Query 021511
Match_columns 311
No_of_seqs 253 out of 2338
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:34:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06544 GH18_narbonin Narbonin 100.0 2E-51 4.4E-56 357.9 26.3 250 40-292 3-253 (253)
2 cd02879 GH18_plant_chitinase_c 100.0 8.2E-42 1.8E-46 306.8 21.8 244 38-296 5-297 (299)
3 cd06546 GH18_CTS3_chitinase GH 100.0 2.5E-41 5.3E-46 296.3 24.1 239 37-291 1-255 (256)
4 cd02871 GH18_chitinase_D-like 100.0 5.7E-40 1.2E-44 296.6 21.9 260 37-305 2-311 (312)
5 cd06548 GH18_chitinase The GH1 100.0 6.2E-40 1.3E-44 298.1 22.1 249 38-292 1-322 (322)
6 cd02873 GH18_IDGF The IDGF's ( 100.0 1.8E-39 3.9E-44 303.2 22.1 213 37-258 1-275 (413)
7 COG3325 ChiA Chitinase [Carboh 100.0 8.1E-39 1.7E-43 286.5 21.5 221 34-258 36-314 (441)
8 cd06545 GH18_3CO4_chitinase Th 100.0 1.4E-38 3E-43 279.9 21.2 237 38-299 1-249 (253)
9 cd02872 GH18_chitolectin_chito 100.0 1.5E-38 3.3E-43 293.9 20.1 210 38-258 1-244 (362)
10 cd02878 GH18_zymocin_alpha Zym 100.0 2.5E-37 5.3E-42 283.1 20.0 201 37-258 1-242 (345)
11 smart00636 Glyco_18 Glycosyl h 100.0 9E-35 1.9E-39 266.1 23.4 209 37-258 1-237 (334)
12 KOG2806 Chitinase [Carbohydrat 100.0 6.4E-34 1.4E-38 266.6 21.0 213 34-258 50-298 (432)
13 cd02877 GH18_hevamine_XipI_cla 100.0 3.8E-33 8.3E-38 246.3 21.0 247 39-304 3-279 (280)
14 cd02876 GH18_SI-CLP Stabilin-1 100.0 8.5E-33 1.9E-37 251.0 18.6 207 37-258 4-230 (318)
15 cd00598 GH18_chitinase-like Th 100.0 5.1E-32 1.1E-36 231.9 19.0 205 38-292 1-210 (210)
16 PF00704 Glyco_hydro_18: Glyco 100.0 6E-33 1.3E-37 254.8 13.9 213 37-258 2-245 (343)
17 cd02874 GH18_CFLE_spore_hydrol 100.0 8.5E-29 1.8E-33 224.5 20.8 201 37-258 3-219 (313)
18 cd06542 GH18_EndoS-like Endo-b 99.9 9.1E-27 2E-31 205.3 18.8 191 97-305 54-252 (255)
19 cd02875 GH18_chitobiase Chitob 99.9 4E-26 8.7E-31 209.6 23.8 149 98-258 68-234 (358)
20 COG3469 Chitinase [Carbohydrat 99.9 4.1E-27 8.9E-32 196.3 15.5 204 96-308 87-326 (332)
21 cd06549 GH18_trifunctional GH1 99.9 2.2E-26 4.8E-31 206.8 20.4 202 38-258 2-211 (298)
22 KOG4701 Chitinase [Cell wall/m 99.9 4E-24 8.7E-29 187.7 20.3 257 34-308 24-315 (568)
23 cd06543 GH18_PF-ChiA-like PF-C 99.8 8.7E-20 1.9E-24 162.5 18.2 221 60-296 24-269 (294)
24 COG3858 Predicted glycosyl hyd 99.7 5.5E-15 1.2E-19 133.2 16.8 151 108-258 159-323 (423)
25 KOG2091 Predicted member of gl 98.8 2.3E-07 4.9E-12 81.0 13.3 186 96-288 129-334 (392)
26 cd06547 GH85_ENGase Endo-beta- 98.2 5.9E-06 1.3E-10 75.4 9.0 146 99-258 51-212 (339)
27 PF02638 DUF187: Glycosyl hydr 97.7 0.00044 9.6E-09 62.6 11.2 129 127-258 130-298 (311)
28 PF11340 DUF3142: Protein of u 97.5 0.0024 5.2E-08 52.4 11.6 111 138-258 27-138 (181)
29 PF13200 DUF4015: Putative gly 97.1 0.044 9.6E-07 49.5 16.2 96 126-223 113-226 (316)
30 PF03644 Glyco_hydro_85: Glyco 96.9 0.0009 1.9E-08 60.5 3.5 111 139-258 86-207 (311)
31 PF07745 Glyco_hydro_53: Glyco 94.0 1.8 3.8E-05 39.6 13.3 140 108-252 70-234 (332)
32 TIGR01370 cysRS possible cyste 93.4 0.6 1.3E-05 42.3 9.2 87 97-186 84-205 (315)
33 PF14883 GHL13: Hypothetical g 90.4 7.9 0.00017 34.5 12.3 140 139-278 122-286 (294)
34 cd02810 DHOD_DHPD_FMN Dihydroo 88.2 11 0.00024 33.6 12.1 79 98-196 87-173 (289)
35 PF02057 Glyco_hydro_59: Glyco 87.1 0.84 1.8E-05 45.2 4.4 118 97-223 115-239 (669)
36 cd02801 DUS_like_FMN Dihydrour 86.4 16 0.00034 31.2 11.7 39 108-163 53-91 (231)
37 PF02055 Glyco_hydro_30: O-Gly 85.9 36 0.00077 33.1 16.9 187 97-298 156-388 (496)
38 PF14871 GHL6: Hypothetical gl 85.1 3.7 8E-05 32.2 6.4 27 134-160 106-132 (132)
39 PF01207 Dus: Dihydrouridine s 84.5 14 0.0003 33.5 10.8 127 145-287 72-213 (309)
40 TIGR02402 trehalose_TreZ malto 83.8 8.2 0.00018 37.9 9.6 49 135-184 220-268 (542)
41 PF14587 Glyco_hydr_30_2: O-Gl 82.0 4 8.6E-05 37.9 6.2 90 99-190 109-222 (384)
42 PRK14582 pgaB outer membrane N 81.3 43 0.00093 33.8 13.6 140 139-278 444-636 (671)
43 cd04740 DHOD_1B_like Dihydroor 80.7 29 0.00062 31.0 11.4 40 108-164 88-127 (296)
44 PRK07259 dihydroorotate dehydr 77.9 35 0.00075 30.6 11.0 89 109-219 91-190 (301)
45 PF13199 Glyco_hydro_66: Glyco 77.7 5 0.00011 39.4 5.7 65 129-195 236-312 (559)
46 COG1649 Uncharacterized protei 77.3 67 0.0014 30.4 13.3 118 139-258 185-343 (418)
47 PLN02495 oxidoreductase, actin 74.8 75 0.0016 29.8 12.7 52 97-164 101-152 (385)
48 COG1306 Uncharacterized conser 69.1 9.8 0.00021 34.0 4.9 79 143-224 200-297 (400)
49 PRK08318 dihydropyrimidine deh 68.7 33 0.00072 32.4 8.9 80 98-196 88-179 (420)
50 TIGR00737 nifR3_yhdG putative 68.6 92 0.002 28.2 14.3 39 108-163 61-99 (319)
51 TIGR02102 pullulan_Gpos pullul 67.2 40 0.00087 36.1 9.7 29 134-162 617-645 (1111)
52 KOG2331 Predicted glycosylhydr 66.8 13 0.00028 34.9 5.3 76 108-184 123-201 (526)
53 cd02940 DHPD_FMN Dihydropyrimi 66.8 48 0.001 29.8 9.2 79 98-195 88-178 (299)
54 PF04476 DUF556: Protein of un 65.8 89 0.0019 27.0 11.9 152 149-308 17-174 (235)
55 PF10566 Glyco_hydro_97: Glyco 64.7 42 0.00091 29.8 8.1 80 97-190 76-155 (273)
56 PRK05286 dihydroorotate dehydr 64.4 1.2E+02 0.0026 27.9 12.2 101 108-219 136-246 (344)
57 PRK14706 glycogen branching en 61.6 34 0.00074 34.4 7.8 58 133-190 280-356 (639)
58 cd04741 DHOD_1A_like Dihydroor 61.2 1.2E+02 0.0027 27.1 11.7 78 98-196 78-168 (294)
59 PRK12568 glycogen branching en 59.9 37 0.0008 34.6 7.6 58 133-190 382-460 (730)
60 COG1891 Uncharacterized protei 59.8 82 0.0018 26.0 8.1 110 128-253 5-119 (235)
61 PRK05402 glycogen branching en 59.4 37 0.0008 34.7 7.7 58 133-190 378-456 (726)
62 COG2342 Predicted extracellula 59.2 1.3E+02 0.0029 26.8 15.0 51 140-190 127-189 (300)
63 PRK10550 tRNA-dihydrouridine s 59.0 1.4E+02 0.0031 27.0 12.7 68 109-194 62-142 (312)
64 cd02803 OYE_like_FMN_family Ol 58.3 1.2E+02 0.0026 27.4 10.3 26 135-161 138-163 (327)
65 PF14885 GHL15: Hypothetical g 58.1 23 0.0005 25.0 4.3 27 134-160 49-75 (79)
66 TIGR00542 hxl6Piso_put hexulos 58.0 26 0.00057 30.9 5.8 47 143-189 20-69 (279)
67 TIGR01515 branching_enzym alph 57.8 43 0.00093 33.5 7.8 58 133-190 269-347 (613)
68 COG1908 FrhD Coenzyme F420-red 57.7 21 0.00046 27.4 4.2 45 141-185 80-125 (132)
69 PLN02960 alpha-amylase 57.5 40 0.00086 35.0 7.4 58 133-190 530-609 (897)
70 TIGR03234 OH-pyruv-isom hydrox 57.0 24 0.00051 30.6 5.2 41 142-190 17-57 (254)
71 PRK11815 tRNA-dihydrouridine s 56.2 40 0.00087 30.9 6.7 39 108-163 63-101 (333)
72 PLN02982 galactinol-raffinose 55.2 82 0.0018 32.3 9.0 60 135-194 465-536 (865)
73 PRK12313 glycogen branching en 54.8 50 0.0011 33.1 7.7 58 133-190 283-360 (633)
74 PF01120 Alpha_L_fucos: Alpha- 54.6 1.1E+02 0.0025 28.0 9.5 82 97-180 141-235 (346)
75 cd00019 AP2Ec AP endonuclease 54.4 36 0.00077 30.0 6.0 42 143-184 14-57 (279)
76 TIGR02104 pulA_typeI pullulana 54.1 33 0.00073 34.2 6.3 47 133-184 293-339 (605)
77 PRK02506 dihydroorotate dehydr 53.2 67 0.0015 29.1 7.6 80 97-196 80-168 (310)
78 PF07172 GRP: Glycine rich pro 52.8 16 0.00034 26.9 2.8 6 1-7 1-6 (95)
79 cd04738 DHOD_2_like Dihydrooro 51.5 1.9E+02 0.0041 26.3 12.4 85 101-196 119-213 (327)
80 TIGR02100 glgX_debranch glycog 51.3 65 0.0014 32.8 7.8 47 133-179 315-365 (688)
81 PRK07565 dihydroorotate dehydr 51.3 69 0.0015 29.3 7.5 99 98-219 91-198 (334)
82 TIGR00742 yjbN tRNA dihydrouri 50.9 54 0.0012 29.8 6.6 67 108-194 53-132 (318)
83 PRK01060 endonuclease IV; Prov 50.0 45 0.00097 29.3 5.9 45 143-187 16-62 (281)
84 TIGR02103 pullul_strch alpha-1 49.8 43 0.00093 35.0 6.4 47 133-184 470-516 (898)
85 cd04739 DHOD_like Dihydroorota 49.4 2.1E+02 0.0045 26.1 12.5 99 98-219 89-196 (325)
86 PRK13209 L-xylulose 5-phosphat 49.1 47 0.001 29.2 5.9 45 144-188 26-73 (283)
87 PRK08446 coproporphyrinogen II 48.4 97 0.0021 28.5 8.0 78 95-178 96-175 (350)
88 PRK13210 putative L-xylulose 5 48.2 47 0.001 29.1 5.8 47 143-189 20-69 (284)
89 PRK02227 hypothetical protein; 47.7 1.9E+02 0.0041 25.2 11.5 147 151-308 19-174 (238)
90 PRK14581 hmsF outer membrane N 44.1 3.6E+02 0.0079 27.4 11.8 140 139-278 444-637 (672)
91 TIGR00736 nifR3_rel_arch TIM-b 43.4 2.2E+02 0.0047 24.6 16.4 74 98-196 59-145 (231)
92 COG3867 Arabinogalactan endo-1 43.4 2.5E+02 0.0055 25.4 14.4 90 153-243 167-272 (403)
93 PRK13523 NADPH dehydrogenase N 43.3 2.6E+02 0.0057 25.6 10.4 27 135-162 139-165 (337)
94 PRK09989 hypothetical protein; 42.8 78 0.0017 27.5 6.3 39 144-190 20-58 (258)
95 PRK14705 glycogen branching en 42.2 94 0.002 33.8 7.6 58 133-190 878-956 (1224)
96 PF01261 AP_endonuc_2: Xylose 40.9 24 0.00053 29.0 2.7 44 146-190 2-45 (213)
97 PF06778 Chlor_dismutase: Chlo 40.0 13 0.00029 31.1 0.9 25 155-180 150-178 (193)
98 cd02911 arch_FMN Archeal FMN-b 39.9 1.6E+02 0.0034 25.4 7.6 74 99-196 64-150 (233)
99 PF15284 PAGK: Phage-encoded v 39.4 20 0.00043 23.8 1.4 22 3-24 1-22 (61)
100 PRK10558 alpha-dehydro-beta-de 37.4 65 0.0014 28.3 4.8 33 146-178 34-66 (256)
101 PRK11372 lysozyme inhibitor; P 37.2 63 0.0014 24.4 4.1 21 1-24 1-21 (109)
102 PRK09856 fructoselysine 3-epim 37.1 84 0.0018 27.4 5.6 47 143-189 17-64 (275)
103 cd04747 OYE_like_5_FMN Old yel 36.8 1.2E+02 0.0026 28.1 6.7 50 134-184 140-207 (361)
104 PRK10128 2-keto-3-deoxy-L-rham 36.5 70 0.0015 28.3 4.9 33 146-178 33-65 (267)
105 cd04733 OYE_like_2_FMN Old yel 36.1 1.2E+02 0.0025 27.8 6.5 27 135-162 146-172 (338)
106 TIGR03849 arch_ComA phosphosul 36.0 1.1E+02 0.0024 26.6 5.9 40 139-178 71-110 (237)
107 cd02933 OYE_like_FMN Old yello 35.0 1.3E+02 0.0027 27.7 6.5 27 135-162 149-175 (338)
108 PF05990 DUF900: Alpha/beta hy 35.0 2.1E+02 0.0046 24.6 7.6 61 106-180 14-89 (233)
109 PLN03231 putative alpha-galact 34.8 1.5E+02 0.0032 27.5 6.8 57 137-195 161-217 (357)
110 cd02932 OYE_YqiM_FMN Old yello 34.8 1.1E+02 0.0024 27.9 6.1 26 134-160 150-175 (336)
111 PRK08255 salicylyl-CoA 5-hydro 34.6 4.2E+02 0.0092 27.3 10.9 26 135-161 548-573 (765)
112 PLN03244 alpha-amylase; Provis 33.5 1.6E+02 0.0035 30.5 7.3 26 134-159 506-531 (872)
113 PF02065 Melibiase: Melibiase; 33.2 1.2E+02 0.0025 28.6 6.0 31 133-163 164-194 (394)
114 TIGR03239 GarL 2-dehydro-3-deo 32.8 87 0.0019 27.4 4.9 33 146-178 27-59 (249)
115 PRK13111 trpA tryptophan synth 32.3 3.5E+02 0.0076 23.8 11.1 101 139-256 108-209 (258)
116 PLN02877 alpha-amylase/limit d 32.2 1.2E+02 0.0027 32.0 6.5 30 134-163 534-563 (970)
117 TIGR03852 sucrose_gtfA sucrose 31.3 2E+02 0.0043 27.9 7.3 154 138-308 168-344 (470)
118 TIGR01036 pyrD_sub2 dihydrooro 31.2 4.1E+02 0.009 24.3 12.5 86 100-196 125-221 (335)
119 TIGR01037 pyrD_sub1_fam dihydr 31.1 2.3E+02 0.005 25.2 7.5 66 109-194 90-166 (300)
120 PRK07379 coproporphyrinogen II 30.9 1.7E+02 0.0036 27.5 6.8 79 94-178 112-192 (400)
121 cd02929 TMADH_HD_FMN Trimethyl 30.5 1.5E+02 0.0032 27.6 6.3 27 135-162 147-173 (370)
122 cd00812 LeuRS_core catalytic c 30.2 1.7E+02 0.0036 26.4 6.5 55 133-190 64-119 (314)
123 TIGR00539 hemN_rel putative ox 29.8 2.2E+02 0.0048 26.2 7.3 78 95-178 98-177 (360)
124 PF02679 ComA: (2R)-phospho-3- 29.7 40 0.00087 29.4 2.2 78 98-194 58-135 (244)
125 smart00812 Alpha_L_fucos Alpha 29.1 3.1E+02 0.0066 25.7 8.1 66 97-164 131-205 (384)
126 KOG0995 Centromere-associated 29.0 89 0.0019 30.6 4.5 54 129-183 64-118 (581)
127 PRK05799 coproporphyrinogen II 28.7 2.4E+02 0.0052 26.0 7.4 79 95-179 97-177 (374)
128 cd04735 OYE_like_4_FMN Old yel 28.4 1.9E+02 0.0041 26.7 6.6 27 134-161 140-166 (353)
129 PF00724 Oxidored_FMN: NADH:fl 28.4 2.2E+02 0.0047 26.1 6.9 28 135-163 146-173 (341)
130 PRK05628 coproporphyrinogen II 28.4 1.9E+02 0.0042 26.8 6.7 78 95-178 106-185 (375)
131 CHL00200 trpA tryptophan synth 28.1 4.2E+02 0.0091 23.4 11.7 102 139-257 110-212 (263)
132 cd02930 DCR_FMN 2,4-dienoyl-Co 27.8 2E+02 0.0043 26.5 6.6 26 134-160 133-158 (353)
133 PRK13861 type IV secretion sys 27.7 1E+02 0.0022 27.7 4.5 10 156-165 132-141 (292)
134 COG3410 Uncharacterized conser 27.4 85 0.0018 25.6 3.5 34 130-163 143-176 (191)
135 COG0429 Predicted hydrolase of 27.3 3.4E+02 0.0074 25.0 7.6 62 110-184 75-148 (345)
136 PRK03705 glycogen debranching 27.0 79 0.0017 32.0 4.0 30 133-162 310-339 (658)
137 COG0042 tRNA-dihydrouridine sy 26.7 4.9E+02 0.011 23.7 13.7 46 145-192 85-143 (323)
138 cd04734 OYE_like_3_FMN Old yel 26.6 2E+02 0.0043 26.4 6.3 27 134-161 137-163 (343)
139 PLN02899 alpha-galactosidase 26.2 2E+02 0.0044 28.8 6.4 55 137-195 193-248 (633)
140 PRK10605 N-ethylmaleimide redu 26.1 2.3E+02 0.005 26.3 6.7 28 134-162 155-182 (362)
141 COG0635 HemN Coproporphyrinoge 26.1 2.7E+02 0.0059 26.4 7.3 86 90-182 130-215 (416)
142 COG1540 Uncharacterized protei 26.0 2.3E+02 0.005 24.6 6.0 50 139-188 192-248 (252)
143 COG0050 TufB GTPases - transla 25.8 1.7E+02 0.0036 26.6 5.3 52 132-183 142-198 (394)
144 PRK14864 putative biofilm stre 25.7 93 0.002 23.3 3.2 8 111-118 81-88 (104)
145 COG5185 HEC1 Protein involved 25.3 1.2E+02 0.0025 29.1 4.4 53 130-183 99-152 (622)
146 COG2179 Predicted hydrolase of 25.2 3.9E+02 0.0084 22.0 7.0 46 145-190 20-67 (175)
147 PRK08207 coproporphyrinogen II 25.2 2.1E+02 0.0045 27.8 6.4 78 95-178 267-346 (488)
148 PRK07667 uridine kinase; Provi 25.1 2.1E+02 0.0045 23.7 5.7 41 106-159 12-54 (193)
149 cd06602 GH31_MGAM_SI_GAA This 25.0 1.3E+02 0.0027 27.7 4.7 55 142-196 27-90 (339)
150 cd06589 GH31 The enzymes of gl 24.9 1.7E+02 0.0037 25.6 5.4 49 97-163 69-117 (265)
151 PRK05904 coproporphyrinogen II 24.9 3.2E+02 0.0069 25.2 7.4 78 95-178 101-180 (353)
152 TIGR00250 RNAse_H_YqgF RNAse H 24.7 1.8E+02 0.0039 22.6 4.9 29 236-264 38-66 (130)
153 cd06592 GH31_glucosidase_KIAA1 24.5 2E+02 0.0043 25.8 5.9 56 141-197 32-95 (303)
154 cd02931 ER_like_FMN Enoate red 24.4 92 0.002 29.1 3.8 25 135-160 147-171 (382)
155 cd06601 GH31_lyase_GLase GLase 24.3 1.5E+02 0.0032 27.2 5.0 53 141-194 26-86 (332)
156 COG4724 Endo-beta-N-acetylgluc 24.2 1.6E+02 0.0034 27.7 5.0 42 140-181 175-219 (553)
157 PLN02411 12-oxophytodienoate r 24.2 2.6E+02 0.0056 26.3 6.7 27 135-162 162-188 (391)
158 PRK02624 psbH photosystem II r 23.7 1E+02 0.0022 20.6 2.7 22 140-161 38-63 (64)
159 PF04468 PSP1: PSP1 C-terminal 23.6 2.6E+02 0.0057 20.0 5.2 44 140-183 27-81 (88)
160 COG0296 GlgB 1,4-alpha-glucan 23.6 87 0.0019 31.4 3.5 29 133-161 277-305 (628)
161 PRK12677 xylose isomerase; Pro 23.5 3E+02 0.0064 25.8 6.9 47 143-189 35-84 (384)
162 cd06593 GH31_xylosidase_YicI Y 23.4 1.7E+02 0.0038 26.1 5.3 54 142-196 27-90 (308)
163 cd06591 GH31_xylosidase_XylS X 23.2 2.3E+02 0.0049 25.7 6.0 27 137-163 134-160 (319)
164 PF00834 Ribul_P_3_epim: Ribul 23.0 3.3E+02 0.0071 22.9 6.5 67 146-227 74-140 (201)
165 PRK10076 pyruvate formate lyas 23.0 4E+02 0.0087 22.6 7.1 72 142-224 22-99 (213)
166 PRK09441 cytoplasmic alpha-amy 22.8 2E+02 0.0044 27.7 5.9 27 135-161 209-235 (479)
167 PRK06294 coproporphyrinogen II 22.8 3.2E+02 0.0068 25.3 7.0 78 95-178 101-180 (370)
168 TIGR00262 trpA tryptophan synt 22.6 5.2E+02 0.011 22.6 11.9 64 146-221 109-173 (256)
169 PF07582 AP_endonuc_2_N: AP en 22.5 2E+02 0.0044 18.7 4.0 38 143-180 4-43 (55)
170 PF09010 AsiA: Anti-Sigma Fact 22.5 79 0.0017 22.9 2.2 29 143-178 13-41 (91)
171 TIGR03860 FMN_nitrolo FMN-depe 22.5 1.5E+02 0.0033 28.0 4.9 46 139-187 365-410 (422)
172 COG0162 TyrS Tyrosyl-tRNA synt 22.4 4E+02 0.0086 25.2 7.4 76 97-180 54-139 (401)
173 COG3969 Predicted phosphoadeno 22.1 2.7E+02 0.0059 25.7 6.0 54 110-181 28-84 (407)
174 cd06589 GH31 The enzymes of gl 22.1 1.9E+02 0.0041 25.3 5.2 77 142-223 27-115 (265)
175 PF08869 XisI: XisI protein; 22.0 39 0.00085 25.6 0.6 14 243-256 86-99 (111)
176 PF02402 Lysis_col: Lysis prot 22.0 60 0.0013 20.1 1.3 22 3-24 1-22 (46)
177 PLN02447 1,4-alpha-glucan-bran 21.8 85 0.0018 32.3 3.1 26 134-159 365-390 (758)
178 PRK05660 HemN family oxidoredu 21.8 3.8E+02 0.0081 24.9 7.3 79 94-178 104-184 (378)
179 TIGR02631 xylA_Arthro xylose i 21.7 3.2E+02 0.007 25.5 6.8 44 146-189 39-85 (382)
180 PF11090 DUF2833: Protein of u 21.7 1.5E+02 0.0032 21.4 3.4 66 112-182 10-82 (86)
181 TIGR02311 HpaI 2,4-dihydroxyhe 21.5 2E+02 0.0043 25.1 5.1 30 146-175 27-56 (249)
182 cd06591 GH31_xylosidase_XylS X 21.4 2E+02 0.0044 26.0 5.3 54 142-196 27-90 (319)
183 cd06595 GH31_xylosidase_XylS-l 21.2 1.8E+02 0.0038 26.0 4.8 53 142-195 28-97 (292)
184 cd06602 GH31_MGAM_SI_GAA This 21.2 5.4E+02 0.012 23.5 8.1 27 137-163 140-166 (339)
185 PF00128 Alpha-amylase: Alpha 20.9 1.7E+02 0.0037 25.5 4.7 50 137-192 147-198 (316)
186 PRK13125 trpA tryptophan synth 20.9 5.5E+02 0.012 22.1 8.9 63 146-220 95-160 (244)
187 COG4782 Uncharacterized protei 20.9 1.8E+02 0.004 27.0 4.7 60 108-181 114-188 (377)
188 PF07364 DUF1485: Protein of u 20.8 4E+02 0.0087 23.9 6.9 167 98-284 49-229 (292)
189 PF00563 EAL: EAL domain; Int 20.7 4.9E+02 0.011 21.5 7.8 70 98-191 138-209 (236)
190 PRK09505 malS alpha-amylase; R 20.5 1.3E+02 0.0027 30.7 4.0 26 135-160 437-462 (683)
191 PF03537 Glyco_hydro_114: Glyc 20.4 1.3E+02 0.0028 20.8 3.0 25 96-122 38-64 (74)
192 KOG1643 Triosephosphate isomer 20.3 5.5E+02 0.012 21.9 8.3 48 108-163 118-166 (247)
193 cd00817 ValRS_core catalytic c 20.1 3.7E+02 0.0081 25.0 6.9 51 136-189 84-135 (382)
194 TIGR02403 trehalose_treC alpha 20.0 4.4E+02 0.0095 25.9 7.6 45 139-183 173-235 (543)
No 1
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=100.00 E-value=2e-51 Score=357.85 Aligned_cols=250 Identities=62% Similarity=1.096 Sum_probs=213.9
Q ss_pred EEEeeeeecccccccccCCCCeeEEEEEEEeeecCCCCCCCCCCCccccccCCCCCCHHHHHHHHhhCCCcEEEEEECCC
Q 021511 40 REYIGAEFNNVKFTDVPINSNVEFHYILSFAIDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALSLGGD 119 (311)
Q Consensus 40 ~~Y~~~~~~~~~~~~~~i~~~~~Thii~~fa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~~~~g~kvllsiGG~ 119 (311)
.-|.+......++++++++..+||||||+|+++.+... .+.++.|...|+.+...++++..+|+++|++|||+|||||
T Consensus 3 ~~y~~~~~~~~~~~dip~~~~~~thii~aFa~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lK~~~p~lKvllSiGG~ 80 (253)
T cd06544 3 REYIGADFNGVTFSDVPINPKVEFHFILSFAIDYDTES--NPTNGKFNPYWDTENLTPEAVKSIKAQHPNVKVVISIGGR 80 (253)
T ss_pred hhhhccCCCCccccccCCCCCeeEEEEEEeeeeccccc--CCCCCccccccCccccCHHHHHHHHHhCCCcEEEEEeCCC
Confidence 45666555555677777776669999999995433221 2346778888988877899999999999999999999999
Q ss_pred CCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhCCCeEEEEeCCCCCch
Q 021511 120 SVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQ 199 (311)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~ 199 (311)
+.+...+.+++++|++++++|++|+++++++|||||||||||+|+.|+++|+.|++|||++|++++++++++++|.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~~d~~~f~~ll~~l~~~l~~~~~lt~a~vap~~~~~ 160 (253)
T cd06544 81 GVQNNPTPFDPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFPADPDTFVECIGQLITELKNNGVIKVASIAPSEDAE 160 (253)
T ss_pred CCCCCccccCchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCCcCHHHHHHHHHHHHHHhhhcCCeEEEEecCCcccc
Confidence 98654456678899999999999999999999999999999999889999999999999999999999999999976532
Q ss_pred hhhhHHHHHHhhCCeeeEEEecccCCCCCCCHHHHHHHHHHhhcCCCCCcEEEceecCC-CCCCCChhhHHHHHHHHhcC
Q 021511 200 VQSHYLALWKSYGDLIDYVNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFISDG-SGGLAPGDGFFTACSRLKSQ 278 (311)
Q Consensus 200 ~~~~y~~~~~~~~d~id~~~~~~y~~~~~~~~~~~~~~~~~~~~~~p~~KivlG~p~~~-~~g~~~~~~~~~~~~~~~~~ 278 (311)
...|.+++.++.|+||+|+||+|+.+...+++.+++.|.++.+++|++||++|+|+++ .+++++++.+++++..++++
T Consensus 161 -~~~y~~~~~~~~d~id~~~~qfy~~~~~~~~~~~~~~~~~~~~~~p~~Kv~lGl~a~~~~~~~v~~~~~~~~lp~l~~~ 239 (253)
T cd06544 161 -QSHYLALYNAYGDYIDYVNYQFYNYGVPTTVAKYVEFYDEVANNYPGKKVLASFSTDGEDGANIPGEIFIGGCKRLKKN 239 (253)
T ss_pred -ccccHHHHHHhhCceeEEEhhhhCCCCCCCHHHHHHHHHHHHhCCCcccEEEEEecCCCccCcCChHHhhhhchHhhhC
Confidence 4567888899999999999999988777788888889999889999999999999998 44458888899999999999
Q ss_pred CCCCeEEEEeeeCC
Q 021511 279 KQLHGIFVWSADDS 292 (311)
Q Consensus 279 ~~~~Gvm~W~~~~d 292 (311)
+++||||+|+++++
T Consensus 240 ~~~gGvm~W~~~~~ 253 (253)
T cd06544 240 GSLPGVFIWNADDS 253 (253)
T ss_pred CCCCeEEEEecCCC
Confidence 99999999999874
No 2
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=8.2e-42 Score=306.78 Aligned_cols=244 Identities=17% Similarity=0.204 Sum_probs=172.4
Q ss_pred eEEEEeeeeecccccccccCCCCeeEEEEEEEe-eecCCCCCCCCCCCccccccCCCCCCHHHHHHHHhhCCCcEEEEEE
Q 021511 38 LFREYIGAEFNNVKFTDVPINSNVEFHYILSFA-IDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALSL 116 (311)
Q Consensus 38 vv~~Y~~~~~~~~~~~~~~i~~~~~Thii~~fa-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~~~~g~kvllsi 116 (311)
++|||.+|. ..+.+.+++..+||||+|+|+ ++.++.. +. +.. + ......+.++.+|+++|++|+|+||
T Consensus 5 ~~~Y~~~w~---~~~~~~~i~~~~~THi~yaf~~~~~~~~~-~~-----~~~-~-~~~~~~~~~~~~k~~~~~lkvlisi 73 (299)
T cd02879 5 KGGYWPAWS---EEFPPSNIDSSLFTHLFYAFADLDPSTYE-VV-----ISP-S-DESEFSTFTETVKRKNPSVKTLLSI 73 (299)
T ss_pred EEEEECCCC---CCCChhHCCcccCCEEEEEEEEecCCCCE-Ee-----ecc-c-cHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 455555676 467888899999999999999 6655432 00 000 1 1111123345789999999999999
Q ss_pred CCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC--CChhhHHHHHHHHHHHHhh-------CCCe
Q 021511 117 GGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ--ADPNTFAECIGRLIKTLKK-------NGAI 187 (311)
Q Consensus 117 GG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~--~d~~~~~~~l~~Lr~~l~~-------~~~~ 187 (311)
|||+.++.. ++..++.++.|++|++++++++++|||||||||||+|. +|+++|+.||+|||++|++ .+++
T Consensus 74 GG~~~~s~~-fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~~~~~~~~~ 152 (299)
T cd02879 74 GGGGSDSSA-FAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEARSSGRPPLL 152 (299)
T ss_pred eCCCCCCch-hhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhhccCCCcEE
Confidence 999874321 23444555667799999999999999999999999984 6789999999999999984 3456
Q ss_pred EEEEeCCCCCc---hhhhhH-HHHHHhhCCeeeEEEecccCCCCC---------------CCHHHHHHHHHHhhcCCCCC
Q 021511 188 SFASIAPYDDD---QVQSHY-LALWKSYGDLIDYVNFQFYAYAQG---------------TSVSQFMDYFKTQSSNYKGG 248 (311)
Q Consensus 188 ~~a~~~p~~~~---~~~~~y-~~~~~~~~d~id~~~~~~y~~~~~---------------~~~~~~~~~~~~~~~~~p~~ 248 (311)
+++++++.... .....| .+.+.+++|+|++|+||+|+.+.. .+++..++.|.. .|+|++
T Consensus 153 ls~av~~~~~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~~~--~g~p~~ 230 (299)
T cd02879 153 LTAAVYFSPILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSWIK--AGVPAK 230 (299)
T ss_pred EEeecccchhhccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHHHH--cCCCHH
Confidence 66665442210 012345 477899999999999999975431 134666777765 489999
Q ss_pred cEEEceecCC-CC-C------------------CCChhhHHHHHHHHhcCCCCCeEEEEeeeCCCCCC
Q 021511 249 KVLVSFISDG-SG-G------------------LAPGDGFFTACSRLKSQKQLHGIFVWSADDSKKNG 296 (311)
Q Consensus 249 KivlG~p~~~-~~-g------------------~~~~~~~~~~~~~~~~~~~~~Gvm~W~~~~d~~~~ 296 (311)
||+||+|+|| .+ + +..+.++..-++.++ +.++||+|+|+++.|..++
T Consensus 231 KlvlGvp~YGr~~~~~D~~~~~~y~~~~~~wi~ydd~~Si~~K~~~a~-~~~lgGv~~W~l~~Dd~~~ 297 (299)
T cd02879 231 KLVLGLPLYGRAWTLYDTTTVSSYVYAGTTWIGYDDVQSIAVKVKYAK-QKGLLGYFAWAVGYDDNNW 297 (299)
T ss_pred HEEEEeccccccccccCCCcceEEEEECCEEEEeCCHHHHHHHHHHHH-hCCCCeEEEEEeecCCccc
Confidence 9999999998 22 1 222233333344444 5689999999999997654
No 3
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=100.00 E-value=2.5e-41 Score=296.27 Aligned_cols=239 Identities=21% Similarity=0.254 Sum_probs=171.8
Q ss_pred CeEEEEeeeeeccccccc----ccCCCCeeEEEEEEEe-eecCCCCCCCCCCCccccccCC-C--CCCHHHHHHHHhhCC
Q 021511 37 NLFREYIGAEFNNVKFTD----VPINSNVEFHYILSFA-IDYDTSSSPSPTNGKFNVFWDT-G--NLSPSQVSAIKNRHS 108 (311)
Q Consensus 37 ~vv~~Y~~~~~~~~~~~~----~~i~~~~~Thii~~fa-~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~i~~lk~~~~ 108 (311)
|+||||..|+.++..... ..++..+||||+|+|+ ++.+|.+... ..+.. + ....++++.||+ +
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G~l~~~-------d~~~~~~~~~~~~~~i~~~~~--~ 71 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDGNIHLN-------DHPPDHPRFTTLWTELAILQS--S 71 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCCeEEEC-------CCCCCcchhhHHHHHHHHHHh--C
Confidence 689999888665433222 2345678999999999 7666665221 11111 1 123456777776 8
Q ss_pred CcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhCCCeE
Q 021511 109 NVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAIS 188 (311)
Q Consensus 109 g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~~~~~ 188 (311)
|+|||+|||||+.+. ....++.++.|++|++++.+++++|+|||||||||+|. +.++|..|++|||++++++.+++
T Consensus 72 g~KVllSiGG~~~~~---fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~-~~~~~~~ll~~Lr~~~~~~~~lT 147 (256)
T cd06546 72 GVKVMGMLGGAAPGS---FSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPM-SLDGIIRLIDRLRSDFGPDFIIT 147 (256)
T ss_pred CCEEEEEECCCCCCC---cccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCC-CHhHHHHHHHHHHHHhCCCcEEE
Confidence 999999999997543 22333455677889999999999999999999999984 46799999999999997654555
Q ss_pred EEEeCCCCCch--h--hhhHHHHHHhhCCeeeEEEecccCC-CCCCCHHHHHHHHHHhhcCCCCCcEEEceecCC--CCC
Q 021511 189 FASIAPYDDDQ--V--QSHYLALWKSYGDLIDYVNFQFYAY-AQGTSVSQFMDYFKTQSSNYKGGKVLVSFISDG--SGG 261 (311)
Q Consensus 189 ~a~~~p~~~~~--~--~~~y~~~~~~~~d~id~~~~~~y~~-~~~~~~~~~~~~~~~~~~~~p~~KivlG~p~~~--~~g 261 (311)
.+++++..... . .-.|.++.....++||++++|+|+. +...+...+..++ ..++|++||++|+|+.+ ++|
T Consensus 148 ~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~~~~~~~~~~~---~~~~~~~Kv~iGlpa~~~a~~G 224 (256)
T cd06546 148 LAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSMSSPSDYDAIV---AQGWDPERIVIGLLTNPDNGQG 224 (256)
T ss_pred ECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCccCHHHHHHHH---HcCCCcccEEEEEeccCCcCCC
Confidence 55555432110 0 1134566677889999999999975 3444444443333 23899999999999986 677
Q ss_pred CCChhhHHHHHHHHhcC-CCCCeEEEEeeeC
Q 021511 262 LAPGDGFFTACSRLKSQ-KQLHGIFVWSADD 291 (311)
Q Consensus 262 ~~~~~~~~~~~~~~~~~-~~~~Gvm~W~~~~ 291 (311)
+++++++..++..++++ +++||||+|+...
T Consensus 225 yv~~~~l~~~v~~l~~~~~~~gGvm~W~~~~ 255 (256)
T cd06546 225 FVPFDTLSSTLSTLRQRYPNFGGVMGWEYFN 255 (256)
T ss_pred ccCHHHHHHHHHHHHHhCCCCceEEEecccC
Confidence 99999999999999765 6999999998653
No 4
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=100.00 E-value=5.7e-40 Score=296.55 Aligned_cols=260 Identities=21% Similarity=0.247 Sum_probs=180.2
Q ss_pred CeEEEEeeeeecccccc-cccCCCCeeEEEEEEEe-eecCCCCCCCCCCCccccccCCCCCCHHHHHHHHhhCCCcEEEE
Q 021511 37 NLFREYIGAEFNNVKFT-DVPINSNVEFHYILSFA-IDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVAL 114 (311)
Q Consensus 37 ~vv~~Y~~~~~~~~~~~-~~~i~~~~~Thii~~fa-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~~~~g~kvll 114 (311)
++||||..|...+.... +....++.||||+|+|+ +..++.... ..+......-.......++++.+|+ +|+||||
T Consensus 2 ~~vgY~~~w~~~~~~~~~~~~~~~~~yt~i~~AF~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~q~--~G~KVll 78 (312)
T cd02871 2 VLVGYWHNWDNGAGSGRQDLDDVPSKYNVINVAFAEPTSDGGGEV-TFNNGSSPGGYSPAEFKADIKALQA--KGKKVLI 78 (312)
T ss_pred eEEEecCcccCCCCCCCCCcccCCCCCCEEEEcceeecCCCceeE-eecccCCcccCChHHHHHHHHHHHH--CCCEEEE
Confidence 46666666766543333 33444578999999999 554443311 0000000000011123566777877 6899999
Q ss_pred EECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCC------ChhhHHHHHHHHHHHHhhCCCeE
Q 021511 115 SLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQA------DPNTFAECIGRLIKTLKKNGAIS 188 (311)
Q Consensus 115 siGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~------d~~~~~~~l~~Lr~~l~~~~~~~ 188 (311)
||||+..+. . .+..+.|++|++++++++++|||||||||||+|.. ++++|+.+|++||++++++.+++
T Consensus 79 SiGG~~~~~--~----~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~~~~lT 152 (312)
T cd02871 79 SIGGANGHV--D----LNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGPNFILT 152 (312)
T ss_pred EEeCCCCcc--c----cCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 999997652 1 23445567899999999999999999999999842 45899999999999998644455
Q ss_pred EEEeCCCCCc------hhhhhHHHHHHhhCCeeeEEEecccCCCCCCC---------HHHHH----HHHHHhh-------
Q 021511 189 FASIAPYDDD------QVQSHYLALWKSYGDLIDYVNFQFYAYAQGTS---------VSQFM----DYFKTQS------- 242 (311)
Q Consensus 189 ~a~~~p~~~~------~~~~~y~~~~~~~~d~id~~~~~~y~~~~~~~---------~~~~~----~~~~~~~------- 242 (311)
.++++|+... .....|.+++.++.++||++++|+||.+.... ..... +.+.+..
