BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021514
(311 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B2G6W4|DNAJ_LACRJ Chaperone protein DnaJ OS=Lactobacillus reuteri (strain JCM 1112)
GN=dnaJ PE=3 SV=1
Length = 383
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 34/141 (24%)
Query: 165 FGGLIAPTLELKLGLGGTSYEDFI-----RNMHLPMQLSQVDPIVASFSGGAVGVISALM 219
FGG G GG + D R++ M L +D +
Sbjct: 93 FGGGFDDIFSQFFGGGGRTRRDPTAPRQGRDLQYAMTLDFMDAVFG-------------- 138
Query: 220 LIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVP 273
+ ++ CK CHG+G + C RC +GV SV N ++
Sbjct: 139 --KTTTIKYDRDAECKTCHGTGAKPGKSPITCPRCHGAGVITSVRQTPLGN-----MQTQ 191
Query: 274 TTQRCPNCSGAGKVMCPSCLC 294
TT CP C+G GK++ P C
Sbjct: 192 TT--CPECNGTGKIIKPEDRC 210
>sp|A5VJE8|DNAJ_LACRD Chaperone protein DnaJ OS=Lactobacillus reuteri (strain DSM 20016)
GN=dnaJ PE=3 SV=1
Length = 383
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 34/141 (24%)
Query: 165 FGGLIAPTLELKLGLGGTSYEDFI-----RNMHLPMQLSQVDPIVASFSGGAVGVISALM 219
FGG G GG + D R++ M L +D +
Sbjct: 93 FGGGFDDIFSQFFGGGGRTRRDPTAPRQGRDLQYAMTLDFMDAVFG-------------- 138
Query: 220 LIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVP 273
+ ++ CK CHG+G + C RC +GV SV N ++
Sbjct: 139 --KTTTIKYDRDAECKTCHGTGAKPGKSPITCPRCHGAGVITSVRQTPLGN-----MQTQ 191
Query: 274 TTQRCPNCSGAGKVMCPSCLC 294
TT CP C+G GK++ P C
Sbjct: 192 TT--CPECNGTGKIIKPEDRC 210
>sp|Q8C3L1|SSUH2_MOUSE Protein SSUH2 homolog OS=Mus musculus GN=Ssuh2 PE=2 SV=1
Length = 340
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 232 KRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPS 291
K C CHG G C+ C +G+ + S+ S + +RC CSG+G+ C +
Sbjct: 176 KECHKCHGRGRYKCSGCHGAGM------VRCSSCSGTKRKAKQPRRCHLCSGSGRRRCST 229
Query: 292 C 292
C
Sbjct: 230 C 230
Score = 34.7 bits (78), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 16/79 (20%)
Query: 219 MLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRV-----P 273
++ E + + + +C CHG+G + C+ CS T + P R
Sbjct: 174 LVKECHKCHGRGRYKCSGCHGAGMVRCSSCS-----------GTKRKAKQPRRCHLCSGS 222
Query: 274 TTQRCPNCSGAGKVMCPSC 292
+RC CSG G C +C
Sbjct: 223 GRRRCSTCSGRGNKTCATC 241
>sp|P45555|DNAJ_STAAU Chaperone protein DnaJ OS=Staphylococcus aureus GN=dnaJ PE=3 SV=1
Length = 379
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 21/69 (30%)
Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM-- 288
KK C YC+G+G++A + + G RV T Q CP C+G+G+
Sbjct: 163 KKTCSYCNGAGHVAVEQNTILG------------------RVRTEQVCPKCNGSGQEFEE 204
Query: 289 -CPSCLCTG 296
CP+C G
Sbjct: 205 ACPTCHGKG 213
>sp|P63972|DNAJ_STAAW Chaperone protein DnaJ OS=Staphylococcus aureus (strain MW2)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 21/69 (30%)
Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM-- 288
KK C YC+G+G++A + + G RV T Q CP C+G+G+
Sbjct: 163 KKTCSYCNGAGHVAVEQNTILG------------------RVRTEQVCPKCNGSGQEFEE 204
Query: 289 -CPSCLCTG 296
CP+C G
Sbjct: 205 ACPTCHGKG 213
>sp|A8Z4B8|DNAJ_STAAT Chaperone protein DnaJ OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=dnaJ PE=3 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 21/69 (30%)
Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM-- 288
KK C YC+G+G++A + + G RV T Q CP C+G+G+
Sbjct: 163 KKTCSYCNGAGHVAVEQNTILG------------------RVRTEQVCPKCNGSGQEFEE 204
Query: 289 -CPSCLCTG 296
CP+C G
Sbjct: 205 ACPTCHGKG 213
>sp|Q6G8Y8|DNAJ_STAAS Chaperone protein DnaJ OS=Staphylococcus aureus (strain MSSA476)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 21/69 (30%)
Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM-- 288
KK C YC+G+G++A + + G RV T Q CP C+G+G+
Sbjct: 163 KKTCSYCNGAGHVAVEQNTILG------------------RVRTEQVCPKCNGSGQEFEE 204
Query: 289 -CPSCLCTG 296
CP+C G
Sbjct: 205 ACPTCHGKG 213
>sp|Q6GGC1|DNAJ_STAAR Chaperone protein DnaJ OS=Staphylococcus aureus (strain MRSA252)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 21/69 (30%)
Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM-- 288
KK C YC+G+G++A + + G RV T Q CP C+G+G+
Sbjct: 163 KKTCSYCNGAGHVAVEQNTILG------------------RVRTEQVCPKCNGSGQEFEE 204
Query: 289 -CPSCLCTG 296
CP+C G
Sbjct: 205 ACPTCHGKG 213
>sp|P63971|DNAJ_STAAN Chaperone protein DnaJ OS=Staphylococcus aureus (strain N315)
GN=dnaJ PE=1 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 21/69 (30%)
Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM-- 288
KK C YC+G+G++A + + G RV T Q CP C+G+G+
Sbjct: 163 KKTCSYCNGAGHVAVEQNTILG------------------RVRTEQVCPKCNGSGQEFEE 204
Query: 289 -CPSCLCTG 296
CP+C G
Sbjct: 205 ACPTCHGKG 213
>sp|P63970|DNAJ_STAAM Chaperone protein DnaJ OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=dnaJ PE=1 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 21/69 (30%)
Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM-- 288
KK C YC+G+G++A + + G RV T Q CP C+G+G+
Sbjct: 163 KKTCSYCNGAGHVAVEQNTILG------------------RVRTEQVCPKCNGSGQEFEE 204
Query: 289 -CPSCLCTG 296
CP+C G
Sbjct: 205 ACPTCHGKG 213
>sp|A6QHC2|DNAJ_STAAE Chaperone protein DnaJ OS=Staphylococcus aureus (strain Newman)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 21/69 (30%)
Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM-- 288
KK C YC+G+G++A + + G RV T Q CP C+G+G+
Sbjct: 163 KKTCSYCNGAGHVAVEQNTILG------------------RVRTEQVCPKCNGSGQEFEE 204
Query: 289 -CPSCLCTG 296
CP+C G
Sbjct: 205 ACPTCHGKG 213
>sp|Q5HFI1|DNAJ_STAAC Chaperone protein DnaJ OS=Staphylococcus aureus (strain COL)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 21/69 (30%)
Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM-- 288
KK C YC+G+G++A + + G RV T Q CP C+G+G+
Sbjct: 163 KKTCSYCNGAGHVAVEQNTILG------------------RVRTEQVCPKCNGSGQEFEE 204
Query: 289 -CPSCLCTG 296
CP+C G
Sbjct: 205 ACPTCHGKG 213
>sp|A5ITA7|DNAJ_STAA9 Chaperone protein DnaJ OS=Staphylococcus aureus (strain JH9)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 21/69 (30%)
Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM-- 288
KK C YC+G+G++A + + G RV T Q CP C+G+G+
Sbjct: 163 KKTCSYCNGAGHVAVEQNTILG------------------RVRTEQVCPKCNGSGQEFEE 204
Query: 289 -CPSCLCTG 296
CP+C G
Sbjct: 205 ACPTCHGKG 213
