Query 021514
Match_columns 311
No_of_seqs 216 out of 1346
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 03:35:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.2 1.5E-11 3.3E-16 120.8 4.3 69 224-301 135-212 (371)
2 PLN03165 chaperone protein dna 99.1 2.5E-11 5.4E-16 101.7 3.6 74 216-299 25-99 (111)
3 PRK14282 chaperone protein Dna 99.0 1.2E-10 2.5E-15 113.3 4.2 98 189-309 126-233 (369)
4 PRK14298 chaperone protein Dna 99.0 1.2E-10 2.7E-15 113.7 4.0 79 224-309 134-222 (377)
5 PRK14296 chaperone protein Dna 99.0 1.3E-10 2.8E-15 113.4 3.8 79 224-309 142-230 (372)
6 TIGR02349 DnaJ_bact chaperone 99.0 2E-10 4.3E-15 110.6 3.8 98 189-309 117-224 (354)
7 PRK14278 chaperone protein Dna 99.0 2.1E-10 4.6E-15 112.0 3.7 98 189-309 113-220 (378)
8 PRK14280 chaperone protein Dna 99.0 3.3E-10 7E-15 110.6 3.6 79 224-309 136-224 (376)
9 PRK14276 chaperone protein Dna 99.0 3.2E-10 6.9E-15 110.7 3.4 79 224-309 139-227 (380)
10 PRK14281 chaperone protein Dna 99.0 3.4E-10 7.4E-15 111.2 3.5 79 224-309 156-243 (397)
11 PRK14279 chaperone protein Dna 98.9 4.3E-10 9.3E-15 110.5 3.7 75 224-309 166-250 (392)
12 PTZ00037 DnaJ_C chaperone prot 98.9 4.7E-10 1E-14 111.6 4.0 97 190-309 125-232 (421)
13 PRK14286 chaperone protein Dna 98.9 4.1E-10 8.9E-15 109.8 3.4 94 189-309 124-227 (372)
14 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.9 8.5E-10 1.8E-14 83.5 4.1 56 234-296 1-66 (66)
15 PRK14277 chaperone protein Dna 98.9 5.2E-10 1.1E-14 109.5 3.6 97 190-309 130-236 (386)
16 PRK14285 chaperone protein Dna 98.9 5.9E-10 1.3E-14 108.5 3.4 94 189-309 120-223 (365)
17 PRK10767 chaperone protein Dna 98.9 7.8E-10 1.7E-14 107.4 4.2 95 188-309 115-219 (371)
18 PRK14297 chaperone protein Dna 98.9 7E-10 1.5E-14 108.3 3.8 98 189-309 122-229 (380)
19 PRK14301 chaperone protein Dna 98.9 6E-10 1.3E-14 108.7 3.1 94 189-309 118-221 (373)
20 PRK14287 chaperone protein Dna 98.9 7.2E-10 1.6E-14 108.1 3.3 98 189-309 112-219 (371)
21 PRK14290 chaperone protein Dna 98.9 9.3E-10 2E-14 106.9 3.7 97 190-309 124-229 (365)
22 PRK14284 chaperone protein Dna 98.9 7.1E-10 1.5E-14 108.7 2.9 75 224-309 151-235 (391)
23 PRK14288 chaperone protein Dna 98.9 1.2E-09 2.6E-14 106.5 4.2 94 189-309 114-216 (369)
24 PRK14293 chaperone protein Dna 98.9 8.9E-10 1.9E-14 107.3 3.2 97 190-309 118-224 (374)
25 PRK14295 chaperone protein Dna 98.9 9.5E-10 2.1E-14 108.0 3.3 93 190-309 141-243 (389)
26 PRK14300 chaperone protein Dna 98.9 1.1E-09 2.4E-14 106.7 3.5 95 188-309 118-222 (372)
27 PRK14294 chaperone protein Dna 98.9 1.5E-09 3.3E-14 105.4 3.9 95 188-309 117-221 (366)
28 PRK14289 chaperone protein Dna 98.8 1.6E-09 3.5E-14 105.8 3.7 97 190-309 129-235 (386)
29 KOG2813 Predicted molecular ch 98.8 1.9E-09 4E-14 104.7 3.8 72 230-301 186-271 (406)
30 PRK14283 chaperone protein Dna 98.8 1.7E-09 3.7E-14 105.6 3.5 97 190-309 121-227 (378)
31 PRK14291 chaperone protein Dna 98.8 1.7E-09 3.7E-14 105.7 3.5 94 189-309 130-232 (382)
32 PRK14292 chaperone protein Dna 98.8 3.3E-09 7.1E-14 103.1 3.4 98 189-309 113-221 (371)
33 KOG0712 Molecular chaperone (D 98.4 3.1E-07 6.6E-12 89.8 4.4 100 188-309 100-210 (337)
34 COG1107 Archaea-specific RecJ- 98.2 1.2E-06 2.6E-11 90.8 3.6 70 232-301 3-83 (715)
35 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.9 1.4E-05 3E-10 60.5 3.7 39 245-299 1-54 (66)
36 COG0484 DnaJ DnaJ-class molecu 97.6 3.5E-05 7.6E-10 76.4 3.4 42 242-299 142-196 (371)
37 COG1107 Archaea-specific RecJ- 97.4 8.3E-05 1.8E-09 77.5 3.2 45 230-292 17-86 (715)
38 PRK14279 chaperone protein Dna 97.1 0.00036 7.8E-09 69.1 3.1 43 242-300 173-226 (392)
39 KOG2824 Glutaredoxin-related p 97.0 0.00098 2.1E-08 64.1 5.0 54 229-293 227-280 (281)
40 PRK14284 chaperone protein Dna 96.9 0.00055 1.2E-08 67.6 2.9 43 242-300 158-211 (391)
41 PRK14296 chaperone protein Dna 96.9 0.00061 1.3E-08 67.0 2.9 76 188-287 122-218 (372)
42 PRK14300 chaperone protein Dna 96.9 0.00064 1.4E-08 66.7 2.7 38 231-287 162-210 (372)
43 PRK14282 chaperone protein Dna 96.8 0.00085 1.9E-08 65.7 3.4 43 242-300 152-209 (369)
44 PRK14301 chaperone protein Dna 96.8 0.00074 1.6E-08 66.4 2.9 43 242-300 144-197 (373)
45 PRK14298 chaperone protein Dna 96.8 0.00066 1.4E-08 66.9 2.5 75 189-287 115-210 (377)
46 PRK14295 chaperone protein Dna 96.8 0.00084 1.8E-08 66.4 3.3 43 242-300 166-219 (389)
47 PRK14286 chaperone protein Dna 96.8 0.00081 1.8E-08 66.1 3.1 43 242-300 150-203 (372)
48 PRK14297 chaperone protein Dna 96.8 0.00093 2E-08 65.7 3.1 43 242-300 148-205 (380)
49 PRK14276 chaperone protein Dna 96.8 0.00084 1.8E-08 66.1 2.7 43 242-300 146-203 (380)
50 PRK14278 chaperone protein Dna 96.8 0.00085 1.8E-08 66.1 2.7 38 231-287 156-208 (378)
51 PRK10767 chaperone protein Dna 96.8 0.00099 2.1E-08 65.2 3.1 43 242-300 142-195 (371)
52 PRK14285 chaperone protein Dna 96.8 0.00084 1.8E-08 65.8 2.6 38 231-287 163-211 (365)
53 PRK14280 chaperone protein Dna 96.7 0.00099 2.1E-08 65.5 2.6 75 189-287 117-212 (376)
54 PRK14287 chaperone protein Dna 96.7 0.001 2.2E-08 65.3 2.7 43 242-300 138-195 (371)
55 PTZ00037 DnaJ_C chaperone prot 96.7 0.0012 2.6E-08 66.3 3.0 42 242-300 150-206 (421)
56 PRK14277 chaperone protein Dna 96.6 0.0013 2.9E-08 64.8 3.0 43 242-300 155-212 (386)
57 PRK14289 chaperone protein Dna 96.6 0.0011 2.4E-08 65.2 2.4 39 230-287 170-223 (386)
58 PRK14288 chaperone protein Dna 96.6 0.0014 3E-08 64.4 2.9 39 230-287 155-204 (369)
59 KOG2813 Predicted molecular ch 96.6 0.0018 3.8E-08 63.9 3.6 58 243-300 188-259 (406)
60 PRK14294 chaperone protein Dna 96.6 0.0016 3.4E-08 63.8 3.1 42 243-300 145-197 (366)
61 PLN03165 chaperone protein dna 96.5 0.0023 5E-08 54.0 3.5 37 241-299 40-88 (111)
62 TIGR02642 phage_xxxx uncharact 96.5 0.0017 3.8E-08 59.1 2.5 26 276-301 100-130 (186)
63 PRK14290 chaperone protein Dna 96.4 0.0019 4.1E-08 63.2 2.8 38 231-287 165-217 (365)
64 PRK14281 chaperone protein Dna 96.4 0.002 4.3E-08 63.9 2.7 75 189-287 137-231 (397)
65 TIGR02349 DnaJ_bact chaperone 96.4 0.002 4.3E-08 62.5 2.6 38 231-287 160-212 (354)
66 PRK14291 chaperone protein Dna 96.4 0.0026 5.7E-08 62.6 3.2 41 242-298 156-207 (382)
67 PRK14293 chaperone protein Dna 96.3 0.0035 7.5E-08 61.6 3.5 43 242-300 143-200 (374)
68 PRK14283 chaperone protein Dna 96.1 0.0038 8.2E-08 61.4 2.6 39 230-287 162-215 (378)
69 PRK14292 chaperone protein Dna 96.1 0.0039 8.5E-08 61.0 2.7 38 231-287 157-209 (371)
70 cd03031 GRX_GRX_like Glutaredo 95.8 0.0096 2.1E-07 52.1 3.9 50 230-289 98-147 (147)
71 TIGR02642 phage_xxxx uncharact 95.5 0.0092 2E-07 54.4 2.4 26 231-256 99-129 (186)
72 KOG0715 Molecular chaperone (D 95.2 0.008 1.7E-07 57.7 1.2 66 225-301 158-232 (288)
73 PRK03564 formate dehydrogenase 92.2 0.2 4.3E-06 49.1 4.6 38 273-310 224-276 (309)
74 cd03031 GRX_GRX_like Glutaredo 85.2 0.81 1.7E-05 40.2 3.0 11 288-298 135-145 (147)
75 PF04216 FdhE: Protein involve 85.2 0.25 5.4E-06 46.9 -0.2 37 274-310 210-262 (290)
76 COG1198 PriA Primosomal protei 84.9 0.84 1.8E-05 49.4 3.6 48 230-295 434-484 (730)
77 TIGR01562 FdhE formate dehydro 84.7 0.75 1.6E-05 45.0 2.8 37 274-310 223-276 (305)
78 PF07092 DUF1356: Protein of u 83.9 0.56 1.2E-05 44.6 1.5 26 275-300 27-52 (238)
79 KOG0712 Molecular chaperone (D 80.8 0.78 1.7E-05 45.6 1.3 73 183-287 110-198 (337)
80 TIGR00595 priA primosomal prot 80.5 1.6 3.5E-05 44.8 3.5 47 231-295 213-262 (505)
81 KOG0715 Molecular chaperone (D 78.9 1.1 2.5E-05 43.1 1.7 43 243-301 165-218 (288)
82 TIGR00630 uvra excinuclease AB 78.2 1.5 3.2E-05 48.7 2.5 25 275-299 736-772 (924)
83 TIGR00630 uvra excinuclease AB 77.5 1.8 3.9E-05 48.0 3.0 34 244-287 738-771 (924)
84 KOG2824 Glutaredoxin-related p 77.4 1.8 4E-05 42.1 2.6 13 288-300 264-276 (281)
85 PRK00349 uvrA excinuclease ABC 73.9 1.7 3.6E-05 48.4 1.5 25 275-299 738-774 (943)
86 PF07092 DUF1356: Protein of u 73.7 1.7 3.7E-05 41.4 1.4 26 232-257 28-53 (238)
87 KOG2090 Metalloendopeptidase f 71.9 4.3 9.3E-05 43.6 3.9 57 68-137 299-355 (704)
88 PRK14873 primosome assembly pr 71.2 3.8 8.2E-05 43.9 3.4 48 230-295 382-431 (665)
89 PRK00349 uvrA excinuclease ABC 70.3 3.2 7E-05 46.2 2.7 34 244-287 740-773 (943)
90 PF13901 DUF4206: Domain of un 70.2 3.1 6.8E-05 37.9 2.2 50 230-293 141-196 (202)
91 COG3058 FdhE Uncharacterized p 68.6 0.58 1.3E-05 45.7 -3.0 37 273-309 223-275 (308)
92 PRK00635 excinuclease ABC subu 67.1 2.9 6.2E-05 49.6 1.6 12 276-287 1608-1619(1809)
93 KOG3088 Secretory carrier memb 67.1 14 0.0003 36.6 5.9 37 124-160 96-143 (313)
94 PRK05580 primosome assembly pr 66.9 5.6 0.00012 42.4 3.6 48 231-295 381-430 (679)
95 PRK00635 excinuclease ABC subu 65.3 4.7 0.0001 47.9 2.8 33 244-286 1609-1641(1809)
96 COG0178 UvrA Excinuclease ATPa 63.8 5.8 0.00013 44.0 3.0 21 67-88 416-436 (935)
97 COG0178 UvrA Excinuclease ATPa 62.2 4.3 9.4E-05 45.0 1.7 24 275-298 730-765 (935)
98 KOG1829 Uncharacterized conser 61.9 5.2 0.00011 42.6 2.2 41 73-113 393-440 (580)
99 TIGR02098 MJ0042_CXXC MJ0042 f 56.7 12 0.00025 25.0 2.5 12 243-254 3-14 (38)
100 PRK04023 DNA polymerase II lar 54.8 9.8 0.00021 43.1 2.9 46 230-295 625-672 (1121)
101 PRK14714 DNA polymerase II lar 53.9 9.7 0.00021 43.9 2.7 45 231-295 667-718 (1337)
102 PF13719 zinc_ribbon_5: zinc-r 51.9 12 0.00026 25.5 2.0 13 243-255 3-15 (37)
103 PRK14559 putative protein seri 51.1 9.3 0.0002 41.0 2.0 17 233-249 3-22 (645)
104 PF07295 DUF1451: Protein of u 49.2 11 0.00025 33.2 1.9 29 73-101 3-31 (146)
105 COG1198 PriA Primosomal protei 49.1 10 0.00023 41.3 2.0 35 230-284 443-484 (730)
106 PF14353 CpXC: CpXC protein 47.9 17 0.00037 30.3 2.7 16 243-258 2-17 (128)
107 PRK12380 hydrogenase nickel in 47.0 11 0.00023 31.7 1.3 7 243-249 71-77 (113)
108 PRK14892 putative transcriptio 46.9 21 0.00046 29.8 3.0 26 283-308 39-64 (99)
109 PF03589 Antiterm: Antitermina 44.6 11 0.00024 31.0 1.0 39 243-287 6-44 (95)
110 PRK14873 primosome assembly pr 43.4 16 0.00035 39.3 2.3 34 230-284 391-431 (665)
111 PF01155 HypA: Hydrogenase exp 42.3 10 0.00023 31.5 0.6 26 275-300 70-100 (113)
112 TIGR00595 priA primosomal prot 41.4 17 0.00036 37.6 2.0 35 230-284 221-262 (505)
113 PF15616 TerY-C: TerY-C metal 40.9 20 0.00043 31.4 2.1 20 282-301 101-120 (131)
114 PRK11032 hypothetical protein; 39.7 19 0.00041 32.5 1.8 10 239-248 121-130 (160)
115 TIGR00100 hypA hydrogenase nic 38.6 17 0.00037 30.5 1.3 7 243-249 71-77 (115)
116 PF03589 Antiterm: Antitermina 38.5 14 0.0003 30.4 0.7 10 289-298 35-44 (95)
117 PRK05580 primosome assembly pr 38.1 19 0.00042 38.4 1.9 35 230-284 389-430 (679)
118 PRK00420 hypothetical protein; 36.3 23 0.0005 30.2 1.7 19 276-294 24-48 (112)
119 PRK00564 hypA hydrogenase nick 36.3 18 0.0004 30.4 1.2 7 243-249 72-78 (117)
120 TIGR00209 galT_1 galactose-1-p 35.9 71 0.0015 31.7 5.3 83 66-157 107-195 (347)
121 PF00831 Ribosomal_L29: Riboso 35.6 54 0.0012 24.3 3.4 33 76-115 2-34 (58)