T Consensus 153 ~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (312)
T cd02871 153 MAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMGGCDGQSYSQGTADFLVALADMLLTGFPIAGNDR 232 (312)
T ss_pred ECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCcccccccCCccchhHHHHHHHHHHHcCCCccCCcc
Confidence 5555554431 02345777778888899999999997543211 11111 1222221
Q ss_pred -cCCCCCcEEEceecCC---CCCCCChhhHHHHHHHHhcC------------CCCCeEEEEeeeCCCCCCceechhHHH
Q 021511 243 -SNYKGGKVLVSFISDG---SGGLAPGDGFFTACSRLKSQ------------KQLHGIFVWSADDSKKNGFRYEKQSQA 305 (311)
Q Consensus 243 -~~~p~~KivlG~p~~~---~~g~~~~~~~~~~~~~~~~~------------~~~~Gvm~W~~~~d~~~~~~~~~~~~~ 305 (311)
.++|++||++|+|+.+ ++|+++++.+.+++..++++ +++||||+|++++|..++|.|++.+++
T Consensus 233 ~~~~p~~Kv~iG~pa~~~aa~~gyv~~~~l~~~i~~l~~~~~~~~~~~~~~y~~~gGvm~W~~~~d~~~~~~f~~~~~~ 311 (312)
T cd02871 233 FPPLPADKVVIGLPASPSAAGGGYVSPSEVIKALDCLMKGTNCGSYYPAGGYPSLRGLMTWSINWDATNNYEFSKNYGA 311 (312)
T ss_pred cccCChhhEEEeccCCCCccCCCccCHHHHHHHHHHHhcCCCCCcccCCCCCCCcceEEEEEecccCcCCcccchhccC
Confidence 2379999999999986 47899999999999999877 679999999999999999999987754
No 5
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=6.2e-40 Score=298.14 Aligned_cols=249 Identities=20% Similarity=0.243 Sum_probs=176.8
Q ss_pred eEEEEeeeeecccccccc-cCCCCeeEEEEEEEe-eecCCCCCCCCCC---------Ccccccc-CCCCCCHHHHHHHHh
Q 021511 38 LFREYIGAEFNNVKFTDV-PINSNVEFHYILSFA-IDYDTSSSPSPTN---------GKFNVFW-DTGNLSPSQVSAIKN 105 (311)
Q Consensus 38 vv~~Y~~~~~~~~~~~~~-~i~~~~~Thii~~fa-~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~i~~lk~ 105 (311)
|+|||.+|...+....+. +++..+||||+|+|+ ++.++.+...+.. +...... +......+++..+|+
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~ 80 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLRKLKQ 80 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHHHHHH
Confidence 578888887766555555 588889999999999 8777765211000 0000001 112234688889999
Q ss_pred hCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC-----------CChhhHHHHH
Q 021511 106 RHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ-----------ADPNTFAECI 174 (311)
Q Consensus 106 ~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~-----------~d~~~~~~~l 174 (311)
++|++|||+|||||+.+..| ...++.++.|++|++++++++++|+|||||||||+|. +|+++|+.||
T Consensus 81 ~~p~lkvl~siGG~~~s~~f--~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll 158 (322)
T cd06548 81 KNPHLKILLSIGGWTWSGGF--SDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLL 158 (322)
T ss_pred hCCCCEEEEEEeCCCCCCCc--hhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHH
Confidence 99999999999999876432 3344556667789999999999999999999999984 4679999999
Q ss_pred HHHHHHHhhC------CCeEEEEeCCCCCchhhhhHHHHHHhhCCeeeEEEecccCCCC------------------CCC
Q 021511 175 GRLIKTLKKN------GAISFASIAPYDDDQVQSHYLALWKSYGDLIDYVNFQFYAYAQ------------------GTS 230 (311)
Q Consensus 175 ~~Lr~~l~~~------~~~~~a~~~p~~~~~~~~~y~~~~~~~~d~id~~~~~~y~~~~------------------~~~ 230 (311)
++||++|++. .+++++++++... .....+.+.+.+++|+|++|+||+|+.+. ..+
T Consensus 159 ~~Lr~~l~~~~~~~~~~~~Ls~av~~~~~-~~~~~~~~~l~~~vD~vnlMtYD~~g~w~~~~g~~spL~~~~~~~~~~~~ 237 (322)
T cd06548 159 KELREALDALGAETGRKYLLTIAAPAGPD-KLDKLEVAEIAKYLDFINLMTYDFHGAWSNTTGHHSNLYASPADPPGGYS 237 (322)
T ss_pred HHHHHHHHHhhhccCCceEEEEEccCCHH-HHhcCCHHHHhhcCCEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCcc
Confidence 9999999874 3677777665331 12222367889999999999999997532 124
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEceecCC-CC-CC------------------------CChhhHHHHHHHHhcCCCCCeE
Q 021511 231 VSQFMDYFKTQSSNYKGGKVLVSFISDG-SG-GL------------------------APGDGFFTACSRLKSQKQLHGI 284 (311)
Q Consensus 231 ~~~~~~~~~~~~~~~p~~KivlG~p~~~-~~-g~------------------------~~~~~~~~~~~~~~~~~~~~Gv 284 (311)
++..++.|... |+|++||+||+|+|| .+ .+ ..+.+ +..-..+.++.++||+
T Consensus 238 v~~~v~~~~~~--gvp~~KlvlGip~YGr~~~~~~~~~D~~~~~~y~~~~~~~~~v~ydd~~S-i~~K~~~a~~~~LgGv 314 (322)
T cd06548 238 VDAAVNYYLSA--GVPPEKLVLGVPFYGRGWTGYTRYWDEVAKAPYLYNPSTKTFISYDDPRS-IKAKADYVKDKGLGGV 314 (322)
T ss_pred HHHHHHHHHHc--CCCHHHeEEEecccccccCCcEEEEcCCcceeEEEeCCCCeEEEeCCHHH-HHHHHHHHHhcCCccE
Confidence 56777777664 899999999999998 21 10 01111 2222223345689999
Q ss_pred EEEeeeCC
Q 021511 285 FVWSADDS 292 (311)
Q Consensus 285 m~W~~~~d 292 (311)
|+|+++.|
T Consensus 315 ~~W~l~~D 322 (322)
T cd06548 315 MFWELSGD 322 (322)
T ss_pred EEEeccCC
Confidence 99999876
No 6
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=1.8e-39 Score=303.18 Aligned_cols=213 Identities=19% Similarity=0.309 Sum_probs=159.9
Q ss_pred CeEEEEeeeeec---ccccccccCCCCe--eEEEEEEEe-eecCCCCCCCCCCCccccccCCCCCCHHHHHHHHhhCCCc
Q 021511 37 NLFREYIGAEFN---NVKFTDVPINSNV--EFHYILSFA-IDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNV 110 (311)
Q Consensus 37 ~vv~~Y~~~~~~---~~~~~~~~i~~~~--~Thii~~fa-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~~~~g~ 110 (311)
|+||||.+|... ..++.+++|++.+ ||||+|+|+ +++++.. +.+.+.. .+.+...+++++.+|++||++
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~-~~~~~~~----~~~~~~~~~~~~~lk~~~p~l 75 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYK-IKSLNED----LDLDKSHYRAITSLKRKYPHL 75 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCE-EEecCcc----cchhhhHHHHHHHHHhhCCCC
Confidence 588988876443 3477888999865 999999999 7765322 1111111 111223478899999999999
Q ss_pred EEEEEECCCCCCCC----ceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC----------------------
Q 021511 111 KVALSLGGDSVSSG----KVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ---------------------- 164 (311)
Q Consensus 111 kvllsiGG~~~~~~----~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~---------------------- 164 (311)
|||+|||||+.+.. ..++..++.++.|++||+++++++++|+|||||||||+|.
T Consensus 76 KvllSiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~ 155 (413)
T cd02873 76 KVLLSVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFT 155 (413)
T ss_pred eEEEeecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhcccc
Confidence 99999999986421 1233445566777899999999999999999999999983
Q ss_pred ----------CChhhHHHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhhH-HHHHHhhCCeeeEEEecccCCCCC-----
Q 021511 165 ----------ADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHY-LALWKSYGDLIDYVNFQFYAYAQG----- 228 (311)
Q Consensus 165 ----------~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~y-~~~~~~~~d~id~~~~~~y~~~~~----- 228 (311)
+|+++|+.||+|||++|++.+++++++++|.... ...| .+.+.+++|+|++|+||+|+.+..
T Consensus 156 g~~~~~~~~~~d~~nf~~Ll~elr~~l~~~~~~ls~av~~~~~~--~~~~d~~~l~~~vD~inlMtYD~~g~~~~~~~~~ 233 (413)
T cd02873 156 GDSVVDEKAAEHKEQFTALVRELKNALRPDGLLLTLTVLPHVNS--TWYFDVPAIANNVDFVNLATFDFLTPERNPEEAD 233 (413)
T ss_pred cccccCCCChhHHHHHHHHHHHHHHHhcccCcEEEEEecCCchh--ccccCHHHHhhcCCEEEEEEecccCCCCCCCccC
Confidence 3578999999999999999888888877664321 1224 578899999999999999964311
Q ss_pred --------------CCHHHHHHHHHHhhcCCCCCcEEEceecCC
Q 021511 229 --------------TSVSQFMDYFKTQSSNYKGGKVLVSFISDG 258 (311)
Q Consensus 229 --------------~~~~~~~~~~~~~~~~~p~~KivlG~p~~~ 258 (311)
.+++..++.|.+. |+|++||+||+|+||
T Consensus 234 ~~apL~~~~~~~~~~~v~~~v~~~~~~--gvp~~KlvlGip~YG 275 (413)
T cd02873 234 YTAPIYELYERNPHHNVDYQVKYWLNQ--GTPASKLNLGIATYG 275 (413)
T ss_pred cCCccCCCccccccccHHHHHHHHHHc--CCCHHHeEEEEecce
Confidence 1355667777654 899999999999998
No 7
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.1e-39 Score=286.47 Aligned_cols=221 Identities=21% Similarity=0.228 Sum_probs=159.8
Q ss_pred CCCCeEEEEeeeeecc-cccccccCCCCeeEEEEEEEe-eecCCCC------------CCCCCCCccccccCC-CCCCHH
Q 021511 34 ESSNLFREYIGAEFNN-VKFTDVPINSNVEFHYILSFA-IDYDTSS------------SPSPTNGKFNVFWDT-GNLSPS 98 (311)
Q Consensus 34 ~~~~vv~~Y~~~~~~~-~~~~~~~i~~~~~Thii~~fa-~~~~~~~------------~~~~~~~~~~~~~~~-~~~~~~ 98 (311)
.+.|+|+||.+|+... ..+.+-+|+...+|||+|+|+ +..++.. ......+..-++|.+ -.+.+.
T Consensus 36 ~~~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G~~~ 115 (441)
T COG3325 36 DQFKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGHFG 115 (441)
T ss_pred CCceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccchHH
Confidence 4566777777886543 478888899999999999999 8877742 011112223344543 345688
Q ss_pred HHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC-----------CCh
Q 021511 99 QVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ-----------ADP 167 (311)
Q Consensus 99 ~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~-----------~d~ 167 (311)
.+..+|+++|++|+++|||||+.+..| ++.+...+.|++|+.++++|+++|+|||||||||||. .+.
T Consensus 116 ~L~~lk~~~~d~k~l~SIGGWs~S~~F--~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d~ 193 (441)
T COG3325 116 ALFDLKATYPDLKTLISIGGWSDSGGF--SDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKDK 193 (441)
T ss_pred HHHHHhhhCCCceEEEeecccccCCCc--chhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcccH
Confidence 999999999999999999999999864 4555667788899999999999999999999999993 467
Q ss_pred hhHHHHHHHHHHHHhhCC------C-eEEEEeCCCCCchhhhhHHHHHHhhCCeeeEEEecccCCCCCCC----------
Q 021511 168 NTFAECIGRLIKTLKKNG------A-ISFASIAPYDDDQVQSHYLALWKSYGDLIDYVNFQFYAYAQGTS---------- 230 (311)
Q Consensus 168 ~~~~~~l~~Lr~~l~~~~------~-~~~a~~~p~~~~~~~~~y~~~~~~~~d~id~~~~~~y~~~~~~~---------- 230 (311)
++|+.||+|||++|.+.+ + |++|+.+. . ......-..++++++|+|++|+||+|+.|..+.
T Consensus 194 ~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~~as-~-~~l~~~~~~~~~~~vDyiNiMTYDf~G~Wn~~~Gh~a~Ly~~~ 271 (441)
T COG3325 194 ANYVLLLQELRKKLDKAGVEDGRHYQLTIAAPAS-K-DKLEGLNHAEIAQYVDYINIMTYDFHGAWNETLGHHAALYGTP 271 (441)
T ss_pred HHHHHHHHHHHHHHhhcccccCceEEEEEecCCc-h-hhhhcccHHHHHHHHhhhheeeeecccccccccccccccccCC
Confidence 899999999999998753 3 44443222 1 112211146679999999999999998553220
Q ss_pred -----------HHHHHHH--HHH--hhcCCCCCcEEEceecCC
Q 021511 231 -----------VSQFMDY--FKT--QSSNYKGGKVLVSFISDG 258 (311)
Q Consensus 231 -----------~~~~~~~--~~~--~~~~~p~~KivlG~p~~~ 258 (311)
.+..++. |.+ ...++|++||+||+|.|+
T Consensus 272 ~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~Yg 314 (441)
T COG3325 272 KDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYG 314 (441)
T ss_pred CCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccc
Confidence 1111221 222 234689999999999997
No 8
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=1.4e-38 Score=279.95 Aligned_cols=237 Identities=19% Similarity=0.182 Sum_probs=170.7
Q ss_pred eEEEEeeeeecccccccccCCCCeeEEEEEEEe-eecCCCCCCCCCCCccccccCCCCCCHHHHHHHHhhCCCcEEEEEE
Q 021511 38 LFREYIGAEFNNVKFTDVPINSNVEFHYILSFA-IDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALSL 116 (311)
Q Consensus 38 vv~~Y~~~~~~~~~~~~~~i~~~~~Thii~~fa-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~~~~g~kvllsi 116 (311)
|+|||..|+... ....+++..+||||+|+|+ ++.+|.+... + ........+..+|+ +|+||++||
T Consensus 1 vigyy~~w~~~~--~~~~~~~~~~lThv~~~f~~i~~~G~l~~~-------~---~~~~~~~~~~~~~~--~~~kvl~si 66 (253)
T cd06545 1 VVGYLPNYDDLN--ALSPTIDFSKLTHINLAFANPDANGTLNAN-------P---VRSELNSVVNAAHA--HNVKILISL 66 (253)
T ss_pred CEEEeCCccccc--CCcccCChhhCCeEEEEEEEECCCCeEEec-------C---cHHHHHHHHHHHHh--CCCEEEEEE
Confidence 577777786532 2455677889999999999 6666665211 0 00001233445555 689999999
Q ss_pred CCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhCCCeEEEEeCCCC
Q 021511 117 GGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYD 196 (311)
Q Consensus 117 GG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~ 196 (311)
||+..+.. ....+.++.|++|++++++++++|+|||||||||+|..++++|..|+++||++|++.++++++++++..
T Consensus 67 gg~~~~~~---~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~Lr~~l~~~~~~lt~av~~~~ 143 (253)
T cd06545 67 AGGSPPEF---TAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVTFGDYLVFIRALYAALKKEGKLLTAAVSSWN 143 (253)
T ss_pred cCCCCCcc---hhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCccHhHHHHHHHHHHHHHhhcCcEEEEEccCcc
Confidence 99876531 223344556778999999999999999999999999766789999999999999988888888776543
Q ss_pred CchhhhhHHHHHHhhCCeeeEEEecccCCCC------CCC---HHHHHHHHHHhhcCC-CCCcEEEceecCC-CCCCCCh
Q 021511 197 DDQVQSHYLALWKSYGDLIDYVNFQFYAYAQ------GTS---VSQFMDYFKTQSSNY-KGGKVLVSFISDG-SGGLAPG 265 (311)
Q Consensus 197 ~~~~~~~y~~~~~~~~d~id~~~~~~y~~~~------~~~---~~~~~~~~~~~~~~~-p~~KivlG~p~~~-~~g~~~~ 265 (311)
. ..+...+.+++|+|++|+||+++.+. ..+ .+..+++|.. .|+ |++||+||+|+|| .+.+...
T Consensus 144 ~----~~~~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~~~~~~v~~~~~--~g~ip~~KlvlGlp~YG~~w~~~~~ 217 (253)
T cd06545 144 G----GAVSDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYDDAVNDLNYWNE--RGLASKDKLVLGLPFYGYGFYYNGI 217 (253)
T ss_pred c----ccccHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchHhHHHHHHHHHH--cCCCCHHHEEEEeCCccccccCCCH
Confidence 2 11345567789999999999886442 111 2334444444 366 9999999999999 5666665
Q ss_pred hhHHHHHHHHhcCCCCCeEEEEeeeCCCCCCcee
Q 021511 266 DGFFTACSRLKSQKQLHGIFVWSADDSKKNGFRY 299 (311)
Q Consensus 266 ~~~~~~~~~~~~~~~~~Gvm~W~~~~d~~~~~~~ 299 (311)
.+....++..+++ +||+|+|++..|..+..+.
T Consensus 218 ~~~~~~~~~~~~~--~gG~~~w~~~~d~~~~~~l 249 (253)
T cd06545 218 PTIRNKVAFAKQN--YGGVMIWELSQDASGENSL 249 (253)
T ss_pred HHHHHHHHHHHHh--cCeEEEEeccCCCCCCcch
Confidence 6666667777766 9999999999999776543
No 9
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=1.5e-38 Score=293.95 Aligned_cols=210 Identities=19% Similarity=0.313 Sum_probs=159.6
Q ss_pred eEEEEeeeeecc---cccccccCCCCeeEEEEEEEe-eecCCCCCCCCCCCcccccc-CCCCCCHHHHHHHHhhCCCcEE
Q 021511 38 LFREYIGAEFNN---VKFTDVPINSNVEFHYILSFA-IDYDTSSSPSPTNGKFNVFW-DTGNLSPSQVSAIKNRHSNVKV 112 (311)
Q Consensus 38 vv~~Y~~~~~~~---~~~~~~~i~~~~~Thii~~fa-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~lk~~~~g~kv 112 (311)
|||||.+|...+ ..+.+.+++.++||||+|+|+ ++.+|.+.. . ..+ +......+++..+|+++|++||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~~~------~-~~~~d~~~~~~~~~~~lk~~~p~lkv 73 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIII------L-DEWNDIDLGLYERFNALKEKNPNLKT 73 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCEEe------c-CchhhhhhhHHHHHHHHHhhCCCceE
Confidence 578888775443 468888899999999999999 777665521 1 111 1122347888899999999999
Q ss_pred EEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC------CChhhHHHHHHHHHHHHhhC--
Q 021511 113 ALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ------ADPNTFAECIGRLIKTLKKN-- 184 (311)
Q Consensus 113 llsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~------~d~~~~~~~l~~Lr~~l~~~-- 184 (311)
++|||||+.+... +....+.++.|++|++++++++++|+|||||||||+|. +|+++|+.||++||++|++.
T Consensus 74 lisiGG~~~~~~~-f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~~ 152 (362)
T cd02872 74 LLAIGGWNFGSAK-FSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEAP 152 (362)
T ss_pred EEEEcCCCCCcch-hHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 9999999865421 12233444556789999999999999999999999985 46789999999999999988
Q ss_pred CCeEEEEeCCCCCchhhhhH-HHHHHhhCCeeeEEEecccCCCCC--------------------CCHHHHHHHHHHhhc
Q 021511 185 GAISFASIAPYDDDQVQSHY-LALWKSYGDLIDYVNFQFYAYAQG--------------------TSVSQFMDYFKTQSS 243 (311)
Q Consensus 185 ~~~~~a~~~p~~~~~~~~~y-~~~~~~~~d~id~~~~~~y~~~~~--------------------~~~~~~~~~~~~~~~ 243 (311)
++++++++++... .....| .+.+.+++|+|++|+||+|+.+.. .+++..+++|.+.
T Consensus 153 ~~~ls~av~~~~~-~~~~~~d~~~l~~~vD~v~vmtYD~~~~~~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~-- 229 (362)
T cd02872 153 RLLLTAAVSAGKE-TIDAAYDIPEISKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSK-- 229 (362)
T ss_pred CeEEEEEecCChH-HHhhcCCHHHHhhhcceEEEecccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHc--
Confidence 7888887766432 122345 577889999999999999964310 1366677777664
Q ss_pred CCCCCcEEEceecCC
Q 021511 244 NYKGGKVLVSFISDG 258 (311)
Q Consensus 244 ~~p~~KivlG~p~~~ 258 (311)
|+|++||+||+|+||
T Consensus 230 gvp~~KlvlGlp~YG 244 (362)
T cd02872 230 GAPPEKLVLGIPTYG 244 (362)
T ss_pred CCCHHHeEecccccc
Confidence 899999999999998
No 10
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=2.5e-37 Score=283.10 Aligned_cols=201 Identities=19% Similarity=0.234 Sum_probs=145.4
Q ss_pred CeEEEEeeeeecc--cccccccCCCCeeEEEEEEEe-eecCCCCCCCCCCCccccccCCCCCCHHHHHHHHhhCCCcEEE
Q 021511 37 NLFREYIGAEFNN--VKFTDVPINSNVEFHYILSFA-IDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVA 113 (311)
Q Consensus 37 ~vv~~Y~~~~~~~--~~~~~~~i~~~~~Thii~~fa-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~~~~g~kvl 113 (311)
|+||||..|...+ ..+.+.+|+..+||||+|+|+ ++.++.+.. .+......++.++| ++|||
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g~l~~-----------~~~~~~~~~~~~~k----~lkvl 65 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDFSVDV-----------SSVQEQFSDFKKLK----GVKKI 65 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCCeEee-----------cccHHHHHHHHhhc----CcEEE
Confidence 5788888875533 357778899999999999999 766665521 11111133343333 49999
Q ss_pred EEECCCCCCCCc----eecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC------------CChhhHHHHHHHH
Q 021511 114 LSLGGDSVSSGK----VYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ------------ADPNTFAECIGRL 177 (311)
Q Consensus 114 lsiGG~~~~~~~----~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~------------~d~~~~~~~l~~L 177 (311)
||||||+.+... .++..+ .++.|++|++++++++++|||||||||||+|. +|+++|+.||+||
T Consensus 66 lsiGG~~~s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~el 144 (345)
T cd02878 66 LSFGGWDFSTSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLL 144 (345)
T ss_pred EEEeCCCCCCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHH
Confidence 999999876431 112233 56677899999999999999999999999983 3678999999999
Q ss_pred HHHHhhCCCeEEEEeCCCCCchhhhhH-HHHHHhhCCeeeEEEecccCCCCCC---------------------CHHHHH
Q 021511 178 IKTLKKNGAISFASIAPYDDDQVQSHY-LALWKSYGDLIDYVNFQFYAYAQGT---------------------SVSQFM 235 (311)
Q Consensus 178 r~~l~~~~~~~~a~~~p~~~~~~~~~y-~~~~~~~~d~id~~~~~~y~~~~~~---------------------~~~~~~ 235 (311)
|++|++ ++++++++++... ....| .+.+.+++|+|++|+||+|+.|... +.+..+
T Consensus 145 r~~l~~-~~~ls~a~~~~~~--~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~~~~~~p~~p~~~~~~~~~~~~~~~~~v 221 (345)
T cd02878 145 KSKLPS-GKSLSIAAPASYW--YLKGFPIKDMAKYVDYIVYMTYDLHGQWDYGNKWASPGCPAGNCLRSHVNKTETLDAL 221 (345)
T ss_pred HHHhCc-CcEEEEEcCCChh--hhcCCcHHHHHhhCcEEEEEeecccCCcCccCCcCCCCCCcccccccCCCchhHHHHH
Confidence 999987 5666666554321 22235 4778999999999999999754211 133455
Q ss_pred HHHHHhhcCCCCCcEEEceecCC
Q 021511 236 DYFKTQSSNYKGGKVLVSFISDG 258 (311)
Q Consensus 236 ~~~~~~~~~~p~~KivlG~p~~~ 258 (311)
+.|.+ .|+|++||+||+|+||
T Consensus 222 ~~~~~--~Gvp~~KlvlGip~YG 242 (345)
T cd02878 222 SMITK--AGVPSNKVVVGVASYG 242 (345)
T ss_pred HHHHH--cCCCHHHeEEeecccc
Confidence 55654 4999999999999998
No 11
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=9e-35 Score=266.11 Aligned_cols=209 Identities=23% Similarity=0.312 Sum_probs=157.3
Q ss_pred CeEEEEeeeeecccccccccCCCCeeEEEEEEEe-eecCCCCCCCCCCCccccccCCCCCCHHHHHHHHhhCCCcEEEEE
Q 021511 37 NLFREYIGAEFNNVKFTDVPINSNVEFHYILSFA-IDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALS 115 (311)
Q Consensus 37 ~vv~~Y~~~~~~~~~~~~~~i~~~~~Thii~~fa-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~~~~g~kvlls 115 (311)
+++|||.+|...+..+.+..++..+||||+|+|+ ++.+|.+.. ...+.+ ......++.+|+++|++|||+|
T Consensus 1 ~~~~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~~~~~~g~~~~-------~~~~~~-~~~~~~~~~l~~~~~~~kvl~s 72 (334)
T smart00636 1 RVVGYFTNWGVYGRNFPVDDIPASKLTHIIYAFANIDPDGTVTI-------GDEWAD-IGNFGQLKALKKKNPGLKVLLS 72 (334)
T ss_pred CEEEEECchhccCCCCChhHCCcccCcEEEEeeeeeCCCCCEee-------CCcchh-hhhHHHHHHHHHhCCCCEEEEE
Confidence 5788888886544457777888889999999999 776665521 111111 0135678899999999999999
Q ss_pred ECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC---CChhhHHHHHHHHHHHHhhC-----CCe
Q 021511 116 LGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ---ADPNTFAECIGRLIKTLKKN-----GAI 187 (311)
Q Consensus 116 iGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~---~d~~~~~~~l~~Lr~~l~~~-----~~~ 187 (311)
||||+.+..+ ....+.++.|++|++++++++++|+|||||||||+|. +++++|+.|+++||++|++. +++
T Consensus 73 vgg~~~s~~f--~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~~~~ 150 (334)
T smart00636 73 IGGWTESDNF--SSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGAEGKGYL 150 (334)
T ss_pred EeCCCCCcch--hHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhcccCCceE
Confidence 9999875332 2333445667789999999999999999999999985 46789999999999999863 677
Q ss_pred EEEEeCCCCCchhhhhH--HHHHHhhCCeeeEEEecccCCCCC-----C------------CHHHHHHHHHHhhcCCCCC
Q 021511 188 SFASIAPYDDDQVQSHY--LALWKSYGDLIDYVNFQFYAYAQG-----T------------SVSQFMDYFKTQSSNYKGG 248 (311)
Q Consensus 188 ~~a~~~p~~~~~~~~~y--~~~~~~~~d~id~~~~~~y~~~~~-----~------------~~~~~~~~~~~~~~~~p~~ 248 (311)
+++++++.... ....| .+.+.+++|+|++|+||+|+.+.. . +++..++.|.. .|+|++
T Consensus 151 lsi~v~~~~~~-~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~~~~g~~spl~~~~~~~~~~~v~~~v~~~~~--~gvp~~ 227 (334)
T smart00636 151 LTIAVPAGPDK-IDKGYGDLPAIAKYLDFINLMTYDFHGAWSNPTGHNAPLYAGPGDPEKYNVDYAVKYYLC--KGVPPS 227 (334)
T ss_pred EEEEecCChHH-HHhhhhhHHHHHhhCcEEEEeeeccCCCCCCCCCCCCcCCCCCCCCCCccHHHHHHHHHH--cCCCHH
Confidence 77777664321 22223 377899999999999999974321 1 35666777765 489999
Q ss_pred cEEEceecCC
Q 021511 249 KVLVSFISDG 258 (311)
Q Consensus 249 KivlG~p~~~ 258 (311)
||+||+|+||
T Consensus 228 KlvlGip~YG 237 (334)
T smart00636 228 KLVLGIPFYG 237 (334)
T ss_pred HeEEeecccc
Confidence 9999999998
No 12
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.4e-34 Score=266.63 Aligned_cols=213 Identities=20% Similarity=0.240 Sum_probs=155.1
Q ss_pred CCCCeEEEEeeeeecc--c-ccccccCCCCeeEEEEEEEe-eecCCCCCCCCCCCccccccCCCCCCHHHHHHHHhhCCC
Q 021511 34 ESSNLFREYIGAEFNN--V-KFTDVPINSNVEFHYILSFA-IDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSN 109 (311)
Q Consensus 34 ~~~~vv~~Y~~~~~~~--~-~~~~~~i~~~~~Thii~~fa-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~~~~g 109 (311)
.....+|++..|.+.+ . ......++..+|||++|+|+ ++.++... +.... ..+...+..+.+|+++|+
T Consensus 50 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~-------~~~~~-~~~~f~~~~~~~k~~n~~ 121 (432)
T KOG2806|consen 50 TAQNTVCEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVV-------FCGAR-TMNRFSSYNQTAKSSNPT 121 (432)
T ss_pred cCccccccceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEE-------eccch-hhhhhHHHHHHHHhhCCC
Confidence 3455666665443322 2 34455567779999999999 77777652 11111 122346677888989999
Q ss_pred cEEEEEECCCC-CCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCC--C-CChhhHHHHHHHHHHHHhhCC
Q 021511 110 VKVALSLGGDS-VSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHF--Q-ADPNTFAECIGRLIKTLKKNG 185 (311)
Q Consensus 110 ~kvllsiGG~~-~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~--~-~d~~~~~~~l~~Lr~~l~~~~ 185 (311)
+|+|+|||||. .+.. +....+..+.|++||+|+++++++|+|||||||||+| . .|+.+|..|++|||++|.++.
T Consensus 122 vK~llSIGG~~~ns~~--fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~~ 199 (432)
T KOG2806|consen 122 VKVMISIGGSHGNSGL--FSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARET 199 (432)
T ss_pred ceEEEEecCCCCCccc--hhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999994 3433 3344556666779999999999999999999999999 3 578999999999999998753
Q ss_pred C-------eEEEEeCCCCCchhhhhH-HHHHHhhCCeeeEEEecccCCCCC--------------------CCHHHHHHH
Q 021511 186 A-------ISFASIAPYDDDQVQSHY-LALWKSYGDLIDYVNFQFYAYAQG--------------------TSVSQFMDY 237 (311)
Q Consensus 186 ~-------~~~a~~~p~~~~~~~~~y-~~~~~~~~d~id~~~~~~y~~~~~--------------------~~~~~~~~~ 237 (311)
. ++++++.+.........| .+.+.+++|+|++|+||+|++|.. .+++..+++
T Consensus 200 ~~~~~~~~~l~~~v~~~~~~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ky 279 (432)
T KOG2806|consen 200 LKSPDTAKVLEAVVADSKQSAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLKY 279 (432)
T ss_pred hccCCccceeeeccccCccchhhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHHH
Confidence 1 344444433211234456 688999999999999999985543 146777888
Q ss_pred HHHhhcCCCCCcEEEceecCC
Q 021511 238 FKTQSSNYKGGKVLVSFISDG 258 (311)
Q Consensus 238 ~~~~~~~~p~~KivlG~p~~~ 258 (311)
|.+. +.|++|++||+|+|+
T Consensus 280 ~~~~--~~~~~Kl~~gip~yg 298 (432)
T KOG2806|consen 280 WTEK--GLPPSKLVLALPFYG 298 (432)
T ss_pred Hhhc--CCCchheEEEEecce
Confidence 8776 679999999999998
No 13
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=100.00 E-value=3.8e-33 Score=246.35 Aligned_cols=247 Identities=19% Similarity=0.214 Sum_probs=166.4
Q ss_pred EEEEeeeeecccccccccCCCCeeEEEEEEEe-eecCCCCCCCCCCCccccccC-CCCCCHHHHHHHHhhCCCcEEEEEE
Q 021511 39 FREYIGAEFNNVKFTDVPINSNVEFHYILSFA-IDYDTSSSPSPTNGKFNVFWD-TGNLSPSQVSAIKNRHSNVKVALSL 116 (311)
Q Consensus 39 v~~Y~~~~~~~~~~~~~~i~~~~~Thii~~fa-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~lk~~~~g~kvllsi 116 (311)
|+.||+.+....+++..+-+. .++-|+++|+ .-.+++.......+....... ......++|+.|++ +|+||||||
T Consensus 3 v~vyWGq~~~~~~L~~~C~~~-~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~--~G~KVlLSI 79 (280)
T cd02877 3 IAVYWGQNSDEGSLREYCDTG-NYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQS--KGKKVLLSI 79 (280)
T ss_pred eEEECCCCCCCCCHHHHhCCC-CccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHH--CCCEEEEEc
Confidence 678898666667777655443 5678899998 333322211111222211100 12234678888888 899999999
Q ss_pred CCCCCCCCceecCCCchhHHHHHHHHHHHHHH------------HHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhC
Q 021511 117 GGDSVSSGKVYFNPSSVDTWVSNAVASLTSII------------KEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKN 184 (311)
Q Consensus 117 GG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~------------~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~ 184 (311)
|||+.+..+ +.++-|++|+++|.++. .+++|||||||||+|.. .+|..|+++||+.+++.
T Consensus 80 GG~~~~~~~------~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~--~~~~~l~~~LR~~~~~~ 151 (280)
T cd02877 80 GGAGGSYSL------SSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP--ENYDALAKRLRSLFASD 151 (280)
T ss_pred cCCCCCcCC------CCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCc--cCHHHHHHHHHHHhhcc
Confidence 999876432 22344557888877664 35779999999999864 68999999999999763
Q ss_pred ---CCeE-EEEeCCCCCchhhhhHH-HHHHhhCCeeeEEEecccCCCCCC----CHHHHHHHHHHhhcCCCC---CcEEE
Q 021511 185 ---GAIS-FASIAPYDDDQVQSHYL-ALWKSYGDLIDYVNFQFYAYAQGT----SVSQFMDYFKTQSSNYKG---GKVLV 252 (311)
Q Consensus 185 ---~~~~-~a~~~p~~~~~~~~~y~-~~~~~~~d~id~~~~~~y~~~~~~----~~~~~~~~~~~~~~~~p~---~Kivl 252 (311)
.+++ .|+++|..+ .|. ..+. .+.+|++++|+|+.+.-. ........|..+...++. .||+|
T Consensus 152 ~~~~~~LTaAPq~~~~d-----~~~~~~i~--~~~~D~i~vqfYn~~~c~~~~~~~~~~~~~~~~w~~~~~~~~~~kv~l 224 (280)
T cd02877 152 PSKKYYLTAAPQCPYPD-----ASLGDAIA--TGLFDFIFVQFYNNPCCSYASGNASGFNFNWDTWTSWAKATSNAKVFL 224 (280)
T ss_pred cCCceEEEeccccCCcc-----hhHHHHHc--cCccCEEEEEEecCccccccccccchhhhHHHHHHHhcccCCCceEEE
Confidence 3444 444554432 132 2222 268999999999754321 112222334444444565 89999
Q ss_pred ceecCC---CCCCCChhhHHHHHHHHhcCC-CCCeEEEEeeeCCCCCCceechhHH
Q 021511 253 SFISDG---SGGLAPGDGFFTACSRLKSQK-QLHGIFVWSADDSKKNGFRYEKQSQ 304 (311)
Q Consensus 253 G~p~~~---~~g~~~~~~~~~~~~~~~~~~-~~~Gvm~W~~~~d~~~~~~~~~~~~ 304 (311)
|+|+.+ .+||++++.+...+..++.+. ++||||+|++++|.. +-.|.+.|+
T Consensus 225 Glpas~~aa~~Gyv~p~~l~~~v~~~~~~~~~fGGvM~Wd~~~~~~-~~~y~~~i~ 279 (280)
T cd02877 225 GLPASPEAAGSGYVDPSELASLVLPVKQKSPNFGGVMLWDASQDKQ-GTGYSSKIK 279 (280)
T ss_pred ecccCCCCCCCCccCHHHHHHHHHHHhhcCCCCcEEEEEhHhhccC-CCCHHHHhc
Confidence 999997 689999999999999998874 999999999999998 335777765
No 14
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=8.5e-33 Score=251.01 Aligned_cols=207 Identities=12% Similarity=0.122 Sum_probs=150.0
Q ss_pred CeEEEEeeeeecccccccccCCCCeeEEEEEEEe-eecCCCCCCCCCCCccccccCCCCCCHHHHHHHHhhCCCcEEE--
Q 021511 37 NLFREYIGAEFNNVKFTDVPINSNVEFHYILSFA-IDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVA-- 113 (311)
Q Consensus 37 ~vv~~Y~~~~~~~~~~~~~~i~~~~~Thii~~fa-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~~~~g~kvl-- 113 (311)
+++|||.+|... .+....++..+||||+|+|+ +..+++... ... ........+..+|+++|++||+
T Consensus 4 ~~~~y~~~W~~~--~~~~~~~~~~~lthv~~~f~~i~~~g~~~~------~~~---~~~~~~~~~~~lk~~~~~lkvlp~ 72 (318)
T cd02876 4 PVLGYVTPWNSH--GYDVAKKFAAKFTHVSPVWLQIKRKGNKFV------IEG---THDIDKGWIEEVRKANKNIKILPR 72 (318)
T ss_pred ceEEEEcCcCcc--chHHHHHHhccCCEecceEEEEecCCCeee------eec---CcchhhHHHHHHHhhCCCcEEEeE
Confidence 477888788543 34445566678999999999 766654310 000 0001134677899999999999
Q ss_pred EEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEee-cCCCC-----CChhhHHHHHHHHHHHHhhCCCe
Q 021511 114 LSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDID-YEHFQ-----ADPNTFAECIGRLIKTLKKNGAI 187 (311)
Q Consensus 114 lsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD-~E~~~-----~d~~~~~~~l~~Lr~~l~~~~~~ 187 (311)
+++|||+.+. +....+.++.|++|++++++++++||||||||| ||+|. +++++|+.||+|||++|+++++.