>sp|Q2FXZ3|DNAJ_STAA8 Chaperone protein DnaJ OS=Staphylococcus aureus (strain NCTC 8325)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 21/69 (30%)
Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM-- 288
KK C YC+G+G++A + + G RV T Q CP C+G+G+
Sbjct: 163 KKTCSYCNGAGHVAVEQNTILG------------------RVRTEQVCPKCNGSGQEFEE 204
Query: 289 -CPSCLCTG 296
CP+C G
Sbjct: 205 ACPTCHGKG 213
>sp|Q2FGE4|DNAJ_STAA3 Chaperone protein DnaJ OS=Staphylococcus aureus (strain USA300)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 21/69 (30%)
Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM-- 288
KK C YC+G+G++A + + G RV T Q CP C+G+G+
Sbjct: 163 KKTCSYCNGAGHVAVEQNTILG------------------RVRTEQVCPKCNGSGQEFEE 204
Query: 289 -CPSCLCTG 296
CP+C G
Sbjct: 205 ACPTCHGKG 213
>sp|A6U251|DNAJ_STAA2 Chaperone protein DnaJ OS=Staphylococcus aureus (strain JH1)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 21/69 (30%)
Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM-- 288
KK C YC+G+G++A + + G RV T Q CP C+G+G+
Sbjct: 163 KKTCSYCNGAGHVAVEQNTILG------------------RVRTEQVCPKCNGSGQEFEE 204
Query: 289 -CPSCLCTG 296
CP+C G
Sbjct: 205 ACPTCHGKG 213
>sp|A7X2Y0|DNAJ_STAA1 Chaperone protein DnaJ OS=Staphylococcus aureus (strain Mu3 / ATCC
700698) GN=dnaJ PE=3 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 21/69 (30%)
Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM-- 288
KK C YC+G+G++A + + G RV T Q CP C+G+G+
Sbjct: 163 KKTCSYCNGAGHVAVEQNTILG------------------RVRTEQVCPKCNGSGQEFEE 204
Query: 289 -CPSCLCTG 296
CP+C G
Sbjct: 205 ACPTCHGKG 213
>sp|Q2YT48|DNAJ_STAAB Chaperone protein DnaJ OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=dnaJ PE=3 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 21/69 (30%)
Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM-- 288
KK C YC+G+G++A + + G RV T Q CP C+G+G+
Sbjct: 163 KKTCSYCNGAGHVAVEQNTILG------------------RVRTEQVCPKCNGSGQEFEE 204
Query: 289 -CPSCLCTG 296
CP+C G
Sbjct: 205 ACPTCHGKG 213
>sp|A9KKT9|DNAJ_CLOPH Chaperone protein DnaJ OS=Clostridium phytofermentans (strain ATCC
700394 / DSM 18823 / ISDg) GN=dnaJ PE=3 SV=1
Length = 381
Score = 38.5 bits (88), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 16/77 (20%)
Query: 231 KKRCKYCHGSGYL------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGA 284
K C+ CHGSG C +C+ G T + G +R Q CP+C G
Sbjct: 146 KDECETCHGSGAKPGSSAETCHKCNGKGQV-----TFTQQSLFGMVR--NVQTCPDCRGT 198
Query: 285 GKVM---CPSCLCTGMM 298
GK++ CP C +G +
Sbjct: 199 GKIIKEKCPDCYGSGYI 215
>sp|Q8RB67|DNAJ_THETN Chaperone protein DnaJ OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=dnaJ PE=3
SV=1
Length = 384
Score = 38.1 bits (87), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 234 CKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPL-RVPTTQRCPNCSGAGKVM---C 289
C CHG+G +R + VC I + N P R+ + CP C G GK++ C
Sbjct: 155 CDVCHGTGVKPGSRPETCPVCHGTGEIRQTQ--NTPFGRIVNIRTCPRCHGEGKIITDPC 212
Query: 290 PSCLCTGMM 298
C TG +
Sbjct: 213 QKCGGTGKI 221
>sp|Q5FSL4|DNAJ_GLUOX Chaperone protein DnaJ OS=Gluconobacter oxydans (strain 621H)