122 PF07295 DUF1451: Protein of u 34.7 33 0.00072 30.3 2.5 12 239-250 109-120 (146)
123 PF08271 TF_Zn_Ribbon: TFIIB z 34.4 26 0.00056 24.3 1.5 9 244-252 2-10 (43)
124 COG2260 Predicted Zn-ribbon RN 34.3 33 0.00071 26.5 2.1 34 275-311 5-39 (59)
125 PF13453 zf-TFIIB: Transcripti 33.9 37 0.0008 23.3 2.2 9 275-283 19-27 (41)
126 PF03833 PolC_DP2: DNA polymer 33.7 14 0.0003 41.2 0.0 45 231-295 655-701 (900)
127 TIGR03655 anti_R_Lar restricti 33.5 58 0.0013 23.5 3.3 12 243-254 2-13 (53)
128 PRK05978 hypothetical protein; 32.2 23 0.00049 31.6 1.1 7 276-282 34-40 (148)
129 PRK10884 SH3 domain-containing 31.6 34 0.00073 31.7 2.2 65 93-173 130-194 (206)
130 PRK13130 H/ACA RNA-protein com 31.5 42 0.0009 25.4 2.3 34 275-311 5-39 (56)
131 PF13717 zinc_ribbon_4: zinc-r 28.7 44 0.00095 22.7 1.8 12 243-254 3-14 (36)
132 PF08273 Prim_Zn_Ribbon: Zinc- 28.2 33 0.00071 24.3 1.1 13 243-255 4-16 (40)
133 PF01096 TFIIS_C: Transcriptio 27.9 67 0.0015 22.1 2.7 34 244-282 2-35 (39)
134 PF14257 DUF4349: Domain of un 27.6 98 0.0021 28.8 4.5 35 138-173 213-247 (262)
135 PTZ00368 universal minicircle 26.9 83 0.0018 26.8 3.7 24 276-299 78-116 (148)
136 smart00440 ZnF_C2C2 C2C2 Zinc 26.8 91 0.002 21.6 3.2 34 244-282 2-35 (40)
137 PF14354 Lar_restr_allev: Rest 26.3 78 0.0017 22.9 2.9 15 243-258 4-18 (61)
138 PRK00488 pheS phenylalanyl-tRN 26.2 43 0.00094 33.5 2.0 26 231-259 260-285 (339)
139 PLN02643 ADP-glucose phosphory 25.8 1.1E+02 0.0023 30.3 4.6 86 65-157 108-199 (336)
140 PRK00464 nrdR transcriptional 24.9 1.3E+02 0.0027 27.0 4.5 60 244-311 2-62 (154)
141 PRK04406 hypothetical protein; 24.8 2.5E+02 0.0055 22.1 5.7 34 82-117 26-59 (75)
142 TIGR01010 BexC_CtrB_KpsE polys 24.8 3.1E+02 0.0067 26.6 7.6 37 82-118 279-315 (362)
143 PRK02119 hypothetical protein; 24.7 3.4E+02 0.0074 21.2 6.4 38 78-117 20-57 (73)
144 PF06698 DUF1192: Protein of u 24.3 95 0.0021 23.8 3.1 35 74-115 14-48 (59)
145 PHA01745 hypothetical protein 24.2 57 0.0012 32.3 2.3 38 135-173 102-139 (306)
146 PF03276 Gag_spuma: Spumavirus 24.1 2.6E+02 0.0057 30.1 7.2 44 72-115 124-179 (582)
147 PF00098 zf-CCHC: Zinc knuckle 24.1 46 0.001 19.5 1.1 11 277-287 2-12 (18)
148 TIGR00757 RNaseEG ribonuclease 24.0 35 0.00076 34.7 1.0 13 275-287 390-402 (414)
149 COG3809 Uncharacterized protei 24.0 45 0.00097 27.4 1.4 9 275-283 21-29 (88)
150 PF11119 DUF2633: Protein of u 23.8 48 0.001 25.6 1.4 17 153-169 10-26 (59)
151 PRK03824 hypA hydrogenase nick 23.7 41 0.00088 29.0 1.1 10 241-250 69-78 (135)
152 PF05129 Elf1: Transcription e 23.3 39 0.00085 27.0 0.9 23 282-304 42-64 (81)
153 PRK11032 hypothetical protein; 23.2 66 0.0014 29.0 2.4 28 273-300 122-156 (160)
154 TIGR00577 fpg formamidopyrimid 22.7 1.8E+02 0.004 27.6 5.4 37 138-188 187-225 (272)
155 TIGR00757 RNaseEG ribonuclease 22.7 35 0.00077 34.7 0.7 15 288-302 392-406 (414)
156 PF03487 IL13: Interleukin-13; 22.6 29 0.00062 25.1 0.0 20 153-172 2-21 (43)
157 PRK00295 hypothetical protein; 22.6 2.9E+02 0.0063 21.3 5.5 32 78-109 16-47 (68)
158 PF07754 DUF1610: Domain of un 22.5 59 0.0013 20.8 1.4 8 275-282 16-23 (24)
159 PF08792 A2L_zn_ribbon: A2L zi 22.2 96 0.0021 20.9 2.5 13 243-255 4-16 (33)
160 cd01702 PolY_Pol_eta DNA Polym 22.0 3.5E+02 0.0076 26.7 7.4 52 130-181 250-307 (359)
161 PRK02793 phi X174 lysis protei 21.7 3.3E+02 0.0071 21.2 5.8 37 79-117 20-56 (72)
162 PRK09710 lar restriction allev 21.5 56 0.0012 25.6 1.4 18 286-303 27-44 (64)
163 smart00778 Prim_Zn_Ribbon Zinc 21.2 60 0.0013 22.6 1.4 13 243-255 4-16 (37)
164 PHA03029 hypothetical protein; 21.2 73 0.0016 26.0 2.1 19 84-102 39-57 (92)
165 PHA02683 ORF078 thioredoxin-li 21.2 73 0.0016 25.7 2.0 40 68-107 28-73 (75)
166 PRK03681 hypA hydrogenase nick 20.8 54 0.0012 27.5 1.3 9 276-284 88-96 (114)
167 KOG2802 Membrane protein HUEL 20.8 1.4E+02 0.003 31.1 4.3 37 75-112 443-489 (503)
168 PRK00488 pheS phenylalanyl-tRN 20.8 48 0.001 33.2 1.1 22 274-298 259-280 (339)
169 PRK14714 DNA polymerase II lar 20.7 67 0.0015 37.5 2.3 20 276-295 680-701 (1337)
170 PF04438 zf-HIT: HIT zinc fing 20.6 53 0.0012 21.7 1.0 18 276-293 3-20 (30)
171 PRK00846 hypothetical protein; 20.5 4.3E+02 0.0093 21.2 6.3 38 78-117 24-61 (77)
172 PRK14810 formamidopyrimidine-D 20.3 2.4E+02 0.0053 26.8 5.7 75 138-249 186-271 (272)
173 PHA00626 hypothetical protein 20.1 90 0.002 24.1 2.2 18 276-293 12-30 (59)
174 COG5082 AIR1 Arginine methyltr 20.0 77 0.0017 29.5 2.2 26 229-254 58-90 (190)
175 PF13543 KSR1-SAM: SAM like do 20.0 1.3E+02 0.0029 26.3 3.6 34 72-109 90-123 (129)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.5e-11 Score=120.77 Aligned_cols=69 Identities=30% Similarity=0.678 Sum_probs=58.4
Q ss_pred ceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCC
Q 021514 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLC 294 (311)
Q Consensus 224 nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~G 294 (311)
..+++.+...|+.|+|+|. .+|++|+|+|++...+.+ +..+.+++|++|+|+|++ +|++|+|
T Consensus 135 ~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~---------g~~~~~~~C~~C~G~G~~i~~pC~~C~G 205 (371)
T COG0484 135 KEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT---------GFFSFQQTCPTCNGTGKIIKDPCGKCKG 205 (371)
T ss_pred eeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee---------eEEEEEEECCCCccceeECCCCCCCCCC
Confidence 4667788999999999975 699999999999876543 235678999999999998 8999999
Q ss_pred ceEEece
Q 021514 295 TGMMMAS 301 (311)
Q Consensus 295 tG~v~~s 301 (311)
.|++...
T Consensus 206 ~G~v~~~ 212 (371)
T COG0484 206 KGRVKKK 212 (371)
T ss_pred CCeEeee
Confidence 9997644
No 2
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.14 E-value=2.5e-11 Score=101.71 Aligned_cols=74 Identities=24% Similarity=0.539 Sum_probs=59.3
Q ss_pred hhhhhhhccee-eccccccccccccCccccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCceeeCCCCCC
Q 021514 216 SALMLIEANNV-EQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLC 294 (311)
Q Consensus 216 sal~vvE~nnv-k~q~~k~C~~C~GtG~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV~CptC~G 294 (311)
..+++..+++. +.+....|..|+|+|..+|..|+|+|.+..... ...+.+.+|++|.|+|+..|+.|+|
T Consensus 25 ~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~----------g~~q~~~~C~~C~G~Gk~~C~~C~G 94 (111)
T PLN03165 25 PVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVELG----------GGEKEVSKCINCDGAGSLTCTTCQG 94 (111)
T ss_pred cEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEeC----------CcEEEEEECCCCCCcceeeCCCCCC
Confidence 34455555555 556789999999999999999999999875431 1235688999999999999999999
Q ss_pred ceEEe
Q 021514 295 TGMMM 299 (311)
Q Consensus 295 tG~v~ 299 (311)
+|.+.
T Consensus 95 ~G~~~ 99 (111)
T PLN03165 95 SGIQP 99 (111)
T ss_pred CEEEe
Confidence 99874
No 3
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.05 E-value=1.2e-10 Score=113.29 Aligned_cols=98 Identities=20% Similarity=0.483 Sum_probs=74.7
Q ss_pred hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCC
Q 021514 189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIST 262 (311)
Q Consensus 189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~ 262 (311)
.++++++.|++.|. |.|.. .+++..+.+.|..|+|+|. .+|+.|+|+|.+...++++.
T Consensus 126 ~di~~~l~~slee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~ 189 (369)
T PRK14282 126 EDIRYEIEVTLSDL----INGAE------------IPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFF 189 (369)
T ss_pred CCeEEEEEEEHHHh----cCCeE------------EEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccC
Confidence 35566666666655 66654 4566788899999999996 58999999999987665542
Q ss_pred CCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514 263 SNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 263 g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP 309 (311)
+..+.+.+|+.|+|+|++ .|+.|.|.|.+... ..++.|.|
T Consensus 190 -------G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 233 (369)
T PRK14282 190 -------GVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPA 233 (369)
T ss_pred -------cceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCC
Confidence 234567899999999987 89999999988753 45666655
No 4
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.04 E-value=1.2e-10 Score=113.75 Aligned_cols=79 Identities=25% Similarity=0.614 Sum_probs=63.3
Q ss_pred ceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCC
Q 021514 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLC 294 (311)
Q Consensus 224 nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~G 294 (311)
.++...+...|..|+|+|. .+|+.|+|+|.+...++.. .+..+.+.+|+.|.|+|++ +|+.|+|
T Consensus 134 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~-------~g~~~~~~~C~~C~G~G~~~~~~C~~C~G 206 (377)
T PRK14298 134 KDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTP-------LGQFVTTTTCSTCHGRGQVIESPCPVCSG 206 (377)
T ss_pred EEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecC-------ceeEEEEEeCCCCCCCCcccCCCCCCCCC
Confidence 4566778899999999996 6899999999998765432 2345678999999999987 8999999
Q ss_pred ceEEece-eeCCCcCC
Q 021514 295 TGMMMAS-EHDPRIDP 309 (311)
Q Consensus 295 tG~v~~s-EhD~riDP 309 (311)
.|.+... +.++.|.|
T Consensus 207 ~g~v~~~~~l~V~Ipp 222 (377)
T PRK14298 207 TGKVRKTRKITVNVPA 222 (377)
T ss_pred ccEEEEEEEEEecCCC
Confidence 9999743 55666655
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.03 E-value=1.3e-10 Score=113.36 Aligned_cols=79 Identities=25% Similarity=0.587 Sum_probs=62.4
Q ss_pred ceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCC
Q 021514 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLC 294 (311)
Q Consensus 224 nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~G 294 (311)
..++..+...|..|+|+|. .+|+.|+|+|.+...++++ ++..+.+.+|+.|+|+|++ +|+.|.|
T Consensus 142 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g-------~~~~q~~~~C~~C~G~G~~~~~~C~~C~G 214 (372)
T PRK14296 142 KIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMG-------FFQFQQSAKCNVCNGAGKIIKNKCKNCKG 214 (372)
T ss_pred EEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEecc-------ceEEEEEecCCCcCCcceeecccccCCCC
Confidence 4566778899999999996 5799999999998766543 2334567899999999987 8999999
Q ss_pred ceEEece-eeCCCcCC
Q 021514 295 TGMMMAS-EHDPRIDP 309 (311)
Q Consensus 295 tG~v~~s-EhD~riDP 309 (311)
.|.+... +-.+.|.|
T Consensus 215 ~g~v~~~~~~~V~Ip~ 230 (372)
T PRK14296 215 KGKYLERKKIEVNIPK 230 (372)
T ss_pred ceEEEEEEEEEEEECC
Confidence 9988643 55555554
No 6
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.00 E-value=2e-10 Score=110.60 Aligned_cols=98 Identities=23% Similarity=0.543 Sum_probs=74.5
Q ss_pred hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCC
Q 021514 189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIST 262 (311)
Q Consensus 189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~ 262 (311)
.++++++.+++.|- |.|.. .++...+.+.|..|+|+|. ..|..|+|+|.+.....++.