T Consensus 73 i~~gg~~~~~---f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~~~~~ 149 (318)
T cd02876 73 VLFEGWSYQD---LQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHSANLK 149 (318)
T ss_pred EEECCCCHHH---HHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhhcCCE
Confidence 7779997642 233445566677999999999999999999999 99984 37799999999999999998888
Q ss_pred EEEEeCCCCCc----hhhhhH-HHHHHhhCCeeeEEEecccCC---CCCC---CHHHHHHHHHHhhcCCCCCcEEEceec
Q 021511 188 SFASIAPYDDD----QVQSHY-LALWKSYGDLIDYVNFQFYAY---AQGT---SVSQFMDYFKTQSSNYKGGKVLVSFIS 256 (311)
Q Consensus 188 ~~a~~~p~~~~----~~~~~y-~~~~~~~~d~id~~~~~~y~~---~~~~---~~~~~~~~~~~~~~~~p~~KivlG~p~ 256 (311)
++++++|.... .....| .+.+.+++|+|++|+||+|+. ++.. .++..++++... .|+|++||+||+|+
T Consensus 150 l~~~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~~g~~apl~~v~~~v~~~~~~-~~vp~~KlvlGip~ 228 (318)
T cd02876 150 LILVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSPQRPGPNAPLSWVRSCLELLLPE-SGKKRAKILLGLNF 228 (318)
T ss_pred EEEEEcCccccccccccccccCHHHHHhhccEEEEEeeccCCCCCCCCCCCcHHHHHHHHHHHhc-CCCCHHHeEEeccc
Confidence 88877664421 011234 577899999999999999874 1111 244555666543 13999999999999
Q ss_pred CC
Q 021511 257 DG 258 (311)
Q Consensus 257 ~~ 258 (311)
||
T Consensus 229 YG 230 (318)
T cd02876 229 YG 230 (318)
T ss_pred cc
Confidence 99
No 15
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=5.1e-32 Score=231.86 Aligned_cols=205 Identities=23% Similarity=0.277 Sum_probs=144.1
Q ss_pred eEEEEeeeeecccccccccCCCCeeEEEEEEEe-eecCCCCCCCCCCCccccccCCCCCCHHHHHHHHhhCCCcEEEEEE
Q 021511 38 LFREYIGAEFNNVKFTDVPINSNVEFHYILSFA-IDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALSL 116 (311)
Q Consensus 38 vv~~Y~~~~~~~~~~~~~~i~~~~~Thii~~fa-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~~~~g~kvllsi 116 (311)
++|||.+|+..+... +..++..+||||+|+|+ ++.++.... +.+ .......+.++.+++++||+||++||
T Consensus 1 vv~y~~~w~~~~~~~-~~~~~~~~~thvi~~f~~v~~~~~~~~-~~~-------~~~~~~~~~i~~l~~~~~g~kv~~si 71 (210)
T cd00598 1 VICYYDGWSSGRGPD-PTDIPLSLCTHIIYAFAEISSDGSLNL-FGD-------KSEEPLKGALEELASKKPGLKVLISI 71 (210)
T ss_pred CEEEEccccccCCCC-hhhCCcccCCEEEEeeEEECCCCCEec-ccC-------cccHHHHHHHHHHHHhCCCCEEEEEE
Confidence 578888887655432 45567779999999999 666655411 000 11112357788898887899999999
Q ss_pred CCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCCC----hhhHHHHHHHHHHHHhhCCCeEEEEe
Q 021511 117 GGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQAD----PNTFAECIGRLIKTLKKNGAISFASI 192 (311)
Q Consensus 117 GG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~d----~~~~~~~l~~Lr~~l~~~~~~~~a~~ 192 (311)
||+.....+ ...+..+.|++|++++++++++|+|||||||||+|... +++|+.|+++||++|+++++++++++
T Consensus 72 gg~~~~~~~---~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~~ls~a~ 148 (210)
T cd00598 72 GGWTDSSPF---TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANYLLTIAV 148 (210)
T ss_pred cCCCCCCCc---hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCcEEEEEe
Confidence 999877532 23345556778999999999999999999999999542 69999999999999998778777776
Q ss_pred CCCCCchhhhhHHHHHHhhCCeeeEEEecccCCCCCCCHHHHHHHHHHhhcCCCCCcEEEceecCCCCCCCChhhHHHHH
Q 021511 193 APYDDDQVQSHYLALWKSYGDLIDYVNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFISDGSGGLAPGDGFFTAC 272 (311)
Q Consensus 193 ~p~~~~~~~~~y~~~~~~~~d~id~~~~~~y~~~~~~~~~~~~~~~~~~~~~~p~~KivlG~p~~~~~g~~~~~~~~~~~ 272 (311)
++.... ....| .+.++.+++|++++|.|+ |++|+|++ .+...+
T Consensus 149 ~~~~~~-~~~~~--~~~~l~~~vD~v~vm~Yd-------------------------l~~g~~~~---------s~~~k~ 191 (210)
T cd00598 149 PASYFD-LGYAY--DVPAIGDYVDFVNVMTYD-------------------------LVLGVPFY---------SLGAKA 191 (210)
T ss_pred cCChHH-hhccC--CHHHHHhhCCEEEEeeec-------------------------ccccchhh---------hHHHHH
Confidence 664321 11113 123444455555555555 89999987 333344
Q ss_pred HHHhcCCCCCeEEEEeeeCC
Q 021511 273 SRLKSQKQLHGIFVWSADDS 292 (311)
Q Consensus 273 ~~~~~~~~~~Gvm~W~~~~d 292 (311)
+.++ +.++||+|+|+++.|
T Consensus 192 ~~~~-~~~~gGv~~w~~~~d 210 (210)
T cd00598 192 KYAK-QKGLGGVMIWELDQD 210 (210)
T ss_pred HHHH-HcCCceEEEEeccCC
Confidence 4444 448999999999876
No 16
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=6e-33 Score=254.81 Aligned_cols=213 Identities=23% Similarity=0.298 Sum_probs=151.0
Q ss_pred CeEEEEeeeeecccc-cccccCCCCeeEEEEEEEe-eecCCCCCCCCCCCccccccCCCCCCHHHHHHHHhhCCCcEEEE
Q 021511 37 NLFREYIGAEFNNVK-FTDVPINSNVEFHYILSFA-IDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVAL 114 (311)
Q Consensus 37 ~vv~~Y~~~~~~~~~-~~~~~i~~~~~Thii~~fa-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~~~~g~kvll 114 (311)
++||||.+|+..+.. +...+++...||||+|+|+ ++.++...... ......+......+.++.+|+++|++|||+
T Consensus 2 ~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~kvll 78 (343)
T PF00704_consen 2 RVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPW---NFDDDNDGDSSGFKNLKELKAKNPGVKVLL 78 (343)
T ss_dssp EEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGT---TTECSSTTHHHHHHHHHHHHHHHTT-EEEE
T ss_pred EEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceeccc---ccccccCccccchhHHHHHHhhccCceEEE
Confidence 577777788654444 6677777779999999999 77666541000 000111111223677888888889999999
Q ss_pred EECCCCCCC-CceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCC-----ChhhHHHHHHHHHHHHhhC----
Q 021511 115 SLGGDSVSS-GKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQA-----DPNTFAECIGRLIKTLKKN---- 184 (311)
Q Consensus 115 siGG~~~~~-~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~-----d~~~~~~~l~~Lr~~l~~~---- 184 (311)
||||+..+. .+ ....+.++.|++|+++|++++++|||||||||||++.. ++++|..||++||++|++.
T Consensus 79 sigg~~~~~~~~--~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~ 156 (343)
T PF00704_consen 79 SIGGWGMSSDGF--SQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRANRSG 156 (343)
T ss_dssp EEEETTSSHHHH--HHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Eecccccccccc--ccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhccccccc
Confidence 999997664 22 22233456677999999999999999999999999954 6799999999999999984
Q ss_pred -CCeEEEEeCCCCCchhhhhH-HHHHHhhCCeeeEEEecccCCCCC-----------------CCHHHHHHHHHHhhcCC
Q 021511 185 -GAISFASIAPYDDDQVQSHY-LALWKSYGDLIDYVNFQFYAYAQG-----------------TSVSQFMDYFKTQSSNY 245 (311)
Q Consensus 185 -~~~~~a~~~p~~~~~~~~~y-~~~~~~~~d~id~~~~~~y~~~~~-----------------~~~~~~~~~~~~~~~~~ 245 (311)
++++++++++... ....+ .+.+.+++|+|.+|+|++|+.+.. .+.+..++.|... |+
T Consensus 157 ~~~~ls~a~p~~~~--~~~~~~~~~l~~~vD~v~~m~yD~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~--g~ 232 (343)
T PF00704_consen 157 KGYILSVAVPPSPD--YYDKYDYKELAQYVDYVNLMTYDYHGPWSDVTGPNAPLYDSSWDSNYYSVDSAVQYWIKA--GV 232 (343)
T ss_dssp STSEEEEEEECSHH--HHTTHHHHHHHTTSSEEEEETTSSSSTTSSBETTSSSSSHTTTSGTSSSHHHHHHHHHHT--TS
T ss_pred ceeEEeeccccccc--cccccccccccccccccccccccCCCCcccccccccccccCCccCCCceeeeehhhhccc--cC
Confidence 7877777665322 22223 466677888888888888863211 1345567777665 79
Q ss_pred CCCcEEEceecCC
Q 021511 246 KGGKVLVSFISDG 258 (311)
Q Consensus 246 p~~KivlG~p~~~ 258 (311)
|++||+||+|.++
T Consensus 233 p~~Kl~lglp~yg 245 (343)
T PF00704_consen 233 PPSKLVLGLPFYG 245 (343)
T ss_dssp TGGGEEEEEESEE
T ss_pred ChhheeecCCccc
Confidence 9999999999997
No 17
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=99.96 E-value=8.5e-29 Score=224.53 Aligned_cols=201 Identities=15% Similarity=0.194 Sum_probs=138.6
Q ss_pred CeEEEEeeeeecccccccccCCCCeeEEEEEEEe-eecCCCCCCCCCCCccccccCCCCCCHHHHHHHHhhCCCcEEEEE
Q 021511 37 NLFREYIGAEFNNVKFTDVPINSNVEFHYILSFA-IDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALS 115 (311)
Q Consensus 37 ~vv~~Y~~~~~~~~~~~~~~i~~~~~Thii~~fa-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~~~~g~kvlls 115 (311)
+++++|.+|...........++ ++|||+.... +.++|.+. +. ...+.++.+|+ .++||+++
T Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~--~lt~v~p~w~~~~~~g~~~-----~~---------~~~~~~~~a~~--~~~kv~~~ 64 (313)
T cd02874 3 EVLGYYTPRNGSDYESLRANAP--YLTYIAPFWYGVDADGTLT-----GL---------PDERLIEAAKR--RGVKPLLV 64 (313)
T ss_pred eEEEEEecCCCchHHHHHHhcC--CCCEEEEEEEEEcCCCCCC-----CC---------CCHHHHHHHHH--CCCeEEEE
Confidence 4677887775543222223333 7899987766 76666541 10 11344555555 48999999
Q ss_pred ECCCCCCCC--ceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC-CChhhHHHHHHHHHHHHhhCCCeEEEEe
Q 021511 116 LGGDSVSSG--KVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ-ADPNTFAECIGRLIKTLKKNGAISFASI 192 (311)
Q Consensus 116 iGG~~~~~~--~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~-~d~~~~~~~l~~Lr~~l~~~~~~~~a~~ 192 (311)
|||+..+.. .......+.++.|++|++++++++++|||||||||||++. +++++|+.||++||++|+++++++++++
T Consensus 65 i~~~~~~~~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~~~~~~lsv~~ 144 (313)
T cd02874 65 ITNLTNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLHPAGYTLSTAV 144 (313)
T ss_pred EecCCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhhhcCcEEEEEe
Confidence 999873210 0112223445667789999999999999999999999985 6789999999999999998888777766
Q ss_pred CCCCCch----hhhhH-HHHHHhhCCeeeEEEecccCCCCCC----C---HHHHHHHHHHhhcCCCCCcEEEceecCC
Q 021511 193 APYDDDQ----VQSHY-LALWKSYGDLIDYVNFQFYAYAQGT----S---VSQFMDYFKTQSSNYKGGKVLVSFISDG 258 (311)
Q Consensus 193 ~p~~~~~----~~~~y-~~~~~~~~d~id~~~~~~y~~~~~~----~---~~~~~~~~~~~~~~~p~~KivlG~p~~~ 258 (311)
.|..... ....| .+.+.+++|+|++|+||+|+.+... + .+..+++ ..+|+|++||+||+|+||
T Consensus 145 ~p~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~~~~gp~a~~~~~~~~~~~---~~~gvp~~KlvlGip~YG 219 (313)
T cd02874 145 VPKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRGGPPGPVAPIGWVERVLQY---AVTQIPREKILLGIPLYG 219 (313)
T ss_pred cCccccccccccccccCHHHHHhhCCEEEEEEeccCCCCCCCCccCChHHHHHHHHH---HHhcCCHHHEEEeecccc
Confidence 5543210 11234 4778899999999999999754322 1 1223333 336899999999999998
No 18
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.95 E-value=9.1e-27 Score=205.29 Aligned_cols=191 Identities=17% Similarity=0.194 Sum_probs=139.1
Q ss_pred HHHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCC--------Chh
Q 021511 97 PSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQA--------DPN 168 (311)
Q Consensus 97 ~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~--------d~~ 168 (311)
.+.++.+|+ +|+||++||||+.....+ .....++.|++|++++++++++|||||||||||++.. +++
T Consensus 54 ~~~i~~l~~--kG~KVl~sigg~~~~~~~---~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~ 128 (255)
T cd06542 54 ETYIRPLQA--KGTKVLLSILGNHLGAGF---ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNE 128 (255)
T ss_pred HHHHHHHhh--CCCEEEEEECCCCCCCCc---cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHH
Confidence 566777766 799999999999876543 1122334467899999999999999999999999843 568
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhhHHHHHHhhCCeeeEEEecccCCCCCCCHHHHHHHHHHhhcCCCCC
Q 021511 169 TFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGDLIDYVNFQFYAYAQGTSVSQFMDYFKTQSSNYKGG 248 (311)
Q Consensus 169 ~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~y~~~~~~~~d~id~~~~~~y~~~~~~~~~~~~~~~~~~~~~~p~~ 248 (311)
+|..|+++||+++++++++++++..|.... . ...+..+++|++++|+|+.+...... .|.....|+|++
T Consensus 129 ~~~~lv~~Lr~~~~~~~kllt~~~~~~~~~------~-~~~~~~~~vDyv~~~~y~~~~~~~~~----~~~~~~~g~~~~ 197 (255)
T cd06542 129 AFVRLIKELRKYMGPTDKLLTIDGYGQALS------N-DGEEVSPYVDYVIYQYYGSSSSSTQR----NWNTNSPKIPPE 197 (255)
T ss_pred HHHHHHHHHHHHhCcCCcEEEEEecCCchh------c-CHHHHHHhCCEEEeeccCCCCccCCc----ccccccCCCCHH
Confidence 999999999999987667776665553211 0 34667778888899999866544322 344455689999
Q ss_pred cEEEceecCCCCCCCChhhHHHHHHHHhcCCCCCeEEEEeeeCCCCCCceechhHHH
Q 021511 249 KVLVSFISDGSGGLAPGDGFFTACSRLKSQKQLHGIFVWSADDSKKNGFRYEKQSQA 305 (311)
Q Consensus 249 KivlG~p~~~~~g~~~~~~~~~~~~~~~~~~~~~Gvm~W~~~~d~~~~~~~~~~~~~ 305 (311)
|+++|++++...+..+...+.+..+.+...+..||+|+|.++.|.. +.+.+.+..
T Consensus 198 k~i~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~gG~~~y~~~~dy~--~~~~~~~~~ 252 (255)
T cd06542 198 KMVYTESFEEENGGNSGSSAEQYARWTPAKGGKGGIGTYALDRDYY--RPYDSAVSK 252 (255)
T ss_pred HceeeeeeecccCCCcchhHHHHHhcCcccCceEEEEEEecCCCcc--ccchhhhhh
Confidence 9999999987443344455555666666556899999999999864 455555443
No 19
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=99.95 E-value=4e-26 Score=209.61 Aligned_cols=149 Identities=15% Similarity=0.145 Sum_probs=107.5
Q ss_pred HHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC----CChhhHHHH
Q 021511 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ----ADPNTFAEC 173 (311)
Q Consensus 98 ~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~----~d~~~~~~~ 173 (311)
+.+...|+ +|+||+++ |+... ...+.++.|++|++++++++++|||||||||||+|. +|+++|+.|
T Consensus 68 ~~~~~A~~--~~v~v~~~-~~~~~-------~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~l 137 (358)
T cd02875 68 ELLCYAHS--KGVRLVLK-GDVPL-------EQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTEL 137 (358)
T ss_pred HHHHHHHH--cCCEEEEE-CccCH-------HHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHH
Confidence 44554555 79999987 32221 112344567789999999999999999999999994 468999999
Q ss_pred HHHHHHHHhhC--CCeEEEEeCCCCCchhhhhH-HHHHHhhCCeeeEEEecccCC-CC-------CC---CHHHHHHHHH
Q 021511 174 IGRLIKTLKKN--GAISFASIAPYDDDQVQSHY-LALWKSYGDLIDYVNFQFYAY-AQ-------GT---SVSQFMDYFK 239 (311)
Q Consensus 174 l~~Lr~~l~~~--~~~~~a~~~p~~~~~~~~~y-~~~~~~~~d~id~~~~~~y~~-~~-------~~---~~~~~~~~~~ 239 (311)
|+|||++|++. +++++++++..........| .+.+.+++|+|++|+||+|+. +. .. .++..++.|.
T Consensus 138 lkelr~~l~~~~~~~~Lsvav~~~p~~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~~v~~~v~~~~ 217 (358)
T cd02875 138 VKETTKAFKKENPGYQISFDVAWSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYSQTLSGYNNFT 217 (358)
T ss_pred HHHHHHHHhhcCCCcEEEEEEecCcccccccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCchhHHHHHHHHH
Confidence 99999999986 45666655432211112236 578899999999999999852 21 11 2344455565
Q ss_pred HhhcCCCCCcEEEceecCC
Q 021511 240 TQSSNYKGGKVLVSFISDG 258 (311)
Q Consensus 240 ~~~~~~p~~KivlG~p~~~ 258 (311)
. .|+|++||+||+|+||
T Consensus 218 ~--~gvp~~KLvLGip~YG 234 (358)
T cd02875 218 K--LGIDPKKLVMGLPWYG 234 (358)
T ss_pred H--cCCCHHHeEEEeCCCC
Confidence 4 4899999999999998
No 20
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=4.1e-27 Score=196.30 Aligned_cols=204 Identities=21% Similarity=0.322 Sum_probs=148.8
Q ss_pred CHHHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC----CChhhHH
Q 021511 96 SPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ----ADPNTFA 171 (311)
Q Consensus 96 ~~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~----~d~~~~~ 171 (311)
...++..|.+ .|.-|+||+||+... +.+.... + ++|+++|++++++|||||+|||.|... .++.-..
T Consensus 87 Fr~~v~aLna--eGkavllsLGGAdgh---IeL~~~q-E---~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p 157 (332)
T COG3469 87 FRAQVGALNA--EGKAVLLSLGGADGH---IELKAGQ-E---QAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIP 157 (332)
T ss_pred HHHHHHHhhc--cCcEEEEEccCccce---EEeccch-H---HHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehH
Confidence 3455666665 689999999999876 2333322 2 479999999999999999999999873 2334678
Q ss_pred HHHHHHHHHHhhCCCeEEEEeCCCCCch-hhhhHHHHHHhhCCeeeEEEecccCCCCCCCH-----------HH----HH
Q 021511 172 ECIGRLIKTLKKNGAISFASIAPYDDDQ-VQSHYLALWKSYGDLIDYVNFQFYAYAQGTSV-----------SQ----FM 235 (311)
Q Consensus 172 ~~l~~Lr~~l~~~~~~~~a~~~p~~~~~-~~~~y~~~~~~~~d~id~~~~~~y~~~~~~~~-----------~~----~~ 235 (311)
+.++.+|+..+..+.-..++++|..+.- ..+.|.+.+.++.|+.|+++.|+|+.+....+ +. ..
T Consensus 158 ~alk~vk~hyk~~Gk~f~itMAPEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGdg~w~~~~nawi~q~nd~~kesf 237 (332)
T COG3469 158 AALKAVKDHYKNQGKNFFITMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGDGNWVTESNAWIAQNNDMVKESF 237 (332)
T ss_pred HHHHHHHHHHHhcCCceEEEecCCCceecCCcccchHHHHHhhHHhhhhHHHhcCCCCCCCcCccccccccccHHHHHhH
Confidence 8899999888887776666666644211 25678899999999999999999976543211 11 11
Q ss_pred HHHHH--h---hcC---CCCCcEEEceecCC---CCCCCCh-hhHHHHHHHHhcC-CCCCeEEEEeeeCCC---CCCcee
Q 021511 236 DYFKT--Q---SSN---YKGGKVLVSFISDG---SGGLAPG-DGFFTACSRLKSQ-KQLHGIFVWSADDSK---KNGFRY 299 (311)
Q Consensus 236 ~~~~~--~---~~~---~p~~KivlG~p~~~---~~g~~~~-~~~~~~~~~~~~~-~~~~Gvm~W~~~~d~---~~~~~~ 299 (311)
-+|.. . .+| +|++|+++|+|... ..||++. ..+..+.+.++.. ..+.|+|+|+++||+ .+|++|
T Consensus 238 ly~~~~slanGtr~f~~ipa~k~aiGLPsn~daAatGyv~dpniv~n~~~rlka~g~~ikGvMTWSvNWD~g~n~~G~~y 317 (332)
T COG3469 238 LYYLTFSLANGTRGFEKIPADKFAIGLPSNVDAAATGYVKDPNIVDNAFNRLKATGCNIKGVMTWSVNWDAGKNSDGENY 317 (332)
T ss_pred HHHhhhhhhcCcccceecccceeEEecCCCcchhhcCcCCCHHHHHHHHHHhhccCCcccceEEEEEeccccCCcCchhc
Confidence 11211 1 122 58999999999997 6888875 5566677778766 589999999999999 678888
Q ss_pred chhHHHHHh
Q 021511 300 EKQSQALLA 308 (311)
Q Consensus 300 ~~~~~~~l~ 308 (311)
.....+.+.
T Consensus 318 n~~f~~~ya 326 (332)
T COG3469 318 NNPFGNKYA 326 (332)
T ss_pred cchhhhhhh
Confidence 877766543
No 21
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=99.95 E-value=2.2e-26 Score=206.83 Aligned_cols=202 Identities=12% Similarity=0.151 Sum_probs=136.5
Q ss_pred eEEEEeeeeecccccccccCCCCeeEEEEEE-Eeee-cCCCCCCCCCCCccccccCCCCCCHHHHHHHHhhCCCcEEEEE
Q 021511 38 LFREYIGAEFNNVKFTDVPINSNVEFHYILS-FAID-YDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALS 115 (311)
Q Consensus 38 vv~~Y~~~~~~~~~~~~~~i~~~~~Thii~~-fa~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~~~~g~kvlls 115 (311)
+++||.+|..... ....-....+|||.-. |-+. .+|.+. ...+.. ....++.+|++++-++++.+
T Consensus 2 ~l~~~~~w~~~s~--~sl~~~~~~l~~vsP~W~~~~~~~g~l~---------~~~d~~--~~~~~~~~k~~~~~l~~~~~ 68 (298)
T cd06549 2 ALAFYTPWDDASF--ASLKRHAPRLDWLVPEWLNLTGPEGRID---------VFVDPQ--GVAIIAAAKAHPKVLPLVQN 68 (298)
T ss_pred eeEEEecCChhhH--HHHHHhhccCCEEeceeEEEecCCCcee---------ccCChH--HHHHHHHHHcCCceeEEEEe
Confidence 4667777743221 1111123357888743 3344 455542 111111 12345667776677888889
Q ss_pred ECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC-CChhhHHHHHHHHHHHHhhCCCeEEEEeCC
Q 021511 116 LGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ-ADPNTFAECIGRLIKTLKKNGAISFASIAP 194 (311)
Q Consensus 116 iGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~-~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p 194 (311)
++|+..+... +....+..+.|++|++++++++++|||||||||||++. +|+++|+.||+|||++|++.++.+++++++
T Consensus 69 ~~~~~~~~~~-~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~~~~~lsv~v~~ 147 (298)
T cd06549 69 ISGGAWDGKN-IARLLADPSARAKFIANIAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPAQGKQLTVTVPA 147 (298)
T ss_pred cCCCCCCHHH-HHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhhcCcEEEEEecC
Confidence 9887654321 12233445567789999999999999999999999984 688999999999999999988888888766
Q ss_pred CCCchhhhhH-HHHHHhhCCeeeEEEecccCCCCC----CCHHHHHHHHHHhhcCCCCCcEEEceecCC
Q 021511 195 YDDDQVQSHY-LALWKSYGDLIDYVNFQFYAYAQG----TSVSQFMDYFKTQSSNYKGGKVLVSFISDG 258 (311)
Q Consensus 195 ~~~~~~~~~y-~~~~~~~~d~id~~~~~~y~~~~~----~~~~~~~~~~~~~~~~~p~~KivlG~p~~~ 258 (311)
... .| .+.+.+++|++.+|+||+|+.+.. .+.+...+.......++|++||+||+|+||
T Consensus 148 ~~~-----~~d~~~l~~~~D~v~lMtYD~~~~~~~~gp~a~~~~~~~~~~~~~~~vp~~KlvlGip~YG 211 (298)
T cd06549 148 DEA-----DWNLKALARNADKLILMAYDEHYQGGAPGPIASQDWFESNLAQAVKKLPPEKLIVALGSYG 211 (298)
T ss_pred CCC-----CCCHHHHHHhCCEEEEEEeccCCCCCCCCCCCChhhHHHHHHHHHhCCCHHHEEEEecccC
Confidence 432 24 467899999999999999863322 222322223333456899999999999999
No 22
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=99.93 E-value=4e-24 Score=187.68 Aligned_cols=257 Identities=18% Similarity=0.211 Sum_probs=168.6
Q ss_pred CCCCeEEEEeeee--ecccccccccCCCCeeEEEEEEEeee-c-CCCCCCCCCCCccccccCC----CCCCHHHHHHHHh
Q 021511 34 ESSNLFREYIGAE--FNNVKFTDVPINSNVEFHYILSFAID-Y-DTSSSPSPTNGKFNVFWDT----GNLSPSQVSAIKN 105 (311)
Q Consensus 34 ~~~~vv~~Y~~~~--~~~~~~~~~~i~~~~~Thii~~fa~~-~-~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~lk~ 105 (311)
..+--++.||+.+ .....+...+-.. -+..++++|.++ + ++...+ ...+.+.+.... .....++|+.|+.
T Consensus 24 ~~~t~IA~YWGQN~aG~q~~Ls~yC~~~-~yd~~~lsFL~~F~~~~Tp~L-NfAn~Csd~~~~~l~~CTqi~~di~~CQS 101 (568)
T KOG4701|consen 24 TNQTAIAGYWGQNLAGDQKRLSSYCQNT-TYDAIILSFLIDFNVDGTPVL-NFANLCSDSDTFSLKKCTQIETDIQVCQS 101 (568)
T ss_pred ccccceEEEeccccccchhhhhhhhccC-ccceeeeehhhhcCCCCCcee-ehhcccCccccccccccchhhhHHHHHHh
Confidence 3455789999854 4455566554333 356688889844 2 332211 112222222111 1123567788877
Q ss_pred hCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHH-------cC---CCeEEeecCCCCCChhhHHHHHH
Q 021511 106 RHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKE-------YN---LDGIDIDYEHFQADPNTFAECIG 175 (311)
Q Consensus 106 ~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~-------~g---~DGiDiD~E~~~~d~~~~~~~l~ 175 (311)
.|+|||||+||..++- .+.. ++-+++|++.+.+.... +| +||+|||+|.. ....|..|.+
T Consensus 102 --~GiKVlLSLGG~~GnY---s~~~---d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~g--~~~~ysaLA~ 171 (568)
T KOG4701|consen 102 --NGIKVLLSLGGYNGNY---SLNN---DDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEKG--TNTAYSALAK 171 (568)
T ss_pred --cCeEEEEeccCcccce---eecc---chhHHHHHHHHHHHhcCCccccCcccchhccceeeeeecC--CcchHHHHHH
Confidence 8999999999998773 2222 12234677766655432 11 99999999986 3468999999
Q ss_pred HHHHHHhhCC---CeEEEEeCCCCCchhhhhHHHHHHhhCCeeeEEEecccCCC----CCCCHHHHHHHHHHhhcCCCCC
Q 021511 176 RLIKTLKKNG---AISFASIAPYDDDQVQSHYLALWKSYGDLIDYVNFQFYAYA----QGTSVSQFMDYFKTQSSNYKGG 248 (311)
Q Consensus 176 ~Lr~~l~~~~---~~~~a~~~p~~~~~~~~~y~~~~~~~~d~id~~~~~~y~~~----~~~~~~~~~~~~~~~~~~~p~~ 248 (311)
+||+.|...+ ++..|++||+++... ...+ .-..|||+.+||||.. ..++.....+.|.+++..+.++
T Consensus 172 ~L~~~Fa~~~r~yYLsaAPQCP~PD~~~----G~aL--~~~~fDf~~IQFYNN~~CS~SsG~~Q~~fDsW~~ya~~~a~n 245 (568)
T KOG4701|consen 172 RLLEIFASDPRRYYLSAAPQCPVPDHTL----GKAL--SENSFDFLSIQFYNNSTCSGSSGSRQSTFDAWVEYAEDSAYN 245 (568)
T ss_pred HHHHHHccCCceEEeccCCCCCCCchhh----hhhh--hccccceEEEEeecCCCcccccCcccccHHHHHHHHhhhccc
Confidence 9999997654 466667888765211 1222 2446999999999752 2233344456677766666676
Q ss_pred c---EEEceecCC---CCCCCChhhHHH-HHHHHhcCCCCCeEEEEee---eCCCCCCceechhHHHHHh
Q 021511 249 K---VLVSFISDG---SGGLAPGDGFFT-ACSRLKSQKQLHGIFVWSA---DDSKKNGFRYEKQSQALLA 308 (311)
Q Consensus 249 K---ivlG~p~~~---~~g~~~~~~~~~-~~~~~~~~~~~~Gvm~W~~---~~d~~~~~~~~~~~~~~l~ 308 (311)
| ++||+|..+ +.||.++..+.. .+..+++...|||||+|+. .++..||=.++.-++.+++
T Consensus 246 Kn~~lFLGLPg~~~AAGSGYIsp~~Lt~~~l~~~a~S~~fGGv~LWd~s~aF~~~~NG~~~~~ILk~l~t 315 (568)
T KOG4701|consen 246 KNTSLFLGLPGHQNAAGSGYISPKNLTRDLLNYKANSTLFGGVTLWDTSLAFMSYDNGSFVEAILKILDT 315 (568)
T ss_pred ccceEEeeccCCcccccCCccCchHHHHHHHHhhhhccccccEEEeechhhhhhcccCchHHHHHHHHhc
Confidence 6 999999987 789999877654 6777777789999999998 8888898555555555554
No 23
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.84 E-value=8.7e-20 Score=162.53 Aligned_cols=221 Identities=15% Similarity=0.195 Sum_probs=123.3
Q ss_pred CeeEEEEEEEeeec-CCCCCCCCCCCccccccCCCCCCHHHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHH
Q 021511 60 NVEFHYILSFAIDY-DTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVS 138 (311)
Q Consensus 60 ~~~Thii~~fa~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~ 138 (311)
..|+|++++|+... ++... ..+... .+......++++.||+ .|+||+||||||.... +..+..+ |+
T Consensus 24 ~g~~~v~lAFi~~~~~~~~~---w~g~~~--~~~~~~~~~~i~~lk~--~G~kViiS~GG~~g~~--~~~~~~~----~~ 90 (294)
T cd06543 24 TGVKAFTLAFIVASGGCKPA---WGGSYP--LDQGGWIKSDIAALRA--AGGDVIVSFGGASGTP--LATSCTS----AD 90 (294)
T ss_pred cCCCEEEEEEEEcCCCCccc---CCCCCC--cccchhHHHHHHHHHH--cCCeEEEEecCCCCCc--cccCccc----HH
Confidence 36899999998332 22221 111100 0001223678889998 6799999999998763 1123333 44
Q ss_pred HHHHHHHHHHHHcCCCeEEeecCCCC-CCh---hhHHHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhhH-HHHHHh---
Q 021511 139 NAVASLTSIIKEYNLDGIDIDYEHFQ-ADP---NTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHY-LALWKS--- 210 (311)
Q Consensus 139 ~~i~si~~~~~~~g~DGiDiD~E~~~-~d~---~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~y-~~~~~~--- 210 (311)
+|++++.+++++|+|||||||||++. .|+ +++.++|++|+++++.....+++++.|..- ....| ....++
T Consensus 91 ~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p~gl--~~~g~~~l~~a~~~G 168 (294)
T cd06543 91 QLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLPTGL--TPDGLNVLEAAAANG 168 (294)
T ss_pred HHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCCCCCC--ChhHHHHHHHHHHcC
Confidence 67888889999999999999999985 343 789999999998875322233334444322 11223 222333
Q ss_pred -hCCeeeEEEecccCCCCCCC-HHH---HH-HHHHHhhcCCC---CCcE--EEceecC-C-CC--C-CCChhhHHHHHHH
Q 021511 211 -YGDLIDYVNFQFYAYAQGTS-VSQ---FM-DYFKTQSSNYK---GGKV--LVSFISD-G-SG--G-LAPGDGFFTACSR 274 (311)
Q Consensus 211 -~~d~id~~~~~~y~~~~~~~-~~~---~~-~~~~~~~~~~p---~~Ki--vlG~p~~-~-~~--g-~~~~~~~~~~~~~ 274 (311)
..|+|++|++|+++..+... -+. .. ....+...-+| .+++ -+|+..- | .. + .-+.+.. +.+..
T Consensus 169 v~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~~s~~~~~~~ig~TpMiG~nD~~~e~ft~~da-~~~~~ 247 (294)
T cd06543 169 VDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPKLSDAELWAMIGVTPMIGVNDVGSEVFTLADA-QTLVD 247 (294)
T ss_pred CCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHccccccccccCCCCceeeHHHH-HHHHH
Confidence 56777777777665321111 111 11 11111111122 1111 1344322 1 11 1 1112222 23444
Q ss_pred HhcCCCCCeEEEEeeeCCCCCC
Q 021511 275 LKSQKQLHGIFVWSADDSKKNG 296 (311)
Q Consensus 275 ~~~~~~~~Gvm~W~~~~d~~~~ 296 (311)
..++.++|.+.+|+++.|..++
T Consensus 248 fA~~~~l~~~s~Ws~~RD~~~~ 269 (294)
T cd06543 248 FAKEKGLGRLSMWSLNRDRPCP 269 (294)
T ss_pred HHHhCCCCeEeeeeccCCCCCC
Confidence 5556789999999999998864
No 24
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=99.65 E-value=5.5e-15 Score=133.16 Aligned_cols=151 Identities=12% Similarity=0.175 Sum_probs=101.4
Q ss_pred CCcEEEEEECCCC--CCCC--ceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCC-CCChhhHHHHHHHHHHHHh
Q 021511 108 SNVKVALSLGGDS--VSSG--KVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHF-QADPNTFAECIGRLIKTLK 182 (311)
Q Consensus 108 ~g~kvllsiGG~~--~~~~--~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~-~~d~~~~~~~l~~Lr~~l~ 182 (311)
+++|.++.+-..+ .... -.......++..++++++++++.++.+|+.|+.||+|.. +.|++.|+.|++++|..|+
T Consensus 159 ~~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~~~DR~~yt~flR~~r~~l~ 238 (423)
T COG3858 159 RKIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVGPGDRELYTDFLRQVRDALH 238 (423)
T ss_pred cccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCCHHHHHHHHHHHHHHHHHhc
Confidence 4677776664333 1110 011112245555678999999999999999999999997 4799999999999999999
Q ss_pred hCCCeEEEEeCCCCCchh-hh---hHH-HHHHhhCCeeeEEEecccCCC-C---CCCHHHHHHHHHHhhcCCCCCcEEEc
Q 021511 183 KNGAISFASIAPYDDDQV-QS---HYL-ALWKSYGDLIDYVNFQFYAYA-Q---GTSVSQFMDYFKTQSSNYKGGKVLVS 253 (311)
Q Consensus 183 ~~~~~~~a~~~p~~~~~~-~~---~y~-~~~~~~~d~id~~~~~~y~~~-~---~~~~~~~~~~~~~~~~~~p~~KivlG 253 (311)
++++.++.+++|...+.. .. .|+ ..+.+++|+|-+|+|+-|..| + ..+........+-....+|++||+||
T Consensus 239 ~~G~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~gG~PG~vA~i~~vr~~ieya~T~iP~~Kv~mG 318 (423)
T COG3858 239 SGGYTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSGGPPGPVASIGWVRKVIEYALTVIPAEKVMMG 318 (423)
T ss_pred cCCeEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcCCCCCCcccCchhHhhhhhhhheecchHHeEEc
Confidence 999988888888653222 11 232 445666666666666666322 1 12222222222224457899999999
Q ss_pred eecCC
Q 021511 254 FISDG 258 (311)
Q Consensus 254 ~p~~~ 258 (311)
+|+||
T Consensus 319 ip~YG 323 (423)
T COG3858 319 IPLYG 323 (423)
T ss_pred ccccc
Confidence 99998
No 25
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=98.75 E-value=2.3e-07 Score=80.98 Aligned_cols=186 Identities=11% Similarity=0.149 Sum_probs=107.3
Q ss_pred CHHHHHHHHhhCCCcEEEEEE--CCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEee-cCCCCC--ChhhH
Q 021511 96 SPSQVSAIKNRHSNVKVALSL--GGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDID-YEHFQA--DPNTF 170 (311)
Q Consensus 96 ~~~~i~~lk~~~~g~kvllsi--GG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD-~E~~~~--d~~~~ 170 (311)
...-++++|+++++++++.-+ -.++... .......++.|++..+.++++++++||||+-++ |....+ +....
T Consensus 129 d~gwiralRk~~~~l~ivPR~~fd~~~~~d---~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~i~d~~a 205 (392)
T KOG2091|consen 129 DPGWIRALRKSGKDLHIVPRFYFDEFTSAD---LKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADVIADKDA 205 (392)
T ss_pred ChHHHHHHHHhCCCceeeceehhhhccchH---HHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHHHhhhHH
Confidence 467899999999999985432 3333321 112234566788899999999999999999997 332211 11334
Q ss_pred HHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhh--H----HHHHHhhCCeeeEEEecccC---CCCCCCHHHHHHHHHHh
Q 021511 171 AECIGRLIKTLKKNGAISFASIAPYDDDQVQSH--Y----LALWKSYGDLIDYVNFQFYA---YAQGTSVSQFMDYFKTQ 241 (311)
Q Consensus 171 ~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~--y----~~~~~~~~d~id~~~~~~y~---~~~~~~~~~~~~~~~~~ 241 (311)
-.++..|-++|++..+..+.+++|...+..... + ...+....|.+.+|+|++-+ +++....+ ++..-...
T Consensus 206 l~~v~hl~k~Lhkq~l~~iLvvPp~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~~~pg~nap~~-wi~~~l~~ 284 (392)
T KOG2091|consen 206 LELVEHLGKALHKQELQAILVVPPVIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLVQGPGPNAPLE-WIRHCLHH 284 (392)
T ss_pred HHHHHHHHHHHHHhheEEEEEeCCCCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccccCCCCCCCHH-HHHHHHHH
Confidence 467778888888877766666666332222221 2 23345566667777777654 33333333 22222222
Q ss_pred hcC--CCCCcEEEceecCC---CC-CCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 021511 242 SSN--YKGGKVLVSFISDG---SG-GLAPGDGFFTACSRLKSQKQLHGIFVWS 288 (311)
Q Consensus 242 ~~~--~p~~KivlG~p~~~---~~-g~~~~~~~~~~~~~~~~~~~~~Gvm~W~ 288 (311)
..+ -.+.||++|+..|| .. ...++-+..+-+..++.. .-+|.|+
T Consensus 285 l~~~s~~r~KiLlGlNFYG~d~~~gdg~~~IT~~rYL~lLk~~---k~~~~~D 334 (392)
T KOG2091|consen 285 LGGSSAKRPKILLGLNFYGNDFNLGDGGEAITAKRYLQLLKGE---KSVFKFD 334 (392)
T ss_pred hCCccccccceeEeeeccccccccCCCCCceeHHHHHHHHhcc---Ccceeec
Confidence 221 12479999999999 11 112233344444445433 3455564
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.22 E-value=5.9e-06 Score=75.42 Aligned_cols=146 Identities=14% Similarity=0.082 Sum_probs=83.3
Q ss_pred HHHHHHhhCCCcEEEEEECC-CCCCCC---ceecC-CCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC---CChhhH
Q 021511 99 QVSAIKNRHSNVKVALSLGG-DSVSSG---KVYFN-PSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ---ADPNTF 170 (311)
Q Consensus 99 ~i~~lk~~~~g~kvllsiGG-~~~~~~---~~~~~-~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~---~d~~~~ 170 (311)
-+..+++ .|+||+-.|-= +..... .++.+ +.. +..+++.|+++++.|||||+-||+|... ++.+++
T Consensus 51 ~idaAHk--nGV~Vlgti~~e~~~~~~~~~~lL~~~~~~----~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l 124 (339)
T cd06547 51 WINAAHR--NGVPVLGTFIFEWTGQVEWLEDFLKKDEDG----SFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRL 124 (339)
T ss_pred HHHHHHh--cCCeEEEEEEecCCCchHHHHHHhccCccc----chHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHH
Confidence 3444554 59999977741 111111 12222 333 3468888889999999999999999864 477999
Q ss_pred HHHHHHHHHHHhhCCC---eEEE-EeCCCCCchhhhhHHHHH-Hh---hCCeeeEEEecccCCCCCCCHHHHHHHHHHhh
Q 021511 171 AECIGRLIKTLKKNGA---ISFA-SIAPYDDDQVQSHYLALW-KS---YGDLIDYVNFQFYAYAQGTSVSQFMDYFKTQS 242 (311)
Q Consensus 171 ~~~l~~Lr~~l~~~~~---~~~a-~~~p~~~~~~~~~y~~~~-~~---~~d~id~~~~~~y~~~~~~~~~~~~~~~~~~~ 242 (311)
..|+++|+++++++.. +..- ++.-. ..-.+...+ .. ..+..|-|.. -|+|.. ...+..++.-...
