BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021513
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 273 bits (699), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 142/294 (48%), Positives = 179/294 (60%), Gaps = 13/294 (4%)
Query: 24 TTKFRKRPPLRRGRVSPRLPVPDHIPKPPYVS-----STSLPDLSPEYQIH--DSESIAK 76
T K R PL P PVP +I +P Y S S L QI SE I
Sbjct: 5 TGKLRPHYPL-----MPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEG 59
Query: 77 MRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVN 136
MR C LA VLD A +++P VTT EID AVH I YPSPL Y FPKS CTSVN
Sbjct: 60 MRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVN 119
Query: 137 ECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEK 196
E +CHGIPD R LQ+GDI+N+D+T+Y NGYHGD ++TF G V DG ++LV+ T ECL +
Sbjct: 120 EVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQ 179
Query: 197 GIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH-NRNENPGCM 255
I K G ++++G I +HA+ GF VV + GHG+ K+FH+ P + H +N+ G M
Sbjct: 180 AIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVM 239
Query: 256 VEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 309
G FTIEP++ G + TWPD WT +T DG +AQFEHT+L+T TG EILT
Sbjct: 240 KSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILT 293
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 273 bits (698), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/300 (47%), Positives = 181/300 (60%), Gaps = 13/300 (4%)
Query: 18 ERELQTTTKFRKRPPLRRGRVSPRLPVPDHIPKPPYVS-----STSLPDLSPEYQIH--D 70
E + T K R PL P PVP +I +P Y S S L QI
Sbjct: 23 EDPYRYTGKLRPHYPL-----MPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLS 77
Query: 71 SESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKS 130
SE I MR C LA VLD A +++P VTT EID AVH I YPSPL Y FPKS
Sbjct: 78 SEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKS 137
Query: 131 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVT 190
CTSVNE +CHGIPD R LQ+GDI+N+D+T+Y NGYHGD ++TF G V DG ++LV+ T
Sbjct: 138 CCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTT 197
Query: 191 EECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH-NRN 249
ECL + I K G ++++G I +HA+ GF VV + GHG+ K+FH+ P + H +N
Sbjct: 198 YECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKN 257
Query: 250 ENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 309
+ G M G FTIEP++ G + TWPD WT +T DG +AQFEHT+L+T TG EILT
Sbjct: 258 KAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILT 317
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 142/294 (48%), Positives = 179/294 (60%), Gaps = 13/294 (4%)
Query: 24 TTKFRKRPPLRRGRVSPRLPVPDHIPKPPYVS-----STSLPDLSPEYQIH--DSESIAK 76
T K R PL P PVP +I +P Y S S L QI SE I
Sbjct: 4 TGKLRPHYPL-----MPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEG 58
Query: 77 MRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVN 136
MR C LA VLD A +++P VTT EID AVH I YPSPL Y FPKS CTSVN
Sbjct: 59 MRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVN 118
Query: 137 ECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEK 196
E +CHGIPD R LQ+GDI+N+D+T+Y NGYHGD ++TF G V DG ++LV+ T ECL +
Sbjct: 119 EVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQ 178
Query: 197 GIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH-NRNENPGCM 255
I K G ++++G I +HA+ GF VV + GHG+ K+FH+ P + H +N+ G M
Sbjct: 179 AIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVM 238
Query: 256 VEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 309
G FTIEP++ G + TWPD WT +T DG +AQFEHT+L+T TG EILT
Sbjct: 239 KSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILT 292
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 268 bits (684), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 131/295 (44%), Positives = 185/295 (62%), Gaps = 17/295 (5%)
Query: 32 PLRRGRVSPRLPVPDHIPKPPY------VSSTSLPDLSPEYQIHD----------SESIA 75
PLR G+++PR VP HI +P Y VS++ D + ++++ + I
Sbjct: 11 PLRPGKITPRRAVPSHILRPDYADRAGGVSASEEKDRGSKVKVYNIQFLHDDSKKTAEIQ 70
Query: 76 KMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSV 135
+++ C+L+ VLD A +P +TT+E+D+ VH+ +E YPSPL Y GFPKSVCTSV
Sbjct: 71 RIKTVCQLSREVLDIATAAAKPGITTDELDRIVHEATVERNMYPSPLNYYGFPKSVCTSV 130
Query: 136 NECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLE 195
NE +CHGIPDSR+L++GDI+NIDV+ YLNG+HGD ++T G D RLV ECL
Sbjct: 131 NEVICHGIPDSRELEEGDILNIDVSSYLNGFHGDLNETVFIGRPDDDSVRLVHAAYECLC 190
Query: 196 KGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH-NRNENPGC 254
GI V K A +K++G I A +Y VV + GHGVG +FH+ P + H N++ G
Sbjct: 191 AGIGVVKPEALYKQVGDAIEACASQYQCSVVRTYTGHGVGHLFHTSPTVCHYANNKSLGM 250
Query: 255 MVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 309
M G FTIEP++ +G+ + +TWPD WT+ T DG +AQFEHT+++T G EI T
Sbjct: 251 MRPGHVFTIEPMINLGTWQDVTWPDKWTSTTKDGRRSAQFEHTMVVTNGGVEIFT 305
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 256 bits (654), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 175/282 (62%), Gaps = 2/282 (0%)
Query: 29 KRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQIHDSESIAKMRAACELAARVL 88
R L G +SP PVP+ I +P YV + + S E + E I KMR A +AA L
Sbjct: 6 SRTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGS-EPWVQTPEVIEKMRVAGRIAAGAL 64
Query: 89 DAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQ 148
AGK V P VTT+E+D+ H+ +++ GAYPS LGY GFPKS CTS+NE +CHGIPDS