T Consensus 117 ~d~~~~l~vsLee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~ 180 (354)
T TIGR02349 117 EDLRYDLELTFEEA----VFGVE------------KEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPF 180 (354)
T ss_pred CCeEEEEEEEHHHH----hCCee------------EEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccC
Confidence 45666677776665 66654 4566788899999999995 58999999999987665432
Q ss_pred CCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514 263 SNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 263 g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP 309 (311)
+..+.+.+|+.|.|+|++ +|+.|.|.|.+... ..++.|.|
T Consensus 181 -------g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 224 (354)
T TIGR02349 181 -------GFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPA 224 (354)
T ss_pred -------CceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECC
Confidence 334557899999999987 89999999998754 45555554
No 7
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.00 E-value=2.1e-10 Score=112.04 Aligned_cols=98 Identities=29% Similarity=0.537 Sum_probs=72.2
Q ss_pred hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCC
Q 021514 189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIST 262 (311)
Q Consensus 189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~ 262 (311)
.++++++.|++.|- |.|.. ..+...+...|..|+|+|. .+|+.|+|+|.+...+...
T Consensus 113 ~d~~~~l~vtLee~----~~G~~------------~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~- 175 (378)
T PRK14278 113 SDSLLRMRLDLEEC----ATGVT------------KQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSF- 175 (378)
T ss_pred CCeEEEEEEEHHHh----cCCeE------------EEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEecc-
Confidence 34555566665554 55554 4566778899999999996 5899999999987765432
Q ss_pred CCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514 263 SNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 263 g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP 309 (311)
++..+...+|+.|+|.|++ +|+.|.|.|.+... ..++.|.|
T Consensus 176 ------~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 220 (378)
T PRK14278 176 ------LGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPA 220 (378)
T ss_pred ------ceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECC
Confidence 2334457899999999987 89999999998654 45556655
No 8
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.96 E-value=3.3e-10 Score=110.56 Aligned_cols=79 Identities=30% Similarity=0.682 Sum_probs=61.8
Q ss_pred ceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCC
Q 021514 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLC 294 (311)
Q Consensus 224 nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~G 294 (311)
.+++..+...|..|+|+|. ..|+.|+|+|.+...+.++. +..+.+.+|+.|.|+|++ +|+.|+|
T Consensus 136 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~-------g~~~~~~~C~~C~G~G~~~~~~C~~C~G 208 (376)
T PRK14280 136 KEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPF-------GRVVNRQTCPHCNGTGQEIKEKCPTCHG 208 (376)
T ss_pred eEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCC-------ceEEEEEEcCCCCCCCceecCCCCCCCC
Confidence 4567788899999999995 58999999999877654432 233467899999999987 8999999
Q ss_pred ceEEece-eeCCCcCC
Q 021514 295 TGMMMAS-EHDPRIDP 309 (311)
Q Consensus 295 tG~v~~s-EhD~riDP 309 (311)
.|.+... +.++.|.|
T Consensus 209 ~g~v~~~~~i~V~Ip~ 224 (376)
T PRK14280 209 KGKVRKRKKINVKIPA 224 (376)
T ss_pred ceEEEEEEEEEEEeCC
Confidence 9998643 44555554
No 9
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.96 E-value=3.2e-10 Score=110.75 Aligned_cols=79 Identities=27% Similarity=0.542 Sum_probs=61.6
Q ss_pred ceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCC
Q 021514 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLC 294 (311)
Q Consensus 224 nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~G 294 (311)
.++...+.+.|..|+|+|. .+|+.|+|+|.+...+++.. +..+.+.+|+.|.|+|++ +|+.|.|
T Consensus 139 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~-------G~~~~~~~C~~C~G~G~~~~~~C~~C~G 211 (380)
T PRK14276 139 KEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPL-------GMMRRQVTCDVCHGTGKEIKEPCQTCHG 211 (380)
T ss_pred EEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCC-------ceEEEEEECCCCCCCCccccCCCCCCCC
Confidence 4566788899999999995 58999999999987655432 233457899999999987 8999999
Q ss_pred ceEEece-eeCCCcCC
Q 021514 295 TGMMMAS-EHDPRIDP 309 (311)
Q Consensus 295 tG~v~~s-EhD~riDP 309 (311)
.|.+... .-++.|.|
T Consensus 212 ~g~~~~~~~l~V~Ip~ 227 (380)
T PRK14276 212 TGHEKQAHTVSVKIPA 227 (380)
T ss_pred ceEEEEEEEEEEEeCC
Confidence 9998643 34555554
No 10
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.96 E-value=3.4e-10 Score=111.24 Aligned_cols=79 Identities=24% Similarity=0.605 Sum_probs=63.3
Q ss_pred ceeeccccccccccccCcc-----ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCc
Q 021514 224 NNVEQQEKKRCKYCHGSGY-----LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCT 295 (311)
Q Consensus 224 nnvk~q~~k~C~~C~GtG~-----v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~Gt 295 (311)
.+++..+.+.|..|+|+|. ..|..|+|+|.+...+.++. +..+.+.+|+.|.|+|++ +|+.|+|.
T Consensus 156 ~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~-------g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 228 (397)
T PRK14281 156 KTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMF-------GQFVNITACPTCGGEGRVVKDRCPACYGE 228 (397)
T ss_pred EEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEeccc-------ceEEEEEecCCCcceeeeeCCCCCCCCCC
Confidence 4567788899999999996 57999999999977655432 233457799999999987 89999999
Q ss_pred eEEece-eeCCCcCC
Q 021514 296 GMMMAS-EHDPRIDP 309 (311)
Q Consensus 296 G~v~~s-EhD~riDP 309 (311)
|.+... +.++.|.|
T Consensus 229 g~v~~~~~~~V~Ip~ 243 (397)
T PRK14281 229 GIKQGEVTVKVTVPA 243 (397)
T ss_pred ccEecceEEEEecCC
Confidence 999754 56677765
No 11
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=4.3e-10 Score=110.48 Aligned_cols=75 Identities=29% Similarity=0.643 Sum_probs=60.5
Q ss_pred ceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCC
Q 021514 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLC 294 (311)
Q Consensus 224 nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~G 294 (311)
.+++..+...|..|+|+|. .+|+.|+|+|.+...... .+.+.+|+.|.|+|++ +|+.|.|
T Consensus 166 ~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~-----------~~~~~~C~~C~G~G~~i~~~C~~C~G 234 (392)
T PRK14279 166 MPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGA-----------FGFSEPCTDCRGTGSIIEDPCEECKG 234 (392)
T ss_pred EEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecc-----------eEEEEecCCCCceeEEeCCcCCCCCC
Confidence 4566778899999999996 589999999998765321 2467999999999987 8999999
Q ss_pred ceEEece-eeCCCcCC
Q 021514 295 TGMMMAS-EHDPRIDP 309 (311)
Q Consensus 295 tG~v~~s-EhD~riDP 309 (311)
.|.+... +..+.|.|
T Consensus 235 ~g~v~~~~~~~V~Ip~ 250 (392)
T PRK14279 235 TGVTTRTRTINVRIPP 250 (392)
T ss_pred CeEEEEeeeeEEEeCC
Confidence 9999744 56666655
No 12
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.95 E-value=4.7e-10 Score=111.57 Aligned_cols=97 Identities=20% Similarity=0.534 Sum_probs=71.2
Q ss_pred ccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc-----ccCCCCCCCceeeeecCCCCCC
Q 021514 190 NMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY-----LACARCSSSGVCLSVDPISTSN 264 (311)
Q Consensus 190 s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~-----v~C~~C~GSG~i~~~~~~s~g~ 264 (311)
++.+++.|++.|. |.|.. .+++..+...|..|+|+|. .+|+.|+|+|.+....+++
T Consensus 125 di~~~l~vtLee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g--- 185 (421)
T PTZ00037 125 DIVSHLKVTLEQI----YNGAM------------RKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMG--- 185 (421)
T ss_pred CEEEEeeeeHHHH----hCCCc------------eEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeec---
Confidence 4455555555544 55554 4566778899999999996 5899999999876654432
Q ss_pred CCCCCCCCCceeeCCCCCcCcee-----eCCCCCCceEEece-eeCCCcCC
Q 021514 265 ASNGPLRVPTTQRCPNCSGAGKV-----MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 265 g~c~~~~~q~~~~CptC~G~GkV-----~CptC~GtG~v~~s-EhD~riDP 309 (311)
++..+.+.+|+.|+|+|++ +|++|+|.|.+... +..+.|+|
T Consensus 186 ----~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 232 (421)
T PTZ00037 186 ----SMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDK 232 (421)
T ss_pred ----ceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCC
Confidence 1334568899999999986 69999999999754 56666655
No 13
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.94 E-value=4.1e-10 Score=109.82 Aligned_cols=94 Identities=26% Similarity=0.550 Sum_probs=71.4
Q ss_pred hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCC
Q 021514 189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIST 262 (311)
Q Consensus 189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~ 262 (311)
.++++++.|++.|- |.|.. .+++..+.+.|..|+|+|. .+|+.|+|+|.+.....
T Consensus 124 ~di~~~l~vtLee~----~~G~~------------k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G--- 184 (372)
T PRK14286 124 SDLRYNLEVSLEDA----ALGRE------------YKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQG--- 184 (372)
T ss_pred CCeeEEEEEEHHHH----hCCee------------EEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEec---
Confidence 34556666665554 56654 4566788899999999996 68999999999876431
Q ss_pred CCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEec-eeeCCCcCC
Q 021514 263 SNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMA-SEHDPRIDP 309 (311)
Q Consensus 263 g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~-sEhD~riDP 309 (311)
..+.+.+|+.|.|+|++ +|+.|+|.|.+.. .+.++.|.|
T Consensus 185 --------~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~ 227 (372)
T PRK14286 185 --------FFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPP 227 (372)
T ss_pred --------eEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECC
Confidence 22467899999999987 8999999999875 356666665
No 14
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.93 E-value=8.5e-10 Score=83.51 Aligned_cols=56 Identities=32% Similarity=0.798 Sum_probs=44.2
Q ss_pred ccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee----eCCCCCCce
Q 021514 234 CKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV----MCPSCLCTG 296 (311)
Q Consensus 234 C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV----~CptC~GtG 296 (311)
|..|+|+|. .+|+.|+|+|++....+.. .+..+.+.+|+.|+|+|++ +|+.|+|.|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~-------~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTP-------GGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESS-------STTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCC-------CeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 889999997 5899999999998876532 3556789999999999998 699999986
No 15
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=5.2e-10 Score=109.50 Aligned_cols=97 Identities=23% Similarity=0.522 Sum_probs=71.3
Q ss_pred ccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCC
Q 021514 190 NMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTS 263 (311)
Q Consensus 190 s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g 263 (311)
++++.+.+++.|- |.|.. .++...+.+.|..|+|+|. .+|+.|+|+|.+...+.++.
T Consensus 130 di~~~l~vtLee~----~~G~~------------~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~- 192 (386)
T PRK14277 130 DIRYDLELTFEEA----AFGTE------------KEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPF- 192 (386)
T ss_pred CEEEEEEEEHHHH----hCCeE------------EEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccC-
Confidence 4555555555544 55554 4566788899999999995 58999999999887655432
Q ss_pred CCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514 264 NASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 264 ~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP 309 (311)
+..+...+|+.|.|+|++ +|+.|+|.|.+... +..+.|.|
T Consensus 193 ------G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 236 (386)
T PRK14277 193 ------GRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPA 236 (386)
T ss_pred ------ceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCC
Confidence 233456799999999987 89999999998543 34555554
No 16
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.92 E-value=5.9e-10 Score=108.48 Aligned_cols=94 Identities=26% Similarity=0.535 Sum_probs=69.8
Q ss_pred hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCC
Q 021514 189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIST 262 (311)
Q Consensus 189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~ 262 (311)
+++++++.+++.|- |.|.. .+++..+...|..|+|+|. ..|..|+|+|++....
T Consensus 120 ~di~~~l~vtlee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---- 179 (365)
T PRK14285 120 QDLTYQIEISLEDA----YLGYK------------NNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGG---- 179 (365)
T ss_pred CCEEEEEEEEHHHh----hCCeE------------EEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecC----
Confidence 34555555555544 45543 4567778899999999995 5799999999887421
Q ss_pred CCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514 263 SNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 263 g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP 309 (311)
+..+.+.+|+.|.|+|++ +|+.|.|.|.+... +.++.|.|
T Consensus 180 -------G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 223 (365)
T PRK14285 180 -------GFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPA 223 (365)
T ss_pred -------ceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECC
Confidence 223578999999999987 89999999998643 55666665
No 17
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.92 E-value=7.8e-10 Score=107.42 Aligned_cols=95 Identities=23% Similarity=0.520 Sum_probs=72.7
Q ss_pred hhccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCC
Q 021514 188 IRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIS 261 (311)
Q Consensus 188 ~~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s 261 (311)
..++++++.|++.|. |.|.. .+++..+.+.|..|+|+|. ..|+.|+|+|.+.....
T Consensus 115 g~di~~~l~vsLee~----~~G~~------------~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g-- 176 (371)
T PRK10767 115 GADLRYNMEITLEEA----VRGVT------------KEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQG-- 176 (371)
T ss_pred CCCeEEEEEeehHHh----hCCee------------EEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeec--
Confidence 345667777777666 66654 4566778899999999996 48999999999875431
Q ss_pred CCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514 262 TSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 262 ~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP 309 (311)
..+.+.+|+.|.|+|++ .|+.|.|.|.+... +.++.|.|
T Consensus 177 ---------~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 219 (371)
T PRK10767 177 ---------FFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPA 219 (371)
T ss_pred ---------eEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCC
Confidence 12467799999999987 89999999998643 46666655
No 18
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.91 E-value=7e-10 Score=108.27 Aligned_cols=98 Identities=19% Similarity=0.483 Sum_probs=71.6
Q ss_pred hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCC
Q 021514 189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIST 262 (311)
Q Consensus 189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~ 262 (311)
.++++++.|++.|- |.|.. .++...+...|..|+|+|. .+|+.|+|+|.+...++++.
T Consensus 122 ~di~~~l~vsLee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~ 185 (380)
T PRK14297 122 ADIEYTINLTFEEA----VFGVE------------KEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPL 185 (380)
T ss_pred CCEEEEEEEEHHHh----cCCeE------------EEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCC
Confidence 35566666665554 55554 4566778899999999995 58999999999887654432
Q ss_pred CCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514 263 SNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 263 g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP 309 (311)
+..+.+.+|+.|.|+|++ +|+.|+|.|.+... +-.+.|.|
T Consensus 186 -------G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~ 229 (380)
T PRK14297 186 -------GSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPA 229 (380)
T ss_pred -------ceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCC
Confidence 234568899999999987 89999999987533 34444443
No 19
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.91 E-value=6e-10 Score=108.72 Aligned_cols=94 Identities=26% Similarity=0.537 Sum_probs=71.6
Q ss_pred hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCC
Q 021514 189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIST 262 (311)
Q Consensus 189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~ 262 (311)
.++++++.|++.|. |.|.. .+++..+...|..|+|+|. .+|+.|+|+|.+....