T Consensus 125 ~~F~~~L~~~~~~~~~~~~v~WYDs~t~~----G~l~wQn~Ln~~N~~ff~~~D~~Fl-NY~W~~-~~l~~s~~~a~~~- 197 (339)
T cd06547 125 IAFLRYLKAKLHENVPGSLVIWYDSMTED----GKLSWQNELNSKNKPFFDVCDGIFL-NYWWTE-ESLERSVQLAEGL- 197 (339)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEEecCCCC----CccchhhhhhHHHHHHHhhhcceeE-ecCCCc-chHHHHHHHHHHc-
Confidence 9999999999998542 2222 22111 111121111 11 2223332211 133333 3444443333333
Q ss_pred cCCCCCcEEEceecCC
Q 021511 243 SNYKGGKVLVSFISDG 258 (311)
Q Consensus 243 ~~~p~~KivlG~p~~~ 258 (311)
|-.+.+|.+|+-..+
T Consensus 198 -g~~~~dvy~GiDv~g 212 (339)
T cd06547 198 -GRSPYDVYVGVDVWG 212 (339)
T ss_pred -CCCHhHEEEEEEEEc
Confidence 557889999998886
No 27
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.70 E-value=0.00044 Score=62.64 Aligned_cols=129 Identities=19% Similarity=0.311 Sum_probs=78.2
Q ss_pred ecCCCchhHHHHHHHHHHHHHHHHcCCCeEEee-cCCCC-------------------------CC-------hhhHHHH
Q 021511 127 YFNPSSVDTWVSNAVASLTSIIKEYNLDGIDID-YEHFQ-------------------------AD-------PNTFAEC 173 (311)
Q Consensus 127 ~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD-~E~~~-------------------------~d-------~~~~~~~ 173 (311)
+++|.. .+-++-+++-+.+++++|++|||.|| +-+|. +| +++.+.|
T Consensus 130 ~lnP~~-PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~ 208 (311)
T PF02638_consen 130 WLNPGH-PEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNF 208 (311)
T ss_pred EECCCC-HHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHH
Confidence 456654 34455566677788999999999999 44531 23 3567889
Q ss_pred HHHHHHHHhhCCCeEEEEeCCCCCc--hhhhhH--HHHHHhhCCeeeEEEecccCC-CCC--CCHHHHHHHHHHhhcCCC
Q 021511 174 IGRLIKTLKKNGAISFASIAPYDDD--QVQSHY--LALWKSYGDLIDYVNFQFYAY-AQG--TSVSQFMDYFKTQSSNYK 246 (311)
Q Consensus 174 l~~Lr~~l~~~~~~~~a~~~p~~~~--~~~~~y--~~~~~~~~d~id~~~~~~y~~-~~~--~~~~~~~~~~~~~~~~~p 246 (311)
++++++++++.+.-+..+++|.... .....| .....+ -.+||++..|.|.. -+. ...+.....|.+...+ .
T Consensus 209 V~~i~~~ik~~kP~v~~sisp~g~~~~~y~~~~qD~~~W~~-~G~iD~i~Pq~Y~~~~~~~~~~~~~~~~~w~~~~~~-~ 286 (311)
T PF02638_consen 209 VKRIYDAIKAIKPWVKFSISPFGIWNSAYDDYYQDWRNWLK-EGYIDYIVPQIYWSDFSHFTAPYEQLAKWWAKQVKP-T 286 (311)
T ss_pred HHHHHHHHHHhCCCCeEEEEeecchhhhhhheeccHHHHHh-cCCccEEEeeecccccchhHHHHHHHHHHHHHhhcC-C
Confidence 9999999988664333333333211 111222 133333 46889999999943 111 2344455556554321 3
Q ss_pred CCcEEEceecCC
Q 021511 247 GGKVLVSFISDG 258 (311)
Q Consensus 247 ~~KivlG~p~~~ 258 (311)
.-+|.+|+..|.
T Consensus 287 ~v~ly~G~~~y~ 298 (311)
T PF02638_consen 287 NVHLYIGLALYK 298 (311)
T ss_pred CceEEEccCcCC
Confidence 358999998886
No 28
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=97.49 E-value=0.0024 Score=52.36 Aligned_cols=111 Identities=13% Similarity=0.187 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHH-cCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhhHHHHHHhhCCeee
Q 021511 138 SNAVASLTSIIKE-YNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGDLID 216 (311)
Q Consensus 138 ~~~i~si~~~~~~-~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~y~~~~~~~~d~id 216 (311)
+++.+.+.++-.. ..+.||.||+..+...-+.|..|+++||++|++.-.+++.....+... +.....+.+.+|.+-
T Consensus 27 ~~i~~~l~~W~~~G~~v~giQIDfDa~t~~L~~Y~~fL~~LR~~LP~~~~LSIT~L~dW~~~---~~~L~~L~~~VDE~V 103 (181)
T PF11340_consen 27 ARILQLLQRWQAAGNNVAGIQIDFDAATSRLPAYAQFLQQLRQRLPPDYRLSITALPDWLSS---PDWLNALPGVVDELV 103 (181)
T ss_pred HHHHHHHHHHHHcCCCceEEEEecCccccchHHHHHHHHHHHHhCCCCceEeeEEehhhhcC---chhhhhHhhcCCeeE
Confidence 3444444444332 258999999999988889999999999999998766766666555431 112333444455555
Q ss_pred EEEecccCCCCCCCHHHHHHHHHHhhcCCCCCcEEEceecCC
Q 021511 217 YVNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFISDG 258 (311)
Q Consensus 217 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~p~~KivlG~p~~~ 258 (311)
++.|+ .-.++..+.. |.....+++ --.-+|+|.||
T Consensus 104 lQ~yq-----Gl~d~~~~~~-yl~~l~~l~-~PFriaLp~yG 138 (181)
T PF11340_consen 104 LQVYQ-----GLFDPPNYAR-YLPRLARLT-LPFRIALPQYG 138 (181)
T ss_pred EEeec-----CCCCHHHHHH-HHHHHhcCC-CCeEEecCcCC
Confidence 54442 1223333333 333333444 44679999998
No 29
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.08 E-value=0.044 Score=49.49 Aligned_cols=96 Identities=16% Similarity=0.275 Sum_probs=67.4
Q ss_pred eecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeec-CCCC------------C---Ch-hhHHHHHHHHHHHHhhCCCeE
Q 021511 126 VYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDY-EHFQ------------A---DP-NTFAECIGRLIKTLKKNGAIS 188 (311)
Q Consensus 126 ~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~-E~~~------------~---d~-~~~~~~l~~Lr~~l~~~~~~~ 188 (311)
.+.+|-+++.+ ...-.|+.-+.+.|||.|-||+ .+|. . ++ +..+.||+..|+++++.+..+
T Consensus 113 ~WvnP~~~evw--~Y~i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~v 190 (316)
T PF13200_consen 113 AWVNPYSKEVW--DYNIDIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYGVPV 190 (316)
T ss_pred ccCCCCCHHHH--HHHHHHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcCCCE
Confidence 35577776655 3444677888889999999997 4552 1 12 568889999999999998888
Q ss_pred EEEeCCCCCchh-hhhHHHHHHhhCCeeeEEEeccc
Q 021511 189 FASIAPYDDDQV-QSHYLALWKSYGDLIDYVNFQFY 223 (311)
Q Consensus 189 ~a~~~p~~~~~~-~~~y~~~~~~~~d~id~~~~~~y 223 (311)
++.+-+...... .....+.+.+++.++|++.-|.|
T Consensus 191 SaDVfG~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiY 226 (316)
T PF13200_consen 191 SADVFGYVAWSPDDMGIGQDFEKIAEYVDYISPMIY 226 (316)
T ss_pred EEEecccccccCCCCCcCCCHHHHhhhCCEEEeccc
Confidence 887766432211 11223566777888888888888
No 30
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=96.86 E-value=0.0009 Score=60.52 Aligned_cols=111 Identities=18% Similarity=0.186 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHcCCCeEEeecCCCC---CChhhHHHHHHHHHHHHhhCCC---eEEE-EeCCCCCchhhhhHHH-HHHh
Q 021511 139 NAVASLTSIIKEYNLDGIDIDYEHFQ---ADPNTFAECIGRLIKTLKKNGA---ISFA-SIAPYDDDQVQSHYLA-LWKS 210 (311)
Q Consensus 139 ~~i~si~~~~~~~g~DGiDiD~E~~~---~d~~~~~~~l~~Lr~~l~~~~~---~~~a-~~~p~~~~~~~~~y~~-~~~~ 210 (311)
.+++.|+++++-|||||.-|++|.+. .+.+.+..|+++|++++++ .. +..- ++.... ...+.. +...
T Consensus 86 ~~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~F~~~l~~~~~~-~~~~~v~WYDs~t~~G----~l~~qn~Ln~~ 160 (311)
T PF03644_consen 86 PYADKLIEIAKYYGFDGWLINIETPLSGPEDAENLIDFLKYLRKEAHE-NPGSEVIWYDSVTNSG----RLSWQNELNDK 160 (311)
T ss_dssp HHHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHHHHHHHHHHHHH-T-T-EEEEES-B-SSS----SB---SSS-TT
T ss_pred HHHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHHHHHHHHHHhhc-CCCcEEEEeecCCcCC----ccchHHHHHhh
Confidence 56788889999999999999999873 3568999999999999988 32 2222 222211 111211 1111
Q ss_pred h---CCeeeEEEecccCCCCCCCHHHHHHHHHHhhcCCCCCcEEEceecCC
Q 021511 211 Y---GDLIDYVNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFISDG 258 (311)
Q Consensus 211 ~---~d~id~~~~~~y~~~~~~~~~~~~~~~~~~~~~~p~~KivlG~p~~~ 258 (311)
. .+..|-+.+. |.| ........++.-... +.++.+|.+|+-..+
T Consensus 161 N~~f~~~~d~iFlN-Y~W-~~~~l~~s~~~A~~~--~~~~~~vy~GiDv~g 207 (311)
T PF03644_consen 161 NKPFFDVCDGIFLN-YNW-NPDSLESSVANAKSR--GRDPYDVYAGIDVFG 207 (311)
T ss_dssp TGGGBES-SEEEE--S---SHHHHHHHHHHHHHH--TS-GGGEEEEEEHHH
T ss_pred CcchhhhcceeeEe-cCC-CcccHHHHHHHHHHc--CCCHHHEEEEEEEEc
Confidence 2 2223322222 222 222244444444444 668889999998776
No 31
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=93.98 E-value=1.8 Score=39.62 Aligned_cols=140 Identities=16% Similarity=0.226 Sum_probs=67.6
Q ss_pred CCcEEEEEECC---CCCCC-Cceec--CCCchhHHH---HHHHHHHHHHHHHcCCCeEEeecCCCC--------------
Q 021511 108 SNVKVALSLGG---DSVSS-GKVYF--NPSSVDTWV---SNAVASLTSIIKEYNLDGIDIDYEHFQ-------------- 164 (311)
Q Consensus 108 ~g~kvllsiGG---~~~~~-~~~~~--~~~~~~~~~---~~~i~si~~~~~~~g~DGiDiD~E~~~-------------- 164 (311)
.|+||||-+.= |.... +.... ...+.++.. .++..++++-++. .|+..||-...
T Consensus 70 ~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~---~G~~pd~VQVGNEin~Gmlwp~g~~ 146 (332)
T PF07745_consen 70 AGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA---AGVTPDMVQVGNEINNGMLWPDGKP 146 (332)
T ss_dssp TT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH---TT--ESEEEESSSGGGESTBTTTCT
T ss_pred CCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH---CCCCccEEEeCccccccccCcCCCc
Confidence 79999999961 11111 11000 111223333 3344444444444 66777775431
Q ss_pred CChhhHHHHHHHHHHHHhhCC--CeEEEEeCCCCCchhhhhHHHHHHhhCCeeeEEEecccCCCCCCCHHHHHHHHHHhh
Q 021511 165 ADPNTFAECIGRLIKTLKKNG--AISFASIAPYDDDQVQSHYLALWKSYGDLIDYVNFQFYAYAQGTSVSQFMDYFKTQS 242 (311)
Q Consensus 165 ~d~~~~~~~l~~Lr~~l~~~~--~~~~a~~~p~~~~~~~~~y~~~~~~~~d~id~~~~~~y~~~~~~~~~~~~~~~~~~~ 242 (311)
.+.++|.+|+++-+++.+... ...++-.....+......+...+.+...-+|++.+-+|-++.. +.+...+..+...
T Consensus 147 ~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~-~l~~l~~~l~~l~ 225 (332)
T PF07745_consen 147 SNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHG-TLEDLKNNLNDLA 225 (332)
T ss_dssp T-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST--HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecCCCCcc-hHHHHHHHHHHHH
Confidence 345678888877777776533 2333323332222122344566666778899999999987766 5555555444444
Q ss_pred cCCCCCcEEE
Q 021511 243 SNYKGGKVLV 252 (311)
Q Consensus 243 ~~~p~~Kivl 252 (311)
+.+. .+|++
T Consensus 226 ~ry~-K~V~V 234 (332)
T PF07745_consen 226 SRYG-KPVMV 234 (332)
T ss_dssp HHHT--EEEE
T ss_pred HHhC-CeeEE
Confidence 4443 34554
No 32
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=93.43 E-value=0.6 Score=42.27 Aligned_cols=87 Identities=10% Similarity=0.093 Sum_probs=54.6
Q ss_pred HHHHHHHHhhCCCcEEE--EEECCCCCCCCce-------------ecC---------CCchhHHHHHHHHHHHHHHHHcC
Q 021511 97 PSQVSAIKNRHSNVKVA--LSLGGDSVSSGKV-------------YFN---------PSSVDTWVSNAVASLTSIIKEYN 152 (311)
Q Consensus 97 ~~~i~~lk~~~~g~kvl--lsiGG~~~~~~~~-------------~~~---------~~~~~~~~~~~i~si~~~~~~~g 152 (311)
.+++..+|+ +|.||+ +|||-+.....+. ..+ .....+|++-+.+. ++.+.+-|
T Consensus 84 ~~~i~~Lk~--~g~~viaYlSvGe~E~~R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~r-l~~l~~kG 160 (315)
T TIGR01370 84 PEEIVRAAA--AGRWPIAYLSIGAAEDYRFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSY-LDRVIAQG 160 (315)
T ss_pred HHHHHHHHh--CCcEEEEEEEchhccccchhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHH-HHHHHHcC
Confidence 577888987 678876 7999754322100 000 01245677656655 56667789
Q ss_pred CCeEEeecC----CCC-------CChhhHHHHHHHHHHHHhhCCC
Q 021511 153 LDGIDIDYE----HFQ-------ADPNTFAECIGRLIKTLKKNGA 186 (311)
Q Consensus 153 ~DGiDiD~E----~~~-------~d~~~~~~~l~~Lr~~l~~~~~ 186 (311)
|||+.+|.- +.. ...+....++++|.+.+++...
T Consensus 161 fDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P 205 (315)
T TIGR01370 161 FDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNP 205 (315)
T ss_pred CCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCC
Confidence 999999952 211 1225678899999777776643
No 33
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=90.43 E-value=7.9 Score=34.46 Aligned_cols=140 Identities=12% Similarity=0.214 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHc-CCCeEEe-------ecCCCC--CC------hhhHHHHHHHHHHHHhhCCC-eEEE-Ee--CCCCCc
Q 021511 139 NAVASLTSIIKEY-NLDGIDI-------DYEHFQ--AD------PNTFAECIGRLIKTLKKNGA-ISFA-SI--APYDDD 198 (311)
Q Consensus 139 ~~i~si~~~~~~~-g~DGiDi-------D~E~~~--~d------~~~~~~~l~~Lr~~l~~~~~-~~~a-~~--~p~~~~ 198 (311)
..|.+|.+=|..| .||||=| |+|.+. .+ .+.+..|..||++..+.... +.++ -+ .|-..+
T Consensus 122 ~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~~~rp~lkTARNiya~pvl~P 201 (294)
T PF14883_consen 122 QIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALIDFTMELAAAVRRYRPDLKTARNIYAEPVLNP 201 (294)
T ss_pred HHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHHHHHHHHHHHHHHhCccchhhhcccccccCCc
Confidence 3677888777787 8999988 345331 11 14678888888888765432 2222 00 111112
Q ss_pred hhhhhHHHHHHhhCCeeeEEEecccCCCCC-CCHHHHHHHHHHhhcCCC--CCcEEEceecCC--CCCCCChhhHHHHHH
Q 021511 199 QVQSHYLALWKSYGDLIDYVNFQFYAYAQG-TSVSQFMDYFKTQSSNYK--GGKVLVSFISDG--SGGLAPGDGFFTACS 273 (311)
Q Consensus 199 ~~~~~y~~~~~~~~d~id~~~~~~y~~~~~-~~~~~~~~~~~~~~~~~p--~~KivlG~p~~~--~~g~~~~~~~~~~~~ 273 (311)
....+|.+.+.......|+..+|..-+-.. ..++.+.+...+..+..| .+|+|+=+.+-. ....++.+++..-++
T Consensus 202 ~se~WfAQnl~~fl~~YD~taimAMPymE~~~~~~~WL~~Lv~~v~~~p~~l~KtvFELQa~dwr~~~~I~~~~L~~~m~ 281 (294)
T PF14883_consen 202 ESEAWFAQNLDDFLKAYDYTAIMAMPYMEQAEDPEQWLAQLVDAVAARPGGLDKTVFELQAVDWRTSKPIPSEELADWMR 281 (294)
T ss_pred chhhHHHHhHHHHHHhCCeeheeccchhccccCHHHHHHHHHHHHHhcCCcccceEEEEeccCCccCCcCCHHHHHHHHH
Confidence 234556666666665667777766533222 145555444444333333 489999999887 455577788888888
Q ss_pred HHhcC
Q 021511 274 RLKSQ 278 (311)
Q Consensus 274 ~~~~~ 278 (311)
.++..
T Consensus 282 ~L~~~ 286 (294)
T PF14883_consen 282 QLQLN 286 (294)
T ss_pred HHHHc
Confidence 88865
No 34
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=88.22 E-value=11 Score=33.59 Aligned_cols=79 Identities=16% Similarity=0.304 Sum_probs=46.4
Q ss_pred HHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCC--------Chhh
Q 021511 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQA--------DPNT 169 (311)
Q Consensus 98 ~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~--------d~~~ 169 (311)
+.+...++...+..++++|+|... ++ ++ .+++.+.++|+|+|+|++-.|.. +.+.
T Consensus 87 ~~i~~~~~~~~~~pvi~si~g~~~------------~~----~~-~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~ 149 (289)
T cd02810 87 QDIAKAKKEFPGQPLIASVGGSSK------------ED----YV-ELARKIERAGAKALELNLSCPNVGGGRQLGQDPEA 149 (289)
T ss_pred HHHHHHHhccCCCeEEEEeccCCH------------HH----HH-HHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHH
Confidence 344444432247889999998621 22 22 23367777899999999987732 2233
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEeCCCC
Q 021511 170 FAECIGRLIKTLKKNGAISFASIAPYD 196 (311)
Q Consensus 170 ~~~~l~~Lr~~l~~~~~~~~a~~~p~~ 196 (311)
...+++++|+.. ..-+++-+.+..
T Consensus 150 ~~eiv~~vr~~~---~~pv~vKl~~~~ 173 (289)
T cd02810 150 VANLLKAVKAAV---DIPLLVKLSPYF 173 (289)
T ss_pred HHHHHHHHHHcc---CCCEEEEeCCCC
Confidence 445566666544 344555555543
No 35
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=87.08 E-value=0.84 Score=45.16 Aligned_cols=118 Identities=17% Similarity=0.147 Sum_probs=51.3
Q ss_pred HHHHHHHHhhCCCcEEEE---EECCCCCCCCceecCCCchhHHHHHHHHHHHHHH-HHcCCCeEEeecCCCCCChhhHHH
Q 021511 97 PSQVSAIKNRHSNVKVAL---SLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSII-KEYNLDGIDIDYEHFQADPNTFAE 172 (311)
Q Consensus 97 ~~~i~~lk~~~~g~kvll---siGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~-~~~g~DGiDiD~E~~~~d~~~~~~ 172 (311)
...+++.|++||++|+.. +.=||-.... ..+..... .-+.=++++| .-+.-.|+||||-.+.+++..=..
T Consensus 115 ~~L~~eAKkrNP~ikl~~L~W~~PgW~~~g~---~~~~~~~~---~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~~~~~ 188 (669)
T PF02057_consen 115 WWLMAEAKKRNPNIKLYGLPWGFPGWVGNGW---NWPYDNPQ---LTAYYVVSWLLGAKKTHGLDIDYVGIWNERGFDVN 188 (669)
T ss_dssp HHHHHHHHHH-TT-EEEEEES-B-GGGGTTS---S-TTSSHH---HHHHHHHHHHHHHHHHH-----EE-S-TTS---HH
T ss_pred hhhHHHHHhhCCCCeEEEeccCCCccccCCC---CCcccchh---hhhHHHHHHHHHHHHHhCCCceEechhhccCCChh
Confidence 566788999999999853 3335544321 11211111 0111223444 233345677888777556554457
Q ss_pred HHHHHHHHHhhCCC---eEEEEeCCCCCchhhhhHHHHHHhhCCeeeEEEeccc
Q 021511 173 CIGRLIKTLKKNGA---ISFASIAPYDDDQVQSHYLALWKSYGDLIDYVNFQFY 223 (311)
Q Consensus 173 ~l~~Lr~~l~~~~~---~~~a~~~p~~~~~~~~~y~~~~~~~~d~id~~~~~~y 223 (311)
.++.||+.|.++++ .++++=.-+.+ ... ......++.+.||++.+.+-
T Consensus 189 ~ik~lr~~l~~~gy~~vkiva~D~~~~~--~~~-~m~~D~~l~~avdvig~HY~ 239 (669)
T PF02057_consen 189 YIKWLRKALNSNGYNKVKIVAADNNWES--ISD-DMLSDPELRNAVDVIGYHYP 239 (669)
T ss_dssp HHHHHHHHHHHTT-TT-EEEEEEE-STT--HHH-HHHH-HHHHHH--EEEEES-
T ss_pred HHHHHHHHHhhccccceEEEEeCCCccc--hhh-hhhcCHHHHhcccEeccccC
Confidence 78999999998875 23332111111 111 12223566777788877643
No 36
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=86.38 E-value=16 Score=31.18 Aligned_cols=39 Identities=23% Similarity=0.424 Sum_probs=27.3
Q ss_pred CCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCC
Q 021511 108 SNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHF 163 (311)
Q Consensus 108 ~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~ 163 (311)
.+..++++|+|... + .|++ .++.+++.|||||+|+.=.|
T Consensus 53 ~~~p~~~qi~g~~~------------~----~~~~-aa~~~~~aG~d~ieln~g~p 91 (231)
T cd02801 53 EERPLIVQLGGSDP------------E----TLAE-AAKIVEELGADGIDLNMGCP 91 (231)
T ss_pred cCCCEEEEEcCCCH------------H----HHHH-HHHHHHhcCCCEEEEeCCCC
Confidence 57899999997632 1 2332 22566778999999997665
No 37
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=85.87 E-value=36 Score=33.10 Aligned_cols=187 Identities=18% Similarity=0.189 Sum_probs=98.2
Q ss_pred HHHHHHHHhhCCCcEEEEEEC---------CCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCC--
Q 021511 97 PSQVSAIKNRHSNVKVALSLG---------GDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQA-- 165 (311)
Q Consensus 97 ~~~i~~lk~~~~g~kvllsiG---------G~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~-- 165 (311)
...++++++.+|++|++.|-= |.-.+.. .......+++.+.+++=++++++.|.=-||+|+--.+.+
T Consensus 156 ip~ik~a~~~~~~lki~aSpWSpP~WMKtn~~~~g~g--~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP 233 (496)
T PF02055_consen 156 IPLIKEALAINPNLKIFASPWSPPAWMKTNGSMNGGG--SLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEP 233 (496)
T ss_dssp HHHHHHHHHHHTT-EEEEEES---GGGBTTSSSCSS---BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSC
T ss_pred HHHHHHHHHhCCCcEEEEecCCCCHHHccCCcCcCCC--ccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCC
Confidence 456677777788999998861 1100000 112222345677778788899999988888887544321
Q ss_pred ---------------ChhhHHHHHHH-HHHHHhhCCC-----eEEEEeCCCCCchhhhhH-HHHH--HhhCCeeeEEEec
Q 021511 166 ---------------DPNTFAECIGR-LIKTLKKNGA-----ISFASIAPYDDDQVQSHY-LALW--KSYGDLIDYVNFQ 221 (311)
Q Consensus 166 ---------------d~~~~~~~l~~-Lr~~l~~~~~-----~~~a~~~p~~~~~~~~~y-~~~~--~~~~d~id~~~~~ 221 (311)
..+....||+. |+.+|++.++ ++...-.- .....| ...+ .+..++|+-+.+.
T Consensus 234 ~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~----~~~~~~~~~il~d~~A~~yv~GiA~H 309 (496)
T PF02055_consen 234 DNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNR----DNLPDYADTILNDPEAAKYVDGIAFH 309 (496)
T ss_dssp CGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEG----GGTTHHHHHHHTSHHHHTTEEEEEEE
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCC----cccchhhhhhhcChhhHhheeEEEEE
Confidence 12345778886 9999988754 33332110 012234 3344 4567899999999
Q ss_pred ccCCCCCCCHHHHHHHHHHhhcCCCCCcEEEceecCC-CCCCC---ChhhHH-------HHHHHHhcCCCCCeEEEEeee
Q 021511 222 FYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFISDG-SGGLA---PGDGFF-------TACSRLKSQKQLHGIFVWSAD 290 (311)
Q Consensus 222 ~y~~~~~~~~~~~~~~~~~~~~~~p~~KivlG~p~~~-~~g~~---~~~~~~-------~~~~~~~~~~~~~Gvm~W~~~ 290 (311)
.|+.... ...+.... +.+| +|-++.--... .+... .-.... ..+..+. .+..|.+.|.+-
T Consensus 310 wY~g~~~---~~~l~~~h---~~~P-~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~ii~~ln--n~~~gw~~WNl~ 380 (496)
T PF02055_consen 310 WYGGDPS---PQALDQVH---NKFP-DKFLLFTEACCGSWNWDTSVDLGSWDRAERYAHDIIGDLN--NWVSGWIDWNLA 380 (496)
T ss_dssp ETTCS-H---CHHHHHHH---HHST-TSEEEEEEEESS-STTS-SS-TTHHHHHHHHHHHHHHHHH--TTEEEEEEEESE
T ss_pred CCCCCch---hhHHHHHH---HHCC-CcEEEeeccccCCCCcccccccccHHHHHHHHHHHHHHHH--hhceeeeeeeee
Confidence 9964221 11222211 2334 56666544432 11111 011111 1233332 356799999998
Q ss_pred CCCCCCce
Q 021511 291 DSKKNGFR 298 (311)
Q Consensus 291 ~d~~~~~~ 298 (311)
.|..+|=+
T Consensus 381 LD~~GGP~ 388 (496)
T PF02055_consen 381 LDENGGPN 388 (496)
T ss_dssp BETTS---
T ss_pred cCCCCCCc
Confidence 88776533
No 38
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=85.10 E-value=3.7 Score=32.21 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEeec
Q 021511 134 DTWVSNAVASLTSIIKEYNLDGIDIDY 160 (311)
Q Consensus 134 ~~~~~~~i~si~~~~~~~g~DGiDiD~ 160 (311)
..+++-++..|.+++++|++|||=+||
T Consensus 106 s~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 106 SPYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred ccHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 356777888899999999999998886
No 39
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=84.55 E-value=14 Score=33.49 Aligned_cols=127 Identities=14% Similarity=0.143 Sum_probs=59.8
Q ss_pred HHHHHHcCCCeEEeecCCCC-------------CChhhHHHHHHHHHHHHhhCCCeEEEEeCCCCC--chhhhhHHHHHH
Q 021511 145 TSIIKEYNLDGIDIDYEHFQ-------------ADPNTFAECIGRLIKTLKKNGAISFASIAPYDD--DQVQSHYLALWK 209 (311)
Q Consensus 145 ~~~~~~~g~DGiDiD~E~~~-------------~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~--~~~~~~y~~~~~ 209 (311)
++.+.++++|||||+.=-|. .+.+....+++++++.++ .-+++-+--..+ ......+.+.+.
T Consensus 72 a~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~---~pvsvKiR~g~~~~~~~~~~~~~~l~ 148 (309)
T PF01207_consen 72 AEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP---IPVSVKIRLGWDDSPEETIEFARILE 148 (309)
T ss_dssp HHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S---SEEEEEEESECT--CHHHHHHHHHHH
T ss_pred HHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc---cceEEecccccccchhHHHHHHHHhh
Confidence 36777899999999998872 466777888888888765 344444333322 111222345555
Q ss_pred hhCCeeeEEEecccCCCCCCCHHHHHHHHHHhhcCCCCCcEEEceecCCCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 021511 210 SYGDLIDYVNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFISDGSGGLAPGDGFFTACSRLKSQKQLHGIFVW 287 (311)
Q Consensus 210 ~~~d~id~~~~~~y~~~~~~~~~~~~~~~~~~~~~~p~~KivlG~p~~~~~g~~~~~~~~~~~~~~~~~~~~~Gvm~W 287 (311)
+.. ++.+++..-............+........++ +|..++++-.+.++.. . +.+..+..|||+=
T Consensus 149 ~~G--~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~-------ipvi~NGdI~s~~d~~---~-~~~~tg~dgvMig 213 (309)
T PF01207_consen 149 DAG--VSAITVHGRTRKQRYKGPADWEAIAEIKEALP-------IPVIANGDIFSPEDAE---R-MLEQTGADGVMIG 213 (309)
T ss_dssp HTT----EEEEECS-TTCCCTS---HHHHHHCHHC-T-------SEEEEESS--SHHHHH---H-HCCCH-SSEEEES
T ss_pred hcc--cceEEEecCchhhcCCcccchHHHHHHhhccc-------ceeEEcCccCCHHHHH---H-HHHhcCCcEEEEc
Confidence 555 88888866522211111111233333333333 4444434444343322 2 3334578899973
No 40
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=83.80 E-value=8.2 Score=37.91 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhC
Q 021511 135 TWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKN 184 (311)
Q Consensus 135 ~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~ 184 (311)
.-++-+++++.-|+++|++||+-||--..-.+. .-..|++++++.+++.
T Consensus 220 ~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~-~~~~~l~~~~~~~~~~ 268 (542)
T TIGR02402 220 EVRRYILDNALYWLREYHFDGLRLDAVHAIADT-SAKHILEELAREVHEL 268 (542)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccc-cHHHHHHHHHHHHHHH
Confidence 556677888999999999999999953211111 1246788888777653
No 41
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=82.02 E-value=4 Score=37.90 Aligned_cols=90 Identities=20% Similarity=0.118 Sum_probs=44.3
Q ss_pred HHHHHHhhCCCcEEEEEECCCCCCC-----C---ceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC------
Q 021511 99 QVSAIKNRHSNVKVALSLGGDSVSS-----G---KVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ------ 164 (311)
Q Consensus 99 ~i~~lk~~~~g~kvllsiGG~~~~~-----~---~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~------ 164 (311)
.++++|+ +|+..++++-....-. . .-.....-+....+.|+.=|++.++.|.=.||.|++-.|-
T Consensus 109 fL~~Ak~--rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~ 186 (384)
T PF14587_consen 109 FLKAAKE--RGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWN 186 (384)
T ss_dssp HHHHHHH--TT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-
T ss_pred HHHHHHH--cCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCC
Confidence 3344454 7899988874321100 0 0000111233445566666666666665578888875551
Q ss_pred ----------CChhhHHHHHHHHHHHHhhCCCeEEE
Q 021511 165 ----------ADPNTFAECIGRLIKTLKKNGAISFA 190 (311)
Q Consensus 165 ----------~d~~~~~~~l~~Lr~~l~~~~~~~~a 190 (311)
-+.+....++++|+++|+++++-+.+
T Consensus 187 W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I 222 (384)
T PF14587_consen 187 WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKI 222 (384)
T ss_dssp GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EE
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceE
Confidence 13456788999999999998874443
No 42
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=81.31 E-value=43 Score=33.81 Aligned_cols=140 Identities=13% Similarity=0.100 Sum_probs=79.5
Q ss_pred HHHHHHH-HHHHHcCCCeEEeecCCCCC---------------------------Ch-----------hhHHHHHHHHHH
Q 021511 139 NAVASLT-SIIKEYNLDGIDIDYEHFQA---------------------------DP-----------NTFAECIGRLIK 179 (311)
Q Consensus 139 ~~i~si~-~~~~~~g~DGiDiD~E~~~~---------------------------d~-----------~~~~~~l~~Lr~ 179 (311)
++|.+|. ++++.|.||||-||=+..-+ +. +.+..|-.||+.
T Consensus 444 ~~i~~i~~dla~~~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~~g~~~~~~~~~~~~~~~~~wt~~k~~~l~~f~~~l~~ 523 (671)
T PRK14582 444 AQVGMLYEDLAGHAAFDGILFHDDAVLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFTLELSA 523 (671)
T ss_pred HHHHHHHHHHHHhCCCceEEecccccccccccCCHHHHHHHHHcCCCcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555655 55566799999997554310 11 234578888888
Q ss_pred HHhhCC--CeEEE-Ee--CCCCCchhhhhHHHHHHhhCCeeeEEEecc--c-CCCCCCCHHHHHHHHHHhhcCCC--CCc
Q 021511 180 TLKKNG--AISFA-SI--APYDDDQVQSHYLALWKSYGDLIDYVNFQF--Y-AYAQGTSVSQFMDYFKTQSSNYK--GGK 249 (311)
Q Consensus 180 ~l~~~~--~~~~a-~~--~p~~~~~~~~~y~~~~~~~~d~id~~~~~~--y-~~~~~~~~~~~~~~~~~~~~~~p--~~K 249 (311)
..++-. .+.+| .+ .|-..+....+|.+.+.......|+..+|. | ..-.....+.++....+..+..| .+|
T Consensus 524 ~v~~~~~~~~~tarni~a~~~l~p~~e~w~aQ~l~~~~~~yD~~a~mampyme~~~~~~~~~wl~~l~~~v~~~~~~~~k 603 (671)
T PRK14582 524 RVKAIRGPQVKTARNIFALPVIQPESEAWFAQNLDDFLKSYDWTAPMAMPLMEGVAEKSSDAWLIQLVNQVKNIPGALDK 603 (671)
T ss_pred HHHhhcCccceeeccccccccCChhHHHHHHhHHHHHHhhcchhhhhcchhhhccCcccHHHHHHHHHHHHHhcCCcccc
Confidence 877632 23333 11 111122234566666666666667777776 3 11111123444443333333333 589
Q ss_pred EEEceecCCCC----CCCChhhHHHHHHHHhcC
Q 021511 250 VLVSFISDGSG----GLAPGDGFFTACSRLKSQ 278 (311)
Q Consensus 250 ivlG~p~~~~~----g~~~~~~~~~~~~~~~~~ 278 (311)
+|.=+.+-.+. ..++.+++...++.++..
T Consensus 604 ~vfelq~~dw~~~~~~~i~~~~l~~~~~~l~~~ 636 (671)
T PRK14582 604 TIFELQARDWQKNGQQAISSQQLAHWMSLLQLN 636 (671)
T ss_pred eEEEeeccccccCCCCCCCHHHHHHHHHHHHHc
Confidence 99999886632 347788899889988854
No 43
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=80.69 E-value=29 Score=31.02 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=28.4
Q ss_pred CCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC
Q 021511 108 SNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ 164 (311)
Q Consensus 108 ~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~ 164 (311)
.+.+++++|+|.. .+. |+ ..++.+++.|+|+|+|++-.|.
T Consensus 88 ~~~p~ivsi~g~~------------~~~----~~-~~a~~~~~~G~d~iElN~~cP~ 127 (296)
T cd04740 88 FGTPVIASIAGST------------VEE----FV-EVAEKLADAGADAIELNISCPN 127 (296)
T ss_pred CCCcEEEEEecCC------------HHH----HH-HHHHHHHHcCCCEEEEECCCCC
Confidence 4688999998742 222 33 2336678889999999988773
No 44
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=77.93 E-value=35 Score=30.61 Aligned_cols=89 Identities=10% Similarity=0.166 Sum_probs=48.0
Q ss_pred CcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcC-CCeEEeecCCCCC---------ChhhHHHHHHHHH
Q 021511 109 NVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN-LDGIDIDYEHFQA---------DPNTFAECIGRLI 178 (311)
Q Consensus 109 g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g-~DGiDiD~E~~~~---------d~~~~~~~l~~Lr 178 (311)
+..+++||+|.+ .+. |++ .++.++++| +|||+|+.-.|.. +.+....+++++|
T Consensus 91 ~~p~i~si~g~~------------~~~----~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr 153 (301)
T PRK07259 91 DTPIIANVAGST------------EEE----YAE-VAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVK 153 (301)
T ss_pred CCcEEEEeccCC------------HHH----HHH-HHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 678999998742 232 332 335678898 9999998855521 2233444555555
Q ss_pred HHHhhCCCeEEEEeCCCCCchhhhhHHHHHH-hhCCeeeEEE
Q 021511 179 KTLKKNGAISFASIAPYDDDQVQSHYLALWK-SYGDLIDYVN 219 (311)
Q Consensus 179 ~~l~~~~~~~~a~~~p~~~~~~~~~y~~~~~-~~~d~id~~~ 219 (311)
+.. ..-+.+-+.|... ......+.+. .-+|.|++.+
T Consensus 154 ~~~---~~pv~vKl~~~~~--~~~~~a~~l~~~G~d~i~~~n 190 (301)
T PRK07259 154 EVV---KVPVIVKLTPNVT--DIVEIAKAAEEAGADGLSLIN 190 (301)
T ss_pred Hhc---CCCEEEEcCCCch--hHHHHHHHHHHcCCCEEEEEc
Confidence 443 3444554555322 1111223333 3357776654
No 45
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=77.68 E-value=5 Score=39.41 Aligned_cols=65 Identities=17% Similarity=0.394 Sum_probs=42.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCC--------CC----ChhhHHHHHHHHHHHHhhCCCeEEEEeCCC
Q 021511 129 NPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHF--------QA----DPNTFAECIGRLIKTLKKNGAISFASIAPY 195 (311)
Q Consensus 129 ~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~--------~~----d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~ 195 (311)
+|. ...|++-++++..+.++.+||||+.||=-.. .. -++.|..||++++++++. ..++.=++..+
T Consensus 236 dP~-N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~-k~lv~N~V~~~ 312 (559)
T PF13199_consen 236 DPG-NPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPD-KYLVFNAVSGY 312 (559)
T ss_dssp -TT--HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTT-SEEEEB-GGGT
T ss_pred cCC-CHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCC-CceeeeccCcc
Confidence 444 4568989999999999999999999994322 11 146799999999999844 33444455443
No 46
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.31 E-value=67 Score=30.43 Aligned_cols=118 Identities=14% Similarity=0.252 Sum_probs=67.2
Q ss_pred HHH-HHHHHHHHHcCCCeEEeecCC--CC---------------------CC--------hhhHHHHHHHHHHHHhhCCC
Q 021511 139 NAV-ASLTSIIKEYNLDGIDIDYEH--FQ---------------------AD--------PNTFAECIGRLIKTLKKNGA 186 (311)
Q Consensus 139 ~~i-~si~~~~~~~g~DGiDiD~E~--~~---------------------~d--------~~~~~~~l~~Lr~~l~~~~~ 186 (311)
.|+ +-+++.+++|..|||-||--+ |. .+ +++.++|++++...+++-+.