Sbjct: 65 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 124
Query: 149 LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFK 208
+ DGDI+NIDVT Y+ G HGDT+ TF G+V+D + LV T E + I K G +
Sbjct: 125 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 184
Query: 209 KIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH-NRNENPGCMVEGQTFTIEPIL 267
IG+ I +A ++G+ VV F GHG+G FH+ ++ H ++ M G TFTIEP++
Sbjct: 185 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMI 244
Query: 268 TMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 309
+G+++ W D WT +T D AQFEHT+L+T TG EILT
Sbjct: 245 NLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 286
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 175/282 (62%), Gaps = 2/282 (0%)
Query: 29 KRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQIHDSESIAKMRAACELAARVL 88
R L G +SP PVP+ I +P YV + + S E + E I KMR A +AA L
Sbjct: 9 SRTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGS-EPWVQTPEVIEKMRVAGRIAAGAL 67
Query: 89 DAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQ 148
AGK V P VTT+E+D+ H+ +++ GAYPS LGY GFPKS CTS+NE +CHGIPDS
Sbjct: 68 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 127
Query: 149 LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFK 208
+ DGDI+NIDVT Y+ G HGDT+ TF G+V+D + LV T E + I K G +
Sbjct: 128 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 187
Query: 209 KIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH-NRNENPGCMVEGQTFTIEPIL 267
IG+ I +A ++G+ VV F GHG+G FH+ ++ H ++ M G TFTIEP++
Sbjct: 188 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMI 247
Query: 268 TMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 309
+G+++ W D WT +T D AQFEHT+L+T TG EILT
Sbjct: 248 NLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 289
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 175/282 (62%), Gaps = 2/282 (0%)
Query: 29 KRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQIHDSESIAKMRAACELAARVL 88
R L G +SP PVP+ I +P YV + + S E + E I KMR A +AA L
Sbjct: 3 SRTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGS-EPWVQTPEVIEKMRVAGRIAAGAL 61
Query: 89 DAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQ 148
AGK V P VTT+E+D+ H+ +++ GAYPS LGY GFPKS CTS+NE +CHGIPDS
Sbjct: 62 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 121
Query: 149 LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFK 208
+ DGDI+NIDVT Y+ G HGDT+ TF G+V+D + LV T E + I K G +
Sbjct: 122 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 181
Query: 209 KIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH-NRNENPGCMVEGQTFTIEPIL 267
IG+ I +A ++G+ VV F GHG+G FH+ ++ H ++ M G TFTIEP++
Sbjct: 182 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMI 241
Query: 268 TMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 309
+G+++ W D WT +T D AQFEHT+L+T TG EILT
Sbjct: 242 NLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 283
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 253 bits (647), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 134/307 (43%), Positives = 182/307 (59%), Gaps = 11/307 (3%)
Query: 13 QILVRERELQTTTKFRKRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQ----- 67
+ V + L+ F+ +R +S VP HI +P Y S S+P+ Y+
Sbjct: 43 KYWVYDDHLKNFVNFKFTGDVRPWPLSKINHVPSHIERPDYAIS-SIPESELIYKRKSDI 101
Query: 68 -IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGG 126
+++ E I ++R AC L + LD A LV P VTT+EID+ VH+ II+ AYPS L Y
Sbjct: 102 YVNNEEEIQRIREACILGRKTLDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYK 161
Query: 127 FPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRL 186
FPKS CTSVNE +CHGIPD R L+ GDIINID++V+ G H D ++T+ G+++D K
Sbjct: 162 FPKSCCTSVNEIVCHGIPDYRPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEG 221
Query: 187 VKVTEEC---LEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPI 243
++ E C L + I CK G +K IG I + K F VV + GHGVGK+FHS P
Sbjct: 222 KELVETCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSKKNFSVVRSYSGHGVGKLFHSNPT 281
Query: 244 IYH-NRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITR 302
+ H +N+ G M G FTIEP++ G + WPD WT+ T+DG +AQFEHT+LIT
Sbjct: 282 VPHFKKNKAVGIMKPGHVFTIEPMINQGHYSDVLWPDQWTSATSDGKLSAQFEHTLLITN 341
Query: 303 TGAEILT 309
G EILT
Sbjct: 342 NGVEILT 348
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 253 bits (645), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 174/282 (61%), Gaps = 2/282 (0%)
Query: 29 KRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQIHDSESIAKMRAACELAARVL 88
R L G +SP PVP+ I +P YV + + S E + E I KMR A +AA L
Sbjct: 9 SRTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGS-EPWVQTPEVIEKMRVAGRIAAGAL 67
Query: 89 DAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQ 148
AGK V P VTT+E+D+ H+ +++ GAYPS LGY GFPKS TS+NE +CHGIPDS
Sbjct: 68 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCSTSLNEVICHGIPDSTV 127
Query: 149 LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFK 208
+ DGDI+NIDVT Y+ G HGDT+ TF G+V+D + LV T E + I K G +
Sbjct: 128 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 187
Query: 209 KIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH-NRNENPGCMVEGQTFTIEPIL 267
IG+ I +A ++G+ VV F GHG+G FH+ ++ H ++ M G TFTIEP++
Sbjct: 188 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMI 247
Query: 268 TMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 309