T Consensus 118 ~di~~~l~vtLee~----~~G~~------------k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---- 177 (373)
T PRK14301 118 SDLRYNLTVSFRQA----AKGDE------------VTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ---- 177 (373)
T ss_pred CCEEEEEeccHHHH----hCCce------------EEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEe----
Confidence 45566666666655 66654 4566778899999999996 5799999999987542
Q ss_pred CCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEec-eeeCCCcCC
Q 021514 263 SNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMA-SEHDPRIDP 309 (311)
Q Consensus 263 g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~-sEhD~riDP 309 (311)
+..+.+.+|+.|+|+|++ .|+.|+|.|.+.. .+..+.|.|
T Consensus 178 -------G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 221 (373)
T PRK14301 178 -------GFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPA 221 (373)
T ss_pred -------eeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCC
Confidence 123468999999999987 8999999999864 356666665
No 20
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.90 E-value=7.2e-10 Score=108.11 Aligned_cols=98 Identities=24% Similarity=0.531 Sum_probs=71.3
Q ss_pred hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCC
Q 021514 189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIST 262 (311)
Q Consensus 189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~ 262 (311)
.++++++.|++.|- |.|.. .++...+...|..|+|+|. .+|+.|+|+|.+...+.++.
T Consensus 112 ~d~~~~l~vslee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~ 175 (371)
T PRK14287 112 ADLQYTMTLEFKEA----VFGKE------------TEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPF 175 (371)
T ss_pred CCEEEEEEEEHHHh----cCCeE------------EEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCC
Confidence 34555555555554 55544 4567788899999999995 57999999999887655432
Q ss_pred CCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514 263 SNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 263 g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP 309 (311)
+..+...+|+.|.|+|++ +|+.|.|.|.+... +-++.|.|
T Consensus 176 -------G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 219 (371)
T PRK14287 176 -------GRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPA 219 (371)
T ss_pred -------ceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECC
Confidence 223457899999999987 89999999998643 34555544
No 21
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.89 E-value=9.3e-10 Score=106.90 Aligned_cols=97 Identities=24% Similarity=0.585 Sum_probs=70.4
Q ss_pred ccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc-----ccCCCCCCCceeeeecCCCCCC
Q 021514 190 NMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY-----LACARCSSSGVCLSVDPISTSN 264 (311)
Q Consensus 190 s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~-----v~C~~C~GSG~i~~~~~~s~g~ 264 (311)
++++.+.|++.|. |.|.. .+++..+.+.|..|+|+|. ..|+.|+|+|.+......+
T Consensus 124 di~~~l~lsLee~----~~G~~------------~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g--- 184 (365)
T PRK14290 124 DIYTNLDISLEDA----YYGTE------------KRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQG--- 184 (365)
T ss_pred CEEEEEEecHHHh----cCCEE------------EEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccC---
Confidence 4555555555554 55554 4567788899999999996 5899999999887654321
Q ss_pred CCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514 265 ASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 265 g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP 309 (311)
+..++...+|+.|.|.|++ +|+.|.|.|.+... +-.+.|.|
T Consensus 185 ----~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 229 (365)
T PRK14290 185 ----FFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPK 229 (365)
T ss_pred ----eEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECC
Confidence 1223456899999999987 89999999998754 45555544
No 22
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.89 E-value=7.1e-10 Score=108.71 Aligned_cols=75 Identities=28% Similarity=0.610 Sum_probs=59.8
Q ss_pred ceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCC
Q 021514 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLC 294 (311)
Q Consensus 224 nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~G 294 (311)
.+++..+...|..|+|+|. .+|+.|+|+|.+..... ..+.+.+|+.|+|.|++ +|+.|.|
T Consensus 151 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G-----------~~~~~~~C~~C~G~G~~~~~~C~~C~G 219 (391)
T PRK14284 151 KELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRG-----------FFSMASTCPECGGEGRVITDPCSVCRG 219 (391)
T ss_pred EEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEec-----------eEEEEEECCCCCCCCcccCCcCCCCCC
Confidence 4566778899999999996 57999999999875431 13467899999999987 8999999
Q ss_pred ceEEece-eeCCCcCC
Q 021514 295 TGMMMAS-EHDPRIDP 309 (311)
Q Consensus 295 tG~v~~s-EhD~riDP 309 (311)
.|.+... +-++.|.|
T Consensus 220 ~g~v~~~~~l~V~Ip~ 235 (391)
T PRK14284 220 QGRIKDKRSVHVHIPA 235 (391)
T ss_pred cceecceEEEEEEECC
Confidence 9998643 55666655
No 23
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.88 E-value=1.2e-09 Score=106.52 Aligned_cols=94 Identities=23% Similarity=0.505 Sum_probs=69.2
Q ss_pred hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc-----ccCCCCCCCceeeeecCCCCC
Q 021514 189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY-----LACARCSSSGVCLSVDPISTS 263 (311)
Q Consensus 189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~-----v~C~~C~GSG~i~~~~~~s~g 263 (311)
.++.+++.|++.|. |.|.. .+++..+.+.|..|+|+|. .+|+.|+|+|.+...+.
T Consensus 114 ~di~~~l~vslee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g---- 173 (369)
T PRK14288 114 PDYLQTIELSFKEA----VFGCK------------KTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQG---- 173 (369)
T ss_pred CCeeEeccccHHHH----hCCeE------------EEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEec----
Confidence 34555556665554 55554 4566778889999999996 58999999999875431
Q ss_pred CCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514 264 NASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 264 ~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP 309 (311)
..+...+|+.|.|+|++ +|+.|.|.|.+... ..++.|.|
T Consensus 174 -------~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~ 216 (369)
T PRK14288 174 -------FMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPE 216 (369)
T ss_pred -------eEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCC
Confidence 12456799999999987 89999999998753 44555544
No 24
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.88 E-value=8.9e-10 Score=107.34 Aligned_cols=97 Identities=22% Similarity=0.539 Sum_probs=71.1
Q ss_pred ccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCC
Q 021514 190 NMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTS 263 (311)
Q Consensus 190 s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g 263 (311)
++.+++.+++.|. |.|.. .+++..+.+.|..|+|+|. .+|+.|+|+|.+.....+..
T Consensus 118 di~~~l~vsLee~----~~G~~------------k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~- 180 (374)
T PRK14293 118 DLRYDLKLDFREA----IFGGE------------KEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPF- 180 (374)
T ss_pred CeEEEEEeeHHHH----hCCce------------EEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCc-
Confidence 4445555555554 55543 4566788899999999986 47999999999876654432
Q ss_pred CCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEecee-eCCCcCC
Q 021514 264 NASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMASE-HDPRIDP 309 (311)
Q Consensus 264 ~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~sE-hD~riDP 309 (311)
+..+...+|+.|.|.|++ .|+.|.|.|.+...+ -++.|.|
T Consensus 181 ------g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ipp 224 (374)
T PRK14293 181 ------GSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPA 224 (374)
T ss_pred ------ceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCC
Confidence 233456899999999987 899999999987553 3555554
No 25
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.88 E-value=9.5e-10 Score=107.95 Aligned_cols=93 Identities=24% Similarity=0.530 Sum_probs=69.1
Q ss_pred ccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCC
Q 021514 190 NMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTS 263 (311)
Q Consensus 190 s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g 263 (311)
++++++.|++.|- |.|.. ..++..+...|..|+|+|. .+|+.|+|+|.+.....
T Consensus 141 di~~~l~lsLee~----~~G~~------------k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g---- 200 (389)
T PRK14295 141 DVESEVTLSFTEA----IDGAT------------VPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSG---- 200 (389)
T ss_pred CEEEEEEEEHHHH----hCCce------------EEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEec----
Confidence 4455555555544 55543 4566788899999999995 68999999999876531
Q ss_pred CCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514 264 NASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 264 ~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP 309 (311)
..+.+.+|+.|.|+|++ +|+.|.|.|.+... ..++.|.|
T Consensus 201 -------~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~ 243 (389)
T PRK14295 201 -------GFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPA 243 (389)
T ss_pred -------ceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCC
Confidence 12467899999999987 89999999998753 45566654
No 26
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.87 E-value=1.1e-09 Score=106.74 Aligned_cols=95 Identities=23% Similarity=0.505 Sum_probs=71.1
Q ss_pred hhccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCC
Q 021514 188 IRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIS 261 (311)
Q Consensus 188 ~~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s 261 (311)
..++++++.+++.|. |.|.. .++...+.+.|..|+|+|. .+|+.|+|+|.+....
T Consensus 118 g~di~~~l~~sLee~----~~G~~------------k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~--- 178 (372)
T PRK14300 118 GSDLKYNLTINLEEA----FHGIE------------KNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQ--- 178 (372)
T ss_pred CCCeeEEEEEEHHHH----hCCce------------EEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEee---
Confidence 345666666666655 56654 4566778899999999995 6899999999987532
Q ss_pred CCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514 262 TSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 262 ~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP 309 (311)
+..+...+|+.|.|.|++ +|++|+|.|.+... +..+.|.|
T Consensus 179 --------g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 222 (372)
T PRK14300 179 --------GFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPA 222 (372)
T ss_pred --------ceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECC
Confidence 122467799999999987 89999999998653 44555554
No 27
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=1.5e-09 Score=105.41 Aligned_cols=95 Identities=26% Similarity=0.558 Sum_probs=71.5
Q ss_pred hhccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCC
Q 021514 188 IRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIS 261 (311)
Q Consensus 188 ~~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s 261 (311)
..++++++.|++.|. |.|.. .+++..+.+.|..|+|+|. ..|+.|+|+|.+....
T Consensus 117 g~d~~~~l~lslee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--- 177 (366)
T PRK14294 117 GADLRYDLTLPFLEA----AFGTE------------KEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ--- 177 (366)
T ss_pred CCCceEEEEeeHHHh----cCCeE------------EEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEe---
Confidence 345666666666655 66654 4566778889999999996 4899999999987532
Q ss_pred CCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514 262 TSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 262 ~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP 309 (311)
+..+.+.+|+.|.|+|++ .|+.|.|.|.+... ..++.|.|
T Consensus 178 --------G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 221 (366)
T PRK14294 178 --------GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPA 221 (366)
T ss_pred --------eeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCC
Confidence 112468899999999987 89999999998643 45556654
No 28
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.85 E-value=1.6e-09 Score=105.84 Aligned_cols=97 Identities=24% Similarity=0.540 Sum_probs=72.2
Q ss_pred ccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCC
Q 021514 190 NMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTS 263 (311)
Q Consensus 190 s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g 263 (311)
++++.+.|++.|. |.|.. .+++..+.+.|..|+|+|. ..|+.|+|+|.+....+...
T Consensus 129 di~~~l~vsLee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~- 191 (386)
T PRK14289 129 DLRVKVKLNLKEI----STGVE------------KKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTIL- 191 (386)
T ss_pred CeEEEEEEEHHHh----hCCeE------------EEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEeccc-
Confidence 4555555665555 55543 5667788899999999996 58999999999987655432
Q ss_pred CCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514 264 NASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 264 ~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP 309 (311)
+..+...+|+.|.|.|++ .|+.|.|.|.+... ...+.|.|
T Consensus 192 ------G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 235 (386)
T PRK14289 192 ------GTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPA 235 (386)
T ss_pred ------ceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCC
Confidence 233468999999999987 89999999998754 44555544
No 29
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.9e-09 Score=104.73 Aligned_cols=72 Identities=25% Similarity=0.494 Sum_probs=57.9
Q ss_pred ccccccccccCccccCCCCCCCce--------eeeecCCC---C---CCCCCCCCCCCceeeCCCCCcCceeeCCCCCCc
Q 021514 230 EKKRCKYCHGSGYLACARCSSSGV--------CLSVDPIS---T---SNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCT 295 (311)
Q Consensus 230 ~~k~C~~C~GtG~v~C~~C~GSG~--------i~~~~~~s---~---g~g~c~~~~~q~~~~CptC~G~GkV~CptC~Gt 295 (311)
-.+.|+.|+|.|...|+.|+|+|. ..+....+ . .+..|+.|.+.+..+|++|+|+|+++|.+|.|+
T Consensus 186 ~v~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~gt 265 (406)
T KOG2813|consen 186 IVTFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCSGT 265 (406)
T ss_pred hhhhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcccccccCc
Confidence 456899999999999999999993 22222222 1 134689999999999999999999999999999
Q ss_pred eEEece
Q 021514 296 GMMMAS 301 (311)
Q Consensus 296 G~v~~s 301 (311)
|.++..
T Consensus 266 gsll~~ 271 (406)
T KOG2813|consen 266 GSLLNY 271 (406)
T ss_pred cceeee
Confidence 998653
No 30
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.84 E-value=1.7e-09 Score=105.56 Aligned_cols=97 Identities=22% Similarity=0.540 Sum_probs=71.0
Q ss_pred ccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCC
Q 021514 190 NMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTS 263 (311)
Q Consensus 190 s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g 263 (311)
++++++.|++.|. |.|.. .+++..+.+.|..|+|+|. .+|+.|+|+|.+.......
T Consensus 121 di~~~l~vsLed~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~-- 182 (378)
T PRK14283 121 DIYTEVEITLEEA----ASGVE------------KDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTI-- 182 (378)
T ss_pred CeEEEeeeeHHHH----hCCcc------------eEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEecc--
Confidence 4555666666555 55554 4566777889999999885 5799999999998765443
Q ss_pred CCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514 264 NASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 264 ~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP 309 (311)
++..+...+|++|.|+|+. +|..|.|.|.+... +-.+.|.|
T Consensus 183 -----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ipp 227 (378)
T PRK14283 183 -----LGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPA 227 (378)
T ss_pred -----CceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECC
Confidence 2234457899999999987 89999999998653 44444443
No 31
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.83 E-value=1.7e-09 Score=105.73 Aligned_cols=94 Identities=26% Similarity=0.603 Sum_probs=70.3
Q ss_pred hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCC
Q 021514 189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIST 262 (311)
Q Consensus 189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~ 262 (311)
.++++++.|++.|- |.|.. .+++..+.+.|..|+|+|. ..|+.|+|+|.+....