GN=dnaJ PE=3 SV=1
Length = 380
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 42/110 (38%)
Query: 208 SGGAVGVISALMLIEA-----NNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPIST 262
+G V V + L+EA +VE + + C+ CHGSG S DP +
Sbjct: 118 TGADVQVQVEITLMEAFTGVTKDVEVRTRVTCEACHGSG--------------SADPKAG 163
Query: 263 SNASNGPLRVPTTQRCPNCSGAGKVM-----------CPSCLCTGMMMAS 301
S+ CP C GAGKV CP+C +G +A+
Sbjct: 164 SST------------CPTCHGAGKVRAQQGFFLVERPCPTCHGSGRTVAN 201
>sp|Q49Y21|DNAJ_STAS1 Chaperone protein DnaJ OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=dnaJ
PE=3 SV=1
Length = 378
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 21/70 (30%)
Query: 230 EKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM- 288
+KK C YC+GSG+++ + + G RV T + CP CSG+G+
Sbjct: 161 KKKTCHYCNGSGHVSVEQNTILG------------------RVRTEKVCPVCSGSGQEFE 202
Query: 289 --CPSCLCTG 296
CP+C G
Sbjct: 203 EPCPTCHGKG 212
>sp|Q6YPM2|DNAJ_ONYPE Chaperone protein DnaJ OS=Onion yellows phytoplasma (strain OY-M)
GN=dnaJ PE=3 SV=1
Length = 257
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 14/71 (19%)
Query: 234 CKYCHGSG------YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287
C+ CHG G + C RC +G ++ N + + Q CPNCSG G+
Sbjct: 141 CRVCHGKGAVSNQDVITCKRCGGNGQIITEQRTFLGN-------IRSRQVCPNCSGKGQE 193
Query: 288 MCPSCL-CTGM 297
+ C C G
Sbjct: 194 IKNKCYACHGQ 204
>sp|C4Z1J3|DNAJ_EUBE2 Chaperone protein DnaJ OS=Eubacterium eligens (strain ATCC 27750 /
VPI C15-48) GN=dnaJ PE=3 SV=1
Length = 375
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 16/77 (20%)
Query: 231 KKRCKYCHGSGYL------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGA 284
K C CHG+G C++C G T + G +R + Q CP+C G
Sbjct: 148 KDECSSCHGTGAKPGTSPETCSKCGGRGQV-----TFTQQSFLGMVR--SQQPCPDCHGT 200
Query: 285 GKVM---CPSCLCTGMM 298
GK++ CP C TG +
Sbjct: 201 GKIIKEKCPDCYGTGYI 217
>sp|Q8EUM4|DNAJ_MYCPE Chaperone protein DnaJ OS=Mycoplasma penetrans (strain HF-2)
GN=dnaJ PE=3 SV=1
Length = 388
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 57/147 (38%), Gaps = 35/147 (23%)
Query: 179 LGGTSYEDFIRNMH---------LPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQ 229
GG+ +ED N + + V IV +F VGV +E +
Sbjct: 108 FGGSGFEDIFSNFFGGGRRGASSQQREANLVVSIVLTFVESVVGV--------KKTIEYK 159
Query: 230 EKKRCKYCHGSG-------YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCS 282
+K C+ CHGSG C+ C+ SGV I+ G ++ C C+
Sbjct: 160 IEKDCESCHGSGADNSEGSISTCSNCNGSGV-----EITQKRTIMGIIQSQNI--CSRCN 212
Query: 283 GAGKVMCPSC-LCTGMMMASEHDPRID 308
G GK + C C G + H+ R++
Sbjct: 213 GEGKEIHKKCNSCKGRKV---HEERVE 236
>sp|C5D4U0|DNAJ_GEOSW Chaperone protein DnaJ OS=Geobacillus sp. (strain WCH70) GN=dnaJ
PE=3 SV=1
Length = 380
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 225 NVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPL-RVPTTQRCPNCSG 283
++E ++ C CHG+G + + C IST ++ P R+ + CP C G
Sbjct: 139 DIEIPREETCDTCHGTGAKPGTKKETCSYCHGTGQISTEQST--PFGRIVNRRTCPYCGG 196
Query: 284 AG---KVMCPSCLCTGMM 298
G K C +C TG +
Sbjct: 197 TGQYIKEKCTTCGGTGRV 214