+G+++ W D WT +T D AQFEHT+L+T TG EILT
Sbjct: 248 NLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 289
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 161/247 (65%), Gaps = 2/247 (0%)
Query: 67 QIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGG 126
+IH + KMRAA +LAA LD V+P+VTTN ++ H I A P+PL Y G
Sbjct: 7 KIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKG 66
Query: 127 FPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRL 186
FPKS+CTS+N +CHGIP+ + L++GDI+NIDVTV L+G++GDTS+ + G+V+ KRL
Sbjct: 67 FPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRL 126
Query: 187 VKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIY 245
++VT + + KGI V + GA IG I +AEK+ + VV + GHG+G+VFH +P I+
Sbjct: 127 IQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILN 186
Query: 246 HNRNENPGCMVEGQTFTIEPILTMGSIECI-TWPDNWTTLTADGNPAAQFEHTILITRTG 304
+ RN + EG FT+EP++ G+ + I + D WT T D + +AQFEHTI +T+ G
Sbjct: 187 YGRNGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKDG 246
Query: 305 AEILTIC 311
EI T+
Sbjct: 247 FEIFTLS 253
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 228 bits (582), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 112/246 (45%), Positives = 161/246 (65%), Gaps = 2/246 (0%)
Query: 67 QIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGG 126
+IH + KMRAA +LAA LD V+P+VTTN ++ H I A P+PL Y G
Sbjct: 7 KIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKG 66
Query: 127 FPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRL 186
FPKS+CTS+N +CHGIP+ + L++GDI+NIDVTV L+G++GDTS+ + G+V+ KRL
Sbjct: 67 FPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRL 126
Query: 187 VKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIY 245
++VT + + KGI V + GA IG I +AEK+ + VV + GHG+G+VFH +P I+
Sbjct: 127 IQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILN 186
Query: 246 HNRNENPGCMVEGQTFTIEPILTMGSIECI-TWPDNWTTLTADGNPAAQFEHTILITRTG 304
+ RN + EG FT+EP++ G+ + I + D WT T D + +AQFEHTI +T+ G
Sbjct: 187 YGRNGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKDG 246
Query: 305 AEILTI 310
EI T+
Sbjct: 247 FEIFTL 252
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 210 bits (534), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 130
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 8 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 67
Query: 131 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 189
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 68 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 127
Query: 190 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 248
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 128 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 187
Query: 249 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 308
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 188 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 247
Query: 309 TI 310
T+
Sbjct: 248 TL 249
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 210 bits (534), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 130
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 9 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 68
Query: 131 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 189
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 69 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 128
Query: 190 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 248
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 129 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDS 188
Query: 249 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 308
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 189 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 248
Query: 309 TI 310
T+
Sbjct: 249 TL 250
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 130
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 6 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 65
Query: 131 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 189
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 66 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 125
Query: 190 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 248
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 126 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 185
Query: 249 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 308
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 186 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 245
Query: 309 TI 310
T+
Sbjct: 246 TL 247
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 130
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 9 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 68
Query: 131 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 189
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 69 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 128
Query: 190 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 248
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 129 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 188
Query: 249 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 308
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 189 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 248
Query: 309 TI 310
T+
Sbjct: 249 TL 250
