNVEFHYILSFAIDYDTSSS 78
V FP N++ AKA + ++ F+ + INSN+E +D +++
Sbjct: 29 VPFPVSNITPAKAK-------------QLTHINFSFLDINSNLE--------CAWDPATN 67
Query: 79 PSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALSLGG-----DSVSSGKVYFNPSSV 133
+ N +++A+K + ++++ S+GG D S Y N
Sbjct: 68 DAKARDVVN-----------RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKT 116
Query: 134 DTWVSNAVASLTSIIKEYNLDGIDIDYEHFQA 165
+ S I+K+Y DG+DID+E+ QA
Sbjct: 117 PASRAKFAQSCVRIMKDYGFDGVDIDWEYPQA 148
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVS----------NAVASLTSI 147
S+V+++K ++ ++KV LS+GGD +P + ++ + S +
Sbjct: 65 SEVTSLKRKYPHLKVLLSVGGDHD------IDPDHPNKYIDLLEGEKVRQIGFIRSAYEL 118
Query: 148 IKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKK 183
+K Y DG+D+ Y+ + P +G K++KK
Sbjct: 119 VKTYGFDGLDLAYQFPKNKPRKVHGDLGLAWKSIKK 154
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 98 SQVSAIKNRHSNVKVALSLGG-----DSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN 152
++++A+K + ++++ S+GG D S Y N + S I+K+Y
Sbjct: 75 NRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYG 134
Query: 153 LDGIDIDYEHFQA 165
DG+DID+E+ QA
Sbjct: 135 FDGVDIDWEYPQA 147
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 24/145 (16%)
Query: 99 QVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAV--ASLTSIIKEYNLDGI 156
++ A++ ++ ++KV LS+GG G F+ ++ T S AV S II++Y LDGI
Sbjct: 97 KLPALRKQNPDLKVLLSVGG----WGARGFSGAAA-TAESRAVFIRSAQKIIQQYGLDGI 151
Query: 157 DIDYE-----------HFQADPNTFAECIGRLIKTLKKN-GAISFASIAPYDDDQVQSHY 204
D+D+E AD + F L+K+L++ G +IA + + +
Sbjct: 152 DLDWEFPVNGAWGLVASQPADRDNFTA----LLKSLREAVGEQKLVTIAVGANAESPKSW 207
Query: 205 LALWKSYGDLIDYVNFQFYAYAQGT 229
+ + K+ +++Y+N Y A GT
Sbjct: 208 VDV-KAVAPVLNYINLXTYDXAYGT 231
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 38/152 (25%)
Query: 20 VLFPC-NVSSAKAAPESSNLFREYIGAEFNNVKFTDVPINSNVEFHYILSFAIDYDTSSS 78
V FP N++ AKA + ++ F+ + INSN+E +D +++
Sbjct: 29 VPFPVSNITPAKAK-------------QLTHINFSFLDINSNLE--------CAWDPATN 67
Query: 79 PSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALSLGG-----DSVSSGKVYFNPSSV 133
+ N +++A+K + ++++ S+GG D S Y N
Sbjct: 68 DAKARDVVN-----------RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKT 116
Query: 134 DTWVSNAVASLTSIIKEYNLDGIDIDYEHFQA 165
+ S I+K+Y DG+DID+++ QA
Sbjct: 117 PASRAKFAQSCVRIMKDYGFDGVDIDWQYPQA 148
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 98 SQVSAIKNRHSNVKVALSLGG-----DSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN 152
++++A+K + ++++ S+GG D S Y N + S I+K+Y
Sbjct: 76 NRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYG 135
Query: 153 LDGIDIDYEHFQA 165
DG+DI++E+ QA
Sbjct: 136 FDGVDINWEYPQA 148
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 98 SQVSAIKNRHSNVKVALSLGG-----DSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN 152
++++A+K + ++++ S+GG D S Y N + S I+K+Y
Sbjct: 76 NRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYG 135
Query: 153 LDGIDIDYEHFQA 165
DG+DI++E+ QA
Sbjct: 136 FDGVDINWEYPQA 148
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 98 SQVSAIKNRHSNVKVALSLGG-----DSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN 152
