BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>021514
MATFSFCSNFPSPTSSLSKFGSSKPLIIFPSNGTHNRLSSSIHSPPTSIFCSATKGPSSD
NIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVID
ESGEEEASEMPEIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLG
GTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGS
GYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGMMMA
SEHDPRIDPFD

High Scoring Gene Products

Symbol, full name Information P value
AT5G06130 protein from Arabidopsis thaliana 1.1e-92
AT5G61670 protein from Arabidopsis thaliana 4.8e-78
EDA3
embryo sac development arrest 3
protein from Arabidopsis thaliana 0.00022

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  021514
        (311 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2152845 - symbol:AT5G06130 species:3702 "Arabi...   923  1.1e-92   1
TAIR|locus:2151556 - symbol:AT5G61670 "AT5G61670" species...   785  4.8e-78   1
TAIR|locus:2044812 - symbol:EDA3 "embryo sac development ...   110  0.00022   1


>TAIR|locus:2152845 [details] [associations]
            symbol:AT5G06130 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] EMBL:CP002688
            EMBL:AY072147 EMBL:AY133750 IPI:IPI00527561 RefSeq:NP_196231.2
            UniGene:At.9801 ProteinModelPortal:Q8VYD8 SMR:Q8VYD8 PaxDb:Q8VYD8
            PRIDE:Q8VYD8 EnsemblPlants:AT5G06130.2 GeneID:830500
            KEGG:ath:AT5G06130 TAIR:At5g06130 eggNOG:NOG279301
            InParanoid:Q8VYD8 OMA:PCARCSA ProtClustDB:CLSN2686933
            ArrayExpress:Q8VYD8 Genevestigator:Q8VYD8 Uniprot:Q8VYD8
        Length = 315

 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 186/300 (62%), Positives = 213/300 (71%)

Query:    17 LSKFGSSKPLIIFPSNGTHNRLSSSIHSPPTSIF-CSATKG----PSSDNIPNNFSIIEG 71
             LS   +SK L+ FPS+      S   H    S+  CS        PS D +PNNF IIEG
Sbjct:    16 LSSPSTSKSLLRFPSSYLKPSPSLLFHGSSRSLLSCSDGSNNRPPPSGDTVPNNFCIIEG 75

Query:    72 PETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVXXXXXXXXXXXXX 131
              ET+QDFVQMQL+EI+DNI+ RRN+IF LMEE+RRLRVQQRIK +K              
Sbjct:    76 SETVQDFVQMQLQEIQDNIRSRRNKIFLLMEEVRRLRVQQRIKSVKAINEDSELEATEMP 135

Query:   132 XXXXXXXFLPYVTPKTLKQLYLTXXXXXXXXXXXXXXXAPTLELKLGLGGTSYEDFIRNM 191
                    FLP VTPKTLKQLY T               AP LELK+GLGGTSYEDFIR++
Sbjct:   136 EITSSIPFLPNVTPKTLKQLYSTSVALISGIIFFGGLIAPNLELKVGLGGTSYEDFIRSL 195

Query:   192 HLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSS 251
             HLP+QLSQVDPIVASFSGGAVGVIS LMLIE NNV+QQEKKRCKYC G+GYL CARCS+S
Sbjct:   196 HLPLQLSQVDPIVASFSGGAVGVISTLMLIEVNNVKQQEKKRCKYCLGTGYLPCARCSAS 255

Query:   252 GVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGMMMASEHDPRIDPFD 311
             GVCLS+DPI+   A+N  ++V TT+RC NCSGAGKVMCP+CLCTGM+ ASEHDPR DPFD
Sbjct:   256 GVCLSIDPITRPRATNQLMQVATTKRCLNCSGAGKVMCPTCLCTGMVTASEHDPRFDPFD 315


>TAIR|locus:2151556 [details] [associations]
            symbol:AT5G61670 "AT5G61670" species:3702 "Arabidopsis
            thaliana" [GO:0009536 "plastid" evidence=ISS] [GO:0009661
            "chromoplast organization" evidence=ISS] [GO:0016120 "carotene
            biosynthetic process" evidence=ISS] EMBL:CP002688
            GenomeReviews:BA000015_GR EMBL:AB012239 eggNOG:NOG279301
            ProtClustDB:CLSN2686933 EMBL:AY065401 EMBL:AY094431 EMBL:AY117226
            EMBL:AY084568 EMBL:AY149953 IPI:IPI00531772 RefSeq:NP_200975.1
            RefSeq:NP_974975.1 UniGene:At.28655 ProteinModelPortal:Q9FKF4
            STRING:Q9FKF4 PaxDb:Q9FKF4 PRIDE:Q9FKF4 EnsemblPlants:AT5G61670.1
            EnsemblPlants:AT5G61670.2 GeneID:836289 KEGG:ath:AT5G61670
            TAIR:At5g61670 HOGENOM:HOG000265745 InParanoid:Q9FKF4 OMA:INEEQEH
            PhylomeDB:Q9FKF4 ArrayExpress:Q9FKF4 Genevestigator:Q9FKF4
            Uniprot:Q9FKF4
        Length = 307