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 130
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 9 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 68
Query: 131 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 189
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 69 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 128
Query: 190 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 248
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 129 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 188
Query: 249 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 308
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 189 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 248
Query: 309 TI 310
T+
Sbjct: 249 TL 250
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 130
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 8 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 67
Query: 131 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 189
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 68 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 127
Query: 190 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 248
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 128 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 187
Query: 249 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 308
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 188 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 247
Query: 309 TI 310
T+
Sbjct: 248 TL 249
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 130
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 8 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 67
Query: 131 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 189
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 68 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 127
Query: 190 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 248
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 128 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 187
Query: 249 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 308
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 188 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 247
Query: 309 TI 310
T+
Sbjct: 248 TL 249
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 130
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 8 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 67
Query: 131 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 189
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 68 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 127
Query: 190 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 248
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 128 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 187
Query: 249 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 308
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 188 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 247
Query: 309 TI 310
T+
Sbjct: 248 TL 249
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 130
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 8 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 67
Query: 131 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 189
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 68 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 127
Query: 190 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 248
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 128 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDS 187
Query: 249 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 308
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 188 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 247
Query: 309 TI 310
T+
Sbjct: 248 TL 249
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 130
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 9 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 68
Query: 131 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 189
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 69 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 128
Query: 190 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 248
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 129 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDS 188
Query: 249 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 308
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 189 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 248
Query: 309 TI 310
T+
Sbjct: 249 TL 250
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 130
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 9 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 68
Query: 131 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 189
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 69 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 128
Query: 190 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 248
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 129 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDS 188
Query: 249 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 308
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 189 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 248