++++A+K + ++++ S+GG D S Y N + S I+K+Y
Sbjct: 76 NRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYG 135
Query: 153 LDGIDIDYEHFQA 165
DG++ID+E+ QA
Sbjct: 136 FDGVNIDWEYPQA 148
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 99 QVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDI 158
Q+ +K + N+K LS+GG + S + P+S + + ++K+ DGIDI
Sbjct: 76 QMYLLKKNNRNLKTLLSIGGWTYSPN--FKTPASTEEGRKKFADTSLKLMKDLGFDGIDI 133
Query: 159 DYEH 162
D+E+
Sbjct: 134 DWEY 137
>pdb|2GSJ|A Chain A, Cdna Cloning And 1.75a Crystal Structure Determination Of
Ppl2, A Novel Chimerolectin From Parkia Platycephala
Seeds Exhibiting Endochitinolytic Activity
Length = 271
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 100 VSAIKNRHSNVKVALSLGGDSVS-SGKVYFNPSSVDTWVSN---AVASLTSIIKEYNLDG 155
+ A + R +KV LS+GG + S S + SV ++ N S + + + LDG
Sbjct: 64 IRACQRR--GIKVMLSIGGGAGSYSLSSVQDARSVADYIWNNFLGGRSSSRPLGDAVLDG 121
Query: 156 IDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGDLI 215
+D D EH A + + + R + + G F S AP QS AL S G L
Sbjct: 122 VDFDIEHGGA----YYDALARRLSEHNRGGKKVFLSAAPQCPFPDQSLNKAL--STG-LF 174
Query: 216 DYVNFQFYAYAQ 227
DYV QFY Q
Sbjct: 175 DYVWVQFYNNPQ 186
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 92 TGNLSPSQ-----VSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTS 146
T N++P + V ++H NVK+ +SL +S N + + +
Sbjct: 44 TLNINPVRKRIESVRETAHKH-NVKILISLAKNSPGEFTTAINDPKAR---KELIQQIIA 99
Query: 147 IIKEYNLDGIDIDYEHF 163
KEY LDG DIDYE +
Sbjct: 100 FTKEYKLDGFDIDYEEY 116
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 103 IKNRHSNVKVALSLGG---DSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDID 159
++ R+ +VK LS+GG D + + NP+S +++ +++ + + Y G+D+D
Sbjct: 60 VQRRNPSVKTLLSIGGGIADKTAYASMASNPTSRKSFIDSSI----RVARSYGFHGLDLD 115
Query: 160 YEHFQADPNTFAECI--GRLIKTLK 182
+E+ P++ E G L++ +
Sbjct: 116 WEY----PSSATEMTNFGTLLREWR 136
>pdb|2Y8V|A Chain A, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|B Chain B, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|C Chain C, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|D Chain D, Structure Of Chitinase, Chic, From Aspergillus Fumigatus
Length = 290
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 37/150 (24%)
Query: 58 NSNVEFHYILSFAIDYD----TSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVA 113
N+ V I +F ++ D T + P + +N W ++V +K S VKV
Sbjct: 39 NTGVTHIIIAAFHLNEDPGHITLNDDPPDHEMYNPLW-------AEVPVLKR--SGVKVM 89
Query: 114 LSLGGDSVSSGKV----------YFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHF 163
LGG + S + Y+ P L ++++ + LDG+D+D E
Sbjct: 90 GMLGGAAQGSYRCLDGDQEKFERYYQP-------------LLAMVRRHQLDGLDLDVEEE 136
Query: 164 QADPNTFAECIGRLIKTLKKNGAISFASIA 193
+ P I RL L + I+ A +A
Sbjct: 137 MSLPGII-RLIDRLKLDLGDDFIITLAPVA 165
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 101 SAIKNRHSNVKVALSLGGDSVSSGK---VYFNPSSVDTWVSNAVASLTSIIKEYNLDGID 157
+ +KN++S +K L++GG + + + P + T+++ S+ +++Y DG+D
Sbjct: 64 NGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFIT----SVIKFLRQYEFDGLD 119
Query: 158 IDYEH 162
D+E+
Sbjct: 120 FDWEY 124