T Consensus 130 ~di~~~l~vsLee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---- 189 (382)
T PRK14291 130 EDIYQTVEISLEEA----YTGTT------------VSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRG---- 189 (382)
T ss_pred CCEEEEEEEEHHHh----hCCEE------------EEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEec----
Confidence 34555666665554 56654 4566778899999999995 6899999999987652
Q ss_pred CCCCCCCCCCCceeeCCCCCcCcee--eCCCCCCceEEece-eeCCCcCC
Q 021514 263 SNASNGPLRVPTTQRCPNCSGAGKV--MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 263 g~g~c~~~~~q~~~~CptC~G~GkV--~CptC~GtG~v~~s-EhD~riDP 309 (311)
+..+.+.+|+.|+|+|.+ .|+.|+|.|.+... ...+.|.|
T Consensus 190 -------g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 232 (382)
T PRK14291 190 -------GFFRISQTCPTCGGEGVLREPCSKCNGRGLVIKKETIKVRIPP 232 (382)
T ss_pred -------ceEEEEecCCCCCCceEEccCCCCCCCCceEEeeeEEEEEeCC
Confidence 123468899999999976 89999999998753 45555554
No 32
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.78 E-value=3.3e-09 Score=103.08 Aligned_cols=98 Identities=22% Similarity=0.484 Sum_probs=71.3
Q ss_pred hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc-------ccCCCCCCCceeeeecCCC
Q 021514 189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY-------LACARCSSSGVCLSVDPIS 261 (311)
Q Consensus 189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~-------v~C~~C~GSG~i~~~~~~s 261 (311)
.++++.+.+++.|. |.|.. ..+...+...|..|+|+|. .+|..|+|+|.+.......
T Consensus 113 ~d~~~~l~~sLee~----~~G~~------------~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~ 176 (371)
T PRK14292 113 DDLETEARITLEQA----RAGEE------------VEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTI 176 (371)
T ss_pred CCeEEEEeccHHHH----cCCeE------------EEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEecc
Confidence 35556666666555 56654 3456677889999999985 5799999999987654432
Q ss_pred CCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514 262 TSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 262 ~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP 309 (311)
. +..+...+|+.|+|.|+. .|+.|.|.|.+... +..+.|.|
T Consensus 177 ~-------g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 221 (371)
T PRK14292 177 F-------GVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPR 221 (371)
T ss_pred C-------ceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECC
Confidence 1 233457899999999987 89999999998754 35555544
No 33
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3.1e-07 Score=89.75 Aligned_cols=100 Identities=18% Similarity=0.454 Sum_probs=73.6
Q ss_pred hhccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc-----ccCCCCCCCceeeeecCCCC
Q 021514 188 IRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY-----LACARCSSSGVCLSVDPIST 262 (311)
Q Consensus 188 ~~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~-----v~C~~C~GSG~i~~~~~~s~ 262 (311)
..++..++.+++.|. |.|+. .....+....|+.|+|.|. ..|..|.|+|......+++.
T Consensus 100 g~~~~~~~~~~Le~~----y~G~s------------~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gP 163 (337)
T KOG0712|consen 100 GKDVVHQLKVTLEEL----YMGKS------------KKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGP 163 (337)
T ss_pred CCCceEEEEEEHHHh----hcCCc------------cceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccc
Confidence 555555555555554 55543 3345677889999999885 47999999999988776653
Q ss_pred CCCCCCCCCCCceeeCCCCCcCcee-----eCCCCCCceEEec-eeeCCCcCC
Q 021514 263 SNASNGPLRVPTTQRCPNCSGAGKV-----MCPSCLCTGMMMA-SEHDPRIDP 309 (311)
Q Consensus 263 g~g~c~~~~~q~~~~CptC~G~GkV-----~CptC~GtG~v~~-sEhD~riDP 309 (311)
+ +..+.+.+|..|+|+|.. .|+.|.|++.+.. .-.++.|.|
T Consensus 164 g------~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~ 210 (337)
T KOG0712|consen 164 G------MVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEP 210 (337)
T ss_pred c------ccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccC
Confidence 1 456778999999999997 9999999999863 345555544
No 34
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=98.16 E-value=1.2e-06 Score=90.75 Aligned_cols=70 Identities=31% Similarity=0.695 Sum_probs=49.8
Q ss_pred ccccccccCcc-----ccCCCCCCCceeeeecCC--CCCCCCCCCCCCCceeeCCCCCcCcee----eCCCCCCceEEec
Q 021514 232 KRCKYCHGSGY-----LACARCSSSGVCLSVDPI--STSNASNGPLRVPTTQRCPNCSGAGKV----MCPSCLCTGMMMA 300 (311)
Q Consensus 232 k~C~~C~GtG~-----v~C~~C~GSG~i~~~~~~--s~g~g~c~~~~~q~~~~CptC~G~GkV----~CptC~GtG~v~~ 300 (311)
+.|+.|+|+|+ ..|+.|+|+|.....+.- +.......-.......+|+.|.|.|++ .|+.|.|+|++.+
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~ 82 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVLT 82 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEEe
Confidence 58999999998 479999999998543321 111111112333456799999999988 7999999999874
Q ss_pred e
Q 021514 301 S 301 (311)
Q Consensus 301 s 301 (311)
-
T Consensus 83 c 83 (715)
T COG1107 83 C 83 (715)
T ss_pred e
Confidence 3
No 35
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.87 E-value=1.4e-05 Score=60.51 Aligned_cols=39 Identities=36% Similarity=1.020 Sum_probs=28.6
Q ss_pred CCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---------------eCCCCCCceEEe
Q 021514 245 CARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---------------MCPSCLCTGMMM 299 (311)
Q Consensus 245 C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---------------~CptC~GtG~v~ 299 (311)
|+.|+|+|.... ....+|+.|+|+|++ .|+.|.|+|+++
T Consensus 1 C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 1 CPKCNGTGAKPG----------------KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII 54 (66)
T ss_dssp -CCCTTTSB-ST----------------TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred CCcCCCcccCCC----------------CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence 899999998631 246899999999976 699999999997
No 36
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=3.5e-05 Score=76.41 Aligned_cols=42 Identities=36% Similarity=0.957 Sum_probs=36.1
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-------------eCCCCCCceEEe
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-------------MCPSCLCTGMMM 299 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-------------~CptC~GtG~v~ 299 (311)
...|..|+|+|.... ....+|++|+|+|.+ +|++|.|+|.+.
T Consensus 142 ~~~C~~C~GsGak~g----------------t~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i 196 (371)
T COG0484 142 SVTCSTCHGSGAKPG----------------TDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII 196 (371)
T ss_pred eeECCcCCCCCCCCC----------------CCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC
Confidence 479999999998752 247899999999964 799999999997
No 37
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.44 E-value=8.3e-05 Score=77.49 Aligned_cols=45 Identities=38% Similarity=1.138 Sum_probs=36.0
Q ss_pred ccccccccccCcc------------------------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCc
Q 021514 230 EKKRCKYCHGSGY------------------------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAG 285 (311)
Q Consensus 230 ~~k~C~~C~GtG~------------------------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~G 285 (311)
..+.|+.|+|+|. .+|+.|+|.|.+.. ..+|+.|+|+|
T Consensus 17 ~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v------------------~~~c~~c~G~g 78 (715)
T COG1107 17 GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV------------------YDTCPECGGTG 78 (715)
T ss_pred eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE------------------EeecccCCCce
Confidence 3467999999885 37999999998874 57899999999
Q ss_pred ee-eCCCC
Q 021514 286 KV-MCPSC 292 (311)
Q Consensus 286 kV-~CptC 292 (311)
++ +|..|
T Consensus 79 kv~~c~~c 86 (715)
T COG1107 79 KVLTCDIC 86 (715)
T ss_pred eEEeeccc
Confidence 87 56666
No 38
>PRK14279 chaperone protein DnaJ; Provisional
Probab=97.07 E-value=0.00036 Score=69.05 Aligned_cols=43 Identities=30% Similarity=0.798 Sum_probs=35.4
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEec
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMMA 300 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~~ 300 (311)
...|..|+|+|.... ....+|+.|+|+|.+ +|+.|.|+|++..
T Consensus 173 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~ 226 (392)
T PRK14279 173 PAPCTTCHGSGARPG----------------TSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE 226 (392)
T ss_pred cccCCCCccccccCC----------------CCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC
Confidence 468999999998642 135789999999975 7999999999864
No 39
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00098 Score=64.07 Aligned_cols=54 Identities=28% Similarity=0.618 Sum_probs=44.1
Q ss_pred cccccccccccCccccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCceeeCCCCC
Q 021514 229 QEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCL 293 (311)
Q Consensus 229 q~~k~C~~C~GtG~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV~CptC~ 293 (311)
...-.|..|.|.++++|..|||+=.+... . .......+|+.|+=.|-+.|+.|.
T Consensus 227 ~~~~~C~~CGg~rFlpC~~C~GS~kv~~~--~---------~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 227 EGGGVCESCGGARFLPCSNCHGSCKVHEE--E---------EDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CCCCcCCCcCCcceEecCCCCCceeeeee--c---------cCCCcEEECcccCCCCceeCCccC
Confidence 34478999999999999999999888752 1 112357899999999999999996
No 40
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.93 E-value=0.00055 Score=67.61 Aligned_cols=43 Identities=37% Similarity=0.864 Sum_probs=35.1
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEec
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMMA 300 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~~ 300 (311)
...|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|++..
T Consensus 158 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~ 211 (391)
T PRK14284 158 YKSCDACSGSGANSS----------------QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT 211 (391)
T ss_pred eccCCCCcccccCCC----------------CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC
Confidence 468999999998542 235789999999984 7999999998753
No 41
>PRK14296 chaperone protein DnaJ; Provisional
Probab=96.89 E-value=0.00061 Score=66.99 Aligned_cols=76 Identities=24% Similarity=0.509 Sum_probs=50.5
Q ss_pred hhccCcccccccCCceeeeeeccchhhhhhhhhhhcceeec------cccccccccccCccc---------------cCC
Q 021514 188 IRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQ------QEKKRCKYCHGSGYL---------------ACA 246 (311)
Q Consensus 188 ~~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~------q~~k~C~~C~GtG~v---------------~C~ 246 (311)
..++++++.|++.|- |.|...-+. -...+.|..++. .....|..|+|+|.+ +|+
T Consensus 122 g~di~~~l~ltlee~----~~G~~~~i~-~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~ 196 (372)
T PRK14296 122 GQSVSLDIYLTFKEL----LFGVDKIIE-LDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCN 196 (372)
T ss_pred CCCeEEEeeccHHHh----hCCeeEEEE-EeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCC
Confidence 346667777777665 777653211 111122333333 235789999999963 799
Q ss_pred CCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 247 RCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 247 ~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
.|+|+|.+. ...|+.|.|.|.+
T Consensus 197 ~C~G~G~~~-------------------~~~C~~C~G~g~v 218 (372)
T PRK14296 197 VCNGAGKII-------------------KNKCKNCKGKGKY 218 (372)
T ss_pred CcCCcceee-------------------cccccCCCCceEE
Confidence 999999885 3569999999965
No 42
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.86 E-value=0.00064 Score=66.73 Aligned_cols=38 Identities=32% Similarity=0.882 Sum_probs=31.9
Q ss_pred cccccccccCccc-----------cCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 231 KKRCKYCHGSGYL-----------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 231 ~k~C~~C~GtG~v-----------~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
...|..|+|+|.+ +|+.|+|.|.+. ..+|+.|.|+|.+
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 210 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-------------------KNPCKKCHGMGRY 210 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-------------------CCCCCCCCCceEE
Confidence 4689999999863 799999999885 3569999999975
No 43
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.84 E-value=0.00085 Score=65.71 Aligned_cols=43 Identities=33% Similarity=0.829 Sum_probs=34.7
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---------------eCCCCCCceEEec
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---------------MCPSCLCTGMMMA 300 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---------------~CptC~GtG~v~~ 300 (311)
...|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|++..
T Consensus 152 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 209 (369)
T PRK14282 152 YETCPHCGGTGVEPG----------------SGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG 209 (369)
T ss_pred cccCCCCCccCCCCC----------------CCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC
Confidence 368999999998542 135789999999964 6999999999853
No 44
>PRK14301 chaperone protein DnaJ; Provisional
Probab=96.83 E-value=0.00074 Score=66.39 Aligned_cols=43 Identities=30% Similarity=0.855 Sum_probs=34.9
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEec
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMMA 300 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~~ 300 (311)
...|..|+|+|.... ....+|+.|+|+|.+ +|+.|.|+|++..
T Consensus 144 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~ 197 (373)
T PRK14301 144 NVTCDDCGGSGAAPG----------------TSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT 197 (373)
T ss_pred cccCCCCCCcccCCC----------------CCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC
Confidence 368999999998642 124689999999975 7999999999863
No 45
>PRK14298 chaperone protein DnaJ; Provisional
Probab=96.83 E-value=0.00066 Score=66.90 Aligned_cols=75 Identities=24% Similarity=0.532 Sum_probs=50.2
Q ss_pred hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeecc------ccccccccccCcc---------------ccCCC
Q 021514 189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQ------EKKRCKYCHGSGY---------------LACAR 247 (311)
Q Consensus 189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q------~~k~C~~C~GtG~---------------v~C~~ 247 (311)
.++++++.|++.|- |.|..+-+. -...+.|..+... ....|..|+|+|. .+|+.
T Consensus 115 ~di~~~l~vslee~----~~G~~~~i~-~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 189 (377)
T PRK14298 115 SDLRYDLYITLEEA----AFGVRKDID-VPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCST 189 (377)
T ss_pred CCEEEEEEEEHHHh----hCCeEEEEE-EEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCC
Confidence 45666777777665 777764311 1112223334332 3478999999995 37999
Q ss_pred CCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 248 CSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 248 C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
|+|+|.+. ...|+.|.|+|.+
T Consensus 190 C~G~G~~~-------------------~~~C~~C~G~g~v 210 (377)
T PRK14298 190 CHGRGQVI-------------------ESPCPVCSGTGKV 210 (377)
T ss_pred CCCCCccc-------------------CCCCCCCCCccEE
Confidence 99999874 3569999999975
No 46
>PRK14295 chaperone protein DnaJ; Provisional
Probab=96.83 E-value=0.00084 Score=66.39 Aligned_cols=43 Identities=37% Similarity=0.891 Sum_probs=35.2
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEec
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMMA 300 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~~ 300 (311)
...|..|+|+|.... ....+|+.|.|+|.+ .|+.|.|+|++..
T Consensus 166 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~ 219 (389)
T PRK14295 166 QAPCPACSGTGAKNG----------------TTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD 219 (389)
T ss_pred cccCCCCcccccCCC----------------CCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec
Confidence 368999999998642 135789999999974 7999999999864
No 47
>PRK14286 chaperone protein DnaJ; Provisional
Probab=96.83 E-value=0.00081 Score=66.09 Aligned_cols=43 Identities=30% Similarity=0.947 Sum_probs=34.8
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEec
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMMA 300 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~~ 300 (311)
...|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|++..