Query: 309 TI 310
T+
Sbjct: 249 TL 250
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 134/243 (55%), Gaps = 8/243 (3%)
Query: 76 KMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSV 135
M AA + L A + V+T E+D+ +I EAGA PS LGY GFP S+C+SV
Sbjct: 42 AMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYHGFPASICSSV 101
Query: 136 NECMCHGIPDSRQ-LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECL 194
N+ + HGIP + L DGD+++ID L+G+HGD++ TF G V + L + T +
Sbjct: 102 NDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDEALSEATRLSM 161
Query: 195 EKGIAVCKDGASFK------KIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYHNR 248
E GIA G ++G R +E FG+V+ + GHG+G+ H +P + +
Sbjct: 162 EAGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRAFGIVDGYGGHGIGRSMHLDPFLPNEG 221
Query: 249 NENPGCMVE-GQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEI 307
G ++ G IEP+LT+G+ + D+WT +T DG+ AA +EHT+ +T G I
Sbjct: 222 APGKGPLLAVGSVLAIEPMLTLGTTQTRVLADDWTVVTTDGSRAAHWEHTVAVTEAGPRI 281
Query: 308 LTI 310
LT+
Sbjct: 282 LTM 284
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 133/245 (54%), Gaps = 2/245 (0%)
Query: 67 QIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGG 126
+I I KM+ A + A L K++ P T +++ V ++ + P+ GYGG
Sbjct: 15 RIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGG 74
Query: 127 FPKSVCTSVNECMCHGIP-DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKR 185
+ + C SVNE + HG+P + ++GDI+++DV G +GD + T++ G + K
Sbjct: 75 YKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKE 134
Query: 186 LVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIY 245
LV+VT E LEK I + K G + I E E GF V+ +VGHGVG+ H +P I
Sbjct: 135 LVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQIP 194
Query: 246 HNRNENPGCMV-EGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTG 304
+ G ++ +G T IEP+++ G + D WT +T DG+ A FEHTILIT G
Sbjct: 195 NYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTILITENG 254
Query: 305 AEILT 309
AEILT
Sbjct: 255 AEILT 259
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 126/237 (53%), Gaps = 1/237 (0%)
Query: 74 IAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCT 133
I M + EL A V ++P +T+ +I+ V I G + +GY G+ + C
Sbjct: 10 IEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYEGYKYATCC 69
Query: 134 SVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEEC 193
S+N+ +CHG P + L+DGD+I +D+ V L G D+ +++ G + + RL++VT++
Sbjct: 70 SINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLMEVTKKA 129
Query: 194 LEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYHNRNENPG 253
L GI + G IG I + E G+GVV FVGHG+G H P+I H G
Sbjct: 130 LYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMIPHYGEAGKG 189
Query: 254 C-MVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 309
+ EG TIEP++ G+ P+ WT T DG + Q+EH++ IT+ G ILT
Sbjct: 190 LRLKEGMVITIEPMVNTGTWRMKMDPNGWTAYTEDGGLSCQYEHSLAITKEGPRILT 246
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 119/240 (49%), Gaps = 3/240 (1%)
Query: 68 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 127
+ E + ++ + A+V + +P +TT E+D ++ E GA +P+ F
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 128 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV 187
P C SVNE + HGIP R +++GD++NIDV+ NGY+ DT +F+ G D +K+ V
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 188 -KVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP--II 244
V E IA K G IGK + A + V++ GHGVG H P ++
Sbjct: 123 CDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVL 182
Query: 245 YHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTG 304
+ ++ + EG IEP ++ + + W T+D + AQ EHT+++T+ G
Sbjct: 183 NYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDG 242
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 20/242 (8%)
Query: 76 KMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSV 135
K+ A E+A +V + A KL RP + E+ +++ +MI+E G P+ FP V S+
Sbjct: 5 KLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLSI 56
Query: 136 NECMCHGIP---DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEE 192
NE H P D+ L++GD + IDV V+++G+ DT+ T G D L++ +E
Sbjct: 57 NEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEED---ELMEAAKE 113
Query: 193 CLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKV-FH---SEPIIYHNR 248
L I+V + G K++GK I K GF + GH + + H S P IY R
Sbjct: 114 ALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIY--R 171
Query: 249 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 308
+ + EG F IEP T+G+ + I P + P + L+ + E
Sbjct: 172 PHDNYVLKEGDVFAIEPFATIGAGQVIEVPPTLIYMYVRDVPVRVAQARFLLAKIKREYG 231
Query: 309 TI 310
T+
Sbjct: 232 TL 233
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 20/242 (8%)
Query: 76 KMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSV 135
K+ A E+A +V + A KL RP + E+ +++ +MI+E G P+ FP V S+
Sbjct: 5 KLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLSI 56
Query: 136 NECMCHGIP---DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEE 192
NE H P D+ L++GD + IDV V+++G+ DT+ T G D L++ +E
Sbjct: 57 NEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEED---ELMEAAKE 113
Query: 193 CLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKV-FH---SEPIIYHNR 248
L I+V + G K++GK I K GF + GH + + H S P IY R
Sbjct: 114 ALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIY--R 171