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 101 SAIKNRHSNVKVALSLGGDSVSSGK---VYFNPSSVDTWVSNAVASLTSIIKEYNLDGID 157
+ +KN++S +K L++GG + + + P + T+++ S+ +++Y DG+D
Sbjct: 60 NGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFIT----SVIKFLRQYEFDGLD 115
Query: 158 IDYEH 162
D+E+
Sbjct: 116 FDWEY 120
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 11/78 (14%)
Query: 90 WD---TGNLSPSQVSAIKNRHSNVKVALSLGGDSVSS--GKVYFNPSSVDTWVSNAVASL 144
WD GN++ Q++ +K + N+K +S+GG + S+ V ++ + + ++AV
Sbjct: 102 WDQPIAGNIN--QLNKLKQTNPNLKTIISVGGWTWSNRFSDVAATAATREVFANSAV--- 156
Query: 145 TSIIKEYNLDGIDIDYEH 162
+++YN DG+D+D+E+
Sbjct: 157 -DFLRKYNFDGVDLDWEY 173
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 100 VSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNA------VASLTSIIKEYNL 153
++ +K++++ +K L++GG F P+ VS + S+ +++YN
Sbjct: 59 LNGLKDKNTELKTLLAIGG-------WKFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNF 111
Query: 154 DGIDIDYEH--FQADPNTFAECIGRLIKTLKK 183
DG+++D+++ + P L+K ++K
Sbjct: 112 DGLNLDWQYPGSRGSPPKDKHLFSVLVKEMRK 143
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 99 QVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDI 158
Q+ +K + N+K LS+GG + S + P+S + + ++K+ DGIDI
Sbjct: 76 QMYLLKKNNRNLKTLLSIGGWTYSPN--FKTPASTEEGRKKFADTSLKLMKDLGFDGIDI 133
Query: 159 DYEH 162
D+++
Sbjct: 134 DWQY 137
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 99 QVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDI 158
Q+ +K + N+K LS+GG + S + P+S + + ++K+ DGIDI
Sbjct: 76 QMYLLKKNNRNLKTLLSIGGWTYSPN--FKTPASTEEGRKKFADTSLKLMKDLGFDGIDI 133
Query: 159 DYEH 162
++E+
Sbjct: 134 NWEY 137
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYF-NPSSVDTWVSNAVASLTSIIKEYNL-DG 155
+ + A+K R+ ++K+ S+GG ++S F + + DT+ VAS+ +K + DG
Sbjct: 233 AMLMALKQRNPDLKIIPSIGGGTLSDPFYDFVDKKNRDTF----VASVKKFLKTWKFYDG 288
Query: 156 IDIDYE 161
+DID+E
Sbjct: 289 VDIDWE 294
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 100 VSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNA--VASLTSIIKEYNLDGID 157
++++K ++ +K+ LS+GG S F+P VD+ S + S+ ++ +N DG+D
Sbjct: 60 INSLKTKNPKLKILLSIGGYLFGSKG--FHPM-VDSSTSRLEFINSIILFLRNHNFDGLD 116
Query: 158 IDYEHFQADPNT-FAECIGRLIKTLKKN 184
+ + + NT F I L + +K+
Sbjct: 117 VSWIYPDQKENTHFTVLIHELAEAFQKD 144
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 100 VSAIKNRHSNVKVALSLGGDSVSS---GKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGI 156
++ +KNR+ N+K LS+GG + S K+ N S T++ S+ ++ + DG+
Sbjct: 59 LNTLKNRNPNLKTLLSVGGWNFGSQRFSKIASNTQSRRTFIK----SVPPFLRTHGFDGL 114
Query: 157 DI--------DYEHF 163
D+ D +HF
Sbjct: 115 DLAWLYPGRRDKQHF 129
>pdb|1EOK|A Chain A, Crystal Structure Of Endo-Beta-N-Acetylglucosaminidase F3
pdb|1EOM|A Chain A, Crystal Structure Of The Complex Of
Endo-beta-n-acetylglucosaminidase F3 With A Biantennary
Complex Octasaccharide
Length = 290
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 51 KFTDVPINSNVEFHYILSFAIDYDTSSSPSPTN--GKFNVFWDTGNLSPSQVSAIKNRHS 108
K D+P ++ + L + DT+ P T G F + D +Q+ ++++R
Sbjct: 25 KLKDIPDKVDMVILFGLKYWSLQDTTKLPGGTGMMGSFKSYKDL----DTQIRSLQSR-- 78
Query: 109 NVKVALSLGGD-SVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADP 167