T Consensus 150 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~ 203 (372)
T PRK14286 150 LESCVDCNGSGASKG----------------SSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS 203 (372)
T ss_pred cccCCCCcCCCcCCC----------------CCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec
Confidence 368999999998542 124789999999965 6999999999863
No 48
>PRK14297 chaperone protein DnaJ; Provisional
Probab=96.78 E-value=0.00093 Score=65.70 Aligned_cols=43 Identities=23% Similarity=0.730 Sum_probs=34.7
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---------------eCCCCCCceEEec
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---------------MCPSCLCTGMMMA 300 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---------------~CptC~GtG~v~~ 300 (311)
...|..|+|+|.... ....+|+.|+|+|++ +|+.|.|+|.+..
T Consensus 148 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 205 (380)
T PRK14297 148 NENCETCNGTGAKPG----------------TSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE 205 (380)
T ss_pred eccCCCcccccccCC----------------CcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC
Confidence 368999999998631 135789999999964 6999999999854
No 49
>PRK14276 chaperone protein DnaJ; Provisional
Probab=96.76 E-value=0.00084 Score=66.09 Aligned_cols=43 Identities=28% Similarity=0.671 Sum_probs=34.5
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---------------eCCCCCCceEEec
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---------------MCPSCLCTGMMMA 300 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---------------~CptC~GtG~v~~ 300 (311)
...|..|+|+|.... ....+|+.|+|+|.+ +|+.|.|+|++..
T Consensus 146 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 203 (380)
T PRK14276 146 EATCHTCNGSGAKPG----------------TSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK 203 (380)
T ss_pred cccCCCCcCcccCCC----------------CCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc
Confidence 468999999997542 135689999999864 6999999999863
No 50
>PRK14278 chaperone protein DnaJ; Provisional
Probab=96.76 E-value=0.00085 Score=66.06 Aligned_cols=38 Identities=32% Similarity=0.867 Sum_probs=31.7
Q ss_pred cccccccccCcc---------------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 231 KKRCKYCHGSGY---------------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 231 ~k~C~~C~GtG~---------------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
...|..|+|+|. .+|+.|+|.|.+. ...|+.|.|+|.+
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 208 (378)
T PRK14278 156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-------------------PDPCHECAGDGRV 208 (378)
T ss_pred ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-------------------CCCCCCCCCceeE
Confidence 468999999985 3799999999875 3569999999975
No 51
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.76 E-value=0.00099 Score=65.16 Aligned_cols=43 Identities=35% Similarity=0.936 Sum_probs=34.8
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEec
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMMA 300 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~~ 300 (311)
...|..|+|+|.... .....|+.|+|+|.+ +|+.|.|+|+...
T Consensus 142 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~ 195 (371)
T PRK10767 142 LVTCDTCHGSGAKPG----------------TSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK 195 (371)
T ss_pred cccCCCCCCcccCCC----------------CCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC
Confidence 468999999997642 134689999999976 5999999999853
No 52
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.75 E-value=0.00084 Score=65.83 Aligned_cols=38 Identities=32% Similarity=0.931 Sum_probs=31.8
Q ss_pred cccccccccCcc-----------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 231 KKRCKYCHGSGY-----------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 231 ~k~C~~C~GtG~-----------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
...|..|+|+|. .+|+.|+|.|.+. ..+|+.|.|+|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 211 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-------------------SNPCKSCKGKGSL 211 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCccccc-------------------CCCCCCCCCCCEE
Confidence 468999999985 3799999999874 3579999999965
No 53
>PRK14280 chaperone protein DnaJ; Provisional
Probab=96.68 E-value=0.00099 Score=65.50 Aligned_cols=75 Identities=25% Similarity=0.579 Sum_probs=49.4
Q ss_pred hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeec------cccccccccccCcc---------------ccCCC
Q 021514 189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQ------QEKKRCKYCHGSGY---------------LACAR 247 (311)
Q Consensus 189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~------q~~k~C~~C~GtG~---------------v~C~~ 247 (311)
.++++++.+++.|- |.|...-+. -...+.|..++. .....|..|+|+|. .+|+.
T Consensus 117 ~di~~~l~vtLee~----~~G~~~~i~-~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 191 (376)
T PRK14280 117 ADLQYTMTLTFEEA----VFGKEKEIE-IPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPH 191 (376)
T ss_pred cCEEEEEEEEHHHH----hCCceeEEE-EeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCC
Confidence 35566666666665 777653311 111222333333 23578999999985 37999
Q ss_pred CCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 248 CSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 248 C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
|+|+|.+. ...|+.|.|+|.+
T Consensus 192 C~G~G~~~-------------------~~~C~~C~G~g~v 212 (376)
T PRK14280 192 CNGTGQEI-------------------KEKCPTCHGKGKV 212 (376)
T ss_pred CCCCCcee-------------------cCCCCCCCCceEE
Confidence 99999875 3569999999975
No 54
>PRK14287 chaperone protein DnaJ; Provisional
Probab=96.68 E-value=0.001 Score=65.32 Aligned_cols=43 Identities=28% Similarity=0.760 Sum_probs=34.4
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---------------eCCCCCCceEEec
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---------------MCPSCLCTGMMMA 300 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---------------~CptC~GtG~v~~ 300 (311)
...|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|++..
T Consensus 138 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 195 (371)
T PRK14287 138 EETCGTCHGSGAKPG----------------TKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK 195 (371)
T ss_pred eccCCCCCCcccCCC----------------CCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc
Confidence 368999999997631 135789999999964 6999999999853
No 55
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=96.66 E-value=0.0012 Score=66.33 Aligned_cols=42 Identities=29% Similarity=0.627 Sum_probs=33.6
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCce---------------eeCCCCCCceEEec
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGK---------------VMCPSCLCTGMMMA 300 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~Gk---------------V~CptC~GtG~v~~ 300 (311)
...|..|+|+|.... ...+|+.|+|+|. ..|+.|.|+|++..
T Consensus 150 ~~~C~~C~G~G~~~~-----------------~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~ 206 (421)
T PTZ00037 150 DVICANCEGHGGPKD-----------------AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP 206 (421)
T ss_pred cccccccCCCCCCCC-----------------CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc
Confidence 368999999996321 2468999999994 27999999999864
No 56
>PRK14277 chaperone protein DnaJ; Provisional
Probab=96.62 E-value=0.0013 Score=64.78 Aligned_cols=43 Identities=30% Similarity=0.786 Sum_probs=34.8
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---------------eCCCCCCceEEec
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---------------MCPSCLCTGMMMA 300 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---------------~CptC~GtG~v~~ 300 (311)
...|..|+|+|.... ....+|+.|.|+|.+ +|+.|.|+|++..
T Consensus 155 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 212 (386)
T PRK14277 155 FEKCDVCKGSGAKPG----------------SKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT 212 (386)
T ss_pred eccCCCCCCCCcCCC----------------CCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc
Confidence 468999999998642 135789999999864 6999999999863
No 57
>PRK14289 chaperone protein DnaJ; Provisional
Probab=96.62 E-value=0.0011 Score=65.20 Aligned_cols=39 Identities=33% Similarity=0.947 Sum_probs=31.8
Q ss_pred ccccccccccCccc---------------cCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 230 EKKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 230 ~~k~C~~C~GtG~v---------------~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
....|+.|+|+|.+ +|+.|+|.|.+. ...|+.|+|+|.+
T Consensus 170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 223 (386)
T PRK14289 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-------------------KKKCKKCGGEGIV 223 (386)
T ss_pred CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-------------------CcCCCCCCCCcEE
Confidence 35689999999863 699999999874 3579999999965
No 58
>PRK14288 chaperone protein DnaJ; Provisional
Probab=96.60 E-value=0.0014 Score=64.40 Aligned_cols=39 Identities=28% Similarity=0.798 Sum_probs=32.3
Q ss_pred ccccccccccCcc-----------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 230 EKKRCKYCHGSGY-----------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 230 ~~k~C~~C~GtG~-----------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
....|..|+|+|. .+|+.|+|+|.+. ...|+.|.|.|.+
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 204 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-------------------KTPCQACKGKTYI 204 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-------------------cccCccCCCcceE
Confidence 3468999999996 3699999999874 3569999999965
No 59
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0018 Score=63.89 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=31.0
Q ss_pred ccCCCCCCCceeeeecCCCCCC--------CCCCCCCC------CceeeCCCCCcCceeeCCCCCCceEEec
Q 021514 243 LACARCSSSGVCLSVDPISTSN--------ASNGPLRV------PTTQRCPNCSGAGKVMCPSCLCTGMMMA 300 (311)
Q Consensus 243 v~C~~C~GSG~i~~~~~~s~g~--------g~c~~~~~------q~~~~CptC~G~GkV~CptC~GtG~v~~ 300 (311)
..|..|.|+|..++....+.+. ..|..|.+ .....|..|+|+|+..|++|+|.|.+..
T Consensus 188 ~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C 259 (406)
T KOG2813|consen 188 TFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPC 259 (406)
T ss_pred hhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCccc
Confidence 4566666666666654443331 12222222 1234566666666666666666666654
No 60
>PRK14294 chaperone protein DnaJ; Provisional
Probab=96.57 E-value=0.0016 Score=63.82 Aligned_cols=42 Identities=33% Similarity=0.888 Sum_probs=34.4
Q ss_pred ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEec
Q 021514 243 LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMMA 300 (311)
Q Consensus 243 v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~~ 300 (311)
..|..|+|+|..... ...+|+.|.|.|.+ .|+.|.|+|++..
T Consensus 145 ~~C~~C~G~G~~~~~----------------~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~ 197 (366)
T PRK14294 145 ETCEECHGSGCEPGT----------------SPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV 197 (366)
T ss_pred ccCCCCCCccccCCC----------------CcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC
Confidence 689999999986421 25789999999964 7999999999853
No 61
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.54 E-value=0.0023 Score=54.05 Aligned_cols=37 Identities=35% Similarity=0.783 Sum_probs=28.8
Q ss_pred ccccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee------------eCCCCCCceEEe
Q 021514 241 GYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV------------MCPSCLCTGMMM 299 (311)
Q Consensus 241 G~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV------------~CptC~GtG~v~ 299 (311)
....|..|+|+|. .+|+.|+|+|.+ .|++|.|+|+..
T Consensus 40 ~~v~C~~C~GsG~----------------------~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~~ 88 (111)
T PLN03165 40 NTQPCFPCSGTGA----------------------QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLT 88 (111)
T ss_pred cCCCCCCCCCCCC----------------------cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcceee
Confidence 4578999999885 257777777653 799999999865
No 62
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.46 E-value=0.0017 Score=59.08 Aligned_cols=26 Identities=35% Similarity=0.942 Sum_probs=12.2
Q ss_pred eeCCCCCcCcee-----eCCCCCCceEEece
Q 021514 276 QRCPNCSGAGKV-----MCPSCLCTGMMMAS 301 (311)
Q Consensus 276 ~~CptC~G~GkV-----~CptC~GtG~v~~s 301 (311)
.+|+.|+|+|++ +|+.|+|+|++..+
T Consensus 100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~ 130 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQRECDTCAGTGRFRPT 130 (186)
T ss_pred CcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence 344444444443 25555555555433
No 63
>PRK14290 chaperone protein DnaJ; Provisional
Probab=96.45 E-value=0.0019 Score=63.20 Aligned_cols=38 Identities=37% Similarity=0.980 Sum_probs=31.5
Q ss_pred cccccccccCcc---------------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 231 KKRCKYCHGSGY---------------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 231 ~k~C~~C~GtG~---------------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
...|+.|+|+|. .+|+.|+|.|.+. ...|+.|.|+|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 217 (365)
T PRK14290 165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-------------------EEKCPRCNGTGTV 217 (365)
T ss_pred CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-------------------cCCCCCCCCceeE
Confidence 468999999994 4799999999874 4679999999975
No 64
>PRK14281 chaperone protein DnaJ; Provisional
Probab=96.41 E-value=0.002 Score=63.88 Aligned_cols=75 Identities=24% Similarity=0.551 Sum_probs=48.4
Q ss_pred hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeec-----cccccccccccCcc---------------ccCCCC
Q 021514 189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQ-----QEKKRCKYCHGSGY---------------LACARC 248 (311)
Q Consensus 189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~-----q~~k~C~~C~GtG~---------------v~C~~C 248 (311)
.++++.+.|++.|- |.|...-+-. ...+.|..+.. .....|..|+|+|. .+|..|
T Consensus 137 ~di~~~l~vtLee~----~~G~~~~i~~-~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 211 (397)
T PRK14281 137 TDLKIRLKLTLEEI----AKGVEKTLKI-KKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTC 211 (397)
T ss_pred CCEEEEEEeEHHHH----hCCeEEEEEE-EeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCC
Confidence 35566666766665 6776532111 11112222222 24578999999995 369999
Q ss_pred CCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 249 SSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 249 ~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
+|+|.+. ...|+.|.|.|.+
T Consensus 212 ~G~G~~~-------------------~~~C~~C~G~g~v 231 (397)
T PRK14281 212 GGEGRVV-------------------KDRCPACYGEGIK 231 (397)
T ss_pred cceeeee-------------------CCCCCCCCCCccE
Confidence 9999885 3569999999975
No 65
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=96.40 E-value=0.002 Score=62.52 Aligned_cols=38 Identities=34% Similarity=0.947 Sum_probs=31.5
Q ss_pred cccccccccCcc---------------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 231 KKRCKYCHGSGY---------------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 231 ~k~C~~C~GtG~---------------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
...|..|+|+|. .+|..|+|+|.+. ...|+.|.|.|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 212 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-------------------KEPCSTCKGKGRV 212 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-------------------CCCCCCCCCCcEe
Confidence 568999999984 3799999999875 2469999999975
No 66
>PRK14291 chaperone protein DnaJ; Provisional
Probab=96.35 E-value=0.0026 Score=62.64 Aligned_cols=41 Identities=32% Similarity=0.973 Sum_probs=33.4
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEE
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMM 298 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v 298 (311)
...|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|.+
T Consensus 156 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~ 207 (382)
T PRK14291 156 YVPCEACGGTGYDPG----------------SGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL 207 (382)
T ss_pred eccCCCCccccCCCC----------------CCCccCCCCCCceEEEEecceEEEEecCCCCCCceEE
Confidence 468999999998542 135789999999975 79999999964
No 67
>PRK14293 chaperone protein DnaJ; Provisional
Probab=96.26 E-value=0.0035 Score=61.60 Aligned_cols=43 Identities=35% Similarity=0.821 Sum_probs=34.7
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---------------eCCCCCCceEEec
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---------------MCPSCLCTGMMMA 300 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---------------~CptC~GtG~v~~ 300 (311)
...|..|+|+|.... ....+|+.|.|.|.+ +|+.|.|+|++..