Query: 249 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 308
+ + EG F IEP T+G+ + I P + P + L+ + E
Sbjct: 172 PHDNYVLKEGDVFAIEPFATIGAGQVIEVPPTLIYMYVRDVPVRVAQARFLLAKIKREYG 231
Query: 309 TI 310
T+
Sbjct: 232 TL 233
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 30/245 (12%)
Query: 68 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 127
I E I + ACE+A + + AA + + E+ V ++ GA P F
Sbjct: 124 IKTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGA-EKP----AF 178
Query: 128 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV 187
+ + + HG+ ++++ GD++ ID+ N Y+ D ++T + G+ ++ + +
Sbjct: 179 DTIIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIY 238
Query: 188 KVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGKVFHSEPII 244
++ E ++ + K G + K++ E ++YG+G + F+ GHGVG H P I
Sbjct: 239 EIVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYG--DYFIHSLGHGVGLEIHEWPRI 296
Query: 245 YHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTG 304
+ + EG TIEP + + + + E T+LIT G
Sbjct: 297 SQY---DETVLKEGMVITIEPGIYIPKL-----------------GGVRIEDTVLITENG 336
Query: 305 AEILT 309
A+ LT
Sbjct: 337 AKRLT 341
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 19/225 (8%)
Query: 70 DSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPK 129
DSE I ++ A ++A + +RP V+ E+ + + + GA S F
Sbjct: 133 DSE-IKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSS-----FDI 186
Query: 130 SVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 189
V + + + HG+ + ++ GD + +D Y GY D ++T G SD LK + +
Sbjct: 187 IVASGLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEIYNI 246
Query: 190 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERF---VGHGVGKVFHSEPIIYH 246
E +G+ K G + ++ ++ + G+G E F GHG+G H P +
Sbjct: 247 VLEAQLRGVNGIKAGLTGREADALTRDYITEKGYG--EYFGHSTGHGIGLEIHEAPGLAF 304
Query: 247 NRNE--NPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGN 289
+ PG V T+EP + + I + D+ +T++GN
Sbjct: 305 RSDTVLEPGMAV-----TVEPGIYIPGIGGVRIEDD-IIVTSEGN 343
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 107/245 (43%), Gaps = 30/245 (12%)
Query: 68 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 127
I + I + ACE+A + + AA + + E+ V ++ GA P F
Sbjct: 127 IKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKVEYLMKMNGA-EKP----AF 181
Query: 128 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV 187
+ + + HG+ ++++ GD++ ID+ Y+ D ++T + G+ ++ K +
Sbjct: 182 DTIIASGYRSALPHGVASDKRIERGDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIY 241
Query: 188 KVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERF---VGHGVGKVFHSEPII 244
++ E +K + K G + K++ +YG+G E F +GHGVG H P +
Sbjct: 242 EIVLEAQKKAVESAKPGITAKELDSIARNIIAEYGYG--EYFNHSLGHGVGLEVHEWPRV 299
Query: 245 YHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTG 304
+ + EG TIEP + + I + + E TILIT+ G
Sbjct: 300 SQY---DETVLREGMVITIEPGIYIPKIGGV-----------------RIEDTILITKNG 339
Query: 305 AEILT 309
++ LT
Sbjct: 340 SKRLT 344
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 98/237 (41%), Gaps = 16/237 (6%)
Query: 68 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYG-G 126
I D E + M A +A +V + +T + I ++ ++ L G
Sbjct: 131 IKDKEEVKMMEHASRIADKVFEEI-------LTWDLIGMKERELALKIELLIRELSDGIA 183
Query: 127 FPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRL 186
F V + N H P R+++ GDII +D GY D ++T G + + L ++
Sbjct: 184 FEPIVASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDERLVKI 243
Query: 187 VKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGKVFHSEPI 243
+V ++ E ++G K + R E K G+G E F+ GHG+G H EP
Sbjct: 244 YEVVKDAQESAFKAVREGIKAKDVDSRAREVISKAGYG--EYFIHRTGHGLGLDVHEEPY 301
Query: 244 IYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILI 300
I + + G TFTIEP + + + + D+ G + E ++I
Sbjct: 302 I---GPDGEVILKNGMTFTIEPGIYVPGLGGVRIEDDIVVDEGKGRRLTKAERELII 355
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 101/245 (41%), Gaps = 30/245 (12%)
Query: 68 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 127
+ D I K++ A E++ R + +R +T EI + + + GA F
Sbjct: 133 VKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKEGAEGVA-----F 187
Query: 128 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV 187
V + + HG + ++ GD+I ID Y D ++ G SD +K +
Sbjct: 188 DTIVASGCRSALPHGKASDKVVERGDVIVIDFGATYENYCADITRVVSIGEPSDEVKEVH 247
Query: 188 KVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERF---VGHGVGKVFHSEPII 244
+ E E+ + + K G + K + E + G+G E F +GHG+G H P I
Sbjct: 248 SIVLEAQERALKIAKAGVTGKLLDSVAREFIREKGYG--EFFGHSLGHGIGLEVHEGPAI 305
Query: 245 YHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTG 304
RN++P + E FT+EP + + +G + E +++ G
Sbjct: 306 SF-RNDSP--LPENVVFTVEPGIYL-----------------EGKFGIRIEEDVVLKEQG 345
Query: 305 AEILT 309
EILT
Sbjct: 346 CEILT 350
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 27/169 (15%)
Query: 141 HGIPDSRQLQDGDIINIDVT-VYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIA 199
HG D R+LQ GDI+ +D+ Y GY+ D+++T+ G+ S + + + +
Sbjct: 218 HGYSD-RKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVD 276
Query: 200 VCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGKVFHSEPIIYHNRNENPGCMV 256
+ G + ++ + G E FV GHG+G H EP I NE P +V
Sbjct: 277 AVRPGVTAAQVDAAARDVLADAGLA--EYFVHRTGHGIGLCVHEEPYIVAG-NELP--LV 331
Query: 257 EGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGA 305