+KV ++ D S S K P + + A + +I ++ LDGI +D EH A P
Sbjct: 79 GIKVLQNIDDDVSWQSSK----PGGFASAAAYGDAIKSIVIDKWKLDGISLDIEHSGAKP 134
Query: 168 N 168
N
Sbjct: 135 N 135
>pdb|1YGR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGU|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
pdb|1YGU|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
Length = 610
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 45 AEFNNVKFTDVPINSNVEFHYILSFAIDYDTSSSPSPTNGKFNVF-----WDTGNLSPSQ 99
E+N T+V ++ E H L D S PSP +F W T ++ +
Sbjct: 287 VEYNQFGETEVNLS---ELHPYLHNXKKRDPPSEPSPLEAEFQRLPSYRSWRTQHIGNQE 343
Query: 100 VSAIKNRHSNV 110
+ KNR+SNV
Sbjct: 344 ENKSKNRNSNV 354
>pdb|1HVQ|A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein
With Chitinase And Lysozyme Activity, And Its Complex
With An Inhibitor
pdb|1LLO|A Chain A, Hevamine A (A Plant EndochitinaseLYSOZYME) COMPLEXED WITH
Allosamidin
pdb|2HVM|A Chain A, Hevamine A At 1.8 Angstrom Resolution
Length = 273
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 60/154 (38%), Gaps = 16/154 (10%)
Query: 153 LDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYG 212
LDGID D EH + + + R + K G + + AP YL + G
Sbjct: 119 LDGIDFDIEH---GSTLYWDDLARYLSAYSKQGKKVYLTAAP--QCPFPDRYLGTALNTG 173
Query: 213 DLIDYVNFQFY-----AYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFISD----GSGGLA 263
L DYV QFY Y+ G + + + +S GK+ + + GSG +
Sbjct: 174 -LFDYVWVQFYNNPPCQYSSGNINNIINSWNRWTTS-INAGKIFLGLPAAPEAAGSGYVP 231
Query: 264 PGDGFFTACSRLKSQKQLHGIFVWSADDSKKNGF 297
P +K + G+ +WS KNG+
Sbjct: 232 PDVLISRILPEIKKSPKYGGVMLWSKFYDDKNGY 265
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 99 QVSAIKNRHSNVKVALSLGGDSVSSGK---VYFNPSSVDTWVSNAVASLTSIIKEYNLDG 155
+ + +K + +K L++GG + + K + ++ T+V++A+ +++Y+ DG
Sbjct: 58 EFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAI----RFLRKYSFDG 113
Query: 156 IDIDYEH--FQADPNTFAECIGRLIKTL 181
+D+D+E+ Q P E L++ L
Sbjct: 114 LDLDWEYPGSQGSPAVDKERFTTLVQDL 141
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 99 QVSAIKNRHSNVKVALSLGGDSVSSGK---VYFNPSSVDTWVSNAVASLTSIIKEYNLDG 155
+ + +K + +K L++GG + + K + ++ T+V++A+ +++Y+ DG
Sbjct: 58 EFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAI----RFLRKYSFDG 113
Query: 156 IDIDYEH--FQADPNTFAECIGRLIKTL 181
+D+D+E+ Q P E L++ L
Sbjct: 114 LDLDWEYPGSQGSPAVDKERFTTLVQDL 141
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 99 QVSAIKNRHSNVKVALSLGGDSVSSGK---VYFNPSSVDTWVSNAVASLTSIIKEYNLDG 155
+ + +K + +K L++GG + + K + ++ T+V++A+ +++Y+ DG
Sbjct: 58 EFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAI----RFLRKYSFDG 113
Query: 156 IDIDYEH--FQADPNTFAECIGRLIKTL 181
+D+D+E+ Q P E L++ L
Sbjct: 114 LDLDWEYPGSQGSPAVDKERFTTLVQDL 141
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 99 QVSAIKNRHSNVKVALSLGGDSVSSGK---VYFNPSSVDTWVSNAVASLTSIIKEYNLDG 155
+ + +K + +K L++GG + + K + ++ T+V++A+ +++Y+ DG
Sbjct: 58 EFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAI----RFLRKYSFDG 113
Query: 156 IDIDYEH--FQADPNTFAECIGRLIKTL 181
+D+D+E+ Q P E L++ L
Sbjct: 114 LDLDWEYPGSQGSPAVDKERFTTLVQDL 141