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 154/254 (60%), Positives = 181/254 (71%)

Query:    58 SSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLK 117
             S+D   + F IIEGPET+QDF +MQL+EI+DNI+ RRN+IF  MEE+RRLR+QQRIK  +
Sbjct:    55 SADKFASGFCIIEGPETVQDFAKMQLQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNTE 114

Query:   118 VXXXXXXXXXXXXXXXXXXXXFLPYVTPKTLKQLYLTXXXXXXXXXXXXXXXAPTLELKL 177
             +                    FLP +T   LK  Y T               APTLELKL
Sbjct:   115 LGIINEEQEHELPNFPSFIP-FLPPLTAANLKVYYATCFSLIAGIILFGGLLAPTLELKL 173

Query:   178 GLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYC 237
             G+GGTSY DFI+++HLPMQLSQVDPIVASFSGGAVGVISALM++E NNV+QQE KRCKYC
Sbjct:   174 GIGGTSYADFIQSLHLPMQLSQVDPIVASFSGGAVGVISALMVVEVNNVKQQEHKRCKYC 233

Query:   238 HGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGM 297
              G+GYLACARCSS+G  +  +P+S     N  L  P T+RC NCSGAGKVMCP+CLCTGM
Sbjct:   234 LGTGYLACARCSSTGALVLTEPVSAIAGGNHSLSPPKTERCSNCSGAGKVMCPTCLCTGM 293

Query:   298 MMASEHDPRIDPFD 311
              MASEHDPRIDPFD
Sbjct:   294 AMASEHDPRIDPFD 307


>TAIR|locus:2044812 [details] [associations]
            symbol:EDA3 "embryo sac development arrest 3"
            species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0031072 "heat shock protein binding"
            evidence=IEA] [GO:0051082 "unfolded protein binding" evidence=IEA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009561 "megagametogenesis" evidence=IMP] [GO:0006098
            "pentose-phosphate shunt" evidence=RCA] [GO:0009902 "chloroplast
            relocation" evidence=RCA] [GO:0010027 "thylakoid membrane
            organization" evidence=RCA] [GO:0010304 "PSII associated
            light-harvesting complex II catabolic process" evidence=RCA]
            [GO:0015995 "chlorophyll biosynthetic process" evidence=RCA]
            [GO:0016117 "carotenoid biosynthetic process" evidence=RCA]
            [GO:0019288 "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0034660 "ncRNA
            metabolic process" evidence=RCA] [GO:0035304 "regulation of protein
            dephosphorylation" evidence=RCA] [GO:0042793 "transcription from
            plastid promoter" evidence=RCA] InterPro:IPR001305 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0009561 GO:GO:0009535
            Gene3D:2.10.230.10 SUPFAM:SSF57938 EMBL:AC004238 EMBL:AY099664
            EMBL:AY128851 IPI:IPI00534099 PIR:T00468 RefSeq:NP_001078004.1
            RefSeq:NP_181032.1 UniGene:At.27661 ProteinModelPortal:O64750
            SMR:O64750 STRING:O64750 PaxDb:O64750 PRIDE:O64750
            EnsemblPlants:AT2G34860.1 EnsemblPlants:AT2G34860.2 GeneID:818051
            KEGG:ath:AT2G34860 TAIR:At2g34860 eggNOG:NOG321647
            HOGENOM:HOG000012828 InParanoid:O64750 OMA:MTACVCA PhylomeDB:O64750
            ProtClustDB:CLSN2683664 ArrayExpress:O64750 Genevestigator:O64750
            Uniprot:O64750
        Length = 186

 Score = 110 (43.8 bits), Expect = 0.00022, P = 0.00022
 Identities = 27/98 (27%), Positives = 44/98 (44%)

Query:   203 IVASFSGGAVGVISALMLIEANNVEQQEKK---RCKYCHGSGYLACARCSSSGVCLSVDP 259
             + A     A  + ++   +   +    +KK    C+ C GSG + C  C  +G   +   
Sbjct:    68 MTACVCASAALISNSYTFVSVQSAAALDKKPGGSCRNCQGSGAVLCDMCGGTGKWKA--- 124

Query:   260 ISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGM 297
             ++   A +    V     CPNC G GK++CP CL TG+
Sbjct:   125 LNRKRAKD----VYEFTECPNCYGRGKLVCPVCLGTGL 158


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      311       276   0.00079  115 3  11 22  0.48    33
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  186 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.73u 0.13s 25.86t   Elapsed:  00:00:01
  Total cpu time:  25.74u 0.13s 25.87t   Elapsed:  00:00:01
  Start:  Mon May 20 20:58:10 2013   End:  Mon May 20 20:58:11 2013

Back to top