>sp|Q8CP18|DNAJ_STAES Chaperone protein DnaJ OS=Staphylococcus epidermidis (strain ATCC
12228) GN=dnaJ PE=3 SV=1
Length = 373
Score = 35.8 bits (81), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 21/69 (30%)
Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM-- 288
KK C YC+G+G ++ + + G RV T Q CP C G+G+
Sbjct: 157 KKTCSYCNGAGRVSVEQNTILG------------------RVRTEQVCPKCEGSGQEFEE 198
Query: 289 -CPSCLCTG 296
CP+C G
Sbjct: 199 PCPTCKGKG 207
>sp|Q5HNW7|DNAJ_STAEQ Chaperone protein DnaJ OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=dnaJ PE=3 SV=1
Length = 373
Score = 35.8 bits (81), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 21/69 (30%)
Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM-- 288
KK C YC+G+G ++ + + G RV T Q CP C G+G+
Sbjct: 157 KKTCSYCNGAGRVSVEQNTILG------------------RVRTEQVCPKCEGSGQEFEE 198
Query: 289 -CPSCLCTG 296
CP+C G
Sbjct: 199 PCPTCKGKG 207
>sp|Q9KWS6|DNAJ_BACTR Chaperone protein DnaJ OS=Bacillus thermoglucosidasius GN=dnaJ PE=3
SV=1
Length = 380
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 225 NVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPL-RVPTTQRCPNCSG 283
++E ++ C CHG+G + + C IST ++ P R+ + CP C G
Sbjct: 139 DIEIPREETCNTCHGTGAKPGTKKETCSYCHGTGQISTEQST--PFGRIVNRRTCPYCGG 196
Query: 284 AG---KVMCPSCLCTGMM 298
G K C +C TG +
Sbjct: 197 TGQYIKERCTTCGGTGRV 214
>sp|Q9Y2M2|SSUH2_HUMAN Protein SSUH2 homolog OS=Homo sapiens GN=SSUH2 PE=1 SV=1
Length = 353
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 232 KRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPS 291
K C CHG G C+ C +G + + + ++RC C+G+G+ C +
Sbjct: 153 KECHKCHGRGRYKCSGCHGAGT------VRCPSCCGAKRKAKQSRRCQLCAGSGRRRCST 206
Query: 292 C 292
C
Sbjct: 207 C 207
>sp|B9DNJ9|DNAJ_STACT Chaperone protein DnaJ OS=Staphylococcus carnosus (strain TM300)
GN=dnaJ PE=3 SV=1
Length = 377
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 21/70 (30%)
Query: 230 EKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM- 288
+KK C YC+GSG+++ + + G RV T + CP C+G G+ +
Sbjct: 160 KKKTCHYCNGSGHVSVEQNTILG------------------RVRTEKVCPVCNGTGEEIE 201
Query: 289 --CPSCLCTG 296
CP+C G
Sbjct: 202 EPCPTCHGKG 211
>sp|B3WEQ6|DNAJ_LACCB Chaperone protein DnaJ OS=Lactobacillus casei (strain BL23) GN=dnaJ
PE=3 SV=1
Length = 387
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 21/66 (31%)
Query: 234 CKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM---CP 290
C CHGSGY+ R ++ G + T Q C C G GK + CP
Sbjct: 173 CHKCHGSGYIQVQRNTAFGAMM------------------TRQVCDVCGGTGKEIKEKCP 214
Query: 291 SCLCTG 296
+C TG
Sbjct: 215 TCHGTG 220
>sp|Q038N5|DNAJ_LACC3 Chaperone protein DnaJ OS=Lactobacillus casei (strain ATCC 334)
GN=dnaJ PE=3 SV=1
Length = 387
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 21/66 (31%)
Query: 234 CKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM---CP 290
C CHGSGY+ R ++ G + T Q C C G GK + CP
Sbjct: 173 CHKCHGSGYIQVQRNTAFGAMM------------------TRQVCDVCGGTGKEIKEKCP 214
Query: 291 SCLCTG 296
+C TG
Sbjct: 215 TCHGTG 220
>sp|Q70WY6|DNAJ_FUSNP Chaperone protein DnaJ OS=Fusobacterium nucleatum subsp.