T Consensus 185 ~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp 264 (418)
T COG1649 185 DFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKP 264 (418)
T ss_pred HHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCC
Confidence 344 556689999999999998432 20 11 24677899999999888776
Q ss_pred eEEEEeCCCC-CchhhhhHH------HHHHhhCCeeeEEEecccCCCCC--CCHHHHHHHHHHhhcCCCCCcEEEceecC
Q 021511 187 ISFASIAPYD-DDQVQSHYL------ALWKSYGDLIDYVNFQFYAYAQG--TSVSQFMDYFKTQSSNYKGGKVLVSFISD 257 (311)
Q Consensus 187 ~~~a~~~p~~-~~~~~~~y~------~~~~~~~d~id~~~~~~y~~~~~--~~~~~~~~~~~~~~~~~p~~KivlG~p~~ 257 (311)
-...+++|.. .....-.|. ....+ ..+||.+..|.|-.-.. ...+.....|.+.... -+-.|..|+..+
T Consensus 265 ~v~~svsp~n~~~~~~f~y~~~~qDw~~Wv~-~G~iD~l~pqvYr~~~~~~~~~~~~~~~wa~~~~~-~~i~i~~G~~~~ 342 (418)
T COG1649 265 NVKFSVSPFNPLGSATFAYDYFLQDWRRWVR-QGLIDELAPQVYRTLSTFVAEYDTLAKWWANTVIP-TRIGIYIGLAAY 342 (418)
T ss_pred CeEEEEccCCCCCccceehhhhhhhHHHHHH-cccHhhhhhhhhcccccchhhhhhHHHHhhhhhcc-cceeeecchhhc
Confidence 5555556621 111001221 22333 55788888888854111 1223333445443221 133567777766
Q ss_pred C
Q 021511 258 G 258 (311)
Q Consensus 258 ~ 258 (311)
.
T Consensus 343 ~ 343 (418)
T COG1649 343 K 343 (418)
T ss_pred c
Confidence 5
No 47
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=74.78 E-value=75 Score=29.79 Aligned_cols=52 Identities=13% Similarity=0.315 Sum_probs=35.6
Q ss_pred HHHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC
Q 021511 97 PSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ 164 (311)
Q Consensus 97 ~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~ 164 (311)
.+.+..+|++.+++.+++||.|.. +.++|+ .+++.+++.|.|+|+|++-.|.
T Consensus 101 l~~i~~~k~~~~~~pvIaSi~~~~-----------s~~~~~-----~~a~~~e~~GaD~iELNiSCPn 152 (385)
T PLN02495 101 LAEFKQLKEEYPDRILIASIMEEY-----------NKDAWE-----EIIERVEETGVDALEINFSCPH 152 (385)
T ss_pred HHHHHHHHhhCCCCcEEEEccCCC-----------CHHHHH-----HHHHHHHhcCCCEEEEECCCCC
Confidence 345566776667889999996532 123332 2336777889999999998773
No 48
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=69.10 E-value=9.8 Score=34.01 Aligned_cols=79 Identities=14% Similarity=0.238 Sum_probs=47.5
Q ss_pred HHHHHHHHcCCCeEEeecC-CCCC----------------C-hhhHHHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhh-
Q 021511 143 SLTSIIKEYNLDGIDIDYE-HFQA----------------D-PNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSH- 203 (311)
Q Consensus 143 si~~~~~~~g~DGiDiD~E-~~~~----------------d-~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~- 203 (311)
+|++-+.++|||-|-||+- +|.+ + .+.+..||.--|++|. .-.++.+-.+..+.....
T Consensus 200 tIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~---vpIS~DIYG~nGw~~t~~~ 276 (400)
T COG1306 200 TIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELE---VPISADIYGQNGWSSTDMA 276 (400)
T ss_pred HHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhcc---cceEEEeecccCccCCcch
Confidence 5778888999999999974 5521 1 1345566666666664 223333333222211122
Q ss_pred HHHHHHhhCCeeeEEEecccC
Q 021511 204 YLALWKSYGDLIDYVNFQFYA 224 (311)
Q Consensus 204 y~~~~~~~~d~id~~~~~~y~ 224 (311)
-.+.+..+.++||++.-|||-
T Consensus 277 ~GQ~~e~ls~yVDvIsPMfYP 297 (400)
T COG1306 277 LGQFWEALSSYVDVISPMFYP 297 (400)
T ss_pred hhhhHHHHHhhhhhccccccc
Confidence 124556778888999999983
No 49
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=68.74 E-value=33 Score=32.44 Aligned_cols=80 Identities=11% Similarity=0.228 Sum_probs=47.5
Q ss_pred HHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC------------C
Q 021511 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ------------A 165 (311)
Q Consensus 98 ~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~------------~ 165 (311)
+.++.+++..++..+++||.|... .+++. ..+..+++.|.|+|||+.-.|. .
T Consensus 88 ~~~~~~~~~~~~~p~i~si~g~~~-----------~~~~~-----~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~ 151 (420)
T PRK08318 88 REIRRVKRDYPDRALIASIMVECN-----------EEEWK-----EIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQ 151 (420)
T ss_pred HHHHHHHhhCCCceEEEEeccCCC-----------HHHHH-----HHHHHHHhcCCCEEEEeCCCCCCccccCCcccccC
Confidence 344455554445678899986511 12222 2336667789999999999874 2
Q ss_pred ChhhHHHHHHHHHHHHhhCCCeEEEEeCCCC
Q 021511 166 DPNTFAECIGRLIKTLKKNGAISFASIAPYD 196 (311)
Q Consensus 166 d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~ 196 (311)
+.+.+..+++++++.. ..-+++-++|..
T Consensus 152 ~~~~~~~i~~~v~~~~---~~Pv~vKl~p~~ 179 (420)
T PRK08318 152 VPELVEMYTRWVKRGS---RLPVIVKLTPNI 179 (420)
T ss_pred CHHHHHHHHHHHHhcc---CCcEEEEcCCCc
Confidence 3445566666666543 234555556643
No 50
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=68.65 E-value=92 Score=28.20 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=27.5
Q ss_pred CCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCC
Q 021511 108 SNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHF 163 (311)
Q Consensus 108 ~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~ 163 (311)
.+..+.+.|+|.+.. .++ ..+..+++.|+|||||+.-.|
T Consensus 61 ~~~p~i~ql~g~~~~----------------~~~-~aa~~~~~~G~d~IelN~gcP 99 (319)
T TIGR00737 61 DETPISVQLFGSDPD----------------TMA-EAAKINEELGADIIDINMGCP 99 (319)
T ss_pred ccceEEEEEeCCCHH----------------HHH-HHHHHHHhCCCCEEEEECCCC
Confidence 467788999886432 122 223577889999999998776
No 51
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=67.16 E-value=40 Score=36.14 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEeecCC
Q 021511 134 DTWVSNAVASLTSIIKEYNLDGIDIDYEH 162 (311)
Q Consensus 134 ~~~~~~~i~si~~~~~~~g~DGiDiD~E~ 162 (311)
...|+-+++++.-|+++|++||+-||.-.
T Consensus 617 ~~vrk~iiDsl~yWv~ey~VDGFRfDl~g 645 (1111)
T TIGR02102 617 EMSRRILVDSIKYLVDEFKVDGFRFDMMG 645 (1111)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEeccc
Confidence 45566678899999999999999999753
No 52
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=66.77 E-value=13 Score=34.92 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=52.7
Q ss_pred CCcEEEEEE-CCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC--CChhhHHHHHHHHHHHHhhC
Q 021511 108 SNVKVALSL-GGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ--ADPNTFAECIGRLIKTLKKN 184 (311)
Q Consensus 108 ~g~kvllsi-GG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~--~d~~~~~~~l~~Lr~~l~~~ 184 (311)
.|+||+-.+ -.|..+... -..-.+.++.++..++.++++.+-+||||-=|+.|.-- ..-.++..|++.|.+++++.
T Consensus 123 HGV~vlGTFItEw~eg~~~-c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i~~~~i~~l~~F~~~Lt~~~~~~ 201 (526)
T KOG2331|consen 123 HGVKVLGTFITEWDEGKAT-CKEFLATEESVEMTVERLVELARFFGFDGWLINIENKIDLAKIPNLIQFVSHLTKVLHSS 201 (526)
T ss_pred cCceeeeeEEEEeccchhH-HHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeeccChhhCccHHHHHHHHHHHHhhc
Confidence 499998654 445543221 00111223335678888889999999999999999752 23478999999999999875
No 53
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=66.75 E-value=48 Score=29.76 Aligned_cols=79 Identities=13% Similarity=0.252 Sum_probs=47.2
Q ss_pred HHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC------------C
Q 021511 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ------------A 165 (311)
Q Consensus 98 ~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~------------~ 165 (311)
+.+..+++..++..+++|+.|.. +.+. ++ .+++.+++.+.|+|||++-.|. .
T Consensus 88 ~~~~~~~~~~~~~p~i~si~G~~-----------~~~~----~~-~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~ 151 (299)
T cd02940 88 KEIRELKKDFPDKILIASIMCEY-----------NKED----WT-ELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQ 151 (299)
T ss_pred HHHHHHHhhCCCCeEEEEecCCC-----------CHHH----HH-HHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhcc
Confidence 34555555444677899997751 1122 23 2235667789999999999873 2
Q ss_pred ChhhHHHHHHHHHHHHhhCCCeEEEEeCCC
Q 021511 166 DPNTFAECIGRLIKTLKKNGAISFASIAPY 195 (311)
Q Consensus 166 d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~ 195 (311)
+.+.+.++++++|+.. ..-+++-+.|.
T Consensus 152 ~~~~~~~iv~~v~~~~---~~Pv~vKl~~~ 178 (299)
T cd02940 152 DPELVEEICRWVREAV---KIPVIAKLTPN 178 (299)
T ss_pred CHHHHHHHHHHHHHhc---CCCeEEECCCC
Confidence 3345566666666543 23455555653
No 54
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=65.83 E-value=89 Score=27.04 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=78.3
Q ss_pred HHcCCCeEEeecCCCCC--ChhhHHHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhhHHHHHHhhCCeeeEEEecccCCC
Q 021511 149 KEYNLDGIDIDYEHFQA--DPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGDLIDYVNFQFYAYA 226 (311)
Q Consensus 149 ~~~g~DGiDiD~E~~~~--d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~y~~~~~~~~d~id~~~~~~y~~~ 226 (311)
.+-|.|=| |...|.+ =..++...++++++..+.. ..+++++.-.+.. ........+....--+||+-+-+|+..
T Consensus 17 ~~~gaDiI--D~K~P~~GaLGA~~~~vi~~i~~~~~~~-~pvSAtiGDlp~~-p~~~~~aa~~~a~~GvdyvKvGl~g~~ 92 (235)
T PF04476_consen 17 LAGGADII--DLKNPAEGALGALFPWVIREIVAAVPGR-KPVSATIGDLPMK-PGTASLAALGAAATGVDYVKVGLFGCK 92 (235)
T ss_pred HhCCCCEE--EccCCCCCCCCCCCHHHHHHHHHHcCCC-CceEEEecCCCCC-chHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 34455554 4577743 2367888899998887554 4455554332211 111112223333445888888888643
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCcEEEceecCC--CCCCCChhhHHHHHHHHhcCCCCCeEEEEeeeCCCCCCcee--chh
Q 021511 227 QGTSVSQFMDYFKTQSSNYKGGKVLVSFISDG--SGGLAPGDGFFTACSRLKSQKQLHGIFVWSADDSKKNGFRY--EKQ 302 (311)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~KivlG~p~~~--~~g~~~~~~~~~~~~~~~~~~~~~Gvm~W~~~~d~~~~~~~--~~~ 302 (311)
....+-+.++......+.+..++.++.+-... .-+..++-.+ ..+..+.++.|+|+=....|..+=|.+ .+.
T Consensus 93 ~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l----~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~ 168 (235)
T PF04476_consen 93 DYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDL----PEIAAEAGFDGVMLDTADKDGGSLFDHLSEEE 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHH----HHHHHHcCCCEEEEecccCCCCchhhcCCHHH
Confidence 33222222233333334455666666554333 1112222222 233335679999999988887663332 344
Q ss_pred HHHHHh
Q 021511 303 SQALLA 308 (311)
Q Consensus 303 ~~~~l~ 308 (311)
++++++
T Consensus 169 L~~Fv~ 174 (235)
T PF04476_consen 169 LAEFVA 174 (235)
T ss_pred HHHHHH
Confidence 555554
No 55
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=64.67 E-value=42 Score=29.82 Aligned_cols=80 Identities=13% Similarity=0.187 Sum_probs=46.4
Q ss_pred HHHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHH
Q 021511 97 PSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGR 176 (311)
Q Consensus 97 ~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~ 176 (311)
.+-++..|+ +||+|+|-.--.+... ..+ ..+. .+...+.+++.|+.||-+||-.. |.+..+++..+
T Consensus 76 ~elv~Ya~~--KgVgi~lw~~~~~~~~---~~~------~~~~-~~~~f~~~~~~Gv~GvKidF~~~--d~Q~~v~~y~~ 141 (273)
T PF10566_consen 76 PELVDYAKE--KGVGIWLWYHSETGGN---VAN------LEKQ-LDEAFKLYAKWGVKGVKIDFMDR--DDQEMVNWYED 141 (273)
T ss_dssp HHHHHHHHH--TT-EEEEEEECCHTTB---HHH------HHCC-HHHHHHHHHHCTEEEEEEE--SS--TSHHHHHHHHH
T ss_pred HHHHHHHHH--cCCCEEEEEeCCcchh---hHh------HHHH-HHHHHHHHHHcCCCEEeeCcCCC--CCHHHHHHHHH
Confidence 444555677 6899988664332211 000 1111 14444899999999999998764 66777777777
Q ss_pred HHHHHhhCCCeEEE
Q 021511 177 LIKTLKKNGAISFA 190 (311)
Q Consensus 177 Lr~~l~~~~~~~~a 190 (311)
+-+...+.++++-.
T Consensus 142 i~~~AA~~~Lmvnf 155 (273)
T PF10566_consen 142 ILEDAAEYKLMVNF 155 (273)
T ss_dssp HHHHHHHTT-EEEE
T ss_pred HHHHHHHcCcEEEe
Confidence 77766665554444
No 56
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=64.40 E-value=1.2e+02 Score=27.92 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=55.9
Q ss_pred CCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC-------CChhhHHHHHHHHHHH
Q 021511 108 SNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ-------ADPNTFAECIGRLIKT 180 (311)
Q Consensus 108 ~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~-------~d~~~~~~~l~~Lr~~ 180 (311)
.++.|++||+|..... ....-+ .|+..+ +.+.. +.|++++++-.|. ++.+.+.++++++|+.
T Consensus 136 ~~~pvivsI~~~~~~~-----~~~~~~----d~~~~~-~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~ 204 (344)
T PRK05286 136 RGIPLGINIGKNKDTP-----LEDAVD----DYLICL-EKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEA 204 (344)
T ss_pred CCCcEEEEEecCCCCC-----cccCHH----HHHHHH-HHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH
Confidence 4678999998864321 111223 344333 23333 4999999998773 2456778888999988
Q ss_pred HhhC--CCeEEEEeCCCCCchhhhhHHHHH-HhhCCeeeEEE
Q 021511 181 LKKN--GAISFASIAPYDDDQVQSHYLALW-KSYGDLIDYVN 219 (311)
Q Consensus 181 l~~~--~~~~~a~~~p~~~~~~~~~y~~~~-~~~~d~id~~~ 219 (311)
.+.. ..-+++-+.|..+........+.+ ..-+|.|...+
T Consensus 205 ~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 205 QAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred HhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 7631 234555566643211111122333 33466666665
No 57
>PRK14706 glycogen branching enzyme; Provisional
Probab=61.64 E-value=34 Score=34.37 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEeec-CCC----------------CCChhhHHHHHHHHHHHHhhCC--CeEEE
Q 021511 133 VDTWVSNAVASLTSIIKEYNLDGIDIDY-EHF----------------QADPNTFAECIGRLIKTLKKNG--AISFA 190 (311)
Q Consensus 133 ~~~~~~~~i~si~~~~~~~g~DGiDiD~-E~~----------------~~d~~~~~~~l~~Lr~~l~~~~--~~~~a 190 (311)
+.+-++-+++++.-++++|++||+-+|- ... ......=..|+++|++.+++.. .+++|
T Consensus 280 ~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iA 356 (639)
T PRK14706 280 RNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIA 356 (639)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 4556667788898999999999999993 221 0111223568888888887643 35555
No 58
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=61.21 E-value=1.2e+02 Score=27.08 Aligned_cols=78 Identities=13% Similarity=0.103 Sum_probs=46.3
Q ss_pred HHHHHHHhhC--CCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHc---CCCeEEeecCCCC--------
Q 021511 98 SQVSAIKNRH--SNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEY---NLDGIDIDYEHFQ-------- 164 (311)
Q Consensus 98 ~~i~~lk~~~--~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~---g~DGiDiD~E~~~-------- 164 (311)
+.++..+++. .+.-+++||+|. . ++ +++.+ +.+.+. +.|+|||+.-.|.
T Consensus 78 ~~i~~~~~~~~~~~~pvivsi~g~-~------------~~----~~~~~-~~~~~~~~~~ad~ielN~sCPn~~~~~~~~ 139 (294)
T cd04741 78 EYIRTISDGLPGSAKPFFISVTGS-A------------ED----IAAMY-KKIAAHQKQFPLAMELNLSCPNVPGKPPPA 139 (294)
T ss_pred HHHHHHhhhccccCCeEEEECCCC-H------------HH----HHHHH-HHHHhhccccccEEEEECCCCCCCCccccc
Confidence 4444444321 467889999865 2 12 22222 333443 6999999998873
Q ss_pred CChhhHHHHHHHHHHHHhhCCCeEEEEeCCCC
Q 021511 165 ADPNTFAECIGRLIKTLKKNGAISFASIAPYD 196 (311)
Q Consensus 165 ~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~ 196 (311)
.|.+.+.++++++|+.. ..-+++-++|..
T Consensus 140 ~~~~~~~~i~~~v~~~~---~iPv~vKl~p~~ 168 (294)
T cd04741 140 YDFDATLEYLTAVKAAY---SIPVGVKTPPYT 168 (294)
T ss_pred CCHHHHHHHHHHHHHhc---CCCEEEEeCCCC
Confidence 24566667777777654 244566677754
No 59
>PRK12568 glycogen branching enzyme; Provisional
Probab=59.90 E-value=37 Score=34.61 Aligned_cols=58 Identities=17% Similarity=0.282 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEeec--------------CCCCC---ChhhH--HHHHHHHHHHHhhCC--CeEEE
Q 021511 133 VDTWVSNAVASLTSIIKEYNLDGIDIDY--------------EHFQA---DPNTF--AECIGRLIKTLKKNG--AISFA 190 (311)
Q Consensus 133 ~~~~~~~~i~si~~~~~~~g~DGiDiD~--------------E~~~~---d~~~~--~~~l~~Lr~~l~~~~--~~~~a 190 (311)
+.+-++-+++++.-++++|++||+-+|- |+.++ .++|+ ..|++++++.+++.. .++++
T Consensus 382 ~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IA 460 (730)
T PRK12568 382 RPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIA 460 (730)
T ss_pred CHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 3455667788999999999999999992 22111 12333 579999999988654 34444
No 60
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=59.75 E-value=82 Score=26.02 Aligned_cols=110 Identities=14% Similarity=0.136 Sum_probs=61.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC--CChhhHHHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhhHH
Q 021511 128 FNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ--ADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYL 205 (311)
Q Consensus 128 ~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~--~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~y~ 205 (311)
-+|.++++..+ . -+-|-|=| |-..|. +-..||.-.++++|+..+.. ...++++.-.+.. ....-.
T Consensus 5 vSPin~eEA~e-------A--ieGGAdIi--DVKNP~EGSLGANFPWvIr~i~Ev~p~d-~~vSAT~GDvpYK-PGT~sl 71 (235)
T COG1891 5 VSPINREEAIE-------A--IEGGADII--DVKNPAEGSLGANFPWVIREIREVVPED-QEVSATVGDVPYK-PGTASL 71 (235)
T ss_pred eccCCHHHHHH-------H--hhCCCceE--eccCcccCcccCCChHHHHHHHHhCccc-eeeeeeecCCCCC-CchHHH
Confidence 46667775332 1 12344444 557774 34589999999999887654 5555554332111 111113
Q ss_pred HHHHhhCCeeeEEEecccCCCCCCCHHHHHHH---HHHhhcCCCCCcEEEc
Q 021511 206 ALWKSYGDLIDYVNFQFYAYAQGTSVSQFMDY---FKTQSSNYKGGKVLVS 253 (311)
Q Consensus 206 ~~~~~~~d~id~~~~~~y~~~~~~~~~~~~~~---~~~~~~~~p~~KivlG 253 (311)
..+...+.-.|++-+-.|+. .+.++.++. .....+.+.++|+++.
T Consensus 72 AalGaav~GaDYiKVGLYg~---kn~~eA~e~m~~vvrAVkd~d~~k~VVA 119 (235)
T COG1891 72 AALGAAVAGADYIKVGLYGT---KNEEEALEVMKNVVRAVKDFDPSKKVVA 119 (235)
T ss_pred HHHHhHhhCCceEEEeeccc---ccHHHHHHHHHHHHHHHhccCCCceEEe
Confidence 44555555677888888863 333443333 3334567788888765
No 61
>PRK05402 glycogen branching enzyme; Provisional
Probab=59.42 E-value=37 Score=34.72 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEeec-CC--------------C----CCChhhHHHHHHHHHHHHhhCC--CeEEE
Q 021511 133 VDTWVSNAVASLTSIIKEYNLDGIDIDY-EH--------------F----QADPNTFAECIGRLIKTLKKNG--AISFA 190 (311)
Q Consensus 133 ~~~~~~~~i~si~~~~~~~g~DGiDiD~-E~--------------~----~~d~~~~~~~l~~Lr~~l~~~~--~~~~a 190 (311)
+.+.++-+++++.-++++|++||+-+|- .. | ..+...-..|++++++.++... .++++
T Consensus 378 ~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~lia 456 (726)
T PRK05402 378 RNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIA 456 (726)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 3455666778888899999999999993 11 1 0111234679999999887643 34444
No 62
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=59.23 E-value=1.3e+02 Score=26.79 Aligned_cols=51 Identities=10% Similarity=0.173 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCCeEEeecCCC-------C-----CChhhHHHHHHHHHHHHhhCCCeEEE
Q 021511 140 AVASLTSIIKEYNLDGIDIDYEHF-------Q-----ADPNTFAECIGRLIKTLKKNGAISFA 190 (311)
Q Consensus 140 ~i~si~~~~~~~g~DGiDiD~E~~-------~-----~d~~~~~~~l~~Lr~~l~~~~~~~~a 190 (311)
.+.+-.+-|.+-|||||=||+-.+ . .......+|+.++++..+....++.+
T Consensus 127 ii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~V 189 (300)
T COG2342 127 IIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPLFRV 189 (300)
T ss_pred HHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 444445666778999999997543 1 22345778888998888877655333
No 63
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=58.97 E-value=1.4e+02 Score=27.04 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=40.4
Q ss_pred CcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC-------------CChhhHHHHHH
Q 021511 109 NVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ-------------ADPNTFAECIG 175 (311)
Q Consensus 109 g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~-------------~d~~~~~~~l~ 175 (311)
+..+.+.|+|.+.. .|++.. ..+++.|+|||||+.=.|. .+.+-...+++
T Consensus 62 e~p~~vQl~g~~p~----------------~~~~aA-~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~ 124 (312)
T PRK10550 62 GTLVRIQLLGQYPQ----------------WLAENA-ARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 (312)
T ss_pred CCcEEEEeccCCHH----------------HHHHHH-HHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHH
Confidence 46688888875422 233322 4567789999999988872 23344455666
Q ss_pred HHHHHHhhCCCeEEEEeCC
Q 021511 176 RLIKTLKKNGAISFASIAP 194 (311)
Q Consensus 176 ~Lr~~l~~~~~~~~a~~~p 194 (311)
++|++.+. ..-+++-+..
T Consensus 125 avr~~~~~-~~pVsvKiR~ 142 (312)
T PRK10550 125 AMREAVPA-HLPVTVKVRL 142 (312)
T ss_pred HHHHhcCC-CcceEEEEEC
Confidence 66665532 2445554444
No 64
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=58.33 E-value=1.2e+02 Score=27.35 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeecC
Q 021511 135 TWVSNAVASLTSIIKEYNLDGIDIDYE 161 (311)
Q Consensus 135 ~~~~~~i~si~~~~~~~g~DGiDiD~E 161 (311)
+.++.|++.. +.+++-|||||+|.-=
T Consensus 138 ~~i~~~~~aA-~~a~~aGfDgveih~~ 163 (327)
T cd02803 138 QIIEDFAAAA-RRAKEAGFDGVEIHGA 163 (327)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEcch
Confidence 4455666544 4456689999999864
No 65
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=58.13 E-value=23 Score=25.03 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEeec
Q 021511 134 DTWVSNAVASLTSIIKEYNLDGIDIDY 160 (311)
Q Consensus 134 ~~~~~~~i~si~~~~~~~g~DGiDiD~ 160 (311)
+.+|+.+++.+++.+..-.+|||-+|-
T Consensus 49 ~~~r~~w~~~v~e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 49 PDYRRYWVDAVVEELQNSPWDGVFADN 75 (79)
T ss_pred chHHHHHHHHHHHHHhcCccceeeeec
Confidence 677778888898998877999999873
No 66
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=57.98 E-value=26 Score=30.86 Aligned_cols=47 Identities=11% Similarity=0.074 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCCeEEeecCCCCCC--h-hhHHHHHHHHHHHHhhCCCeEE
Q 021511 143 SLTSIIKEYNLDGIDIDYEHFQAD--P-NTFAECIGRLIKTLKKNGAISF 189 (311)
Q Consensus 143 si~~~~~~~g~DGiDiD~E~~~~d--~-~~~~~~l~~Lr~~l~~~~~~~~ 189 (311)
...+.+++.|||||+|....+... . +....-+.++++.+.+.++-+.
T Consensus 20 e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 20 ERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred HHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCce
Confidence 334789999999999975543211 1 1124568889999998886443
No 67
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=57.76 E-value=43 Score=33.49 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEeecC-CC-------------CCC-----hhhHHHHHHHHHHHHhhCC--CeEEE
Q 021511 133 VDTWVSNAVASLTSIIKEYNLDGIDIDYE-HF-------------QAD-----PNTFAECIGRLIKTLKKNG--AISFA 190 (311)
Q Consensus 133 ~~~~~~~~i~si~~~~~~~g~DGiDiD~E-~~-------------~~d-----~~~~~~~l~~Lr~~l~~~~--~~~~a 190 (311)
+.+-|+-+++++.-++++|++||+-||-- .. ++. ...=..|++++++.+++.. .++++
T Consensus 269 ~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~lia 347 (613)
T TIGR01515 269 RPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIA 347 (613)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 34556678888889999999999999952 10 000 1122468888888887643 34544
No 68
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=57.68 E-value=21 Score=27.35 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCCeEEeecCCCC-CChhhHHHHHHHHHHHHhhCC
Q 021511 141 VASLTSIIKEYNLDGIDIDYEHFQ-ADPNTFAECIGRLIKTLKKNG 185 (311)
Q Consensus 141 i~si~~~~~~~g~DGiDiD~E~~~-~d~~~~~~~l~~Lr~~l~~~~ 185 (311)
++.+.+++++.|++.--+++++.+ ++.+.|+..++|+-+++.+-+
T Consensus 80 ~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~lG 125 (132)
T COG1908 80 MELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKELG 125 (132)
T ss_pred HHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHhC
Confidence 456679999999999999998874 577899999999988876643
No 69
>PLN02960 alpha-amylase
Probab=57.54 E-value=40 Score=35.04 Aligned_cols=58 Identities=14% Similarity=0.069 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEeecC-------------------CCC-CChhhHHHHHHHHHHHHhhC--CCeEEE
Q 021511 133 VDTWVSNAVASLTSIIKEYNLDGIDIDYE-------------------HFQ-ADPNTFAECIGRLIKTLKKN--GAISFA 190 (311)
Q Consensus 133 ~~~~~~~~i~si~~~~~~~g~DGiDiD~E-------------------~~~-~d~~~~~~~l~~Lr~~l~~~--~~~~~a 190 (311)
+.+-++-+++++.-|+++|++||+-+|=- ++. .....-..||++|.+.+++. +.+++|
T Consensus 530 ~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIA 609 (897)
T PLN02960 530 DHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIA 609 (897)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEE
Confidence 34556667888889999999999999811 111 11123456777777776653 345555
No 70
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=57.04 E-value=24 Score=30.62 Aligned_cols=41 Identities=12% Similarity=0.057 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhCCCeEEE
Q 021511 142 ASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFA 190 (311)
Q Consensus 142 ~si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~~~~~~a 190 (311)
....+.+++.|||||++.+.+ + .-++++++.+...++-++.
T Consensus 17 ~e~~~~~~e~G~~~vEl~~~~---~-----~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 17 LERFAAAAQAGFTGVEYLFPY---D-----WDAEALKARLAAAGLEQVL 57 (254)
T ss_pred HHHHHHHHHcCCCEEEecCCc---c-----CCHHHHHHHHHHcCCeEEE
Confidence 344578899999999997632 1 2367788888887775444
No 71
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=56.19 E-value=40 Score=30.87 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=27.8
Q ss_pred CCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCC
Q 021511 108 SNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHF 163 (311)
Q Consensus 108 ~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~ 163 (311)
....+.+.|+|.+.. .|+ ..+..+++.|+|||||+.-.|
T Consensus 63 ~e~p~~vQl~g~~p~----------------~~~-~aA~~~~~~g~d~IdlN~gCP 101 (333)
T PRK11815 63 EEHPVALQLGGSDPA----------------DLA-EAAKLAEDWGYDEINLNVGCP 101 (333)
T ss_pred CCCcEEEEEeCCCHH----------------HHH-HHHHHHHhcCCCEEEEcCCCC
Confidence 356788888886432 233 233677889999999998877
No 72
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=55.24 E-value=82 Score=32.30 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeecCCC----C---CCh-----hhHHHHHHHHHHHHhhCCCeEEEEeCC
Q 021511 135 TWVSNAVASLTSIIKEYNLDGIDIDYEHF----Q---ADP-----NTFAECIGRLIKTLKKNGAISFASIAP 194 (311)
Q Consensus 135 ~~~~~~i~si~~~~~~~g~DGiDiD~E~~----~---~d~-----~~~~~~l~~Lr~~l~~~~~~~~a~~~p 194 (311)
+-+..|-+...++|..-|+|||-+|-... . .++ ..+..+-..+++.|..++.|....+++
T Consensus 465 ~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggRv~La~ay~~al~~Sv~r~F~~ng~I~CM~~~~ 536 (865)
T PLN02982 465 SQAGDFYDSMHSYLASVGITGVKVDVIHTLEYVCEEYGGRVELAKAYYDGLSESLAKNFNGTGIIASMQQCN 536 (865)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeecccCc
Confidence 34567999999999999999999997663 2 122 233344444555555555555555554
No 73
>PRK12313 glycogen branching enzyme; Provisional
Probab=54.75 E-value=50 Score=33.14 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEeecCC-------------CC-----CChhhHHHHHHHHHHHHhhCC--CeEEE
Q 021511 133 VDTWVSNAVASLTSIIKEYNLDGIDIDYEH-------------FQ-----ADPNTFAECIGRLIKTLKKNG--AISFA 190 (311)
Q Consensus 133 ~~~~~~~~i~si~~~~~~~g~DGiDiD~E~-------------~~-----~d~~~~~~~l~~Lr~~l~~~~--~~~~a 190 (311)
+.+.++-+++++.-++++|++||+-+|--. .+ .....=..|++++++.+++.. .++++
T Consensus 283 ~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~lia 360 (633)
T PRK12313 283 KNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIA 360 (633)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 345566678888888999999999999210 00 000122578999998887643 34544
No 74
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=54.62 E-value=1.1e+02 Score=28.01 Aligned_cols=82 Identities=13% Similarity=0.029 Sum_probs=47.0
Q ss_pred HHHHHHHHhhCCCcEEEEEECCCCCCCCceecCC-----------CchhHHHH-HHHHHHHHHHHHcCCCeEEeecCCCC
Q 021511 97 PSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNP-----------SSVDTWVS-NAVASLTSIIKEYNLDGIDIDYEHFQ 164 (311)
Q Consensus 97 ~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~-----------~~~~~~~~-~~i~si~~~~~~~g~DGiDiD~E~~~ 164 (311)
.+...+||+ .|+|+.+-...+........... ....++.+ ....++.+++.+|..|.+=+|.-.+.
T Consensus 141 ~El~~A~rk--~Glk~G~Y~S~~dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~ 218 (346)
T PF01120_consen 141 GELADACRK--YGLKFGLYYSPWDWHHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPD 218 (346)
T ss_dssp HHHHHHHHH--TT-EEEEEEESSSCCCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSC
T ss_pred HHHHHHHHH--cCCeEEEEecchHhcCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCc
Confidence 344456776 69999876665533221101111 11123333 56789999999999999999987763
Q ss_pred -CChhhHHHHHHHHHHH
Q 021511 165 -ADPNTFAECIGRLIKT 180 (311)
Q Consensus 165 -~d~~~~~~~l~~Lr~~ 180 (311)
.+...+..+.+.+|+.
T Consensus 219 ~~~~~~~~~~~~~i~~~ 235 (346)
T PF01120_consen 219 PDEDWDSAELYNWIRKL 235 (346)
T ss_dssp CCTHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHh
Confidence 3334445555544443
No 75
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=54.37 E-value=36 Score=29.99 Aligned_cols=42 Identities=10% Similarity=-0.010 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCCeEEeecCCCCCC--hhhHHHHHHHHHHHHhhC
Q 021511 143 SLTSIIKEYNLDGIDIDYEHFQAD--PNTFAECIGRLIKTLKKN 184 (311)
Q Consensus 143 si~~~~~~~g~DGiDiD~E~~~~d--~~~~~~~l~~Lr~~l~~~ 184 (311)
...+++++.|||||+|....+... ...-..-++++++.+.+.
T Consensus 14 ~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 57 (279)
T cd00019 14 NALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEG 57 (279)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHc
Confidence 344899999999999976554211 000124577777777776
No 76
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=54.12 E-value=33 Score=34.19 Aligned_cols=47 Identities=30% Similarity=0.384 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhC
Q 021511 133 VDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKN 184 (311)
Q Consensus 133 ~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~ 184 (311)
+...++-+++++.-++++||+||+-||.-.. -+ ..|++++++++++.
T Consensus 293 ~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~-~~----~~~~~~~~~~~~~~ 339 (605)
T TIGR02104 293 REMMRKFIVDSVLYWVKEYNIDGFRFDLMGI-HD----IETMNEIRKALNKI 339 (605)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEechhc-CC----HHHHHHHHHHHHhh
Confidence 3455666778888899999999999996522 12 23677777776654
No 77
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=53.20 E-value=67 Score=29.06 Aligned_cols=80 Identities=14% Similarity=0.090 Sum_probs=48.7
Q ss_pred HHHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcC-CCeEEeecCCCC--------CCh
Q 021511 97 PSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN-LDGIDIDYEHFQ--------ADP 167 (311)
Q Consensus 97 ~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g-~DGiDiD~E~~~--------~d~ 167 (311)
.+.+..+++..+++.+++||-|.+. +++. .++ +.+++.+ .|.|+|+.-.|. .|.
T Consensus 80 ~~~i~~~~~~~~~~pvI~Si~G~~~------------~~~~-~~a----~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~ 142 (310)
T PRK02506 80 LDYVLELQKKGPNKPHFLSVVGLSP------------EETH-TIL----KKIQASDFNGLVELNLSCPNVPGKPQIAYDF 142 (310)
T ss_pred HHHHHHHHhhcCCCCEEEEEEeCcH------------HHHH-HHH----HHHhhcCCCCEEEEECCCCCCCCccccccCH
Confidence 3445555554446889999976432 2222 233 4566777 899999998872 234
Q ss_pred hhHHHHHHHHHHHHhhCCCeEEEEeCCCC
Q 021511 168 NTFAECIGRLIKTLKKNGAISFASIAPYD 196 (311)
Q Consensus 168 ~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~ 196 (311)
+....+++++|+..+ .-+.+-++|..
T Consensus 143 ~~~~~i~~~v~~~~~---~Pv~vKlsp~~ 168 (310)
T PRK02506 143 ETTEQILEEVFTYFT---KPLGVKLPPYF 168 (310)
T ss_pred HHHHHHHHHHHHhcC---CccEEecCCCC
Confidence 556667777776543 23455666654
No 78
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=52.83 E-value=16 Score=26.92 Aligned_cols=6 Identities=33% Similarity=0.468 Sum_probs=3.0
Q ss_pred ChhhhHH
Q 021511 1 MAMNQIV 7 (311)
Q Consensus 1 ~~~~~~~ 7 (311)
|+ +|.+
T Consensus 1 Ma-SK~~ 6 (95)
T PF07172_consen 1 MA-SKAF 6 (95)
T ss_pred Cc-hhHH
Confidence 66 3443
No 79
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=51.46 E-value=1.9e+02 Score=26.29 Aligned_cols=85 Identities=13% Similarity=0.176 Sum_probs=48.7
Q ss_pred HHHHhhC-CCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC-------CChhhHHH
Q 021511 101 SAIKNRH-SNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ-------ADPNTFAE 172 (311)
Q Consensus 101 ~~lk~~~-~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~-------~d~~~~~~ 172 (311)
..+++.. .++.+++||+|..... -++..+.|++.+.. +.. ..|+|+|++-.|. .+.+.+.+
T Consensus 119 ~~l~~~~~~~~plivsi~g~~~~~---------~~~~~~d~~~~~~~-~~~-~ad~ielN~scP~~~g~~~~~~~~~~~~ 187 (327)
T cd04738 119 KRLKKRRPRGGPLGVNIGKNKDTP---------LEDAVEDYVIGVRK-LGP-YADYLVVNVSSPNTPGLRDLQGKEALRE 187 (327)
T ss_pred HHHHHhccCCCeEEEEEeCCCCCc---------ccccHHHHHHHHHH-HHh-hCCEEEEECCCCCCCccccccCHHHHHH
Confidence 4444322 3688999998875321 01111234433322 333 3899999997763 34467778
Q ss_pred HHHHHHHHHhh--CCCeEEEEeCCCC
Q 021511 173 CIGRLIKTLKK--NGAISFASIAPYD 196 (311)
Q Consensus 173 ~l~~Lr~~l~~--~~~~~~a~~~p~~ 196 (311)
+++++|+.... +..-+.+-+.|..
T Consensus 188 iv~av~~~~~~~~~~~Pv~vKl~~~~ 213 (327)
T cd04738 188 LLTAVKEERNKLGKKVPLLVKIAPDL 213 (327)
T ss_pred HHHHHHHHHhhcccCCCeEEEeCCCC
Confidence 88999888752 1234455555543
No 80
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=51.31 E-value=65 Score=32.76 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEeecCCC-CC---ChhhHHHHHHHHHH
Q 021511 133 VDTWVSNAVASLTSIIKEYNLDGIDIDYEHF-QA---DPNTFAECIGRLIK 179 (311)
Q Consensus 133 ~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~-~~---d~~~~~~~l~~Lr~ 179 (311)
+...++-+++++.-|+++||+||+-||.-.. .. +......|+++|++
T Consensus 315 ~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 315 HPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 3445666778888888999999999996432 11 11223456677765
No 81
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=51.30 E-value=69 Score=29.25 Aligned_cols=99 Identities=16% Similarity=0.306 Sum_probs=52.3
Q ss_pred HHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCCCh--------hh
Q 021511 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADP--------NT 169 (311)
Q Consensus 98 ~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~d~--------~~ 169 (311)
+.+..++++ .++.++++|+|.+. +++ + .++..+++.|+|+|+|++-.|+.+. +.