G F+IEP I +P W A+ E +++T GA
Sbjct: 332 AGMAFSIEP--------GIYFPGRW---------GARIEDIVVVTENGA 363
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 61 DLSPEYQIHD-SESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAG 116
D + Y I D S +A+ +A + A R AA VRP VT ++D A ++ +AG
Sbjct: 246 DSTRTYSIGDPSPDVAQQYSALQRAQR---AAVDAVRPGVTAAQVDAAARDVLADAG 299
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 106/257 (41%), Gaps = 27/257 (10%)
Query: 60 PDLSPEYQIHDSESIAKMRAACELAARVLD--AAGKLVRPSVTTNEIDKAVHQMII-EAG 116
P +S +I D + I + A E+ +V GKL S E+ + MI E G
Sbjct: 142 PVISELREIKDKDEIKAHKKAAEIVDKVFYRFIEGKLEGKS--ERELANRIEYMIKNEFG 199
Query: 117 AYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLC 176
A F V + N H P R+++ GD++ D GY D ++T +
Sbjct: 200 ADDV-----SFEPIVASGPNGANPHHRPSHRKIRKGDVVIFDYGAKYLGYCSDVTRTVVV 254
Query: 177 GNVSDGLKRLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHG 233
G S+ +K++ ++ +E E + +G + + KYG+G E F+ GHG
Sbjct: 255 GPPSEEVKKVYEIVKEAQETAVQKVAEGIPAEVVDATARGIISKYGYG--EYFIHRTGHG 312
Query: 234 VGKVFHSEPIIYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQ 293
+G H EP I N + +G FTIEP + + + D+ + G
Sbjct: 313 LGIDVHEEPYISPG---NKKILKDGMVFTIEPGIYLQGKFGVRIEDDVALVDKKG----- 364
Query: 294 FEHTILITRTGAEILTI 310
I +T E++T+
Sbjct: 365 ----IRLTNADRELITL 377
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 130
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 131 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 189
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 190 TEECLEKGIAVCKDGASFKKI 210
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 130
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 131 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 189
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 190 TEECLEKGIAVCKDGASFKKI 210
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 130
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 131 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 189
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 190 TEECLEKGIAVCKDGASFKKI 210
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 130
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 131 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 189
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 190 TEECLEKGIAVCKDGASFKKI 210
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 130
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 131 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 189
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 190 TEECLEKGIAVCKDGASFKKI 210
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 130
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 131 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 189
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 190 TEECLEKGIAVCKDGASFKKI 210
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 130
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 131 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 189
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 190 TEECLEKGIAVCKDGASFKKI 210
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 130
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 131 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 189
V + N C+ + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILAYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 190 TEECLEKGIAVCKDGASFKKI 210
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 130
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 131 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 189
V + N C+ H + +++DGD++ I GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENECEMRDGDLVLIAAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 190 TEECLEKGIAVCKDGASFKKI 210
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 130
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 131 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 189
V + N C+ H + +++DGD++ ID GY G ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGAITRTFPVNGKFTQAQREIYDI 292
Query: 190 TEECLEKGIAVCKDGASFKKI 210
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 72 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 130
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 131 VCTSVNECMCHGIPDS-RQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVK 188
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + +
Sbjct: 233 VGSGENGCILHYTENECXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYD 292
Query: 189 VTEECLEKGIAVCKDGASFKKI 210
+ E LE + + + G S ++
Sbjct: 293 IVLESLETSLRLYRPGTSILEV 314
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 126 GFPKSVCTSVNECMCHGIP-DSRQ---LQDGDIINIDVTVYLNGYHGDTSKTFLCG---- 177
FP S+ SVN C+CH P S Q L++GD++ ID+ V+++G+ + + TF+ G
Sbjct: 68 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIGVAQG 125
Query: 178 -NVSDGLKRLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGK 236
V+ ++K C E + + K G ++ + ++ A + +E + H + +
Sbjct: 126 TQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQ 185
Query: 237 -VFHSEPIIYHN 247
V E I N
Sbjct: 186 HVIDGEKTIIQN 197
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 126 GFPKSVCTSVNECMCHGIP-DSRQ---LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSD 181