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYF-NPSSVDTWVSNAVASLTSIIKEYNL-DG 155
+ + A+K R+ ++K+ S+GG ++S F + + DT+ VAS+ +K + DG
Sbjct: 233 AMLMALKQRNPDLKIIPSIGGWTLSDPFYDFVDKKNRDTF----VASVKKFLKTWKFYDG 288
Query: 156 IDIDYE 161
+DID+E
Sbjct: 289 VDIDWE 294
>pdb|1POX|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POX|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 1 MAMNQIVSKLFISLVILQAVLFPCNVSSAKAAPESSNLFREYIGAEFNNVKFTDV 55
M M +V+++ L ++ V C K E +N ++IG EFN++ F+ +
Sbjct: 444 MTMQDLVTQVQYHLPVINVVFTNCQYGFIKDEQEDTNQ-NDFIGVEFNDIDFSKI 497
>pdb|1XAS|A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The
Streptomyces Lividans Xylanase A, A Member Of The F
Family Of Beta-1,4-D-Glycanses
Length = 299
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 88 VFWDTGNLSPSQVSAIKNRHSN--------VKVALSLGGDSVSSGKVYFNPSSVDTWVSN 139
V WD N + + S+ R SN ++VA + S K+ +N +V+ W
Sbjct: 121 VQWDVVNEAFADGSSGARRDSNLQRSGNDWIEVAFRTARAADPSAKLCYNDYNVENWTWA 180
Query: 140 AVASLTSIIKEYNLDGIDIDYEHFQADPNT 169
++ ++++++ G+ ID FQ+ N+
Sbjct: 181 KTQAMYNMVRDFKQRGVPIDCVGFQSHFNS 210
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 99 QVSAIKNRHSNVKVALSLGGDSVSSGK---VYFNPSSVDTWVSNAVASLTSIIKEYNLDG 155
+ + +K + +K L++GG + + K + ++ T+V++A+ +++Y+ DG
Sbjct: 58 EFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAI----RFLRKYSFDG 113
Query: 156 IDIDYEH--FQADPNTFAECIGRLIKTL 181
+D+D+E+ Q P E L++ L
Sbjct: 114 LDLDWEYPGSQGSPAVDKERFTTLVQDL 141
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN-LDGI 156
Q+ A+K H ++K+ S+GG ++S +F V V S+ ++ + DG+
Sbjct: 231 GQLMALKQAHPDLKILPSIGGWTLSD-PFFFMGDKVKR--DRFVGSVKEFLQTWKFFDGV 287
Query: 157 DIDYE 161
DID+E
Sbjct: 288 DIDWE 292
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN-LDGI 156
Q+ A+K H ++K+ S+GG ++S +F V V S+ ++ + DG+
Sbjct: 231 GQLMALKQAHPDLKILPSIGGWTLSD-PFFFMGDKVKR--DRFVGSVKEFLQTWKFFDGV 287
Query: 157 DIDYE 161
DID+E
Sbjct: 288 DIDWE 292
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN-LDGI 156
Q+ A+K H ++K+ S+GG ++S +F V V S+ ++ + DG+
Sbjct: 231 GQLMALKQAHPDLKILPSIGGWTLSD-PFFFMGDKVKR--DRFVGSVKEFLQTWKFFDGV 287
Query: 157 DIDYE 161
DID+E
Sbjct: 288 DIDWE 292
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN-LDGI 156
Q+ A+K H ++K+ S+GG ++S +F V V S+ ++ + DG+
Sbjct: 231 GQLMALKQAHPDLKILPSIGGWTLSD-PFFFMGDKVKR--DRFVGSVKEFLQTWKFFDGV 287
Query: 157 DIDYE 161
DID+E
Sbjct: 288 DIDWE 292
>pdb|1E0V|A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme
Intermediate At 1.7 A
Length = 313
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 88 VFWDTGNLSPSQVSAIKNRHSN--------VKVALSLGGDSVSSGKVYFNPSSVDTWVSN 139
V WD N + + S+ R SN ++VA + S K+ +N +V+ W
Sbjct: 121 VQWDVVNEAFADGSSGARRDSNLQRSGNDWIEVAFRTARAADPSAKLCYNDYNVENWTWA 180
Query: 140 AVASLTSIIKEYNLDGIDIDYEHFQADPNT 169
++ ++++++ G+ ID FQ+ N+
Sbjct: 181 KTQAMYNMVRDFKQRGVPIDCVGFQSHFNS 210
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN-LDGI 156
Q+ A+K H ++K+ S+GG ++S +F V V S+ ++ + DG+
Sbjct: 231 GQLMALKQAHPDLKILPSIGGWTLSD-PFFFMGDKVKR--DRFVGSVKEFLQTWKFFDGV 287
Query: 157 DIDYE 161
DID+E
Sbjct: 288 DIDWE 292
>pdb|1E0W|A Chain A, Xylanase 10a From Sreptomyces Lividans. Native Structure