T Consensus 143 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 200 (374)
T PRK14293 143 LETCETCRGSGAKPG----------------TGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE 200 (374)
T ss_pred cccCCCCCCcCCCCC----------------CCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec
Confidence 468999999997542 135789999999974 6999999999853
No 68
>PRK14283 chaperone protein DnaJ; Provisional
Probab=96.05 E-value=0.0038 Score=61.42 Aligned_cols=39 Identities=38% Similarity=0.946 Sum_probs=30.5
Q ss_pred ccccccccccCccc---------------cCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 230 EKKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 230 ~~k~C~~C~GtG~v---------------~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
....|..|+|+|.+ +|..|+|+|... ..+|..|.|+|.+
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 215 (378)
T PRK14283 162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-------------------EKPCSNCHGKGVV 215 (378)
T ss_pred CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-------------------CCCCCCCCCceee
Confidence 34679999998863 599999999874 3569999998865
No 69
>PRK14292 chaperone protein DnaJ; Provisional
Probab=96.05 E-value=0.0039 Score=61.01 Aligned_cols=38 Identities=34% Similarity=0.934 Sum_probs=31.1
Q ss_pred cccccccccCccc---------------cCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 231 KKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 231 ~k~C~~C~GtG~v---------------~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
...|..|+|+|.+ +|..|+|.|... ...|+.|.|+|.+
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 209 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-------------------TDPCTVCRGRGRT 209 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-------------------CCCCCCCCCceEE
Confidence 5689999999863 699999999874 3679999999865
No 70
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.84 E-value=0.0096 Score=52.12 Aligned_cols=50 Identities=26% Similarity=0.679 Sum_probs=38.2
Q ss_pred ccccccccccCccccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCceeeC
Q 021514 230 EKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMC 289 (311)
Q Consensus 230 ~~k~C~~C~GtG~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV~C 289 (311)
....|..|.|.+.++|..|+|+=.+...+.. ......+|+.|+=.|-++|
T Consensus 98 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~----------~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 98 GGGVCEGCGGARFVPCSECNGSCKVFAENAT----------AAGGFLRCPECNENGLVRC 147 (147)
T ss_pred CCCCCCCCCCcCeEECCCCCCcceEEeccCc----------ccccEEECCCCCccccccC
Confidence 3457999999999999999999988754311 1124678888888887776
No 71
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.45 E-value=0.0092 Score=54.45 Aligned_cols=26 Identities=27% Similarity=0.848 Sum_probs=17.9
Q ss_pred cccccccccCccc-----cCCCCCCCceeee
Q 021514 231 KKRCKYCHGSGYL-----ACARCSSSGVCLS 256 (311)
Q Consensus 231 ~k~C~~C~GtG~v-----~C~~C~GSG~i~~ 256 (311)
...|+.|+|+|.. +|+.|+|+|.+..
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRP 129 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence 4577777777752 4777777777654
No 72
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.008 Score=57.69 Aligned_cols=66 Identities=26% Similarity=0.556 Sum_probs=48.4
Q ss_pred eeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCc
Q 021514 225 NVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCT 295 (311)
Q Consensus 225 nvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~Gt 295 (311)
.........|..|.|.|. ..|..|+|+|.......... ...+|..|.|.|.+ .|..|.|.
T Consensus 158 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-----------~~~~~~~c~~~~~~~~~~c~~~~g~ 226 (288)
T KOG0715|consen 158 RISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPF-----------ILYTCSYCLGRGLVLRDNCQACSGA 226 (288)
T ss_pred ceEEEeecccccccCcCcccccccccchhhhCcccccccccCCc-----------ceeecccccccceeccchHHHhhcc
Confidence 344556679999999985 58999999996654222110 11289999999998 69999999
Q ss_pred eEEece
Q 021514 296 GMMMAS 301 (311)
Q Consensus 296 G~v~~s 301 (311)
|++...
T Consensus 227 ~~v~~~ 232 (288)
T KOG0715|consen 227 GQVRRA 232 (288)
T ss_pred hhhhhh
Confidence 965433
No 73
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=92.20 E-value=0.2 Score=49.10 Aligned_cols=38 Identities=26% Similarity=0.657 Sum_probs=31.4
Q ss_pred CceeeCCCCCcCcee---------------eCCCCCCceEEeceeeCCCcCCC
Q 021514 273 PTTQRCPNCSGAGKV---------------MCPSCLCTGMMMASEHDPRIDPF 310 (311)
Q Consensus 273 q~~~~CptC~G~GkV---------------~CptC~GtG~v~~sEhD~riDPf 310 (311)
..+..|+.|+-.+++ .|.+|++-=++...+.|+.+||+
T Consensus 224 ~~R~~C~~Cg~~~~l~y~~~~~~~~~~r~e~C~~C~~YlK~~~~~~d~~~~p~ 276 (309)
T PRK03564 224 VVRVKCSNCEQSGKLHYWSLDSEQAAVKAESCGDCGTYLKILYQEKDPKVEAV 276 (309)
T ss_pred ccCccCCCCCCCCceeeeeecCCCcceEeeecccccccceecccccCCCCCcc
Confidence 347789999866543 69999999888889999999997
No 74
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=85.19 E-value=0.81 Score=40.15 Aligned_cols=11 Identities=36% Similarity=1.047 Sum_probs=6.4
Q ss_pred eCCCCCCceEE
Q 021514 288 MCPSCLCTGMM 298 (311)
Q Consensus 288 ~CptC~GtG~v 298 (311)
+|+.|.-.|.+
T Consensus 135 rC~~Cnengl~ 145 (147)
T cd03031 135 RCPECNENGLV 145 (147)
T ss_pred ECCCCCccccc
Confidence 56666655544
No 75
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=85.18 E-value=0.25 Score=46.87 Aligned_cols=37 Identities=30% Similarity=0.693 Sum_probs=23.5
Q ss_pred ceeeCCCCCcCcee----------------eCCCCCCceEEeceeeCCCcCCC
Q 021514 274 TTQRCPNCSGAGKV----------------MCPSCLCTGMMMASEHDPRIDPF 310 (311)
Q Consensus 274 ~~~~CptC~G~GkV----------------~CptC~GtG~v~~sEhD~riDPf 310 (311)
.+..|+.|+-.... .|.+|++.=++...+.|+.+||+
T Consensus 210 ~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~YlK~vd~~~~~~~~~~ 262 (290)
T PF04216_consen 210 VRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGSYLKTVDREKDPELDPV 262 (290)
T ss_dssp -TTS-TTT---SS-EEE--------SEEEEEETTTTEEEEEEETTT-TT--HH
T ss_pred cCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccchHHHHhhhhCcccchh
Confidence 35689999866432 79999998888888999999884
No 76
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=84.89 E-value=0.84 Score=49.43 Aligned_cols=48 Identities=27% Similarity=0.652 Sum_probs=35.1
Q ss_pred ccccccccccCcc-ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee--eCCCCCCc
Q 021514 230 EKKRCKYCHGSGY-LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV--MCPSCLCT 295 (311)
Q Consensus 230 ~~k~C~~C~GtG~-v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV--~CptC~Gt 295 (311)
....|+.| |+ ..|++|+..=.... ..+...|+.|+-...+ .||.|.++
T Consensus 434 ~~l~C~~C---g~v~~Cp~Cd~~lt~H~---------------~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 434 PLLLCRDC---GYIAECPNCDSPLTLHK---------------ATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred ceeecccC---CCcccCCCCCcceEEec---------------CCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 35689999 55 58999988744332 1257889999887665 79999887
No 77
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=84.69 E-value=0.75 Score=44.99 Aligned_cols=37 Identities=24% Similarity=0.583 Sum_probs=29.6
Q ss_pred ceeeCCCCCcCcee-----------------eCCCCCCceEEeceeeCCCcCCC
Q 021514 274 TTQRCPNCSGAGKV-----------------MCPSCLCTGMMMASEHDPRIDPF 310 (311)
Q Consensus 274 ~~~~CptC~G~GkV-----------------~CptC~GtG~v~~sEhD~riDPf 310 (311)
.+..|+.|+-..++ .|.+|++-=++...+.|+.+||+
T Consensus 223 ~R~~C~~Cg~~~~l~y~~~e~~~~~~~~r~e~C~~C~~YlK~~~~~~d~~~~~~ 276 (305)
T TIGR01562 223 VRVKCSHCEESKHLAYLSLEHDAEKAVLKAETCDSCQGYLKILYQEKDPHADAV 276 (305)
T ss_pred cCccCCCCCCCCceeeEeecCCCCCcceEEeeccccccchhhhccccCCccCch
Confidence 46778888754321 69999998888888999999997
No 78
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=83.93 E-value=0.56 Score=44.61 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=20.6
Q ss_pred eeeCCCCCcCceeeCCCCCCceEEec
Q 021514 275 TQRCPNCSGAGKVMCPSCLCTGMMMA 300 (311)
Q Consensus 275 ~~~CptC~G~GkV~CptC~GtG~v~~ 300 (311)
..+|..-.|++.++||+|+|+|++..
T Consensus 27 ~~py~e~~g~~~vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 27 SFPYVEFTGRDSVTCPTCQGTGRIPR 52 (238)
T ss_pred cCccccccCCCCCcCCCCcCCccCCc
Confidence 45677778888889999999998854
No 79
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=80.82 E-value=0.78 Score=45.57 Aligned_cols=73 Identities=33% Similarity=0.644 Sum_probs=44.9
Q ss_pred ccchhhhccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc----------------ccCC
Q 021514 183 SYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY----------------LACA 246 (311)
Q Consensus 183 ~y~df~~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~----------------v~C~ 246 (311)
+++|+....+.|+.|+.- ...+-+-|.-+ +......|..|.|+|. ..|.
T Consensus 110 ~Le~~y~G~s~kl~l~~~--~iCs~C~GsGg-------------ksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~ 174 (337)
T KOG0712|consen 110 TLEELYMGKSKKLFLSRN--FICSKCSGSGG-------------KSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCD 174 (337)
T ss_pred EHHHhhcCCccceecccC--ccCCcCCCCCC-------------CCCCCCCCCCCCCCCceeEEEeccccccccceeEec
Confidence 477777777777776633 22222222211 1112337999999985 3677
Q ss_pred CCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 247 RCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 247 ~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
.|+|+|.... ...+|+.|.|++.+
T Consensus 175 ~C~G~G~~~~-----------------~kd~C~~C~G~~~v 198 (337)
T KOG0712|consen 175 SCNGSGETIS-----------------LKDRCKTCSGAKVV 198 (337)
T ss_pred cCCCcccccc-----------------ccccCcccccchhh
Confidence 7777776521 25699999999975
No 80
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.53 E-value=1.6 Score=44.83 Aligned_cols=47 Identities=30% Similarity=0.723 Sum_probs=31.5
Q ss_pred cccccccccCcc-ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee--eCCCCCCc
Q 021514 231 KKRCKYCHGSGY-LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV--MCPSCLCT 295 (311)
Q Consensus 231 ~k~C~~C~GtG~-v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV--~CptC~Gt 295 (311)
...|..| |+ ..|++|++.=..... .....|+.|+-.-.+ .||.|.+.
T Consensus 213 ~~~C~~C---g~~~~C~~C~~~l~~h~~---------------~~~l~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 213 NLLCRSC---GYILCCPNCDVSLTYHKK---------------EGKLRCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred eeEhhhC---cCccCCCCCCCceEEecC---------------CCeEEcCCCcCcCCCCCCCCCCCCC
Confidence 4578888 44 689999876443321 235788888866554 68888765
No 81
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=78.93 E-value=1.1 Score=43.09 Aligned_cols=43 Identities=33% Similarity=0.739 Sum_probs=34.5
Q ss_pred ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee----------e-CCCCCCceEEece
Q 021514 243 LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV----------M-CPSCLCTGMMMAS 301 (311)
Q Consensus 243 v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV----------~-CptC~GtG~v~~s 301 (311)
..|..|.|.|... +.....|..|.|.|++ . |..|+|.|.+...
T Consensus 165 ~~~~t~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~ 218 (288)
T KOG0715|consen 165 SDCETCFGSGAEE----------------GAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLRD 218 (288)
T ss_pred cccccccCcCccc----------------ccccccchhhhCcccccccccCCcceeecccccccceeccc
Confidence 5899999999332 2357899999999943 4 9999999998754
No 82
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.16 E-value=1.5 Score=48.71 Aligned_cols=25 Identities=28% Similarity=0.658 Sum_probs=20.8
Q ss_pred eeeCCCCCcCcee------------eCCCCCCceEEe
Q 021514 275 TQRCPNCSGAGKV------------MCPSCLCTGMMM 299 (311)
Q Consensus 275 ~~~CptC~G~GkV------------~CptC~GtG~v~ 299 (311)
.-+|+.|.|.|.+ +|+.|+|+++..
T Consensus 736 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~ 772 (924)
T TIGR00630 736 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNR 772 (924)
T ss_pred CCCCCCCccceEEEEEccCCCCcccCCCCcCCceeCh
Confidence 4679999999976 799999988753
No 83
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.48 E-value=1.8 Score=48.00 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=26.1
Q ss_pred cCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 244 ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 244 ~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
.|+.|.|.|.+....... .....+|+.|+|++..
T Consensus 738 ~C~~C~G~G~~~~~~~f~----------~~~~~~C~~C~G~R~~ 771 (924)
T TIGR00630 738 RCEACQGDGVIKIEMHFL----------PDVYVPCEVCKGKRYN 771 (924)
T ss_pred CCCCCccceEEEEEccCC----------CCcccCCCCcCCceeC
Confidence 699999999998654332 2357899999999753
No 84
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.39 E-value=1.8 Score=42.09 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=9.2
Q ss_pred eCCCCCCceEEec
Q 021514 288 MCPSCLCTGMMMA 300 (311)
Q Consensus 288 ~CptC~GtG~v~~ 300 (311)
+|+.|.-.|.+..
T Consensus 264 rC~~CNENGLvrC 276 (281)
T KOG2824|consen 264 RCLECNENGLVRC 276 (281)
T ss_pred ECcccCCCCceeC
Confidence 6777777777654
No 85
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=73.86 E-value=1.7 Score=48.37 Aligned_cols=25 Identities=28% Similarity=0.655 Sum_probs=20.7
Q ss_pred eeeCCCCCcCcee------------eCCCCCCceEEe
Q 021514 275 TQRCPNCSGAGKV------------MCPSCLCTGMMM 299 (311)
Q Consensus 275 ~~~CptC~G~GkV------------~CptC~GtG~v~ 299 (311)
.-+|++|.|.|.+ .|+.|+|+.+..
T Consensus 738 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~ 774 (943)
T PRK00349 738 GGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNR 774 (943)
T ss_pred CCCCCcccccceEEEEeccCCCccccCccccCccccc
Confidence 4579999999976 699999987754
No 86
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=73.67 E-value=1.7 Score=41.39 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=21.4
Q ss_pred ccccccccCccccCCCCCCCceeeee
Q 021514 232 KRCKYCHGSGYLACARCSSSGVCLSV 257 (311)
Q Consensus 232 k~C~~C~GtG~v~C~~C~GSG~i~~~ 257 (311)
.+|..-.|.+.++|+.|+|+|.+...