polymorphum GN=dnaJ PE=3 SV=1
Length = 394
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 27/78 (34%)
Query: 233 RCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQR-----------CPNC 281
+C++CHG+G D + T NG + T QR CP+C
Sbjct: 162 KCEHCHGTG-------------AEDDKMKTCPTCNGQGTIKTQQRTILGVMQSQSVCPDC 208
Query: 282 SGAGKV---MCPSCLCTG 296
G GKV C C TG
Sbjct: 209 HGTGKVPEKKCKHCRGTG 226
>sp|Q7UM96|DNAJ_RHOBA Chaperone protein DnaJ OS=Rhodopirellula baltica (strain SH1)
GN=dnaJ PE=3 SV=1
Length = 391
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 29/72 (40%), Gaps = 20/72 (27%)
Query: 234 CKYCHGSGYLA------CARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287
C C GSG A C C G + S G LRV TT CP C GAGK
Sbjct: 150 CDTCDGSGAAAGSEPVTCTMCGGQGQVIQ---------SAGILRVQTT--CPTCKGAGKQ 198
Query: 288 M---CPSCLCTG 296
+ C C TG
Sbjct: 199 IGEPCGKCRGTG 210
>sp|Q18GZ3|DNAJ_HALWD Chaperone protein DnaJ OS=Haloquadratum walsbyi (strain DSM 16790)
GN=dnaJ PE=3 SV=1
Length = 387
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 14/72 (19%)
Query: 232 KRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAG 285
++C C+G G+ C +C+ G +V + RV TQ CP C G+G
Sbjct: 159 EKCPDCNGRGHPSDADVRTCPQCNGQGQTTTVRETALG-------RVQQTQTCPRCDGSG 211
Query: 286 KVMCPSC-LCTG 296
++ +C C G
Sbjct: 212 EMYTQTCSTCNG 223
>sp|B8GNX2|DNAJ_THISH Chaperone protein DnaJ OS=Thioalkalivibrio sp. (strain HL-EbGR7)
GN=dnaJ PE=3 SV=1
Length = 377
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 234 CKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSC- 292
C CHGSG + G C V + Q CP C G GK++ C
Sbjct: 143 CGECHGSGAEKGTTPETCGTCGGVGQVRMQQGF-----FSVQQTCPRCHGTGKMITHPCK 197
Query: 293 LCTGMMMASEH 303
C G EH
Sbjct: 198 ACHGQGRVEEH 208
>sp|Q8A8C3|DNAJ_BACTN Chaperone protein DnaJ OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=dnaJ
PE=3 SV=1
Length = 396
Score = 35.0 bits (79), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 234 CKYCHGSGYLA------CARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287
C +CHG+G C C SG I G ++ TT CP C+G GK+
Sbjct: 167 CNHCHGTGAEGDGGSETCPTCKGSGSV-----IRNQQTILGTMQTRTT--CPTCNGEGKI 219
Query: 288 M---CPSCLCTGMMMASE 302
+ C C G++ E
Sbjct: 220 IKNKCKECGGDGIVYGEE 237
>sp|Q05646|DNAJ_ERYRH Chaperone protein DnaJ OS=Erysipelothrix rhusiopathiae GN=dnaJ PE=2
SV=1
Length = 370
Score = 35.0 bits (79), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 19/75 (25%)
Query: 225 NVEQQEKKRCKYCHGSGYLA------CARCSSSGVCLSVDPISTSNASNGPLRVPTTQ-R 277
NV+++ C CHGSG + C+RC +G T P V +Q
Sbjct: 142 NVDEE----CTSCHGSGAHSKDDIKTCSRCGGTG--------QTVTQQRTPFGVFQSQAT 189
Query: 278 CPNCSGAGKVMCPSC 292
CP+C G+GK + C
Sbjct: 190 CPDCGGSGKTITKRC 204
>sp|Q9HRY3|DNAJ_HALSA Chaperone protein DnaJ OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=dnaJ PE=3 SV=1
Length = 391
Score = 35.0 bits (79), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 16/78 (20%)
Query: 234 CKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPL-RVPTTQRCPNCSGAGK 286
C C GSGY C +C GV V PL RV Q C C G G+