At 1.2 Angstrom Resolution
pdb|1E0X|A Chain A, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1E0X|B Chain B, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1OD8|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Isofagomine Lactam
pdb|1V0K|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Deoxynojirimycin At Ph 5.8
pdb|1V0L|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-isofagomine At Ph 5.8
pdb|1V0M|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-deoxynojirimycin At Ph 7.5
pdb|1V0N|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Isofagomine At Ph 7.5
Length = 313
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 88 VFWDTGNLSPSQVSAIKNRHSN--------VKVALSLGGDSVSSGKVYFNPSSVDTWVSN 139
V WD N + + S+ R SN ++VA + S K+ +N +V+ W
Sbjct: 121 VQWDVVNEAFADGSSGARRDSNLQRSGNDWIEVAFRTARAADPSAKLCYNDYNVENWTWA 180
Query: 140 AVASLTSIIKEYNLDGIDIDYEHFQADPNT 169
++ ++++++ G+ ID FQ+ N+
Sbjct: 181 KTQAMYNMVRDFKQRGVPIDCVGFQSHFNS 210
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN-LDGI 156
Q+ A+K H ++K+ S+GG ++S +F V V S+ ++ + DG+
Sbjct: 231 GQLMALKQAHPDLKILPSIGGWTLSD-PFFFMGDKVKR--DRFVGSVKEFLQTWKFFDGV 287
Query: 157 DIDYE 161
DID+E
Sbjct: 288 DIDWE 292
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN-LDGI 156
Q+ A+K H ++K+ S+GG ++S +F V V S+ ++ + DG+
Sbjct: 254 GQLMALKQAHPDLKILPSIGGWTLSD-PFFFMGDKVKR--DRFVGSVKEFLQTWKFFDGV 310
Query: 157 DIDYE 161
DID+E
Sbjct: 311 DIDWE 315
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 100 VSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSV--DTW 136
V I NR +N+K LGG ++ +G + P V D+W
Sbjct: 88 VPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSW 126
>pdb|3N11|A Chain A, Crystal Stricture Of Wild-Type Chitinase From Bacillus
Cereus Nctu2
pdb|3N12|A Chain A, Crystal Stricture Of Chitinase In Complex With Zinc Atoms
From Bacillus Cereus Nctu2
Length = 333
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGID 157
S +S +K++ KV LS+GG +G V ++ N++ SL I +Y DGID
Sbjct: 63 SDISYLKSKGK--KVVLSIGG---QNGVVLLPDNAAKDRFINSIQSL---IDKYGFDGID 114
Query: 158 IDYE 161
ID E
Sbjct: 115 IDLE 118
>pdb|3ERP|A Chain A, Structure Of Idp01002, A Putative Oxidoreductase From And
Essential Gene Of Salmonella Typhimurium
pdb|3ERP|B Chain B, Structure Of Idp01002, A Putative Oxidoreductase From And
Essential Gene Of Salmonella Typhimurium
Length = 353
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 141 VASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDD 198
+ASL +K L+ +DI Y H + DP T + + + L ++G + I+ Y D
Sbjct: 138 IASLDQSLKRMGLEYVDIFYHH-RPDPETPLKETMKALDHLVRHGKALYVGISNYPAD 194
>pdb|4AUB|A Chain A, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|B Chain B, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|C Chain C, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|D Chain D, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|E Chain E, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|F Chain F, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|G Chain G, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|H Chain H, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