FP S+ SVN C+CH P S Q L++GD++ ID+ V+++G+ + + TF+ +V+
Sbjct: 75 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVV-DVAQ 131
Query: 182 GLK------RLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVG 235
G + ++K C E + + K G ++ + ++ A + +E + H +
Sbjct: 132 GTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLK 191
Query: 236 K-VFHSEPIIYHN 247
+ V E I N
Sbjct: 192 QHVIDGEKTIIQN 204
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 126 GFPKSVCTSVNECMCHGIP-DSRQ---LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSD 181
FP S+ SVN C+CH P S Q L++GD++ ID+ V+++G+ + + TF+ +V+
Sbjct: 82 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVV-DVAQ 138
Query: 182 GLK------RLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVG 235
G + ++K C E + + K G ++ + ++ A + +E + H +
Sbjct: 139 GTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLK 198
Query: 236 K-VFHSEPIIYHN 247
+ V E I N
Sbjct: 199 QHVIDGEKTIIQN 211
>pdb|1CHM|A Chain A, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 18/181 (9%)
Query: 133 TSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEE 192
+ +N H +R++ GDI++++ + GY+ +T + SD RL +V E
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 193 CLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERF-VGHGVGKVFHSEPIIYHNRNEN 251
E G+ + K GA I + ++E K+ F GH G + H Y+ R E
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSH-----YYGR-EA 336
Query: 252 PGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAA--QFEHTILI-TRTGAEIL 308
+ E +EP + + I P +G P A EH ILI GAE +
Sbjct: 337 GLELREDIDTVLEPGMVVSMEPMIMLP--------EGLPGAGGYREHDILIVNENGAENI 388
Query: 309 T 309
T
Sbjct: 389 T 389
>pdb|1CHM|B Chain B, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 18/181 (9%)
Query: 133 TSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEE 192
+ +N H +R++ GDI++++ + GY+ +T + SD RL +V E
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 193 CLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERF-VGHGVGKVFHSEPIIYHNRNEN 251
E G+ + K GA I + ++E K+ F GH G + H Y+ R E
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSH-----YYGR-EA 336
Query: 252 PGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAA--QFEHTILI-TRTGAEIL 308
+ E +EP + + I P +G P A EH ILI GAE +
Sbjct: 337 GLELREDIDTVLEPGMVVSMEPMIMLP--------EGLPGAGGYREHDILIVNENGAENI 388
Query: 309 T 309
T
Sbjct: 389 T 389
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 49/210 (23%)
Query: 120 SPLGYGGFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGN 178
S + + F + + N + H + Q+Q+GD++ +D+ + Y+ D S TF G
Sbjct: 218 SGIKHHAFNTILASGKNATVLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGT 277
Query: 179 VSDGLKRLVKVTEECLEKGIAVCKDGASFKKIGKR--------------ISEHAE--KYG 222
S K++ + L++ + K G F + + I E E KY
Sbjct: 278 FSSRQKQIYNIVLNALKETTEIIKPGLKFAALNEHAKKVLAEGCKAVGLIQEDEELSKYY 337
Query: 223 FGVVERFVG---HGVGKVFHSEPIIYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPD 279
+ V F+G H VG Y +R + EG TIEP L + E I
Sbjct: 338 YHGVSHFLGLDTHDVG--------TYKDR-----VLEEGXVITIEPGLYIEE-ESI---- 379
Query: 280 NWTTLTADGNPAAQFEHTILITRTGAEILT 309
+ E IL+T+ G E L+
Sbjct: 380 -----------GIRIEDDILVTKDGHENLS 398
>pdb|1KP0|A Chain A, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
pdb|1KP0|B Chain B, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
Length = 402
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 17/173 (9%)
Query: 133 TSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEE 192
+ +N H R + GDI++++ + GY+ +T V D +
Sbjct: 223 SGINTDGAHNPVTXRVVXRGDILSLNCFPMIFGYYTALERTLFLXXVXDASLXIWXKNTA 282
Query: 193 CLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYHNRNENP 252
+G+ + K GA K I SE Y + R+ G G HS ++ H
Sbjct: 283 VHRRGLXLIKPGARCKDIA---SELNXMYRXWDLLRYRTFGYG---HSFGVLXHYYGREA 336
Query: 253 GCMVEGQTFTI-EPILTMGSIECITWPDNWTTLTADGNPAA--QFEHTILITR 302
G + T+ EP + + S+E + + +G P A EH IL+ +
Sbjct: 337 GVELREDIXTVLEPGMVV-SMEPM-------VMXPEGEPGAGGYREHDILVIK 381
>pdb|3FM3|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FM3|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FMQ|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMQ|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMR|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
pdb|3FMR|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
Length = 358
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 255 MVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 309
+V+G + +LTM + P N DG AQFEHT+ ++ G E+LT
Sbjct: 303 LVKGGSLKSVNLLTMMGLLTPYPPLN----DIDGCKVAQFEHTVYLSEHGKEVLT 353
>pdb|3VTI|C Chain C, Crystal Structure Of Hype-Hypf Complex
pdb|3VTI|D Chain D, Crystal Structure Of Hype-Hypf Complex
Length = 314
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 147 RQLQDGDIINIDVTVYLNGY--------HGDTSKTFLCGNVSD----GLKRLVKVTEECL 194
R ++D ++ ++T+ + + GD K +CG V+D G K L +
Sbjct: 18 RAMEDAALLFGNITLTTDSFTVKPLFFPGGDIGKLAVCGTVNDASMRGAKPLFLTAAFII 77
Query: 195 EKGIAVCKDGASFKKIGKRISEHAEKYGFGVV 226
E+G V KKI K ++E A++ G +V
Sbjct: 78 EEGFPV----EDLKKIVKSMAEAAKEAGVKIV 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,908,278
Number of Sequences: 62578
Number of extensions: 424993
Number of successful extensions: 1235
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1074
Number of HSP's gapped (non-prelim): 62
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)