Sbjct: 165 CADCGGSGYPEDADVRTCPQCDGQGVVTQV--------RQTPLGRVQQRQECSRCGGEGE 216
Query: 287 VMCPSC-LCTGMMMASEH 303
+ +C C G E
Sbjct: 217 LHSETCSTCGGQGQTRER 234
>sp|B0R3H3|DNAJ_HALS3 Chaperone protein DnaJ OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=dnaJ PE=3 SV=1
Length = 391
Score = 35.0 bits (79), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 16/78 (20%)
Query: 234 CKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPL-RVPTTQRCPNCSGAGK 286
C C GSGY C +C GV V PL RV Q C C G G+
Sbjct: 165 CADCGGSGYPEDADVRTCPQCDGQGVVTQV--------RQTPLGRVQQRQECSRCGGEGE 216
Query: 287 VMCPSC-LCTGMMMASEH 303
+ +C C G E
Sbjct: 217 LHSETCSTCGGQGQTRER 234
>sp|A2A863|ITB4_MOUSE Integrin beta-4 OS=Mus musculus GN=Itgb4 PE=2 SV=1
Length = 1818
Score = 35.0 bits (79), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 42/111 (37%), Gaps = 14/111 (12%)
Query: 206 SFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNA 265
SFS G + A ++ + E Q++ R CH G C C VC T N
Sbjct: 441 SFSDGLR--MDASVICDVCPCELQKEVRSARCHFRGDFMCGHC----VCNEGWSGKTCNC 494
Query: 266 SNGPLRVPTTQRCPN------CSGAGKVMCPSCLCTGMMMASEHDPRIDPF 310
S G L TQ C CSG G+ C C+C G H D F
Sbjct: 495 STGSL--SDTQPCLREGEDKPCSGHGECQCGRCVCYGEGRYEGHFCEYDNF 543
>sp|Q3J7D9|DNAJ_NITOC Chaperone protein DnaJ OS=Nitrosococcus oceani (strain ATCC 19707 /
NCIMB 11848) GN=dnaJ PE=3 SV=1
Length = 380
Score = 34.7 bits (78), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 242 YLACARCSSSGVCLSVDPISTSN-ASNGPLRVPT-----TQRCPNCSGAGKVM-CPSCLC 294
Y+AC C SG PI+ +G +R+ Q CP C G+G+++ P C
Sbjct: 147 YVACKACEGSGAKPGTSPITCPTCGGHGQVRMQQGFFSLQQTCPRCHGSGQIVDSPCSTC 206
Query: 295 TGMMMASEH 303
G EH
Sbjct: 207 RGEGRVREH 215
>sp|Q8L397|DNAJ_ACHLA Chaperone protein DnaJ OS=Acholeplasma laidlawii GN=dnaJ PE=3 SV=1
Length = 369
Score = 34.7 bits (78), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 219 MLIEANNVEQQEKKRCKYCHGSGYLA------CARCSSSGVCLSVDPISTSNASNGPLRV 272
+L NV + C +CHGSG + C++C G ++VD + G +R
Sbjct: 129 VLGTTKNVSVDITQDCGHCHGSGAESSKDVHTCSKCHGQGF-INVDQRTMF----GTMR- 182
Query: 273 PTTQRCPNCSGAGKVMCPSC-LCTG 296
+ Q CP C G G+ + C +C+G
Sbjct: 183 -SQQVCPQCQGEGQTIDNKCHVCSG 206
>sp|A7GT07|DNAJ_BACCN Chaperone protein DnaJ OS=Bacillus cereus subsp. cytotoxis (strain
NVH 391-98) GN=dnaJ PE=3 SV=1
Length = 366
Score = 34.7 bits (78), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 18/75 (24%)
Query: 234 CKYCHGSGYL------ACARCSSSGVCLSVDPISTSNASNGPL-RVPTTQRCPNCSGAGK 286
C CHGSG C CS +G +SV+ N P R+ Q C +CSG G+
Sbjct: 141 CDTCHGSGAKPGTTKETCKYCSGTGQ-ISVE-------QNTPFGRIVNRQTCRHCSGTGQ 192
Query: 287 VM---CPSCLCTGMM 298
++ C +C TG +
Sbjct: 193 MIKEKCTTCHGTGKV 207
>sp|Q64VI7|DNAJ_BACFR Chaperone protein DnaJ OS=Bacteroides fragilis (strain YCH46)
GN=dnaJ PE=3 SV=1
Length = 394
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 18/97 (18%)
Query: 207 FSGGAVGVISALMLIE-ANNVEQQEKKR----CKYCHG------SGYLACARCSSSGVCL 255
F G + V L L E + VE++ K + C +CHG SG C C SG
Sbjct: 133 FRGSDLRVKVKLNLKEISTGVEKKFKLKKYIPCSHCHGTGAEGNSGSETCPTCKGSGSV- 191
Query: 256 SVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSC 292