T Consensus 91 ~~i~~~~~~-~~~pvi~sI~g~~~------------~e~----~-~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~ 152 (334)
T PRK07565 91 ELIRRAKEA-VDIPVIASLNGSSA------------GGW----V-DYARQIEQAGADALELNIYYLPTDPDISGAEVEQR 152 (334)
T ss_pred HHHHHHHHh-cCCcEEEEeccCCH------------HHH----H-HHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHH
Confidence 344445443 36889999988421 222 2 2335667789999999986643211 23
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhhHHHHH-HhhCCeeeEEE
Q 021511 170 FAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALW-KSYGDLIDYVN 219 (311)
Q Consensus 170 ~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~y~~~~-~~~~d~id~~~ 219 (311)
+..+++++++.. ..-+++-..|.... . ......+ ..-+|.|...+
T Consensus 153 ~~eil~~v~~~~---~iPV~vKl~p~~~~-~-~~~a~~l~~~G~dgI~~~n 198 (334)
T PRK07565 153 YLDILRAVKSAV---SIPVAVKLSPYFSN-L-ANMAKRLDAAGADGLVLFN 198 (334)
T ss_pred HHHHHHHHHhcc---CCcEEEEeCCCchh-H-HHHHHHHHHcCCCeEEEEC
Confidence 555666666543 23344444553211 1 1122223 34466666554
No 82
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=50.94 E-value=54 Score=29.84 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=41.6
Q ss_pred CCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC-------------CChhhHHHHH
Q 021511 108 SNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ-------------ADPNTFAECI 174 (311)
Q Consensus 108 ~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~-------------~d~~~~~~~l 174 (311)
....+.+.|+|.+.. .|+ ..+..++++|+|+|||+.=-|. .+.+...+++
T Consensus 53 ~e~p~~vQl~g~~p~----------------~~~-~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv 115 (318)
T TIGR00742 53 EESPVALQLGGSDPN----------------DLA-KCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCV 115 (318)
T ss_pred CCCcEEEEEccCCHH----------------HHH-HHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHH
Confidence 356688888876432 122 2336777899999999998772 2334456677
Q ss_pred HHHHHHHhhCCCeEEEEeCC
Q 021511 175 GRLIKTLKKNGAISFASIAP 194 (311)
Q Consensus 175 ~~Lr~~l~~~~~~~~a~~~p 194 (311)
+++++..+ .-+++-+..
T Consensus 116 ~av~~~~~---~PVsvKiR~ 132 (318)
T TIGR00742 116 KAMQEAVN---IPVTVKHRI 132 (318)
T ss_pred HHHHHHhC---CCeEEEEec
Confidence 77776652 334454443
No 83
>PRK01060 endonuclease IV; Provisional
Probab=50.00 E-value=45 Score=29.33 Aligned_cols=45 Identities=13% Similarity=-0.089 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCCeEEeecCCCCCC--hhhHHHHHHHHHHHHhhCCCe
Q 021511 143 SLTSIIKEYNLDGIDIDYEHFQAD--PNTFAECIGRLIKTLKKNGAI 187 (311)
Q Consensus 143 si~~~~~~~g~DGiDiD~E~~~~d--~~~~~~~l~~Lr~~l~~~~~~ 187 (311)
..++.+++.|||||+|..+.|... ...-...++++|+.+.+.++-
T Consensus 16 ~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~ 62 (281)
T PRK01060 16 GAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGIS 62 (281)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCC
Confidence 344889999999999987766321 122334578888888887763
No 84
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=49.81 E-value=43 Score=35.05 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhC
Q 021511 133 VDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKN 184 (311)
Q Consensus 133 ~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~ 184 (311)
+...++-+++++.-|+++|++||+-||.-.-- + ..+++++|+++++.
T Consensus 470 ~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~-~----~~f~~~~~~~l~~i 516 (898)
T TIGR02103 470 HRMMAKLIVDSLVVWAKDYKVDGFRFDLMGHH-P----KAQMLAAREAIKAL 516 (898)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEechhhC-C----HHHHHHHHHHHHHh
Confidence 34556678899999999999999999976321 2 23556666665553
No 85
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=49.43 E-value=2.1e+02 Score=26.08 Aligned_cols=99 Identities=17% Similarity=0.280 Sum_probs=52.0
Q ss_pred HHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCCCh--------hh
Q 021511 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADP--------NT 169 (311)
Q Consensus 98 ~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~d~--------~~ 169 (311)
+.+..++++ .+..|++||.|.+ .+++. .++..+++.|+|+|+|+.-.+..+. +.
T Consensus 89 ~~i~~~~~~-~~~pvi~si~g~~------------~~~~~-----~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~ 150 (325)
T cd04739 89 ELIRRAKRA-VSIPVIASLNGVS------------AGGWV-----DYARQIEEAGADALELNIYALPTDPDISGAEVEQR 150 (325)
T ss_pred HHHHHHHhc-cCCeEEEEeCCCC------------HHHHH-----HHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHH
Confidence 444444432 3678999997632 12222 2336677789999999997642211 23
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhhHHHH-HHhhCCeeeEEE
Q 021511 170 FAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLAL-WKSYGDLIDYVN 219 (311)
Q Consensus 170 ~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~y~~~-~~~~~d~id~~~ 219 (311)
+.++++++|+.. ..-+++-..|.... . ....+. ...-+|.|.+.+
T Consensus 151 ~~eiv~~v~~~~---~iPv~vKl~p~~~~-~-~~~a~~l~~~Gadgi~~~n 196 (325)
T cd04739 151 YLDILRAVKSAV---TIPVAVKLSPFFSA-L-AHMAKQLDAAGADGLVLFN 196 (325)
T ss_pred HHHHHHHHHhcc---CCCEEEEcCCCccC-H-HHHHHHHHHcCCCeEEEEc
Confidence 345555555543 23455555554321 1 112222 233466666655
No 86
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=49.13 E-value=47 Score=29.24 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=30.2
Q ss_pred HHHHHHHcCCCeEEeecCCCCCChh--h-HHHHHHHHHHHHhhCCCeE
Q 021511 144 LTSIIKEYNLDGIDIDYEHFQADPN--T-FAECIGRLIKTLKKNGAIS 188 (311)
Q Consensus 144 i~~~~~~~g~DGiDiD~E~~~~d~~--~-~~~~l~~Lr~~l~~~~~~~ 188 (311)
..+.+++.|||||+|..+.+..... . -...+.++++.+++.++-+
T Consensus 26 ~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i 73 (283)
T PRK13209 26 KLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRV 73 (283)
T ss_pred HHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCce
Confidence 3478899999999997654321111 1 2345788888888887644
No 87
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=48.40 E-value=97 Score=28.49 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=45.9
Q ss_pred CCHHHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCC--CCCChhhHHH
Q 021511 95 LSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEH--FQADPNTFAE 172 (311)
Q Consensus 95 ~~~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~--~~~d~~~~~~ 172 (311)
...+.++.+++ .|+. -+|||=.+.+... .....|..-.+.. ...++.+++.||+-|.+|+-+ |.++.+.+.+
T Consensus 96 ~~~e~l~~l~~--~Gvn-RiSiGvQS~~~~~--L~~lgR~~~~~~~-~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~ 169 (350)
T PRK08446 96 ATKAWLKGMKN--LGVN-RISFGVQSFNEDK--LKFLGRIHSQKQI-IKAIENAKKAGFENISIDLIYDTPLDNKKLLKE 169 (350)
T ss_pred CCHHHHHHHHH--cCCC-EEEEecccCCHHH--HHHcCCCCCHHHH-HHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHH
Confidence 44678888887 5665 5677766655421 1111222112223 345588999999988888776 5555555555
Q ss_pred HHHHHH
Q 021511 173 CIGRLI 178 (311)
Q Consensus 173 ~l~~Lr 178 (311)
-++.+.
T Consensus 170 ~l~~~~ 175 (350)
T PRK08446 170 ELKLAK 175 (350)
T ss_pred HHHHHH
Confidence 554443
No 88
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=48.25 E-value=47 Score=29.13 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCCeEEeecCCCCCCh--hhH-HHHHHHHHHHHhhCCCeEE
Q 021511 143 SLTSIIKEYNLDGIDIDYEHFQADP--NTF-AECIGRLIKTLKKNGAISF 189 (311)
Q Consensus 143 si~~~~~~~g~DGiDiD~E~~~~d~--~~~-~~~l~~Lr~~l~~~~~~~~ 189 (311)
..++.+++.|||||+|....+.... ..+ ..-++++++.+++.++-+.
T Consensus 20 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~ 69 (284)
T PRK13210 20 ERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIP 69 (284)
T ss_pred HHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCce
Confidence 3448899999999999754331110 111 2357889999999886443
No 89
>PRK02227 hypothetical protein; Provisional
Probab=47.66 E-value=1.9e+02 Score=25.16 Aligned_cols=147 Identities=16% Similarity=0.137 Sum_probs=77.0
Q ss_pred cCCCeEEeecCCCCC--ChhhHHHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhhHHHHHHhhCCeeeEEEecccCCCCC
Q 021511 151 YNLDGIDIDYEHFQA--DPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGDLIDYVNFQFYAYAQG 228 (311)
Q Consensus 151 ~g~DGiDiD~E~~~~--d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~y~~~~~~~~d~id~~~~~~y~~~~~ 228 (311)
-|-|=| |...|.+ =..++...++|+++..+... .+++++.-.+.. ....-...+....--+||+-+-.|+..
T Consensus 19 ~GaDiI--DvK~P~~GaLGA~~p~vir~Iv~~~~~~~-pvSAtiGD~p~~-p~~~~~aa~~~a~~GvDyVKvGl~~~~-- 92 (238)
T PRK02227 19 GGADII--DVKNPKEGSLGANFPWVIREIVAAVPGRK-PVSATIGDVPYK-PGTISLAALGAAATGADYVKVGLYGGK-- 92 (238)
T ss_pred cCCCEE--EccCCCCCCCCCCCHHHHHHHHHHhCCCC-CceeeccCCCCC-chHHHHHHHHHHhhCCCEEEEcCCCCC--
Confidence 344444 5677743 34789999999999988654 444544321111 111122333333334778877777433
Q ss_pred CCHHHHHHHHHH---hhcCCCCCcEEEceecCC--CCCCCChhhHHHHHHHHhcCCCCCeEEEEeeeCCCCCCcee--ch
Q 021511 229 TSVSQFMDYFKT---QSSNYKGGKVLVSFISDG--SGGLAPGDGFFTACSRLKSQKQLHGIFVWSADDSKKNGFRY--EK 301 (311)
Q Consensus 229 ~~~~~~~~~~~~---~~~~~p~~KivlG~p~~~--~~g~~~~~~~~~~~~~~~~~~~~~Gvm~W~~~~d~~~~~~~--~~ 301 (311)
+.+..++.+.. ..+.+++++.++.+-... .-+..++.. +..+..+.++.|+|+=....|..+=|.+ .+
T Consensus 93 -~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~----l~~~a~~aGf~g~MlDTa~Kdg~~Lfd~l~~~ 167 (238)
T PRK02227 93 -TAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLS----LPAIAADAGFDGAMLDTAIKDGKSLFDHMDEE 167 (238)
T ss_pred -cHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHH----HHHHHHHcCCCEEEEecccCCCcchHhhCCHH
Confidence 23344444433 233445666666654332 112222222 2334445689999998888776653332 23
Q ss_pred hHHHHHh
Q 021511 302 QSQALLA 308 (311)
Q Consensus 302 ~~~~~l~ 308 (311)
.++++++
T Consensus 168 ~L~~Fv~ 174 (238)
T PRK02227 168 ELAEFVA 174 (238)
T ss_pred HHHHHHH
Confidence 4444443
No 90
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=44.09 E-value=3.6e+02 Score=27.40 Aligned_cols=140 Identities=11% Similarity=0.121 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHc-CCCeEEeec-------CCCC--------------------CCh-----------hhHHHHHHHHHH
Q 021511 139 NAVASLTSIIKEY-NLDGIDIDY-------EHFQ--------------------ADP-----------NTFAECIGRLIK 179 (311)
Q Consensus 139 ~~i~si~~~~~~~-g~DGiDiD~-------E~~~--------------------~d~-----------~~~~~~l~~Lr~ 179 (311)
+.|.+|.+=|.+| .||||=|.= |.-+ .+. +.+..|..||+.
T Consensus 444 ~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~~~w~~~k~~~l~~f~~~l~~ 523 (672)
T PRK14581 444 QRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMMQRWTRYKSKYLIDFTNELTR 523 (672)
T ss_pred HHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888777777 799998743 3211 111 235578888888
Q ss_pred HHhhCC--CeEEE-Ee--CCCCCchhhhhHHHHHHhhCCeeeEEEecccCCCC---CCCHHHHHHHHHHhhcCCC--CCc
Q 021511 180 TLKKNG--AISFA-SI--APYDDDQVQSHYLALWKSYGDLIDYVNFQFYAYAQ---GTSVSQFMDYFKTQSSNYK--GGK 249 (311)
Q Consensus 180 ~l~~~~--~~~~a-~~--~p~~~~~~~~~y~~~~~~~~d~id~~~~~~y~~~~---~~~~~~~~~~~~~~~~~~p--~~K 249 (311)
..++.. .+.+| .+ .|-..+....+|.+.+.......|+.++|.+-+-. ....+.+.....+..+..| .+|
T Consensus 524 ~v~~~~~p~~~tarniya~~~l~p~~~~w~aQ~l~~~~~~yD~~a~mamp~me~~~~~~~~~w~~~l~~~v~~~~~~~~k 603 (672)
T PRK14581 524 EVRDIRGPQVKSARNIFAMPILEPESEAWFAQNLDDFLANYDWVAPMAMPLMEKVPLSESNEWLAELVNKVAQRPGALEK 603 (672)
T ss_pred HHHhhcCccceehhcccccccCChhHHHHHHhHHHHHHhhcchhHHhhchhhhccccccHHHHHHHHHHHHHhcCCcccc
Confidence 887632 23333 11 11112223456767777777788888888884322 2223433333333222234 589
Q ss_pred EEEceecCCCC-----CCCChhhHHHHHHHHhcC
Q 021511 250 VLVSFISDGSG-----GLAPGDGFFTACSRLKSQ 278 (311)
Q Consensus 250 ivlG~p~~~~~-----g~~~~~~~~~~~~~~~~~ 278 (311)
+|+=+.+-.+. ...+.+++...++.++..
T Consensus 604 ~vfelQ~~dw~~~~~~~~i~~~~l~~~m~~l~~~ 637 (672)
T PRK14581 604 TVFELQSKDWTQPEGNNAISGPILAGWMRQLQLS 637 (672)
T ss_pred eEEEeecccccCCCccCCCCHHHHHHHHHHHHHc
Confidence 99999886522 247778888888888855
No 91
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=43.36 E-value=2.2e+02 Score=24.63 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=45.8
Q ss_pred HHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC-------------
Q 021511 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ------------- 164 (311)
Q Consensus 98 ~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~------------- 164 (311)
+++..++ .+.++++++|+.+.. ++ + .+.+.+.+ ++|+|||+.-.|.
T Consensus 59 ~e~~~~~---~~~~vivnv~~~~~e------------e~----~-~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll 117 (231)
T TIGR00736 59 EQIKKAE---SRALVSVNVRFVDLE------------EA----Y-DVLLTIAE-HADIIEINAHCRQPEITEIGIGQELL 117 (231)
T ss_pred HHHHHHh---hcCCEEEEEecCCHH------------HH----H-HHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhc
Confidence 3444554 356899999986432 21 1 22255555 6999999998873
Q ss_pred CChhhHHHHHHHHHHHHhhCCCeEEEEeCCCC
Q 021511 165 ADPNTFAECIGRLIKTLKKNGAISFASIAPYD 196 (311)
Q Consensus 165 ~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~ 196 (311)
.|.+....++++++ ..+.-+++-+.+..
T Consensus 118 ~dp~~l~~iv~av~----~~~~PVsvKiR~~~ 145 (231)
T TIGR00736 118 KNKELLKEFLTKMK----ELNKPIFVKIRGNC 145 (231)
T ss_pred CCHHHHHHHHHHHH----cCCCcEEEEeCCCC
Confidence 25566666677766 22455666666643
No 92
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=43.35 E-value=2.5e+02 Score=25.41 Aligned_cols=90 Identities=16% Similarity=0.241 Sum_probs=45.0
Q ss_pred CCeEEeecCCCC-----------C---ChhhHHHHHHHHHHHHhhCCC-eEEE-EeCCCCCchhhhhHHHHHHhhCCeee
Q 021511 153 LDGIDIDYEHFQ-----------A---DPNTFAECIGRLIKTLKKNGA-ISFA-SIAPYDDDQVQSHYLALWKSYGDLID 216 (311)
Q Consensus 153 ~DGiDiD~E~~~-----------~---d~~~~~~~l~~Lr~~l~~~~~-~~~a-~~~p~~~~~~~~~y~~~~~~~~d~id 216 (311)
=.||++||-... . +-+.+..|+++=.++++.-.. +.++ -.+.......-......+.+..--+|
T Consensus 167 ~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lHla~g~~n~~y~~~fd~ltk~nvdfD 246 (403)
T COG3867 167 KEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALHLAEGENNSLYRWIFDELTKRNVDFD 246 (403)
T ss_pred HcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEEecCCCCCchhhHHHHHHHHcCCCce
Confidence 368899986541 1 223455556555555554332 2222 22222211111122344544444679
Q ss_pred EEEecccCCCCCCCHHHHHHHHHHhhc
Q 021511 217 YVNFQFYAYAQGTSVSQFMDYFKTQSS 243 (311)
Q Consensus 217 ~~~~~~y~~~~~~~~~~~~~~~~~~~~ 243 (311)
++..-+|-+|..+ ...........+.
T Consensus 247 Vig~SyYpyWhgt-l~nL~~nl~dia~ 272 (403)
T COG3867 247 VIGSSYYPYWHGT-LNNLTTNLNDIAS 272 (403)
T ss_pred EEeeeccccccCc-HHHHHhHHHHHHH
Confidence 9999999888753 3333333444433
No 93
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=43.29 E-value=2.6e+02 Score=25.58 Aligned_cols=27 Identities=26% Similarity=0.131 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeecCC
Q 021511 135 TWVSNAVASLTSIIKEYNLDGIDIDYEH 162 (311)
Q Consensus 135 ~~~~~~i~si~~~~~~~g~DGiDiD~E~ 162 (311)
+.++.|++.. ..+++-|||||+|.-=+
T Consensus 139 ~ii~~f~~aA-~~a~~aGfDgVeih~ah 165 (337)
T PRK13523 139 ETVLAFKQAA-VRAKEAGFDVIEIHGAH 165 (337)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEcccc
Confidence 5566777554 56677899999998653
No 94
>PRK09989 hypothetical protein; Provisional
Probab=42.82 E-value=78 Score=27.46 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=27.8
Q ss_pred HHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhCCCeEEE
Q 021511 144 LTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFA 190 (311)
Q Consensus 144 i~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~~~~~~a 190 (311)
.++.++++|||||+|-..+. - -.+++++.+.+.++-.+.
T Consensus 20 ~l~~~~~~Gfd~VEl~~~~~-~-------~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 20 RFAAARKAGFDAVEFLFPYD-Y-------STLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHcCCCEEEECCccc-C-------CHHHHHHHHHHcCCcEEE
Confidence 34788999999999954322 1 157888889888875554
No 95
>PRK14705 glycogen branching enzyme; Provisional
Probab=42.20 E-value=94 Score=33.82 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEeecC-CC-------------CC---Chhh--HHHHHHHHHHHHhhCC--CeEEE
Q 021511 133 VDTWVSNAVASLTSIIKEYNLDGIDIDYE-HF-------------QA---DPNT--FAECIGRLIKTLKKNG--AISFA 190 (311)
Q Consensus 133 ~~~~~~~~i~si~~~~~~~g~DGiDiD~E-~~-------------~~---d~~~--~~~~l~~Lr~~l~~~~--~~~~a 190 (311)
+.+-++-+++++.-|+++|++||+-+|-- .. ++ .++| =..|++++.+.+++.. .++++
T Consensus 878 ~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IA 956 (1224)
T PRK14705 878 RTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIA 956 (1224)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 45566667889999999999999999962 11 00 1122 3578999988887543 35544
No 96
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=40.93 E-value=24 Score=29.02 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=31.5
Q ss_pred HHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhCCCeEEE
Q 021511 146 SIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFA 190 (311)
Q Consensus 146 ~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~~~~~~a 190 (311)
+++++.|||||++........... ..-+.++++.+++.++-+..
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~-~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEK-DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHH-HHHHHHHHHHHHHTTCEEEE
T ss_pred hHHHHcCCCEEEEecCCCcccccc-hHHHHHHHHHHHHcCCeEEE
Confidence 678899999999987765321111 56688899999888875433
No 97
>PF06778 Chlor_dismutase: Chlorite dismutase; InterPro: IPR010644 This family contains chlorite dismutase enzymes of bacterial and archaeal origin. This enzyme catalyses the disproportionation of chlorite into chloride and oxygen [, ]. Note that many family members are hypothetical proteins.; PDB: 2VXH_B 3NN4_A 3NN2_A 3NN3_D 3NN1_E 3QPI_A 3Q08_Q 3Q09_B 1T0T_V 1VDH_E ....
Probab=39.98 E-value=13 Score=31.12 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=19.9
Q ss_pred eEEeecCCC----CCChhhHHHHHHHHHHH
Q 021511 155 GIDIDYEHF----QADPNTFAECIGRLIKT 180 (311)
Q Consensus 155 GiDiD~E~~----~~d~~~~~~~l~~Lr~~ 180 (311)
|+| |||+. ..|...|..++.+||..
T Consensus 150 GLd-D~Ew~v~le~dd~~~~~dlv~~lR~t 178 (193)
T PF06778_consen 150 GLD-DYEWVVTLEADDLHDFVDLVYELRFT 178 (193)
T ss_dssp TTC-SSSEEEEEEESCHHHHHHHHHHHHTS
T ss_pred cCC-CceEEEEEecCCHHHHHHHHHHHHhh
Confidence 444 89987 46778999999999964
No 98
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=39.91 E-value=1.6e+02 Score=25.45 Aligned_cols=74 Identities=22% Similarity=0.301 Sum_probs=43.4
Q ss_pred HHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC-------------C
Q 021511 99 QVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ-------------A 165 (311)
Q Consensus 99 ~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~-------------~ 165 (311)
.+..++. .+..+.+.|.|.+.. . ++ .+++.+.++ .|+|||+..-|. .
T Consensus 64 ~~~~~~~--~~~p~~vqi~g~~~~------------~----~~-~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~ 123 (233)
T cd02911 64 EIKALKD--SNVLVGVNVRSSSLE------------P----LL-NAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLK 123 (233)
T ss_pred HHHHhhc--cCCeEEEEecCCCHH------------H----HH-HHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcC
Confidence 3344444 467888999875422 1 22 333566665 599999999873 2
Q ss_pred ChhhHHHHHHHHHHHHhhCCCeEEEEeCCCC
Q 021511 166 DPNTFAECIGRLIKTLKKNGAISFASIAPYD 196 (311)
Q Consensus 166 d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~ 196 (311)
|.+....+++++|+ ...-+++-+.+..
T Consensus 124 ~p~~l~eiv~avr~----~~~pVsvKir~g~ 150 (233)
T cd02911 124 DPERLSEFIKALKE----TGVPVSVKIRAGV 150 (233)
T ss_pred CHHHHHHHHHHHHh----cCCCEEEEEcCCc
Confidence 34455666666664 2455555555543
No 99
>PF15284 PAGK: Phage-encoded virulence factor
Probab=39.37 E-value=20 Score=23.83 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHhccC
Q 021511 3 MNQIVSKLFISLVILQAVLFPC 24 (311)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~ 24 (311)
|+++=++++.++++|++..++.
T Consensus 1 Mkk~ksifL~l~~~LsA~~FSa 22 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFSA 22 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhhH
Confidence 5666666777777777777766
No 100
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=37.43 E-value=65 Score=28.32 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=26.0
Q ss_pred HHHHHcCCCeEEeecCCCCCChhhHHHHHHHHH
Q 021511 146 SIIKEYNLDGIDIDYEHFQADPNTFAECIGRLI 178 (311)
Q Consensus 146 ~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr 178 (311)
+++..-|||.|=||.|+.+-|.+....+++..+
T Consensus 34 e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~ 66 (256)
T PRK10558 34 EVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALK 66 (256)
T ss_pred HHHHhcCCCEEEEccccCCCCHHHHHHHHHHHh
Confidence 788888999999999998777666666555543
No 101
>PRK11372 lysozyme inhibitor; Provisional
Probab=37.25 E-value=63 Score=24.36 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=11.8
Q ss_pred ChhhhHHHHHHHHHHHHHHHhccC
Q 021511 1 MAMNQIVSKLFISLVILQAVLFPC 24 (311)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~~ 24 (311)
|.|.+++ +++++++++.|...
T Consensus 1 ~~mk~ll---~~~~~~lL~gCs~~ 21 (109)
T PRK11372 1 MSMKKLL---IICLPVLLTGCSAY 21 (109)
T ss_pred CchHHHH---HHHHHHHHHHhcCC
Confidence 7888755 33344445555554
No 102
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=37.08 E-value=84 Score=27.43 Aligned_cols=47 Identities=17% Similarity=0.016 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCCeEEeecCCCCCChhhH-HHHHHHHHHHHhhCCCeEE
Q 021511 143 SLTSIIKEYNLDGIDIDYEHFQADPNTF-AECIGRLIKTLKKNGAISF 189 (311)
Q Consensus 143 si~~~~~~~g~DGiDiD~E~~~~d~~~~-~~~l~~Lr~~l~~~~~~~~ 189 (311)
..++.+++.|||||++....+......+ ..-+++|++.+.+.++-++
T Consensus 17 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 17 HAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred HHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEE
Confidence 3448999999999999433221100111 1357888888888776443
No 103
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=36.75 E-value=1.2e+02 Score=28.13 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEeecCC---------CC----CC-----hhhHHHHHHHHHHHHhhC
Q 021511 134 DTWVSNAVASLTSIIKEYNLDGIDIDYEH---------FQ----AD-----PNTFAECIGRLIKTLKKN 184 (311)
Q Consensus 134 ~~~~~~~i~si~~~~~~~g~DGiDiD~E~---------~~----~d-----~~~~~~~l~~Lr~~l~~~ 184 (311)
++.++.|++.. ..+++-|||||+|.-=+ |. .| -+|=.+|+.|+.+++++.
T Consensus 140 ~~ii~~f~~AA-~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~ 207 (361)
T cd04747 140 DDVIAAFARAA-ADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAA 207 (361)
T ss_pred HHHHHHHHHHH-HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34566677544 55677899999998665 31 11 244456666666666553
No 104
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=36.50 E-value=70 Score=28.33 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=26.1
Q ss_pred HHHHHcCCCeEEeecCCCCCChhhHHHHHHHHH
Q 021511 146 SIIKEYNLDGIDIDYEHFQADPNTFAECIGRLI 178 (311)
Q Consensus 146 ~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr 178 (311)
+++..-|||.|-||.|+..-+.+....+++..+
T Consensus 33 E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~ 65 (267)
T PRK10128 33 EIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIA 65 (267)
T ss_pred HHHHHcCCCEEEEccccCCCCHHHHHHHHHHHH
Confidence 677888999999999998777666666666554
No 105
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=36.07 E-value=1.2e+02 Score=27.82 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeecCC
Q 021511 135 TWVSNAVASLTSIIKEYNLDGIDIDYEH 162 (311)
Q Consensus 135 ~~~~~~i~si~~~~~~~g~DGiDiD~E~ 162 (311)
+.++.|++.. +.+++.|||||+|.-=+
T Consensus 146 ~~i~~~~~aA-~ra~~aGfDgVeih~a~ 172 (338)
T cd04733 146 DVIDRFAHAA-RLAQEAGFDGVQIHAAH 172 (338)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEchhh
Confidence 3456677555 56778999999998654
No 106
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=35.96 E-value=1.1e+02 Score=26.57 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHHH
Q 021511 139 NAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLI 178 (311)
Q Consensus 139 ~~i~si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr 178 (311)
..++.-.+.++++|||.|+|.==...-..+...++++..+
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~ 110 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAK 110 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHH
Confidence 3444555899999999999953322212334444454444
No 107
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=34.96 E-value=1.3e+02 Score=27.68 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeecCC
Q 021511 135 TWVSNAVASLTSIIKEYNLDGIDIDYEH 162 (311)
Q Consensus 135 ~~~~~~i~si~~~~~~~g~DGiDiD~E~ 162 (311)
+.++.|++.. ..+++-|||||+|.--+
T Consensus 149 ~ii~~f~~aA-~~a~~aGfDgVeih~ah 175 (338)
T cd02933 149 GIVADFRQAA-RNAIEAGFDGVEIHGAN 175 (338)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEcccc
Confidence 4456666544 56667899999998766
No 108
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=34.95 E-value=2.1e+02 Score=24.57 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=40.7
Q ss_pred hCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC--------CC-------hhhH
Q 021511 106 RHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ--------AD-------PNTF 170 (311)
Q Consensus 106 ~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~--------~d-------~~~~ 170 (311)
+.++..+++-|-|++.+. . + -+....++....+++|.-|=+-||+ .| ...|
T Consensus 14 ~~~~~~vlvfVHGyn~~f----~------~----a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l 79 (233)
T PF05990_consen 14 KSPDKEVLVFVHGYNNSF----E------D----ALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFYDRESARFSGPAL 79 (233)
T ss_pred hCCCCeEEEEEeCCCCCH----H------H----HHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhhhhhhHHHHHHHH
Confidence 346899999999998651 1 1 1223336778889999888888883 12 2346
Q ss_pred HHHHHHHHHH
Q 021511 171 AECIGRLIKT 180 (311)
Q Consensus 171 ~~~l~~Lr~~ 180 (311)
.+||++|++.
T Consensus 80 ~~~L~~L~~~ 89 (233)
T PF05990_consen 80 ARFLRDLARA 89 (233)
T ss_pred HHHHHHHHhc
Confidence 6677777665
No 109
>PLN03231 putative alpha-galactosidase; Provisional
Probab=34.85 E-value=1.5e+02 Score=27.54 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhCCCeEEEEeCCC
Q 021511 137 VSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPY 195 (311)
Q Consensus 137 ~~~~i~si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~ 195 (311)
+|.+.+++++...++|+|=|-+|+-++..+. ...-+..++++|.+.+.-...++||+
T Consensus 161 aq~y~~~~a~~fA~WGVDylK~D~c~~~~~~--~~~~y~~m~~AL~~tGRpIv~Slc~g 217 (357)
T PLN03231 161 GKLFIQSLYDQYASWGIDFIKHDCVFGAENP--QLDEILTVSKAIRNSGRPMIYSLSPG 217 (357)
T ss_pred HHHHHHHHHHHHHHhCCCEEeecccCCCCcc--cHHHHHHHHHHHHHhCCCeEEEecCC
Confidence 4568889999999999999999987653221 11224578888887776555556664
No 110
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=34.77 E-value=1.1e+02 Score=27.93 Aligned_cols=26 Identities=27% Similarity=0.169 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEeec
Q 021511 134 DTWVSNAVASLTSIIKEYNLDGIDIDY 160 (311)
Q Consensus 134 ~~~~~~~i~si~~~~~~~g~DGiDiD~ 160 (311)
+..++.|++.. +.+++-|||||+|.-
T Consensus 150 ~~ii~~~~~aA-~~a~~aGfDgVei~~ 175 (336)
T cd02932 150 AEVVDAFVAAA-RRAVEAGFDVIEIHA 175 (336)
T ss_pred HHHHHHHHHHH-HHHHHcCCCEEEEcc
Confidence 34556677655 444567999999985
No 111
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=34.61 E-value=4.2e+02 Score=27.30 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeecC
Q 021511 135 TWVSNAVASLTSIIKEYNLDGIDIDYE 161 (311)
Q Consensus 135 ~~~~~~i~si~~~~~~~g~DGiDiD~E 161 (311)
+.++.|+++. ..+++-|||||+|.-=
T Consensus 548 ~~i~~f~~aA-~~a~~aGfDgveih~a 573 (765)
T PRK08255 548 RVRDDFVAAA-RRAAEAGFDWLELHCA 573 (765)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEecc
Confidence 4566677655 4456689999999866
No 112
>PLN03244 alpha-amylase; Provisional
Probab=33.46 E-value=1.6e+02 Score=30.49 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEee
Q 021511 134 DTWVSNAVASLTSIIKEYNLDGIDID 159 (311)
Q Consensus 134 ~~~~~~~i~si~~~~~~~g~DGiDiD 159 (311)
.+-++-+++++.-|+++|++||+-+|
T Consensus 506 ~EVr~FLLsna~yWleEyhIDGFRfD 531 (872)
T PLN03244 506 LDVLHFLISNLNWWITEYQIDGFQFH 531 (872)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceee
Confidence 34556678889999999999999998
No 113
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=33.15 E-value=1.2e+02 Score=28.62 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEeecCCC
Q 021511 133 VDTWVSNAVASLTSIIKEYNLDGIDIDYEHF 163 (311)
Q Consensus 133 ~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~ 163 (311)
+.+-++-+.+.+.++++++|+|.|-+|+...
T Consensus 164 ~pev~~~l~~~i~~ll~~~gidYiK~D~n~~ 194 (394)
T PF02065_consen 164 NPEVRDYLFEVIDRLLREWGIDYIKWDFNRD 194 (394)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEeccccC
Confidence 4555666777888999999999999999764
No 114
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=32.83 E-value=87 Score=27.37 Aligned_cols=33 Identities=24% Similarity=0.189 Sum_probs=25.6
Q ss_pred HHHHHcCCCeEEeecCCCCCChhhHHHHHHHHH
Q 021511 146 SIIKEYNLDGIDIDYEHFQADPNTFAECIGRLI 178 (311)
Q Consensus 146 ~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr 178 (311)
+++..-|||.|=||.|+..-+.+....+++..+
T Consensus 27 e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~ 59 (249)
T TIGR03239 27 EVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALK 59 (249)
T ss_pred HHHHhcCCCEEEEecccCCCCHHHHHHHHHHHh
Confidence 777888999999999998766666666555543
No 115
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.34 E-value=3.5e+02 Score=23.76 Aligned_cols=101 Identities=19% Similarity=0.076 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhhHHHHH-HhhCCeeeE
Q 021511 139 NAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALW-KSYGDLIDY 217 (311)
Q Consensus 139 ~~i~si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~y~~~~-~~~~d~id~ 217 (311)
+|+ +.+++-|+||+=| | |-. + .-.+++++.+++.++-.+.-++|.... .-.+.+ +...++|.+
T Consensus 108 ~f~----~~~~~aGvdGvii----p--DLp-~-ee~~~~~~~~~~~gl~~I~lvap~t~~----eri~~i~~~s~gfIY~ 171 (258)
T PRK13111 108 RFA----ADAAEAGVDGLII----P--DLP-P-EEAEELRAAAKKHGLDLIFLVAPTTTD----ERLKKIASHASGFVYY 171 (258)
T ss_pred HHH----HHHHHcCCcEEEE----C--CCC-H-HHHHHHHHHHHHcCCcEEEEeCCCCCH----HHHHHHHHhCCCcEEE
Confidence 566 7888899999998 2 110 1 345566667777776665555664421 112333 344567777
Q ss_pred EEecccCCCCCCCHHHHHHHHHHhhcCCCCCcEEEceec
Q 021511 218 VNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFIS 256 (311)
Q Consensus 218 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~p~~KivlG~p~ 256 (311)
+...-.. +..+..+.....+.+..+....-.+++|+..
T Consensus 172 vs~~GvT-G~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI 209 (258)
T PRK13111 172 VSRAGVT-GARSADAADLAELVARLKAHTDLPVAVGFGI 209 (258)
T ss_pred EeCCCCC-CcccCCCccHHHHHHHHHhcCCCcEEEEccc
Confidence 6665442 1111111112222222333445677777744
No 116
>PLN02877 alpha-amylase/limit dextrinase
Probab=32.24 E-value=1.2e+02 Score=32.02 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEeecCCC
Q 021511 134 DTWVSNAVASLTSIIKEYNLDGIDIDYEHF 163 (311)
Q Consensus 134 ~~~~~~~i~si~~~~~~~g~DGiDiD~E~~ 163 (311)
...|+-+++++.-|+++|++||+-||.-..
T Consensus 534 ~mvrklIlDsl~yW~~ey~VDGFRFDlmg~ 563 (970)
T PLN02877 534 YMVDRLIVDDLLNWAVNYKVDGFRFDLMGH 563 (970)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEcccc
Confidence 334556789999999999999999998764
No 117
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=31.30 E-value=2e+02 Score=27.86 Aligned_cols=154 Identities=10% Similarity=0.001 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHcCCCeEEeec-----CCCCC---C-hhhHHHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhhHHHHH
Q 021511 138 SNAVASLTSIIKEYNLDGIDIDY-----EHFQA---D-PNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALW 208 (311)
Q Consensus 138 ~~~i~si~~~~~~~g~DGiDiD~-----E~~~~---d-~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~y~~~~ 208 (311)
..++..++.+.-+.|.||+-+|= +.++. . ....-.+++++|+.+.+.+.+++.=+.. .|...
T Consensus 168 ~e~i~~il~fwl~~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~E~~~--------~~~~~- 238 (470)
T TIGR03852 168 KRFIRDNLENLAEHGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEILPEIHE--------HYTIQ- 238 (470)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEEeHhhh--------hcccc-
Confidence 35676777888889999999993 33321 1 1456789999999887666555542210 11100
Q ss_pred HhhCCeeeEEEecccCCC------CCCCHHHHHHHHHHhhcCCCCCcEE-Ec----eecCCCCCCCChhhHHHHHHHHhc
Q 021511 209 KSYGDLIDYVNFQFYAYA------QGTSVSQFMDYFKTQSSNYKGGKVL-VS----FISDGSGGLAPGDGFFTACSRLKS 277 (311)
Q Consensus 209 ~~~~d~id~~~~~~y~~~------~~~~~~~~~~~~~~~~~~~p~~Kiv-lG----~p~~~~~g~~~~~~~~~~~~~~~~ 277 (311)
...+|.. .|.|+|.-+. ...++.. +.++.+..|+.++. |. +..-+-.|..+.+.....+..+.+
T Consensus 239 ~~~gde~-~mvY~F~lppl~l~al~~~~~~~----l~~wl~~~p~~~~nfL~sHDgigl~~~~glL~~~ei~~l~~~~~~ 313 (470)
T TIGR03852 239 FKIAEHG-YYVYDFALPMLVLYSLYSGKTNR----LADWLRKSPMKQFTTLDTHDGIGVVDVKDLLTDEEIDYTSEELYK 313 (470)
T ss_pred cccccce-eEEccCccchhhHHHhhccCHHH----HHHHHHhCcccceEEeecCCCCCCccccccCCHHHHHHHHHHHHh
Confidence 1123322 3446665321 1122222 33333345665431 10 100011244555655656666654
Q ss_pred CCCCCeEEEEee--eCC-CCCCceechhHHHHHh
Q 021511 278 QKQLHGIFVWSA--DDS-KKNGFRYEKQSQALLA 308 (311)
Q Consensus 278 ~~~~~Gvm~W~~--~~d-~~~~~~~~~~~~~~l~ 308 (311)
. ||-|-|.. ..+ ....|....+.-++|.