Length = 366
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 141 VASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQV 200
+ASL +K L+ +DI Y H + D NT E + ++G + I+ Y ++
Sbjct: 137 LASLDQSLKRMGLEYVDIFYSH-RVDENTPMEETASALAHAVQSGKALYVGISSYSPERT 195
Query: 201 QS--HYLALWK 209
Q L WK
Sbjct: 196 QKMVELLREWK 206
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 100 VSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDID 159
++ +KNR+ N+K LS+GG + S + S + + S+ ++ + DG+D+
Sbjct: 59 LNTLKNRNPNLKTLLSVGGWNYGSQRFSKIASKTQS-RRTFIKSVPPFLRTHGFDGLDLA 117
Query: 160 Y 160
+
Sbjct: 118 W 118
>pdb|3N6Q|A Chain A, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|B Chain B, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|C Chain C, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|D Chain D, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|E Chain E, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|F Chain F, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|G Chain G, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|H Chain H, Crystal Structure Of Yghz From E. Coli
pdb|4AST|A Chain A, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|B Chain B, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|C Chain C, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|D Chain D, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|E Chain E, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|F Chain F, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|G Chain G, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|H Chain H, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
Length = 346
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 141 VASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQV 200
+ASL +K L+ +DI Y H + D NT E + ++G + I+ Y ++
Sbjct: 117 LASLDQSLKRMGLEYVDIFYSH-RVDENTPMEETASALAHAVQSGKALYVGISSYSPERT 175
Query: 201 QS--HYLALWK 209
Q L WK
Sbjct: 176 QKMVELLREWK 186
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 100 VSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDID 159
++ +KNR+ N+K LS+GG + S + S + + S+ ++ + DG+D+
Sbjct: 59 LNTLKNRNPNLKTLLSVGGWNFGSERFSKIASKTQS-RRTFIKSVPPFLRTHGFDGLDLA 117
Query: 160 Y 160
+
Sbjct: 118 W 118
>pdb|2EZ4|A Chain A, Pyruvate Oxidase Variant F479w
pdb|2EZ4|B Chain B, Pyruvate Oxidase Variant F479w
pdb|2EZ8|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ8|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ9|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZ9|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZT|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZT|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZU|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
pdb|2EZU|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
Length = 603
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 1 MAMNQIVSKLFISLVILQAVLFPCNVSSAKAAPESSNLFREYIGAEFNNVKFTDV 55
M M + +++ L ++ V C K E +N ++IG EFN++ F+ +
Sbjct: 452 MTMQDLATQVQYHLPVINVVFTNCQYGWIKDEQEDTNQ-NDFIGVEFNDIDFSKI 505