I G ++ TT CP C+G GK++ C
Sbjct: 192 ----IRNQQTILGTMQTRTT--CPTCNGEGKIIKDKC 222
>sp|O84345|DNAJ_CHLTR Chaperone protein DnaJ OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=dnaJ PE=3 SV=1
Length = 392
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 26/102 (25%)
Query: 203 IVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSG------YLACARCSSSGVCLS 256
I SF A GV L++ K C C GSG C RC SG +
Sbjct: 139 ITLSFEEAAKGVEKELLV--------SGYKSCDACSGSGANTAKGVKVCDRCKGSGQVVQ 190
Query: 257 VDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSC-LCTGM 297
S G + +T CP+CSG G+V+ C +C G
Sbjct: 191 ---------SRGFFSMAST--CPDCSGEGRVITDPCSVCRGQ 221
>sp|B0BBX5|DNAJ_CHLTB Chaperone protein DnaJ OS=Chlamydia trachomatis serovar L2b (strain
UCH-1/proctitis) GN=dnaJ PE=3 SV=1
Length = 392
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 26/102 (25%)
Query: 203 IVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSG------YLACARCSSSGVCLS 256
I SF A GV L++ K C C GSG C RC SG +
Sbjct: 139 ITLSFEEAAKGVEKELLV--------SGYKSCDACSGSGANTAKGVKVCDRCKGSGQVVQ 190
Query: 257 VDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSC-LCTGM 297
S G + +T CP+CSG G+V+ C +C G
Sbjct: 191 ---------SRGFFSMAST--CPDCSGEGRVITDPCSVCRGQ 221
>sp|Q3KM17|DNAJ_CHLTA Chaperone protein DnaJ OS=Chlamydia trachomatis serovar A (strain
HAR-13 / ATCC VR-571B) GN=dnaJ PE=3 SV=1
Length = 392
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 26/102 (25%)
Query: 203 IVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSG------YLACARCSSSGVCLS 256
I SF A GV L++ K C C GSG C RC SG +
Sbjct: 139 ITLSFEEAAKGVEKELLV--------SGYKSCDACSGSGANTAKGVKVCDRCKGSGQVVQ 190
Query: 257 VDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSC-LCTGM 297
S G + +T CP+CSG G+V+ C +C G
Sbjct: 191 ---------SRGFFSMAST--CPDCSGEGRVITDPCSVCRGQ 221
>sp|B0B7R0|DNAJ_CHLT2 Chaperone protein DnaJ OS=Chlamydia trachomatis serovar L2 (strain
434/Bu / ATCC VR-902B) GN=dnaJ PE=3 SV=1
Length = 392
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 26/102 (25%)
Query: 203 IVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSG------YLACARCSSSGVCLS 256
I SF A GV L++ K C C GSG C RC SG +
Sbjct: 139 ITLSFEEAAKGVEKELLV--------SGYKSCDACSGSGANTAKGVKVCDRCKGSGQVVQ 190
Query: 257 VDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSC-LCTGM 297
S G + +T CP+CSG G+V+ C +C G
Sbjct: 191 ---------SRGFFSMAST--CPDCSGEGRVITDPCSVCRGQ 221
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,456,011
Number of Sequences: 539616
Number of extensions: 4777724
Number of successful extensions: 18183
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 226
Number of HSP's that attempted gapping in prelim test: 17730
Number of HSP's gapped (non-prelim): 526
length of query: 311
length of database: 191,569,459
effective HSP length: 117
effective length of query: 194
effective length of database: 128,434,387
effective search space: 24916271078
effective search space used: 24916271078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)