T Consensus 314 ~---g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~ 344 (470)
T TIGR03852 314 V---GANVKKIYSTAAYNNLDIYQINCTYYSALG 344 (470)
T ss_pred c---CCCccccccccccCCcCceeeehhhHHHhC
Confidence 3 56666622 222 2235677777777775
No 118
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=31.23 E-value=4.1e+02 Score=24.28 Aligned_cols=86 Identities=10% Similarity=0.146 Sum_probs=50.5
Q ss_pred HHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC-------CChhhHHH
Q 021511 100 VSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ-------ADPNTFAE 172 (311)
Q Consensus 100 i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~-------~d~~~~~~ 172 (311)
+..++++..++.+.+|||+..... ...+-+ .|+..+.. +.++ .|.+.|+.-.|. .+.+.+.+
T Consensus 125 l~~i~~~~~~~~i~vsi~~~~~~~-----~~~~~~----dy~~~~~~-~~~~-ad~iElNlScPn~~~~~~~~~~~~~~~ 193 (335)
T TIGR01036 125 VERLKRARYKGPIGINIGKNKDTP-----SEDAKE----DYAACLRK-LGPL-ADYLVVNVSSPNTPGLRDLQYKAELRD 193 (335)
T ss_pred HHHHhhccCCCcEEEEEeCCCCCC-----cccCHH----HHHHHHHH-Hhhh-CCEEEEEccCCCCCCcccccCHHHHHH
Confidence 344554445788999998764221 112233 34433323 3332 899999997772 34567778
Q ss_pred HHHHHHHHHhh----CCCeEEEEeCCCC
Q 021511 173 CIGRLIKTLKK----NGAISFASIAPYD 196 (311)
Q Consensus 173 ~l~~Lr~~l~~----~~~~~~a~~~p~~ 196 (311)
+++.+|+..+. ...-+.+-++|..
T Consensus 194 i~~~V~~~~~~~~~~~~~Pv~vKLsP~~ 221 (335)
T TIGR01036 194 LLTAVKQEQDGLRRVHRVPVLVKIAPDL 221 (335)
T ss_pred HHHHHHHHHHhhhhccCCceEEEeCCCC
Confidence 88888877652 1244566667754
No 119
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=31.05 E-value=2.3e+02 Score=25.24 Aligned_cols=66 Identities=17% Similarity=0.284 Sum_probs=39.5
Q ss_pred CcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHc--CCCeEEeecCCCC---------CChhhHHHHHHHH
Q 021511 109 NVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEY--NLDGIDIDYEHFQ---------ADPNTFAECIGRL 177 (311)
Q Consensus 109 g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~--g~DGiDiD~E~~~---------~d~~~~~~~l~~L 177 (311)
+..++++|.|.+. ++ ++ .+++.+++. ++|+|||++-.|. .+.+...++++++
T Consensus 90 ~~pl~~qi~g~~~------------~~----~~-~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~v 152 (300)
T TIGR01037 90 PTPLIASVYGSSV------------EE----FA-EVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAV 152 (300)
T ss_pred CCcEEEEeecCCH------------HH----HH-HHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHH
Confidence 5679999986431 22 22 233555554 4999999988773 2334555666666
Q ss_pred HHHHhhCCCeEEEEeCC
Q 021511 178 IKTLKKNGAISFASIAP 194 (311)
Q Consensus 178 r~~l~~~~~~~~a~~~p 194 (311)
|+.. ...+++-+.|
T Consensus 153 r~~~---~~pv~vKi~~ 166 (300)
T TIGR01037 153 KDKT---DVPVFAKLSP 166 (300)
T ss_pred HHhc---CCCEEEECCC
Confidence 6554 3445555555
No 120
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=30.95 E-value=1.7e+02 Score=27.54 Aligned_cols=79 Identities=11% Similarity=0.193 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCC--CCChhhHH
Q 021511 94 NLSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHF--QADPNTFA 171 (311)
Q Consensus 94 ~~~~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~--~~d~~~~~ 171 (311)
....+.++.+|+ .|+. -+|||=.+.+... .....|..-.+... ..++.+++.||+-|.+|+-+. .++.+.+.
T Consensus 112 ~lt~e~l~~l~~--~Gvn-rislGvQS~~d~~--L~~l~R~~~~~~~~-~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~ 185 (400)
T PRK07379 112 TFDLEQLQGYRS--LGVN-RVSLGVQAFQDEL--LALCGRSHRVKDIF-AAVDLIHQAGIENFSLDLISGLPHQTLEDWQ 185 (400)
T ss_pred cCCHHHHHHHHH--CCCC-EEEEEcccCCHHH--HHHhCCCCCHHHHH-HHHHHHHHcCCCeEEEEeecCCCCCCHHHHH
Confidence 345778888887 5664 6788877766531 11112221122233 445788999999888887664 44555555
Q ss_pred HHHHHHH
Q 021511 172 ECIGRLI 178 (311)
Q Consensus 172 ~~l~~Lr 178 (311)
.-++.+.
T Consensus 186 ~tl~~~~ 192 (400)
T PRK07379 186 ASLEAAI 192 (400)
T ss_pred HHHHHHH
Confidence 5444443
No 121
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=30.50 E-value=1.5e+02 Score=27.59 Aligned_cols=27 Identities=11% Similarity=-0.033 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeecCC
Q 021511 135 TWVSNAVASLTSIIKEYNLDGIDIDYEH 162 (311)
Q Consensus 135 ~~~~~~i~si~~~~~~~g~DGiDiD~E~ 162 (311)
+.++.|++.. ..+++-|||||+|.--+
T Consensus 147 ~ii~~f~~AA-~ra~~aGfDgVEih~ah 173 (370)
T cd02929 147 RVRRWYVDAA-LRARDAGFDIVYVYAAH 173 (370)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEcccc
Confidence 4566677554 55667899999998765
No 122
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=30.23 E-value=1.7e+02 Score=26.45 Aligned_cols=55 Identities=11% Similarity=0.205 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEeecCCC-CCChhhHHHHHHHHHHHHhhCCCeEEE
Q 021511 133 VDTWVSNAVASLTSIIKEYNLDGIDIDYEHF-QADPNTFAECIGRLIKTLKKNGAISFA 190 (311)
Q Consensus 133 ~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~-~~d~~~~~~~l~~Lr~~l~~~~~~~~a 190 (311)
..++++.+.+...+.++..|+ .+||+.. ....+.+.++++++-..|.++|++...
T Consensus 64 ~~e~~~~~~~~~~~~~~~lgi---~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~ 119 (314)
T cd00812 64 PEDWTEYNIKKMKEQLKRMGF---SYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKK 119 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---ceecccccccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 456777888888888888775 5677644 234578899999999999888876544
No 123
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=29.85 E-value=2.2e+02 Score=26.20 Aligned_cols=78 Identities=15% Similarity=0.134 Sum_probs=44.1
Q ss_pred CCHHHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCC--CCCChhhHHH
Q 021511 95 LSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEH--FQADPNTFAE 172 (311)
Q Consensus 95 ~~~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~--~~~d~~~~~~ 172 (311)
...+.++.+|+ .|+. .+|||=.+.+... .....|..-.+... ..++.+++.||+-|.+|+-+ |.++.+.+..
T Consensus 98 lt~e~l~~l~~--~Gv~-risiGvqS~~~~~--l~~lgR~~~~~~~~-~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~ 171 (360)
T TIGR00539 98 ITAEWCKGLKG--AGIN-RLSLGVQSFRDDK--LLFLGRQHSAKNIA-PAIETALKSGIENISLDLMYGLPLQTLNSLKE 171 (360)
T ss_pred CCHHHHHHHHH--cCCC-EEEEecccCChHH--HHHhCCCCCHHHHH-HHHHHHHHcCCCeEEEeccCCCCCCCHHHHHH
Confidence 34678888887 4653 5666655544321 11112211122333 34578889999988777765 4455566655
Q ss_pred HHHHHH
Q 021511 173 CIGRLI 178 (311)
Q Consensus 173 ~l~~Lr 178 (311)
.++.+.
T Consensus 172 ~l~~~~ 177 (360)
T TIGR00539 172 ELKLAK 177 (360)
T ss_pred HHHHHH
Confidence 555544
No 124
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=29.72 E-value=40 Score=29.40 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=35.7
Q ss_pred HHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHH
Q 021511 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRL 177 (311)
Q Consensus 98 ~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~L 177 (311)
+.+..+|++ | |.++.||+-.. .+-.. +-++.-.+.+++.|||.|+|.==...-..+...++
T Consensus 58 eki~l~~~~--g--V~v~~GGtl~E-------~a~~q----~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~---- 118 (244)
T PF02679_consen 58 EKIDLAHSH--G--VYVYPGGTLFE-------VAYQQ----GKFDEYLEECKELGFDAIEISDGTIDLPEEERLRL---- 118 (244)
T ss_dssp HHHHHHHCT--T---EEEE-HHHHH-------HHHHT----T-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHH----
T ss_pred HHHHHHHHc--C--CeEeCCcHHHH-------HHHhc----ChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHH----
Confidence 444445553 3 56688987322 11111 22334448999999999999533222122333333
Q ss_pred HHHHhhCCCeEEEEeCC
Q 021511 178 IKTLKKNGAISFASIAP 194 (311)
Q Consensus 178 r~~l~~~~~~~~a~~~p 194 (311)
.+.+++.++....=+..
T Consensus 119 I~~~~~~Gf~v~~EvG~ 135 (244)
T PF02679_consen 119 IRKAKEEGFKVLSEVGK 135 (244)
T ss_dssp HHHHCCTTSEEEEEES-
T ss_pred HHHHHHCCCEEeecccC
Confidence 33444555555443433
No 125
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=29.08 E-value=3.1e+02 Score=25.73 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=40.3
Q ss_pred HHHHHHHHhhCCCcEEEEEECCCCCCCC-ce-----ecCCCc---hhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC
Q 021511 97 PSQVSAIKNRHSNVKVALSLGGDSVSSG-KV-----YFNPSS---VDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ 164 (311)
Q Consensus 97 ~~~i~~lk~~~~g~kvllsiGG~~~~~~-~~-----~~~~~~---~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~ 164 (311)
.+...++|+ .|+|+-+-...+..... +. ..++.. -.++.+.+..++.+++.+||=|.+=+|+.++.
T Consensus 131 ~el~~A~rk--~Glk~G~Y~S~~DW~~p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~ 205 (384)
T smart00812 131 GELADAVRK--RGLKFGLYHSLFDWFNPLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEA 205 (384)
T ss_pred HHHHHHHHH--cCCeEEEEcCHHHhCCCccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 344456676 69999887765433211 10 001111 23333334789999999999999988987753
No 126
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.02 E-value=89 Score=30.62 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=35.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHcCCCe-EEeecCCCCCChhhHHHHHHHHHHHHhh
Q 021511 129 NPSSVDTWVSNAVASLTSIIKEYNLDG-IDIDYEHFQADPNTFAECIGRLIKTLKK 183 (311)
Q Consensus 129 ~~~~~~~~~~~~i~si~~~~~~~g~DG-iDiD~E~~~~d~~~~~~~l~~Lr~~l~~ 183 (311)
-|.+...|++..+..|.+||.++|||+ |-+-.-.-++. ..|....+-|...|.+
T Consensus 64 Rpl~dk~~~s~c~~~I~~fL~engf~~~iS~k~l~~PS~-KdF~~iFkfLY~~Ldp 118 (581)
T KOG0995|consen 64 RPLSDKRYRSQCIRQIYNFLVENGFSHPISIKLLMKPSV-KDFIAIFKFLYGFLDP 118 (581)
T ss_pred CCcccHHHHHHHHHHHHHHHHHcCCCCChhhhhcCCCcc-ccHHHHHHHHHhccCC
Confidence 356778899999999999999999993 11211111222 2666666666655544
No 127
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=28.70 E-value=2.4e+02 Score=26.05 Aligned_cols=79 Identities=10% Similarity=0.192 Sum_probs=45.8
Q ss_pred CCHHHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCC--CCCChhhHHH
Q 021511 95 LSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEH--FQADPNTFAE 172 (311)
Q Consensus 95 ~~~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~--~~~d~~~~~~ 172 (311)
...+.++.+++ .|+. -+|||=.+.+... .....|..-.+... ..++.+++.|++-|.+|+-+ |.++.+.+..
T Consensus 97 ~t~e~l~~l~~--~G~~-rvsiGvqS~~d~~--L~~l~R~~~~~~~~-~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~ 170 (374)
T PRK05799 97 FTEEKLKILKS--MGVN-RLSIGLQAWQNSL--LKYLGRIHTFEEFL-ENYKLARKLGFNNINVDLMFGLPNQTLEDWKE 170 (374)
T ss_pred CCHHHHHHHHH--cCCC-EEEEECccCCHHH--HHHcCCCCCHHHHH-HHHHHHHHcCCCcEEEEeecCCCCCCHHHHHH
Confidence 44678888887 5654 4677766555421 11112211122333 44478899999866666554 5566667766
Q ss_pred HHHHHHH
Q 021511 173 CIGRLIK 179 (311)
Q Consensus 173 ~l~~Lr~ 179 (311)
.++.+.+
T Consensus 171 ~l~~~~~ 177 (374)
T PRK05799 171 TLEKVVE 177 (374)
T ss_pred HHHHHHh
Confidence 6666543
No 128
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=28.41 E-value=1.9e+02 Score=26.66 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEeecC
Q 021511 134 DTWVSNAVASLTSIIKEYNLDGIDIDYE 161 (311)
Q Consensus 134 ~~~~~~~i~si~~~~~~~g~DGiDiD~E 161 (311)
++.++.|+++. ..+++-|||||+|.-=
T Consensus 140 ~~ii~~f~~aA-~~a~~aGfDgVeih~a 166 (353)
T cd04735 140 EDIIDAFGEAT-RRAIEAGFDGVEIHGA 166 (353)
T ss_pred HHHHHHHHHHH-HHHHHcCCCEEEEccc
Confidence 45567777665 4456789999999853
No 129
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=28.39 E-value=2.2e+02 Score=26.09 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeecCCC
Q 021511 135 TWVSNAVASLTSIIKEYNLDGIDIDYEHF 163 (311)
Q Consensus 135 ~~~~~~i~si~~~~~~~g~DGiDiD~E~~ 163 (311)
+.++.|++.. ...++-|||||+|.--+.
T Consensus 146 ~ii~~f~~AA-~~A~~AGfDGVEIH~ahG 173 (341)
T PF00724_consen 146 EIIEDFAQAA-RRAKEAGFDGVEIHAAHG 173 (341)
T ss_dssp HHHHHHHHHH-HHHHHTT-SEEEEEESTT
T ss_pred HHHHHHHHHH-HHHHHhccCeEeecccch
Confidence 4455666444 556678999999987653
No 130
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=28.36 E-value=1.9e+02 Score=26.75 Aligned_cols=78 Identities=10% Similarity=0.145 Sum_probs=46.1
Q ss_pred CCHHHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCC--CCCChhhHHH
Q 021511 95 LSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEH--FQADPNTFAE 172 (311)
Q Consensus 95 ~~~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~--~~~d~~~~~~ 172 (311)
...+.+..+++ .|++ -+|+|=.+.+... .....|..-.+. +...++.+++.|++-|.+|+-+ |.++.+.+..
T Consensus 106 i~~e~l~~l~~--~G~~-rvslGvQS~~~~~--L~~l~R~~s~~~-~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~ 179 (375)
T PRK05628 106 TSPEFFAALRA--AGFT-RVSLGMQSAAPHV--LAVLDRTHTPGR-AVAAAREARAAGFEHVNLDLIYGTPGESDDDWRA 179 (375)
T ss_pred CCHHHHHHHHH--cCCC-EEEEecccCCHHH--HHHcCCCCCHHH-HHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHH
Confidence 45678888887 5664 6777776655431 111122111222 2345578899999988888766 5555566655
Q ss_pred HHHHHH
Q 021511 173 CIGRLI 178 (311)
Q Consensus 173 ~l~~Lr 178 (311)
-++.+.
T Consensus 180 tl~~~~ 185 (375)
T PRK05628 180 SLDAAL 185 (375)
T ss_pred HHHHHH
Confidence 555443
No 131
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=28.12 E-value=4.2e+02 Score=23.35 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhhHHHHHHhhCC-eeeE
Q 021511 139 NAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGD-LIDY 217 (311)
Q Consensus 139 ~~i~si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~y~~~~~~~~d-~id~ 217 (311)
+|+ +-+++-|+||+=|--+.+ ++ ..++++.+++.++-.+..++|..+. .-.+.+.+.++ +|-+
T Consensus 110 ~F~----~~~~~aGvdgviipDLP~-ee-------~~~~~~~~~~~gi~~I~lv~PtT~~----eri~~i~~~a~gFIY~ 173 (263)
T CHL00200 110 KFI----KKISQAGVKGLIIPDLPY-EE-------SDYLISVCNLYNIELILLIAPTSSK----SRIQKIARAAPGCIYL 173 (263)
T ss_pred HHH----HHHHHcCCeEEEecCCCH-HH-------HHHHHHHHHHcCCCEEEEECCCCCH----HHHHHHHHhCCCcEEE
Confidence 566 777889999999966644 22 4566666777787666666775431 12344455555 7777
Q ss_pred EEecccCCCCCCCHHHHHHHHHHhhcCCCCCcEEEceecC
Q 021511 218 VNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFISD 257 (311)
Q Consensus 218 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~p~~KivlG~p~~ 257 (311)
|+..-.. +........+..+.+..+....-.|.+|+...
T Consensus 174 vS~~GvT-G~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~ 212 (263)
T CHL00200 174 VSTTGVT-GLKTELDKKLKKLIETIKKMTNKPIILGFGIS 212 (263)
T ss_pred EcCCCCC-CCCccccHHHHHHHHHHHHhcCCCEEEECCcC
Confidence 7743221 11112222222233323333455678887554
No 132
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=27.78 E-value=2e+02 Score=26.46 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEeec
Q 021511 134 DTWVSNAVASLTSIIKEYNLDGIDIDY 160 (311)
Q Consensus 134 ~~~~~~~i~si~~~~~~~g~DGiDiD~ 160 (311)
++.++.|++.. ..+++-|||||+|.-
T Consensus 133 ~~i~~~f~~aA-~~a~~aGfDgVeih~ 158 (353)
T cd02930 133 EQTIEDFARCA-ALAREAGYDGVEIMG 158 (353)
T ss_pred HHHHHHHHHHH-HHHHHcCCCEEEEec
Confidence 34566777655 445667999999966
No 133
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=27.73 E-value=1e+02 Score=27.72 Aligned_cols=10 Identities=0% Similarity=0.079 Sum_probs=6.3
Q ss_pred EEeecCCCCC
Q 021511 156 IDIDYEHFQA 165 (311)
Q Consensus 156 iDiD~E~~~~ 165 (311)
.-+-|.||.+
T Consensus 132 y~VrF~YP~~ 141 (292)
T PRK13861 132 YSVQFTYPAD 141 (292)
T ss_pred EEEEEECCch
Confidence 3467788853
No 134
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=27.40 E-value=85 Score=25.60 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=25.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCC
Q 021511 130 PSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHF 163 (311)
Q Consensus 130 ~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~ 163 (311)
+...++-.++++.+-+..+-+-|+.|++|.+|.|
T Consensus 143 ~~k~~eik~kiIkNsinvlmtRGIrGlyiyaeDp 176 (191)
T COG3410 143 PEKNQEIKEKIIKNSINVLMTRGIRGLYIYAEDP 176 (191)
T ss_pred hhhCHHHHHHHHHHHHHHHHhcccceEEEEEeCH
Confidence 3344555667777777788888999999999977
No 135
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=27.28 E-value=3.4e+02 Score=24.97 Aligned_cols=62 Identities=8% Similarity=0.023 Sum_probs=44.5
Q ss_pred cEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC------------CChhhHHHHHHHH
Q 021511 110 VKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ------------ADPNTFAECIGRL 177 (311)
Q Consensus 110 ~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~------------~d~~~~~~~l~~L 177 (311)
.-.++.+-|-+++. ++ .++..+..-+.+-|++||-+||..-. .+.+.+..++..+
T Consensus 75 ~P~vVl~HGL~G~s---------~s----~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l 141 (345)
T COG0429 75 KPLVVLFHGLEGSS---------NS----PYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWL 141 (345)
T ss_pred CceEEEEeccCCCC---------cC----HHHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHH
Confidence 34566666666552 22 36778889999999999999998742 2457788888888
Q ss_pred HHHHhhC
Q 021511 178 IKTLKKN 184 (311)
Q Consensus 178 r~~l~~~ 184 (311)
++++.+.
T Consensus 142 ~~~~~~r 148 (345)
T COG0429 142 KARFPPR 148 (345)
T ss_pred HHhCCCC
Confidence 8866543
No 136
>PRK03705 glycogen debranching enzyme; Provisional
Probab=27.02 E-value=79 Score=31.98 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEeecCC
Q 021511 133 VDTWVSNAVASLTSIIKEYNLDGIDIDYEH 162 (311)
Q Consensus 133 ~~~~~~~~i~si~~~~~~~g~DGiDiD~E~ 162 (311)
+...++-+++++.-++++||+||+-||.-.
T Consensus 310 ~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~ 339 (658)
T PRK03705 310 HPAVVDWAIDCLRYWVETCHVDGFRFDLAT 339 (658)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEEcHh
Confidence 345566778888899999999999999643
No 137
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=26.70 E-value=4.9e+02 Score=23.68 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=34.1
Q ss_pred HHHHHHcCCCeEEeecCCCC-------------CChhhHHHHHHHHHHHHhhCCCeEEEEe
Q 021511 145 TSIIKEYNLDGIDIDYEHFQ-------------ADPNTFAECIGRLIKTLKKNGAISFASI 192 (311)
Q Consensus 145 ~~~~~~~g~DGiDiD~E~~~-------------~d~~~~~~~l~~Lr~~l~~~~~~~~a~~ 192 (311)
+.++.++|+|+|||+.=-|. .+.+-...++++++++.+ ..-+++-+
T Consensus 85 A~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~--~iPVTVKi 143 (323)
T COG0042 85 AKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG--DIPVTVKI 143 (323)
T ss_pred HHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC--CCCeEEEE
Confidence 37888999999999998872 356777888888888875 23444433
No 138
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=26.60 E-value=2e+02 Score=26.40 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEeecC
Q 021511 134 DTWVSNAVASLTSIIKEYNLDGIDIDYE 161 (311)
Q Consensus 134 ~~~~~~~i~si~~~~~~~g~DGiDiD~E 161 (311)
++.++.|++.. ..+++-|||||+|.-=
T Consensus 137 ~~ii~~f~~AA-~ra~~aGfDgVeih~a 163 (343)
T cd04734 137 EEIIAAFADAA-RRCQAGGLDGVELQAA 163 (343)
T ss_pred HHHHHHHHHHH-HHHHHcCCCEEEEccc
Confidence 45567777655 4556789999999983
No 139
>PLN02899 alpha-galactosidase
Probab=26.20 E-value=2e+02 Score=28.75 Aligned_cols=55 Identities=20% Similarity=0.118 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHcCCCeEEeecCCCCC-ChhhHHHHHHHHHHHHhhCCCeEEEEeCCC
Q 021511 137 VSNAVASLTSIIKEYNLDGIDIDYEHFQA-DPNTFAECIGRLIKTLKKNGAISFASIAPY 195 (311)
Q Consensus 137 ~~~~i~si~~~~~~~g~DGiDiD~E~~~~-d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~ 195 (311)
.+.|.+++++...++|+|=|-+|+-++.. +.+. +++++++|++.+.-...+++|+
T Consensus 193 g~a~~~Sla~tfAsWGVDyLKyD~c~~~~~~~~e----y~~ms~AL~aTGRPIvySLspG 248 (633)
T PLN02899 193 GKAFLRSLYDQYAEWGVDFVKHDCVFGDDFDLEE----ITYVSEVLKELDRPIVYSLSPG 248 (633)
T ss_pred hhhhhHHHHHHHHHhCCCEEEEcCCCCCCCChHH----HHHHHHHHHHhCCCeEEEecCC
Confidence 34688999999999999999999977522 2222 3677888888776555555664
No 140
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=26.15 E-value=2.3e+02 Score=26.28 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEeecCC
Q 021511 134 DTWVSNAVASLTSIIKEYNLDGIDIDYEH 162 (311)
Q Consensus 134 ~~~~~~~i~si~~~~~~~g~DGiDiD~E~ 162 (311)
++.++.|++.. +..++-|||||.|.--+
T Consensus 155 ~~ii~~f~~AA-~rA~~AGfDGVEIh~ah 182 (362)
T PRK10605 155 PGIVNDFRQAI-ANAREAGFDLVELHSAH 182 (362)
T ss_pred HHHHHHHHHHH-HHHHHcCCCEEEEcccc
Confidence 34556677544 66677899999997544
No 141
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=26.08 E-value=2.7e+02 Score=26.39 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=52.8
Q ss_pred cCCCCCCHHHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCCChhh
Q 021511 90 WDTGNLSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNT 169 (311)
Q Consensus 90 ~~~~~~~~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~d~~~ 169 (311)
.++.....+.+..+++ .|+- -+|+|=++.+... .....|..-.+ .+...+..+++.||+-|.||.-+.-. .+.
T Consensus 130 ~nP~~~~~e~~~~l~~--~GvN-RiSlGVQsf~~~~--lk~lgR~h~~~-~~~~a~~~~~~~g~~~in~DLIyglP-~QT 202 (416)
T COG0635 130 ANPGTVEAEKFKALKE--AGVN-RISLGVQSFNDEV--LKALGRIHDEE-EAKEAVELARKAGFTSINIDLIYGLP-GQT 202 (416)
T ss_pred eCCCCCCHHHHHHHHH--cCCC-EEEeccccCCHHH--HHHhcCCCCHH-HHHHHHHHHHHcCCCcEEEEeecCCC-CCC
Confidence 3444456888999988 6776 7888887765421 11112221111 23455588888999999999887521 245
Q ss_pred HHHHHHHHHHHHh
Q 021511 170 FAECIGRLIKTLK 182 (311)
Q Consensus 170 ~~~~l~~Lr~~l~ 182 (311)
...+.+.|..++.
T Consensus 203 ~~~~~~~l~~a~~ 215 (416)
T COG0635 203 LESLKEDLEQALE 215 (416)
T ss_pred HHHHHHHHHHHHh
Confidence 5556666666553
No 142
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=25.95 E-value=2.3e+02 Score=24.61 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcC---CCeEEeecCCC----CCChhhHHHHHHHHHHHHhhCCCeE
Q 021511 139 NAVASLTSIIKEYN---LDGIDIDYEHF----QADPNTFAECIGRLIKTLKKNGAIS 188 (311)
Q Consensus 139 ~~i~si~~~~~~~g---~DGiDiD~E~~----~~d~~~~~~~l~~Lr~~l~~~~~~~ 188 (311)
..++++.+++++-. .||-.++.|.- ..|.+.=..|++++|++|.+++.-+
T Consensus 192 ~a~~qvl~m~~~g~v~a~dG~~v~v~adsiCvHGD~p~Al~~~~riR~~l~~~gi~v 248 (252)
T COG1540 192 EALAQVLQMVREGKVTAIDGEWVAVEADSICVHGDNPHALAFARRIRAALEAEGIKV 248 (252)
T ss_pred HHHHHHHHHHhcCceEeeCCcEEeeecceEEEcCCCHHHHHHHHHHHHHHHHcCCee
Confidence 45677778888754 88988888864 3677888999999999999887544
No 143
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=25.83 E-value=1.7e+02 Score=26.65 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=36.1
Q ss_pred chhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC-----CChhhHHHHHHHHHHHHhh
Q 021511 132 SVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ-----ADPNTFAECIGRLIKTLKK 183 (311)
Q Consensus 132 ~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~-----~d~~~~~~~l~~Lr~~l~~ 183 (311)
+.++..+-..-.+.++|.+|||+|.|.=.-..+ +..+.+..-+.||-+++.+
T Consensus 142 dd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~ 198 (394)
T COG0050 142 DDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDS 198 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHh
Confidence 344555555678889999999999987443321 3345577788888888765
No 144
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=25.71 E-value=93 Score=23.28 Aligned_cols=8 Identities=13% Similarity=0.086 Sum_probs=4.5
Q ss_pred EEEEEECC
Q 021511 111 KVALSLGG 118 (311)
Q Consensus 111 kvllsiGG 118 (311)
-.+++.++
T Consensus 81 YrIi~~~e 88 (104)
T PRK14864 81 YVIVMVDE 88 (104)
T ss_pred EEEEEccc
Confidence 35566654
No 145
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=25.26 E-value=1.2e+02 Score=29.12 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=36.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHcCCCe-EEeecCCCCCChhhHHHHHHHHHHHHhh
Q 021511 130 PSSVDTWVSNAVASLTSIIKEYNLDG-IDIDYEHFQADPNTFAECIGRLIKTLKK 183 (311)
Q Consensus 130 ~~~~~~~~~~~i~si~~~~~~~g~DG-iDiD~E~~~~d~~~~~~~l~~Lr~~l~~ 183 (311)
|.+...+++..+..|++++.+.|||| |-+.+-+.+ ....|....+-|+-.+++
T Consensus 99 plrdk~yqq~c~~~I~~yL~engfd~pis~k~l~~P-S~k~F~~IFK~LY~~lDp 152 (622)
T COG5185 99 PLRDKNYQQACQEEIYDYLKENGFDIPISIKFLKQP-SQKGFIIIFKWLYLRLDP 152 (622)
T ss_pred ccccchHHHHHHHHHHHHHHHcCCCcchhHHHhcCC-ccccHHHHHHHHHhccCC
Confidence 45677888999999999999999998 112222212 234677767777666654
No 146
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=25.21 E-value=3.9e+02 Score=21.99 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=27.1
Q ss_pred HHHHHHcCCCeEEeecCCC--CCChhhHHHHHHHHHHHHhhCCCeEEE
Q 021511 145 TSIIKEYNLDGIDIDYEHF--QADPNTFAECIGRLIKTLKKNGAISFA 190 (311)
Q Consensus 145 ~~~~~~~g~DGiDiD~E~~--~~d~~~~~~~l~~Lr~~l~~~~~~~~a 190 (311)
.+.|+++|+-||-+|...- +-|...-+.-+++.-..++.++..+++
T Consensus 20 ~~~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~v 67 (175)
T COG2179 20 PDILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVV 67 (175)
T ss_pred HHHHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEE
Confidence 3689999999999998763 222222333344444444555554444
No 147
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=25.20 E-value=2.1e+02 Score=27.84 Aligned_cols=78 Identities=10% Similarity=0.205 Sum_probs=47.2
Q ss_pred CCHHHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCC--CCCChhhHHH
Q 021511 95 LSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEH--FQADPNTFAE 172 (311)
Q Consensus 95 ~~~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~--~~~d~~~~~~ 172 (311)
...+.++.+|+ .|+. -+|||=.+.+... .....|.--.+.+. ..++.+++.||+-|.+|+-. |.++.+.+..
T Consensus 267 it~e~L~~Lk~--~Gv~-RISIGvQS~~d~v--Lk~igR~ht~e~v~-~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~ 340 (488)
T PRK08207 267 ITEEKLEVLKK--YGVD-RISINPQTMNDET--LKAIGRHHTVEDII-EKFHLAREMGFDNINMDLIIGLPGEGLEEVKH 340 (488)
T ss_pred CCHHHHHHHHh--cCCC-eEEEcCCcCCHHH--HHHhCCCCCHHHHH-HHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHH
Confidence 45678888887 5664 6788876665421 11112222222333 44578999999988888765 4555666666
Q ss_pred HHHHHH
Q 021511 173 CIGRLI 178 (311)
Q Consensus 173 ~l~~Lr 178 (311)
.++.+.
T Consensus 341 tl~~l~ 346 (488)
T PRK08207 341 TLEEIE 346 (488)
T ss_pred HHHHHH
Confidence 666654
No 148
>PRK07667 uridine kinase; Provisional
Probab=25.07 E-value=2.1e+02 Score=23.65 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=27.5
Q ss_pred hCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCC--eEEee
Q 021511 106 RHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLD--GIDID 159 (311)
Q Consensus 106 ~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~D--GiDiD 159 (311)
++++...++.|.|..++.. . ++++.+.+.+.+.|.. .+++|
T Consensus 12 ~~~~~~~iIgI~G~~gsGK---------S----tla~~L~~~l~~~~~~~~~i~~D 54 (193)
T PRK07667 12 KHKENRFILGIDGLSRSGK---------T----TFVANLKENMKQEGIPFHIFHID 54 (193)
T ss_pred hcCCCCEEEEEECCCCCCH---------H----HHHHHHHHHHHhCCCcEEEEEcC
Confidence 3456668999999877642 2 4566666777776644 67666
No 149
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=24.99 E-value=1.3e+02 Score=27.65 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=31.6
Q ss_pred HHHHHHHHHcC--CCeEEeecCCCCC------ChhhHHHH-HHHHHHHHhhCCCeEEEEeCCCC
Q 021511 142 ASLTSIIKEYN--LDGIDIDYEHFQA------DPNTFAEC-IGRLIKTLKKNGAISFASIAPYD 196 (311)
Q Consensus 142 ~si~~~~~~~g--~DGiDiD~E~~~~------d~~~~~~~-l~~Lr~~l~~~~~~~~a~~~p~~ 196 (311)
..+++-+++++ +|+|.||+.+... |++.|... .+++.++|++.+.-++..+.|..
T Consensus 27 ~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v 90 (339)
T cd06602 27 KEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAI 90 (339)
T ss_pred HHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCcc
Confidence 34445666666 8998888776421 23333331 25555556667776666666654
No 150
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=24.89 E-value=1.7e+02 Score=25.58 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=34.8
Q ss_pred HHHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCC
Q 021511 97 PSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHF 163 (311)
Q Consensus 97 ~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~ 163 (311)
.+.+..||+ .|+|+++.+--. + ++ =+.+.+.+++.+.|+||+=+|.-.|
T Consensus 69 ~~~i~~l~~--~g~~~~~~~~P~------v------~~----w~~~~~~~~~~~~Gvdg~w~D~~E~ 117 (265)
T cd06589 69 KSMIDELHD--NGVKLVLWIDPY------I------RE----WWAEVVKKLLVSLGVDGFWTDMGEP 117 (265)
T ss_pred HHHHHHHHH--CCCEEEEEeChh------H------HH----HHHHHHHHhhccCCCCEEeccCCCC
Confidence 566778888 689999977321 1 33 3455555677889999999998655
No 151
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=24.86 E-value=3.2e+02 Score=25.20 Aligned_cols=78 Identities=14% Similarity=0.245 Sum_probs=45.9
Q ss_pred CCHHHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCC--CCCChhhHHH
Q 021511 95 LSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEH--FQADPNTFAE 172 (311)
Q Consensus 95 ~~~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~--~~~d~~~~~~ 172 (311)
...+.++.+++ .|+. -+|||=.+.+... .....|..-.+.+. ..++.+++.|++-|.+|+-+ |.++.+.+..
T Consensus 101 lt~e~l~~lk~--~G~n-risiGvQS~~d~v--L~~l~R~~~~~~~~-~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~ 174 (353)
T PRK05904 101 ITQSQINLLKK--NKVN-RISLGVQSMNNNI--LKQLNRTHTIQDSK-EAINLLHKNGIYNISCDFLYCLPILKLKDLDE 174 (353)
T ss_pred CCHHHHHHHHH--cCCC-EEEEecccCCHHH--HHHcCCCCCHHHHH-HHHHHHHHcCCCcEEEEEeecCCCCCHHHHHH
Confidence 34678888887 5664 4788877665431 11112221222333 44588899999867666554 5556666666
Q ss_pred HHHHHH
Q 021511 173 CIGRLI 178 (311)
Q Consensus 173 ~l~~Lr 178 (311)
-++.+.
T Consensus 175 tl~~~~ 180 (353)
T PRK05904 175 VFNFIL 180 (353)
T ss_pred HHHHHH
Confidence 555543
No 152
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=24.65 E-value=1.8e+02 Score=22.55 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=19.5
Q ss_pred HHHHHhhcCCCCCcEEEceecCCCCCCCC
Q 021511 236 DYFKTQSSNYKGGKVLVSFISDGSGGLAP 264 (311)
Q Consensus 236 ~~~~~~~~~~p~~KivlG~p~~~~~g~~~ 264 (311)
+...+..+.+.+++||+|+|....+...+
T Consensus 38 ~~l~~~i~~~~~~~iVvGlP~~~dG~~~~ 66 (130)
T TIGR00250 38 SRIEELLKEWTPDKIVVGLPLNMDGTEGP 66 (130)
T ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCcCH
Confidence 34444445668899999999976444443
No 153
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.53 E-value=2e+02 Score=25.83 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcC--CCeEEeecCCCC------CChhhHHHHHHHHHHHHhhCCCeEEEEeCCCCC
Q 021511 141 VASLTSIIKEYN--LDGIDIDYEHFQ------ADPNTFAECIGRLIKTLKKNGAISFASIAPYDD 197 (311)
Q Consensus 141 i~si~~~~~~~g--~DGiDiD~E~~~------~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~ 197 (311)
+.++++-++++| +|.|-||..+-. -|.+.|.. .+++.+.+++.+.-+.+.+.|...
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FPd-p~~mi~~l~~~G~k~~l~i~P~i~ 95 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFPD-PKGMIDQLHDLGFRVTLWVHPFIN 95 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccCCccccChhhCCC-HHHHHHHHHHCCCeEEEEECCeeC
Confidence 345557777777 789888765432 24445555 566777777888877777777543
No 154
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=24.42 E-value=92 Score=29.11 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeec
Q 021511 135 TWVSNAVASLTSIIKEYNLDGIDIDY 160 (311)
Q Consensus 135 ~~~~~~i~si~~~~~~~g~DGiDiD~ 160 (311)
+.++.|++.. ..+++-|||||+|.-
T Consensus 147 ~ii~~f~~AA-~ra~~AGfDgVEih~ 171 (382)
T cd02931 147 TFVGKFGESA-VIAKEAGFDGVEIHA 171 (382)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEec
Confidence 5566777544 566678999999987
No 155
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=24.33 E-value=1.5e+02 Score=27.20 Aligned_cols=53 Identities=19% Similarity=0.400 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcC--CCeEEeecCCCC------CChhhHHHHHHHHHHHHhhCCCeEEEEeCC
Q 021511 141 VASLTSIIKEYN--LDGIDIDYEHFQ------ADPNTFAECIGRLIKTLKKNGAISFASIAP 194 (311)
Q Consensus 141 i~si~~~~~~~g--~DGiDiD~E~~~------~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p 194 (311)
+.++++-+++++ +|.|-+|+++-. =|.+.|.. .+++.++|++.+..+++.+-|
T Consensus 26 v~~v~~~~r~~~IP~D~i~lDidy~~~~~~Ft~d~~~FPd-p~~mv~~L~~~G~klv~~i~P 86 (332)
T cd06601 26 LEEVVEGYRDNNIPLDGLHVDVDFQDNYRTFTTNGGGFPN-PKEMFDNLHNKGLKCSTNITP 86 (332)
T ss_pred HHHHHHHHHHcCCCCceEEEcCchhcCCCceeecCCCCCC-HHHHHHHHHHCCCeEEEEecC
Confidence 345556666666 899999988752 13344433 245555556666655444433
No 156
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=24.18 E-value=1.6e+02 Score=27.69 Aligned_cols=42 Identities=17% Similarity=0.126 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCCeEEeecCCCC---CChhhHHHHHHHHHHHH
Q 021511 140 AVASLTSIIKEYNLDGIDIDYEHFQ---ADPNTFAECIGRLIKTL 181 (311)
Q Consensus 140 ~i~si~~~~~~~g~DGiDiD~E~~~---~d~~~~~~~l~~Lr~~l 181 (311)
+++.+++..+-|||||-=|+=|--. ++.++..+||..+++.-
T Consensus 175 ~A~klv~vAkyYGfdGwFINqET~G~~~~~a~~M~~f~ly~ke~~ 219 (553)
T COG4724 175 IARKLVDVAKYYGFDGWFINQETTGDVKPLAEKMRQFMLYSKEYA 219 (553)
T ss_pred hHHHHHHHHHhcCcceeEecccccCCCcchHHHHHHHHHHHHhcc
Confidence 5677889999999999999988642 34456666666665443
No 157
>PLN02411 12-oxophytodienoate reductase
Probab=24.17 E-value=2.6e+02 Score=26.26 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeecCC
Q 021511 135 TWVSNAVASLTSIIKEYNLDGIDIDYEH 162 (311)
Q Consensus 135 ~~~~~~i~si~~~~~~~g~DGiDiD~E~ 162 (311)
+.++.|++.. ...++-|||||+|.-=+
T Consensus 162 ~ii~~f~~AA-~rA~~AGFDGVEIH~Ah 188 (391)
T PLN02411 162 EVVEHYRQAA-LNAIRAGFDGIEIHGAH 188 (391)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEcccc
Confidence 3456666544 55667899999998554
No 158
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=23.69 E-value=1e+02 Score=20.61 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcC----CCeEEeecC
Q 021511 140 AVASLTSIIKEYN----LDGIDIDYE 161 (311)
Q Consensus 140 ~i~si~~~~~~~g----~DGiDiD~E 161 (311)
|+==+.-+++-|+ +|||+++|+
T Consensus 38 f~vFl~iiLeIYNsSvlLdgv~v~w~ 63 (64)
T PRK02624 38 FLVFLLIILQIYNQSLLLQGFSVDWN 63 (64)
T ss_pred HHHHHHHHHHHhCcceeecCcccCcC
Confidence 3333445677777 999999997
No 159
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=23.59 E-value=2.6e+02 Score=19.95 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcCCCeEEeecCCC-----------CCChhhHHHHHHHHHHHHhh
Q 021511 140 AVASLTSIIKEYNLDGIDIDYEHF-----------QADPNTFAECIGRLIKTLKK 183 (311)
Q Consensus 140 ~i~si~~~~~~~g~DGiDiD~E~~-----------~~d~~~~~~~l~~Lr~~l~~ 183 (311)
......+.++++|++=-=+|-|+. ++++-+|..|+++|.+.++.