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 100 VSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDID 159
++ +KNR+ N+K LS+GG + S + S + + S+ ++ + DG+D+
Sbjct: 59 LNTLKNRNPNLKTLLSVGGWNFGSERFSKIASKTQS-RRTFIKSVPPFLRTHGFDGLDLA 117
Query: 160 Y 160
+
Sbjct: 118 W 118
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN-LDGI 156
Q+ A+K H ++K+ S+GG ++S +F V V S+ ++ + DG+
Sbjct: 231 GQLMALKQAHPDLKILPSIGGWTLSD-PFFFMGDKVKR--DRFVGSVKEFLQTWKFFDGV 287
Query: 157 DIDYE 161
DID++
Sbjct: 288 DIDWQ 292
>pdb|4FEE|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEE|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEG|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
pdb|4FEG|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
Length = 603
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 1 MAMNQIVSKLFISLVILQAVLFPCNVSSAKAAPESSNLFREYIGAEFNNVKFTDV 55
M M + +++ L ++ V C K E +N ++IG EFN++ F+ +
Sbjct: 452 MTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQ-NDFIGVEFNDIDFSKI 505
>pdb|1Y9D|A Chain A, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|B Chain B, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|C Chain C, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|D Chain D, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
Length = 603
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 1 MAMNQIVSKLFISLVILQAVLFPCNVSSAKAAPESSNLFREYIGAEFNNVKFTDV 55
M M + +++ L ++ V C K E +N ++IG EFN++ F+ +
Sbjct: 452 MTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQ-NDFIGVEFNDIDFSKI 505
>pdb|1POW|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POW|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 1 MAMNQIVSKLFISLVILQAVLFPCNVSSAKAAPESSNLFREYIGAEFNNVKFTDV 55
M M + +++ L ++ V C K E +N ++IG EFN++ F+ +
Sbjct: 444 MTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQ-NDFIGVEFNDIDFSKI 497
>pdb|3N17|A Chain A, Crystal Stricture Of E145qY227F CHITINASE IN COMPLEX WITH
NAG FROM Bacillus Cereus Nctu2
Length = 333
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGID 157
S +S +K++ KV LS+GG +G V ++ N++ SL I +Y DGID
Sbjct: 63 SDISYLKSKGK--KVVLSIGG---QNGVVLLPDNAAKDRFINSIQSL---IDKYGFDGID 114
Query: 158 IDYE 161
ID +
Sbjct: 115 IDLQ 118
>pdb|3N15|A Chain A, Crystal Stricture Of E145q Chitinase In Complex With Nag
From Bacillus Cereus Nctu2
Length = 333
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGID 157
S +S +K++ KV LS+GG +G V ++ N++ SL I +Y DGID
Sbjct: 63 SDISYLKSKGK--KVVLSIGG---QNGVVLLPDNAAKDRFINSIQSL---IDKYGFDGID 114
Query: 158 IDYE 161
ID +
Sbjct: 115 IDLQ 118
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYF-NPSSVDTWVSNAVASLTSIIKEYNL-DG 155
+ + A+K R+ ++K+ S+GG ++S F + + DT+ VAS+ +K + DG
Sbjct: 233 AMLMALKQRNPDLKIIPSIGGWTLSDPFYDFVDKKNRDTF----VASVKKFLKTWKFYDG 288
Query: 156 IDIDY 160
+DID+
Sbjct: 289 VDIDW 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,445,125
Number of Sequences: 62578
Number of extensions: 406136
Number of successful extensions: 1124
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 1074
Number of HSP's gapped (non-prelim): 98
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)