T Consensus 27 al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~~ 81 (88)
T PF04468_consen 27 ALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAREFKT 81 (88)
T ss_pred HHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhCc
Confidence 444556778888876555566664 36778999999999998864
No 160
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=23.57 E-value=87 Score=31.36 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEeecC
Q 021511 133 VDTWVSNAVASLTSIIKEYNLDGIDIDYE 161 (311)
Q Consensus 133 ~~~~~~~~i~si~~~~~~~g~DGiDiD~E 161 (311)
|.+-|.=|++++.-++++|.+||+-+|--
T Consensus 277 r~EVR~Fll~nal~Wl~~yHiDGlRvDAV 305 (628)
T COG0296 277 RNEVRNFLLANALYWLEEYHIDGLRVDAV 305 (628)
T ss_pred cHHHHHHHHHHHHHHHHHhCCcceeeehh
Confidence 66667678899999999999999988853
No 161
>PRK12677 xylose isomerase; Provisional
Probab=23.48 E-value=3e+02 Score=25.81 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCCeEEeecCCC--C-CChhhHHHHHHHHHHHHhhCCCeEE
Q 021511 143 SLTSIIKEYNLDGIDIDYEHF--Q-ADPNTFAECIGRLIKTLKKNGAISF 189 (311)
Q Consensus 143 si~~~~~~~g~DGiDiD~E~~--~-~d~~~~~~~l~~Lr~~l~~~~~~~~ 189 (311)
..++.+.+.||+||.|..+.+ - .+...-...++++++.+...++-+.
T Consensus 35 E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~ 84 (384)
T PRK12677 35 EAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVP 84 (384)
T ss_pred HHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeE
Confidence 444788899999999975532 1 1111222468889999988887543
No 162
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=23.43 E-value=1.7e+02 Score=26.14 Aligned_cols=54 Identities=26% Similarity=0.400 Sum_probs=32.7
Q ss_pred HHHHHHHHHcC--CCeEEeecCCCC--C------ChhhHHHHHHHHHHHHhhCCCeEEEEeCCCC
Q 021511 142 ASLTSIIKEYN--LDGIDIDYEHFQ--A------DPNTFAECIGRLIKTLKKNGAISFASIAPYD 196 (311)
Q Consensus 142 ~si~~~~~~~g--~DGiDiD~E~~~--~------d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~ 196 (311)
..+++-+++.| +|.+-||..+-. . |.+.|.. .+++.++|++.+.-+++.+.|..
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd-~~~~i~~l~~~G~~~~~~~~P~i 90 (308)
T cd06593 27 NEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPD-PEGMLSRLKEKGFKVCLWINPYI 90 (308)
T ss_pred HHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCC-HHHHHHHHHHCCCeEEEEecCCC
Confidence 34556777778 888666654431 1 3344544 36666667777776766666654
No 163
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=23.19 E-value=2.3e+02 Score=25.67 Aligned_cols=27 Identities=11% Similarity=-0.080 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHcCCCeEEeecCCC
Q 021511 137 VSNAVASLTSIIKEYNLDGIDIDYEHF 163 (311)
Q Consensus 137 ~~~~i~si~~~~~~~g~DGiDiD~E~~ 163 (311)
++-+.+.+.+.+.+.|+||+=+|.-.|
T Consensus 134 ~~w~~~~~~~~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 134 REYYWKQLKKNYYDKGVDAWWLDAAEP 160 (319)
T ss_pred HHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 333555566777789999999998554
No 164
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=23.01 E-value=3.3e+02 Score=22.92 Aligned_cols=67 Identities=18% Similarity=0.062 Sum_probs=40.0
Q ss_pred HHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhhHHHHHHhhCCeeeEEEecccCC
Q 021511 146 SIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGDLIDYVNFQFYAY 225 (311)
Q Consensus 146 ~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~y~~~~~~~~d~id~~~~~~y~~ 225 (311)
+.+.+.|-|-|-|.+|.. +....+++.+| +.+...-.++.|..+- ..+..+.+.+|++.+|.-++
T Consensus 74 ~~~~~~g~~~i~~H~E~~----~~~~~~i~~ik----~~g~k~GialnP~T~~-------~~~~~~l~~vD~VlvMsV~P 138 (201)
T PF00834_consen 74 EEFAEAGADYITFHAEAT----EDPKETIKYIK----EAGIKAGIALNPETPV-------EELEPYLDQVDMVLVMSVEP 138 (201)
T ss_dssp HHHHHHT-SEEEEEGGGT----TTHHHHHHHHH----HTTSEEEEEE-TTS-G-------GGGTTTGCCSSEEEEESS-T
T ss_pred HHHHhcCCCEEEEcccch----hCHHHHHHHHH----HhCCCEEEEEECCCCc-------hHHHHHhhhcCEEEEEEecC
Confidence 555677999999999943 23344455444 4577777777776531 12345667777777777765
Q ss_pred CC
Q 021511 226 AQ 227 (311)
Q Consensus 226 ~~ 227 (311)
+.
T Consensus 139 G~ 140 (201)
T PF00834_consen 139 GF 140 (201)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 165
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=22.96 E-value=4e+02 Score=22.57 Aligned_cols=72 Identities=17% Similarity=0.110 Sum_probs=40.1
Q ss_pred HHHHHHHHHc------CCCeEEeecCCCCCChhhHHHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhhHHHHHHhhCCee
Q 021511 142 ASLTSIIKEY------NLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGDLI 215 (311)
Q Consensus 142 ~si~~~~~~~------g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~y~~~~~~~~d~i 215 (311)
+.+++.++++ +=.||-|--=-| --+..|+.++-+++++.+..+..-.+.+.+ ...+..+.+++
T Consensus 22 eel~~~~~~~~~f~~~sggGVt~SGGEP----llq~~fl~~l~~~~k~~gi~~~leTnG~~~-------~~~~~~l~~~~ 90 (213)
T PRK10076 22 DALEREVMKDDIFFRTSGGGVTLSGGEV----LMQAEFATRFLQRLRLWGVSCAIETAGDAP-------ASKLLPLAKLC 90 (213)
T ss_pred HHHHHHHHhhhHhhcCCCCEEEEeCchH----HcCHHHHHHHHHHHHHcCCCEEEECCCCCC-------HHHHHHHHHhc
Confidence 3444555553 336888753322 334466777777777777655554444322 12334555677
Q ss_pred eEEEecccC
Q 021511 216 DYVNFQFYA 224 (311)
Q Consensus 216 d~~~~~~y~ 224 (311)
|.+.+|.=.
T Consensus 91 D~~l~DiK~ 99 (213)
T PRK10076 91 DEVLFDLKI 99 (213)
T ss_pred CEEEEeecc
Confidence 777777653
No 166
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=22.81 E-value=2e+02 Score=27.67 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeecC
Q 021511 135 TWVSNAVASLTSIIKEYNLDGIDIDYE 161 (311)
Q Consensus 135 ~~~~~~i~si~~~~~~~g~DGiDiD~E 161 (311)
+-++.+.+.+..+++++|+||+-||--
T Consensus 209 ~V~~~l~~~~~~w~~~~giDGfRlDav 235 (479)
T PRK09441 209 EVREELKYWAKWYMETTGFDGFRLDAV 235 (479)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEhhh
Confidence 334445554444555699999999953
No 167
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=22.76 E-value=3.2e+02 Score=25.34 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=44.5
Q ss_pred CCHHHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCC--CCChhhHHH
Q 021511 95 LSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHF--QADPNTFAE 172 (311)
Q Consensus 95 ~~~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~--~~d~~~~~~ 172 (311)
...+.++.+|+ .|+. -+|||=.+.+... .....|.--.+... ..++.+++.||+-|.+|+-+. .++.+.+..
T Consensus 101 ~~~~~l~~l~~--~G~n-rislGvQS~~~~~--L~~l~R~~~~~~~~-~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~ 174 (370)
T PRK06294 101 LSESYIRALAL--TGIN-RISIGVQTFDDPL--LKLLGRTHSSSKAI-DAVQECSEHGFSNLSIDLIYGLPTQSLSDFIV 174 (370)
T ss_pred CCHHHHHHHHH--CCCC-EEEEccccCCHHH--HHHcCCCCCHHHHH-HHHHHHHHcCCCeEEEEeecCCCCCCHHHHHH
Confidence 44678888887 5664 5688877665431 11112221122333 344788999999888887654 444455554
Q ss_pred HHHHHH
Q 021511 173 CIGRLI 178 (311)
Q Consensus 173 ~l~~Lr 178 (311)
-++.+.
T Consensus 175 ~l~~~~ 180 (370)
T PRK06294 175 DLHQAI 180 (370)
T ss_pred HHHHHH
Confidence 444443
No 168
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=22.65 E-value=5.2e+02 Score=22.57 Aligned_cols=64 Identities=25% Similarity=0.304 Sum_probs=39.7
Q ss_pred HHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhhHHHHHHhhCC-eeeEEEec
Q 021511 146 SIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGD-LIDYVNFQ 221 (311)
Q Consensus 146 ~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~y~~~~~~~~d-~id~~~~~ 221 (311)
+.+++.|.||+=|--|.+ .-..++++.+++.+.-....++|..+. .-...+.+..+ ++-+|+..
T Consensus 109 ~~~~~aGvdgviipDlp~--------ee~~~~~~~~~~~gl~~i~lv~P~T~~----eri~~i~~~~~gfiy~vs~~ 173 (256)
T TIGR00262 109 AKCKEVGVDGVLVADLPL--------EESGDLVEAAKKHGVKPIFLVAPNADD----ERLKQIAEKSQGFVYLVSRA 173 (256)
T ss_pred HHHHHcCCCEEEECCCCh--------HHHHHHHHHHHHCCCcEEEEECCCCCH----HHHHHHHHhCCCCEEEEECC
Confidence 677888999998866633 124556666677777666666665431 12233444555 78777764
No 169
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=22.55 E-value=2e+02 Score=18.73 Aligned_cols=38 Identities=29% Similarity=0.294 Sum_probs=19.6
Q ss_pred HHHHHHHHcCCCeEE-eecCCCCCCh-hhHHHHHHHHHHH
Q 021511 143 SLTSIIKEYNLDGID-IDYEHFQADP-NTFAECIGRLIKT 180 (311)
Q Consensus 143 si~~~~~~~g~DGiD-iD~E~~~~d~-~~~~~~l~~Lr~~ 180 (311)
.+.+-|++.|+||.- |-||.+.-++ +.+.+-+.-||+.
T Consensus 4 ~i~~~L~~~GYdG~~siE~ED~~~~~~~G~~~a~~~lr~~ 43 (55)
T PF07582_consen 4 RIFSALREIGYDGWLSIEHEDALMDPEEGAREAAAFLRKL 43 (55)
T ss_dssp HHHHHHHHTT--SEEEE---STTTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCceEEEEeecCCCCHHHHHHHHHHHHHHh
Confidence 345889999999964 7777654333 4455544444443
No 170
>PF09010 AsiA: Anti-Sigma Factor A; InterPro: IPR015100 Anti-sigma factor A is a transcriptional inhibitor that inhibits sigma 70-directed transcription by weakening its interaction with the core of the host's RNA polymerase. It is an all-helical protein, composed of six helical segments and intervening loops and turns, as well as a helix-turn-helix DNA binding motif, although neither free anti-sigma factor nor anti-sigma factor bound to sigma-70 has been shown to interact directly with DNA. In solution, the protein forms a symmetric dimer of small (10.59 kDa) protomers, which are composed of helix and coil regions and are devoid of beta-strand/sheet secondary structural elements []. ; PDB: 1TKV_A 1JR5_B 1TLH_A 1TL6_A.
Probab=22.54 E-value=79 Score=22.87 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHHH
Q 021511 143 SLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLI 178 (311)
Q Consensus 143 si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr 178 (311)
.++++|-++|.| || -+++++|+.|+.|+-
T Consensus 13 a~aSiLIKfg~d--dI-----l~~q~~FIaFLNElG 41 (91)
T PF09010_consen 13 AVASILIKFGRD--DI-----LENQELFIAFLNELG 41 (91)
T ss_dssp HHHHHHHHTTTH--HH-----HTSHHHHHHHHHHHT
T ss_pred HHHHHHHHcChH--HH-----HHhHHHHHHHHHHhc
Confidence 566888888887 43 256789999999973
No 171
>TIGR03860 FMN_nitrolo FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents.
Probab=22.47 E-value=1.5e+02 Score=28.02 Aligned_cols=46 Identities=13% Similarity=0.271 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhCCCe
Q 021511 139 NAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAI 187 (311)
Q Consensus 139 ~~i~si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~~~~ 187 (311)
++++.|.++++.-++||+.|-+...+ ..+..|+.++.-.|++.|+.
T Consensus 365 ~vad~l~~~~~~~g~dgf~l~~~~~p---~~l~~f~~~VvP~L~~rGl~ 410 (422)
T TIGR03860 365 QVADQLEEWFEEGAADGFNLMPPVLP---GGLEDFVDLVVPELQRRGLF 410 (422)
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCc---ccHHHHHHhcCHHhccCCCC
Confidence 45667777778889999999766533 56778888888778776643
No 172
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.44 E-value=4e+02 Score=25.22 Aligned_cols=76 Identities=12% Similarity=0.187 Sum_probs=42.0
Q ss_pred HHHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHH-----HHHHHHHHHHHHHcC--CC-eEEe--ecCCCCCC
Q 021511 97 PSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWV-----SNAVASLTSIIKEYN--LD-GIDI--DYEHFQAD 166 (311)
Q Consensus 97 ~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~-----~~~i~si~~~~~~~g--~D-GiDi--D~E~~~~d 166 (311)
...++.+++ .|.++++-|||++.- .-+|..+.+-| +.+..++....++.+ +| ...+ .-||. +
T Consensus 54 l~kL~~fQ~--aGh~~ivLigd~ta~----IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~ns~w~--~ 125 (401)
T COG0162 54 LMKLRRFQD--AGHKPIVLIGDATAM----IGDPSGKSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWL--K 125 (401)
T ss_pred HHHHHHHHH--CCCeEEEEeccccee----cCCCCCCHHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEechHHh--C
Confidence 455666666 799999999999754 22332222222 223345555666655 44 2222 11222 3
Q ss_pred hhhHHHHHHHHHHH
Q 021511 167 PNTFAECIGRLIKT 180 (311)
Q Consensus 167 ~~~~~~~l~~Lr~~ 180 (311)
.-+|..|++.+-+.
T Consensus 126 ~~~y~~~l~~~g~~ 139 (401)
T COG0162 126 KLNYLDFLRDVGKH 139 (401)
T ss_pred cCCHHHHHHHHHhH
Confidence 35788888888444
No 173
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=22.15 E-value=2.7e+02 Score=25.71 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=34.1
Q ss_pred cEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEE---eecCCCCCChhhHHHHHHHHHHHH
Q 021511 110 VKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGID---IDYEHFQADPNTFAECIGRLIKTL 181 (311)
Q Consensus 110 ~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiD---iD~E~~~~d~~~~~~~l~~Lr~~l 181 (311)
-.|.+|+.|..++.- ..+=+.++.+++|.|-|. ||||.- -.--...++|+++..
T Consensus 28 ~~VcVSFSGGKDS~l---------------mLhL~~~~ar~~~~~~i~VlfiD~E~Q---Ys~TidyV~em~~~~ 84 (407)
T COG3969 28 PRVCVSFSGGKDSGL---------------MLHLVAEVARENGRDKISVLFIDWEAQ---YSCTIDYVQEMRESY 84 (407)
T ss_pred CeEEEEecCCCchhH---------------HHHHHHHHHHHhCCCceEEEEEcchhh---hhhHHHHHHHHHhcc
Confidence 468899988766531 223344778888875555 788853 233455677777653
No 174
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=22.08 E-value=1.9e+02 Score=25.31 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=44.3
Q ss_pred HHHHHHHHHcC--CCeEEeecCCCCC--------ChhhHHHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhhHHHHHHh-
Q 021511 142 ASLTSIIKEYN--LDGIDIDYEHFQA--------DPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKS- 210 (311)
Q Consensus 142 ~si~~~~~~~g--~DGiDiD~E~~~~--------d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~y~~~~~~- 210 (311)
.++++-+++++ +|++.||+.+-.. |++.|.. .+++.+.|++++..+++.+.|.. ...|...+.+
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~~~~~~~~f~~~~d~~~Fpd-p~~~i~~l~~~g~~~~~~~~P~v----~~w~~~~~~~~ 101 (265)
T cd06589 27 LEVIDGMRENDIPLDGFVLDDDYTDGYGDFTFDWDAGKFPN-PKSMIDELHDNGVKLVLWIDPYI----REWWAEVVKKL 101 (265)
T ss_pred HHHHHHHHHcCCCccEEEECcccccCCceeeeecChhhCCC-HHHHHHHHHHCCCEEEEEeChhH----HHHHHHHHHHh
Confidence 34446666665 8999998887521 2334444 45666666778888888777753 2334333322
Q ss_pred -hCCeeeEEEeccc
Q 021511 211 -YGDLIDYVNFQFY 223 (311)
Q Consensus 211 -~~d~id~~~~~~y 223 (311)
.-.-||.+-.|.-
T Consensus 102 ~~~~Gvdg~w~D~~ 115 (265)
T cd06589 102 LVSLGVDGFWTDMG 115 (265)
T ss_pred hccCCCCEEeccCC
Confidence 2233555555544
No 175
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=22.05 E-value=39 Score=25.60 Aligned_cols=14 Identities=7% Similarity=0.256 Sum_probs=9.7
Q ss_pred cCCCCCcEEEceec
Q 021511 243 SNYKGGKVLVSFIS 256 (311)
Q Consensus 243 ~~~p~~KivlG~p~ 256 (311)
.|+|++.||||+-.
T Consensus 86 ~GVpk~dIVLgF~~ 99 (111)
T PF08869_consen 86 AGVPKEDIVLGFHP 99 (111)
T ss_dssp TT--GGGEEETTS-
T ss_pred cCCCHHHEEEccCC
Confidence 49999999999843
No 176
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=21.98 E-value=60 Score=20.05 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHHHHHHhccC
Q 021511 3 MNQIVSKLFISLVILQAVLFPC 24 (311)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~ 24 (311)
|.||+....+++.++++.|-+-
T Consensus 1 MkKi~~~~i~~~~~~L~aCQaN 22 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQAN 22 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhhc
Confidence 3455544444444555555443
No 177
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=21.80 E-value=85 Score=32.25 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEee
Q 021511 134 DTWVSNAVASLTSIIKEYNLDGIDID 159 (311)
Q Consensus 134 ~~~~~~~i~si~~~~~~~g~DGiDiD 159 (311)
.+-++-+++++.-++++|++||+-||
T Consensus 365 ~eVr~fLl~~~~~Wl~ey~IDGfRfD 390 (758)
T PLN02447 365 WEVLRFLLSNLRWWLEEYKFDGFRFD 390 (758)
T ss_pred HHHHHHHHHHHHHHHHHhCccccccc
Confidence 34455677888889999999999998
No 178
>PRK05660 HemN family oxidoreductase; Provisional
Probab=21.76 E-value=3.8e+02 Score=24.92 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecC--CCCCChhhHH
Q 021511 94 NLSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYE--HFQADPNTFA 171 (311)
Q Consensus 94 ~~~~~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E--~~~~d~~~~~ 171 (311)
....+.++.+|+ .|+. -+|||=.+.+... .....|..-.+... ..++.+++.||+-|.+|+- -|.++.+.+.
T Consensus 104 ~l~~e~l~~Lk~--~Gv~-risiGvqS~~~~~--L~~l~r~~~~~~~~-~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~ 177 (378)
T PRK05660 104 TVEADRFVGYQR--AGVN-RISIGVQSFSEEK--LKRLGRIHGPDEAK-RAAKLAQGLGLRSFNLDLMHGLPDQSLEEAL 177 (378)
T ss_pred cCCHHHHHHHHH--cCCC-EEEeccCcCCHHH--HHHhCCCCCHHHHH-HHHHHHHHcCCCeEEEEeecCCCCCCHHHHH
Confidence 345678888887 5654 5666665554321 11111211122233 3457888999985555554 4555555555
Q ss_pred HHHHHHH
Q 021511 172 ECIGRLI 178 (311)
Q Consensus 172 ~~l~~Lr 178 (311)
..++.+.
T Consensus 178 ~~l~~~~ 184 (378)
T PRK05660 178 DDLRQAI 184 (378)
T ss_pred HHHHHHH
Confidence 5444443
No 179
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=21.70 E-value=3.2e+02 Score=25.52 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=29.0
Q ss_pred HHHHHcCCCeEEeecC--CCC-CChhhHHHHHHHHHHHHhhCCCeEE
Q 021511 146 SIIKEYNLDGIDIDYE--HFQ-ADPNTFAECIGRLIKTLKKNGAISF 189 (311)
Q Consensus 146 ~~~~~~g~DGiDiD~E--~~~-~d~~~~~~~l~~Lr~~l~~~~~~~~ 189 (311)
+-+.+.|||||.+... +|- .+...-..-++++++.++..++-+.
T Consensus 39 ~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~ 85 (382)
T TIGR02631 39 HKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVP 85 (382)
T ss_pred HHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEE
Confidence 6688899999999633 221 1112223457889999999887543
No 180
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=21.67 E-value=1.5e+02 Score=21.38 Aligned_cols=66 Identities=11% Similarity=0.130 Sum_probs=31.7
Q ss_pred EEEEECCCCCCCCceec-------CCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHh
Q 021511 112 VALSLGGDSVSSGKVYF-------NPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLK 182 (311)
Q Consensus 112 vllsiGG~~~~~~~~~~-------~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~ 182 (311)
-.++|||..++.-++.- +...+-+|++.....+-.++++|+. =.++=| .....-.+|++.|-+.|+
T Consensus 10 ~~lAiGG~~g~~~Wfvtt~~v~~~~~~~~~eF~k~i~~~~d~~l~~Y~~-l~N~V~----~~N~~HIRfLk~lGA~f~ 82 (86)
T PF11090_consen 10 RPLAIGGNNGGCLWFVTTNKVKSLTKKERREFRKLIKEYLDKMLKQYPV-LWNFVW----VGNKSHIRFLKSLGAVFH 82 (86)
T ss_pred eEEEEccccCCeEEEEECcHHhhcCHhhhHHHHHHHHHHHHHHHHHhhh-eeEEEE----eCCHHHHHHHHhcCcEEc
Confidence 36899998855432211 1122334554444444445555543 122222 233456677766654443
No 181
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=21.52 E-value=2e+02 Score=25.09 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=22.5
Q ss_pred HHHHHcCCCeEEeecCCCCCChhhHHHHHH
Q 021511 146 SIIKEYNLDGIDIDYEHFQADPNTFAECIG 175 (311)
Q Consensus 146 ~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~ 175 (311)
+.+..-|||.|-||.|+...+......+++
T Consensus 27 e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~ 56 (249)
T TIGR02311 27 EICAGAGFDWLLIDGEHAPNDVRTILSQLQ 56 (249)
T ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHH
Confidence 677788999999999998655555555443
No 182
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=21.36 E-value=2e+02 Score=26.00 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=33.5
Q ss_pred HHHHHHHHHcC--CCeEEeecCCCC--C------ChhhHHHHHHHHHHHHhhCCCeEEEEeCCCC
Q 021511 142 ASLTSIIKEYN--LDGIDIDYEHFQ--A------DPNTFAECIGRLIKTLKKNGAISFASIAPYD 196 (311)
Q Consensus 142 ~si~~~~~~~g--~DGiDiD~E~~~--~------d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~ 196 (311)
..+++-+++++ +|.|-||+.+-. . |++.|.. .+++.+.|++++..+++.+-|..
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPd-p~~mi~~L~~~G~kv~~~i~P~v 90 (319)
T cd06591 27 LDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFPD-PKAMVRELHEMNAELMISIWPTF 90 (319)
T ss_pred HHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCCC-HHHHHHHHHHCCCEEEEEecCCc
Confidence 34446666664 899999987532 1 3444443 45666666777876666666654
No 183
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.21 E-value=1.8e+02 Score=26.00 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=31.8
Q ss_pred HHHHHHHHHcC--CCeEEeecCCCC---------------CChhhHHHHHHHHHHHHhhCCCeEEEEeCCC
Q 021511 142 ASLTSIIKEYN--LDGIDIDYEHFQ---------------ADPNTFAECIGRLIKTLKKNGAISFASIAPY 195 (311)
Q Consensus 142 ~si~~~~~~~g--~DGiDiD~E~~~---------------~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~ 195 (311)
..+++-+++++ +|+|-||+.+-. =|++.|.. .+++.+.|++.+..+++.+.|.
T Consensus 28 ~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPd-p~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 28 LALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPD-PEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred HHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCC-HHHHHHHHHHCCCEEEEEeCCC
Confidence 44556666666 899988754310 12334433 3555556667787777777775
No 184
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=21.21 E-value=5.4e+02 Score=23.49 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHcCCCeEEeecCCC
Q 021511 137 VSNAVASLTSIIKEYNLDGIDIDYEHF 163 (311)
Q Consensus 137 ~~~~i~si~~~~~~~g~DGiDiD~E~~ 163 (311)
++=+.+.+.+++.+.|+||+=+|+-.|
T Consensus 140 ~~ww~~~~~~~~~~~Gvdg~w~D~~Ep 166 (339)
T cd06602 140 QEWWTDEIKDFHDQVPFDGLWIDMNEP 166 (339)
T ss_pred HHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 334555566778889999999998766
No 185
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=20.93 E-value=1.7e+02 Score=25.51 Aligned_cols=50 Identities=12% Similarity=0.156 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhh--CCCeEEEEe
Q 021511 137 VSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKK--NGAISFASI 192 (311)
Q Consensus 137 ~~~~i~si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~--~~~~~~a~~ 192 (311)
++.++ ++++++.++++||+-||--.-- .. .++++++++++. ...+++.-+
T Consensus 147 ~~~i~-~~~~~w~~~giDGfR~D~~~~~-~~----~~~~~~~~~~~~~~~~~~~i~E~ 198 (316)
T PF00128_consen 147 REYII-DVLKFWIEEGIDGFRLDAAKHI-PK----EFWKEFRDEVKEEKPDFFLIGEV 198 (316)
T ss_dssp HHHHH-HHHHHHHHTTESEEEETTGGGS-SH----HHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hhhhc-ccccchhhceEeEEEEcccccc-ch----hhHHHHhhhhhhhccccceeeee
Confidence 44444 4777777788999999964321 12 556666666554 234555433
No 186
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.87 E-value=5.5e+02 Score=22.12 Aligned_cols=63 Identities=13% Similarity=0.213 Sum_probs=39.1
Q ss_pred HHHHHcCCCeEEee---cCCCCCChhhHHHHHHHHHHHHhhCCCeEEEEeCCCCCchhhhhHHHHHHhhCCeeeEEEe
Q 021511 146 SIIKEYNLDGIDID---YEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGDLIDYVNF 220 (311)
Q Consensus 146 ~~~~~~g~DGiDiD---~E~~~~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~y~~~~~~~~d~id~~~~ 220 (311)
+.+++.|.|||=|- +|.. .-+.++.+.+++.+.-....+.|..+. .-...+.+..|.+-+|++
T Consensus 95 ~~~~~~Gadgvii~dlp~e~~--------~~~~~~~~~~~~~Gl~~~~~v~p~T~~----e~l~~~~~~~~~~l~msv 160 (244)
T PRK13125 95 NMARDVGADGVLFPDLLIDYP--------DDLEKYVEIIKNKGLKPVFFTSPKFPD----LLIHRLSKLSPLFIYYGL 160 (244)
T ss_pred HHHHHcCCCEEEECCCCCCcH--------HHHHHHHHHHHHcCCCEEEEECCCCCH----HHHHHHHHhCCCEEEEEe
Confidence 67778899999985 3422 124566777778888777777775431 112333455666666654
No 187
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.85 E-value=1.8e+02 Score=26.98 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=41.4
Q ss_pred CCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC--------CC-------hhhHHH
Q 021511 108 SNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ--------AD-------PNTFAE 172 (311)
Q Consensus 108 ~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~--------~d-------~~~~~~ 172 (311)
++..|++-+-|.+.+ +.+.. .+++ +++..+|.||+=+=+-||. -| ++.+..
T Consensus 114 ~~k~vlvFvHGfNnt----f~dav------~R~a----qI~~d~g~~~~pVvFSWPS~g~l~~Yn~DreS~~~Sr~aLe~ 179 (377)
T COG4782 114 SAKTVLVFVHGFNNT----FEDAV------YRTA----QIVHDSGNDGVPVVFSWPSRGSLLGYNYDRESTNYSRPALER 179 (377)
T ss_pred CCCeEEEEEcccCCc----hhHHH------HHHH----HHHhhcCCCcceEEEEcCCCCeeeecccchhhhhhhHHHHHH
Confidence 578899999998765 11211 1234 8889999999999999883 12 245666
Q ss_pred HHHHHHHHH
Q 021511 173 CIGRLIKTL 181 (311)
Q Consensus 173 ~l~~Lr~~l 181 (311)
+|+.|++..
T Consensus 180 ~lr~La~~~ 188 (377)
T COG4782 180 LLRYLATDK 188 (377)
T ss_pred HHHHHHhCC
Confidence 777776654
No 188
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=20.80 E-value=4e+02 Score=23.93 Aligned_cols=167 Identities=10% Similarity=0.086 Sum_probs=75.8
Q ss_pred HHHHHHHhhCCCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcC-CCeEEeecCCCC--C-ChhhHHHH
Q 021511 98 SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN-LDGIDIDYEHFQ--A-DPNTFAEC 173 (311)
Q Consensus 98 ~~i~~lk~~~~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g-~DGiDiD~E~~~--~-d~~~~~~~ 173 (311)
..+..+++ .|..+...+--+... .-+..++.|. .+.+.+.+-++..+ +|||=++.-.-. + ..+.=..|
T Consensus 49 g~~~~a~~--~g~e~vp~~~a~A~P-----~G~v~~~aye-~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~~~D~EG~L 120 (292)
T PF07364_consen 49 GFLDAAEA--QGWEVVPLLWAAAEP-----GGPVTREAYE-RLRDEILDRLRAAGPLDGVLLDLHGAMVAEGYDDGEGDL 120 (292)
T ss_dssp HHHHHHHH--TT-EEEEEEEEEE-S-----EE-B-HHHHH-HHHHHHHHHHHHS---SEEEEEE-S---BSS-SSHHHHH
T ss_pred HHHHHHHH--CCCEEEeeEeeeecC-----CCcccHHHHH-HHHHHHHHHHHhcCCcCEEEEeccCcEeecCCCCchHHH
Confidence 34444555 478887766443322 1244566654 57788888888886 999999987641 1 12233458
Q ss_pred HHHHHHHHhhCCCeEEEEeCCCCCchhhhhHHHHHHhhCCeeeEEEecccCCCCCCCH-H---HHHHHHHHhhc-CCCCC
Q 021511 174 IGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGDLIDYVNFQFYAYAQGTSV-S---QFMDYFKTQSS-NYKGG 248 (311)
Q Consensus 174 l~~Lr~~l~~~~~~~~a~~~p~~~~~~~~~y~~~~~~~~d~id~~~~~~y~~~~~~~~-~---~~~~~~~~~~~-~~p~~ 248 (311)
++++|+.+.+.- .+.++.-+... -.+.+.+.+|.+ +.|-.| +.... + ...+......+ +..+.
T Consensus 121 l~rvR~~vGp~v-pI~~tlDlHaN------vs~~mv~~ad~~--~~yrty---PH~D~~etg~~aa~ll~~~l~g~~rp~ 188 (292)
T PF07364_consen 121 LRRVRAIVGPDV-PIAATLDLHAN------VSPRMVEAADII--VGYRTY---PHIDMYETGERAARLLLRALRGEIRPV 188 (292)
T ss_dssp HHHHHHHHTTTS-EEEEEE-TT----------HHHHHH-SEE--EE---S---S---HHHHHHHHHHHHHHTTT-SS--E
T ss_pred HHHHHHHhCCCC-eEEEEeCCCCC------ccHHHHHhCCEE--EEcCCC---CccCHHHHHHHHHHHHHHHHcCCCCce
Confidence 999999998743 33344333221 123444555443 233333 22221 1 12222333222 34555
Q ss_pred cEEEceecCC-----CCCCCChhhHHHHHHHHhcCCCCCeE
Q 021511 249 KVLVSFISDG-----SGGLAPGDGFFTACSRLKSQKQLHGI 284 (311)
Q Consensus 249 KivlG~p~~~-----~~g~~~~~~~~~~~~~~~~~~~~~Gv 284 (311)
+.+.-+|.-. .+...|-..+...+..+.++++.-.+
T Consensus 189 ~a~~~~P~l~~~~~~~T~~~P~~~l~~~~~~~e~~~gVl~v 229 (292)
T PF07364_consen 189 MALRRLPMLLPGENQTTDDEPMKSLYARARELEARPGVLDV 229 (292)
T ss_dssp EEEEEE-B--BS----SSSSHHHHHHHHHHHHHTSTT--EE
T ss_pred EEEecCCeEcccCCCCCCcHHHHHHHHHHHHHhcCCCeEEE
Confidence 5555555443 22223336667777777666544333
No 189
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=20.67 E-value=4.9e+02 Score=21.50 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=45.8
Q ss_pred HHHHHHHhhCCCcEEEEE-ECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCC-ChhhHHHHHH
Q 021511 98 SQVSAIKNRHSNVKVALS-LGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQA-DPNTFAECIG 175 (311)
Q Consensus 98 ~~i~~lk~~~~g~kvlls-iGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~-d~~~~~~~l~ 175 (311)
+.+..+++ .|+++.+. +|....+ . +.+....+|+|-||.+.... ..+....+++
T Consensus 138 ~~l~~l~~--~G~~i~ld~~g~~~~~------------------~----~~l~~l~~~~ikld~~~~~~~~~~~~~~~l~ 193 (236)
T PF00563_consen 138 ENLRRLRS--LGFRIALDDFGSGSSS------------------L----EYLASLPPDYIKLDGSLVRDLSDEEAQSLLQ 193 (236)
T ss_dssp HHHHHHHH--CT-EEEEEEETSTCGC------------------H----HHHHHHCGSEEEEEHHGHTTTTSHHHHHHHH
T ss_pred HHHHHHHh--cCceeEeeeccCCcch------------------h----hhhhhcccccceeecccccccchhhHHHHHH
Confidence 56666776 68888765 3322111 0 45777889999999887631 1567778888
Q ss_pred HHHHHHhhCCCeEEEE
Q 021511 176 RLIKTLKKNGAISFAS 191 (311)
Q Consensus 176 ~Lr~~l~~~~~~~~a~ 191 (311)
.+....++.+..+++.
T Consensus 194 ~l~~~~~~~~~~via~ 209 (236)
T PF00563_consen 194 SLINLAKSLGIKVIAE 209 (236)
T ss_dssp HHHHHHHHTT-EEEEE
T ss_pred HHHHHhhcccccccee
Confidence 8888888877777664
No 190
>PRK09505 malS alpha-amylase; Reviewed
Probab=20.48 E-value=1.3e+02 Score=30.70 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeec
Q 021511 135 TWVSNAVASLTSIIKEYNLDGIDIDY 160 (311)
Q Consensus 135 ~~~~~~i~si~~~~~~~g~DGiDiD~ 160 (311)
+.++.+++.+..+++++|+||+-||-
T Consensus 437 ~Vr~yL~~~ik~Wv~e~GIDGfRlDa 462 (683)
T PRK09505 437 TPRDYLTHWLSQWVRDYGIDGFRVDT 462 (683)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 55666777777888899999999994
No 191
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=20.43 E-value=1.3e+02 Score=20.76 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=17.5
Q ss_pred CHHHHHHHHhhCCCcEEE--EEECCCCCC
Q 021511 96 SPSQVSAIKNRHSNVKVA--LSLGGDSVS 122 (311)
Q Consensus 96 ~~~~i~~lk~~~~g~kvl--lsiGG~~~~ 122 (311)
..+.|..||+ .|.||+ +|+|-+...
T Consensus 38 ~~~~I~~L~~--~G~~vicY~s~Gs~E~~ 64 (74)
T PF03537_consen 38 SKEEIARLKA--QGKKVICYFSIGSAEDW 64 (74)
T ss_dssp -HHHHHHHHH--TT-EEEEEEESSEEETT
T ss_pred CHHHHHHHHH--CCCEEEEEEeCceecCC
Confidence 3788999998 578876 788865443
No 192
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=20.33 E-value=5.5e+02 Score=21.91 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=30.4
Q ss_pred CCcEEEEEECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcC-CCeEEeecCCC
Q 021511 108 SNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN-LDGIDIDYEHF 163 (311)
Q Consensus 108 ~g~kvllsiGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g-~DGiDiD~E~~ 163 (311)
.|+||+.+||..-... .+.+. .+-...++..+.++-+ .++|+|-||..
T Consensus 118 eGl~ViaCIGE~leeR------EaG~t--~dVv~~Ql~aiad~v~~w~niviAYEPV 166 (247)
T KOG1643|consen 118 EGLKVIACIGETLEER------EAGKT--LDVVFRQLKAIADKVKDWSNIVIAYEPV 166 (247)
T ss_pred cCCeEEEEecccHHhh------hcCch--HHHHHHHHHHHHHhcCCccceEEEeece
Confidence 6999999999643221 01111 1123455666776665 99999999975
No 193
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=20.14 E-value=3.7e+02 Score=25.00 Aligned_cols=51 Identities=14% Similarity=0.233 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEeecCCC-CCChhhHHHHHHHHHHHHhhCCCeEE
Q 021511 136 WVSNAVASLTSIIKEYNLDGIDIDYEHF-QADPNTFAECIGRLIKTLKKNGAISF 189 (311)
Q Consensus 136 ~~~~~i~si~~~~~~~g~DGiDiD~E~~-~~d~~~~~~~l~~Lr~~l~~~~~~~~ 189 (311)
+.+++.+...+.+++ =||.+||+.. ....+.+..+++++-.+|..+|++.-
T Consensus 84 ~~~~~~~~~~~~~~~---lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 135 (382)
T cd00817 84 WKEESGGKIREQLKR---LGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYR 135 (382)
T ss_pred HHHHHHHHHHHHHHH---hCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 344455555555555 3777888765 34457899999999999988887554
No 194
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=20.04 E-value=4.4e+02 Score=25.94 Aligned_cols=45 Identities=11% Similarity=0.233 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCCeEEeecC-CCC-----------------CChhhHHHHHHHHHHHHhh
Q 021511 139 NAVASLTSIIKEYNLDGIDIDYE-HFQ-----------------ADPNTFAECIGRLIKTLKK 183 (311)
Q Consensus 139 ~~i~si~~~~~~~g~DGiDiD~E-~~~-----------------~d~~~~~~~l~~Lr~~l~~ 183 (311)
+.+..+++++.+.|+||+-||-- +.. .+.+....|++++|+.++.
T Consensus 173 ~~i~~~~~~W~~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 235 (543)
T TIGR02403 173 EELKDVVNFWRDKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFG 235 (543)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhc
Confidence 34445566666789999999932 110 1234467899999988865
Done!