T Consensus 28 ~py~e~~g~~~vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 28 FPYVEFTGRDSVTCPTCQGTGRIPRE 53 (238)
T ss_pred CccccccCCCCCcCCCCcCCccCCcc
Confidence 46666778888999999999999764
No 87
>KOG2090 consensus Metalloendopeptidase family - mitochondrial intermediate peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=71.91 E-value=4.3 Score=43.60 Aligned_cols=57 Identities=18% Similarity=0.390 Sum_probs=45.5
Q ss_pred EEeCchhHHHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCCC
Q 021514 68 IIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVIDESGEEEASEMPEIPSSI 137 (311)
Q Consensus 68 ~~~~~~~~~d~~~m~~~ei~~ni~~r~~kif~l~eevrrlr~q~~~~~~~~~~~~~~~~~~~~~~~~s~~ 137 (311)
+.++|++|++| |+|+.++.+.|-.|+|-+|.++ |..+.+..+.|-+.|+.|-|.+.+
T Consensus 299 ~a~~pk~V~~F----l~~Ls~k~~~~~~kel~~i~~m---------k~k~~~~~~~e~~~WD~~YYT~~~ 355 (704)
T KOG2090|consen 299 LAKNPKTVRSF----LEELSEKLSEKTDKELAVIRDM---------KKKENNNNNAEIEPWDRPYYTSMY 355 (704)
T ss_pred ccCChHHHHHH----HHHHHHhhhHHHHHHHHHHHHH---------HhhhcCCCCCccccccchhhhhHh
Confidence 58999999999 5699999999999999999998 234445455567889888766653
No 88
>PRK14873 primosome assembly protein PriA; Provisional
Probab=71.23 E-value=3.8 Score=43.94 Aligned_cols=48 Identities=27% Similarity=0.524 Sum_probs=30.8
Q ss_pred ccccccccccCcc-ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCce-eeCCCCCCc
Q 021514 230 EKKRCKYCHGSGY-LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGK-VMCPSCLCT 295 (311)
Q Consensus 230 ~~k~C~~C~GtG~-v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~Gk-V~CptC~Gt 295 (311)
....|..| |+ ..|++|++.=..... .....|+.|+-.-. ..|+.|.++
T Consensus 382 p~l~C~~C---g~~~~C~~C~~~L~~h~~---------------~~~l~Ch~CG~~~~p~~Cp~Cgs~ 431 (665)
T PRK14873 382 PSLACARC---RTPARCRHCTGPLGLPSA---------------GGTPRCRWCGRAAPDWRCPRCGSD 431 (665)
T ss_pred CeeEhhhC---cCeeECCCCCCceeEecC---------------CCeeECCCCcCCCcCccCCCCcCC
Confidence 34578888 44 689999886554321 23567888875421 268888765
No 89
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=70.28 E-value=3.2 Score=46.21 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=25.5
Q ss_pred cCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 244 ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 244 ~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
.|+.|.|.|.+....... .....+|+.|+|+...
T Consensus 740 ~C~~C~G~G~~~~~~~f~----------~~~~~~C~~C~G~R~~ 773 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFL----------PDVYVPCDVCKGKRYN 773 (943)
T ss_pred CCCcccccceEEEEeccC----------CCccccCccccCcccc
Confidence 599999999998653332 2346899999998753
No 90
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=70.23 E-value=3.1 Score=37.93 Aligned_cols=50 Identities=34% Similarity=0.921 Sum_probs=34.1
Q ss_pred ccccccccccCccccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCc------eeeCCCCC
Q 021514 230 EKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAG------KVMCPSCL 293 (311)
Q Consensus 230 ~~k~C~~C~GtG~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~G------kV~CptC~ 293 (311)
....|..|.++|. .|.-|+....+- +.......+|+.|+--= +..||.|.
T Consensus 141 HV~~C~lC~~kGf-iCe~C~~~~~If-------------PF~~~~~~~C~~C~~v~H~~C~~~~~CpkC~ 196 (202)
T PF13901_consen 141 HVYSCELCQQKGF-ICEICNSDDIIF-------------PFQIDTTVRCPKCKSVFHKSCFRKKSCPKCA 196 (202)
T ss_pred HHHHhHHHHhCCC-CCccCCCCCCCC-------------CCCCCCeeeCCcCccccchhhcCCCCCCCcH
Confidence 3459999999995 899998875443 23334567787776532 23688884
No 91
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=68.58 E-value=0.58 Score=45.72 Aligned_cols=37 Identities=24% Similarity=0.618 Sum_probs=32.1
Q ss_pred CceeeCCCCCcCcee----------------eCCCCCCceEEeceeeCCCcCC
Q 021514 273 PTTQRCPNCSGAGKV----------------MCPSCLCTGMMMASEHDPRIDP 309 (311)
Q Consensus 273 q~~~~CptC~G~GkV----------------~CptC~GtG~v~~sEhD~riDP 309 (311)
-.+..|.+|+-+++. .|.+|.+-=+++-.|.||.+||
T Consensus 223 ~VR~KC~nC~~t~~l~y~sl~s~E~A~vkAEtC~~C~sYlKilyqekdp~vea 275 (308)
T COG3058 223 YVRVKCSNCEQSKKLHYWSLESSELAAVKAETCGDCNSYLKILYQEKDPKVEA 275 (308)
T ss_pred HHHHHhccccccCCccceeccchhhhHhhhhcCCcHHHHHHHHHHhcCCcccc
Confidence 357789999988764 7999999888899999999997
No 92
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=67.14 E-value=2.9 Score=49.61 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=6.3
Q ss_pred eeCCCCCcCcee
Q 021514 276 QRCPNCSGAGKV 287 (311)
Q Consensus 276 ~~CptC~G~GkV 287 (311)
-+|+.|.|.|.+
T Consensus 1608 GrC~~C~G~G~i 1619 (1809)
T PRK00635 1608 GQCSDCWGLGYQ 1619 (1809)
T ss_pred CCCCCCccCceE
Confidence 345555555543
No 93
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.08 E-value=14 Score=36.59 Aligned_cols=37 Identities=24% Similarity=0.466 Sum_probs=24.5
Q ss_pred ccccCCCCCCCCCCCCCCC----C-------CHHHHHHHHHHHHHHHH
Q 021514 124 EEEASEMPEIPSSIPFLPY----V-------TPKTLKQLYLTSLSFIS 160 (311)
Q Consensus 124 ~~~~~~~~~~~s~~p~~~~----~-------~~~~~~~~~~~~~~~~~ 160 (311)
..+++.-|-.||.+|+.|= + =+|+.|..|.+|...+.
T Consensus 96 ~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~yylwm~~~~ 143 (313)
T KOG3088|consen 96 VIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLWMGLVL 143 (313)
T ss_pred cccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 3344666779999999992 2 24677766666665544
No 94
>PRK05580 primosome assembly protein PriA; Validated
Probab=66.88 E-value=5.6 Score=42.42 Aligned_cols=48 Identities=25% Similarity=0.551 Sum_probs=30.6
Q ss_pred cccccccccCccccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee--eCCCCCCc
Q 021514 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV--MCPSCLCT 295 (311)
Q Consensus 231 ~k~C~~C~GtG~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV--~CptC~Gt 295 (311)
...|..|.- ...|++|++.=.... ......|+.|+-.-.. .||.|.+.
T Consensus 381 ~~~C~~Cg~--~~~C~~C~~~l~~h~---------------~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 381 FLLCRDCGW--VAECPHCDASLTLHR---------------FQRRLRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred ceEhhhCcC--ccCCCCCCCceeEEC---------------CCCeEECCCCcCCCCCCCCCCCCcCC
Confidence 457888832 258999988433221 1235678888876554 78888765
No 95
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=65.28 E-value=4.7 Score=47.92 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=24.6
Q ss_pred cCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCce
Q 021514 244 ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGK 286 (311)
Q Consensus 244 ~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~Gk 286 (311)
.|+.|.|.|.+....... .....+|+.|+|+..
T Consensus 1609 rC~~C~G~G~i~i~m~fl----------~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFY----------ALEKRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCccCceEEEecccC----------CCcccCCCCCCCcCC
Confidence 699999999987654332 235788999998865
No 96
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=63.75 E-value=5.8 Score=44.04 Aligned_cols=21 Identities=14% Similarity=0.397 Sum_probs=13.9
Q ss_pred EEEeCchhHHHHHhhcHHHHHH
Q 021514 67 SIIEGPETLQDFVQMQLKEIED 88 (311)
Q Consensus 67 ~~~~~~~~~~d~~~m~~~ei~~ 88 (311)
+-|.+ -.+.||..|++.+..+
T Consensus 416 v~i~g-~~i~e~~~msi~~~~~ 436 (935)
T COG0178 416 VKIAG-KNIAEISEMSIADALE 436 (935)
T ss_pred eEECC-ccHHHHhhccHHHHHH
Confidence 44555 5678888888665544
No 97
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=62.22 E-value=4.3 Score=44.99 Aligned_cols=24 Identities=29% Similarity=0.711 Sum_probs=19.9
Q ss_pred eeeCCCCCcCcee------------eCCCCCCceEE
Q 021514 275 TQRCPNCSGAGKV------------MCPSCLCTGMM 298 (311)
Q Consensus 275 ~~~CptC~G~GkV------------~CptC~GtG~v 298 (311)
.-+|..|+|.|.+ +|+.|+|+.+-
T Consensus 730 GGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn 765 (935)
T COG0178 730 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYN 765 (935)
T ss_pred CcCCccccCCceEEEEeccCCCceeeCCCcCCcccc
Confidence 3689999999965 79999998664
No 98
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=61.91 E-value=5.2 Score=42.55 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=24.1
Q ss_pred hhHHHHHhhcHHHHHH----HHHh---hhhhhHHHHHHHHHHHHHHhh
Q 021514 73 ETLQDFVQMQLKEIED----NIKH---RRNRIFFLMEELRRLRVQQRI 113 (311)
Q Consensus 73 ~~~~d~~~m~~~ei~~----ni~~---r~~kif~l~eevrrlr~q~~~ 113 (311)
--|-|||+==|.||+. ||.. +==+=+=.|.|||.||.|..+
T Consensus 393 y~Vs~~a~~~L~~ir~~Pl~~~q~ln~~Ly~~~~~L~~v~~lR~qL~~ 440 (580)
T KOG1829|consen 393 YPVSNFAKQFLDEIREQPLFNLQDLNPDLYSKVKALAEVKELRQQLQH 440 (580)
T ss_pred cccchhHHHHHHHHhccchhhhcccChHHHhhhHHHHHHHHHHHHHHH
Confidence 3577777766666653 3332 222233467788888877654
No 99
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=56.71 E-value=12 Score=25.02 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=7.3
Q ss_pred ccCCCCCCCcee
Q 021514 243 LACARCSSSGVC 254 (311)
Q Consensus 243 v~C~~C~GSG~i 254 (311)
+.|++|+..=.+
T Consensus 3 ~~CP~C~~~~~v 14 (38)
T TIGR02098 3 IQCPNCKTSFRV 14 (38)
T ss_pred EECCCCCCEEEe
Confidence 467777665444
No 100
>PRK04023 DNA polymerase II large subunit; Validated
Probab=54.81 E-value=9.8 Score=43.08 Aligned_cols=46 Identities=24% Similarity=0.639 Sum_probs=30.6
Q ss_pred ccccccccccCc-cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCce-eeCCCCCCc
Q 021514 230 EKKRCKYCHGSG-YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGK-VMCPSCLCT 295 (311)
Q Consensus 230 ~~k~C~~C~GtG-~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~Gk-V~CptC~Gt 295 (311)
..+.|+.|.-.+ ...|+.|+.. + .....|+.|+-.+. ..|++|.-.
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~---T-----------------e~i~fCP~CG~~~~~y~CPKCG~E 672 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTH---T-----------------EPVYRCPRCGIEVEEDECEKCGRE 672 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCC---C-----------------CcceeCccccCcCCCCcCCCCCCC
Confidence 456888887543 4688888665 1 12468889865543 479999654
No 101
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=53.93 E-value=9.7 Score=43.95 Aligned_cols=45 Identities=29% Similarity=0.812 Sum_probs=28.6
Q ss_pred cccccccccCc-cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcC------ceeeCCCCCCc
Q 021514 231 KKRCKYCHGSG-YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGA------GKVMCPSCLCT 295 (311)
Q Consensus 231 ~k~C~~C~GtG-~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~------GkV~CptC~Gt 295 (311)
...|+.|.... ...|+.|...=. ....|+.|+.. |...|+.|.-.
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te--------------------~vy~CPsCGaev~~des~a~~CP~CGtp 718 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTE--------------------PVYVCPDCGAEVPPDESGRVECPRCDVE 718 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCC--------------------CceeCccCCCccCCCccccccCCCCCCc
Confidence 46888887643 357888855411 13478888763 23479988643
No 102
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=51.90 E-value=12 Score=25.48 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=8.5
Q ss_pred ccCCCCCCCceee
Q 021514 243 LACARCSSSGVCL 255 (311)
Q Consensus 243 v~C~~C~GSG~i~ 255 (311)
++|++|+..-.+.
T Consensus 3 i~CP~C~~~f~v~ 15 (37)
T PF13719_consen 3 ITCPNCQTRFRVP 15 (37)
T ss_pred EECCCCCceEEcC
Confidence 4678887665554
No 103
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=51.13 E-value=9.3 Score=41.03 Aligned_cols=17 Identities=24% Similarity=0.698 Sum_probs=11.3
Q ss_pred ccccccc---CccccCCCCC
Q 021514 233 RCKYCHG---SGYLACARCS 249 (311)
Q Consensus 233 ~C~~C~G---tG~v~C~~C~ 249 (311)
.|+.|+. .|..-|..|.
T Consensus 3 ~Cp~Cg~~n~~~akFC~~CG 22 (645)
T PRK14559 3 ICPQCQFENPNNNRFCQKCG 22 (645)
T ss_pred cCCCCCCcCCCCCccccccC
Confidence 6777764 3456788883
No 104
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=49.17 E-value=11 Score=33.22 Aligned_cols=29 Identities=10% Similarity=0.280 Sum_probs=21.7
Q ss_pred hhHHHHHhhcHHHHHHHHHhhhhhhHHHH
Q 021514 73 ETLQDFVQMQLKEIEDNIKHRRNRIFFLM 101 (311)
Q Consensus 73 ~~~~d~~~m~~~ei~~ni~~r~~kif~l~ 101 (311)
+.+.|..+.+..+|++.|..-|.+.--+-
T Consensus 3 ~~l~e~~~~~~~~L~~~le~a~e~~~~~~ 31 (146)
T PF07295_consen 3 ESLEEALEHSEEELQEALEKAKEYLVAAG 31 (146)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 46777788888888888888777765443
No 105
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=49.10 E-value=10 Score=41.32 Aligned_cols=35 Identities=31% Similarity=0.828 Sum_probs=26.0
Q ss_pred cccccccccc-------CccccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcC
Q 021514 230 EKKRCKYCHG-------SGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGA 284 (311)
Q Consensus 230 ~~k~C~~C~G-------tG~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~ 284 (311)
....|+.|.. ++...|..|+-.. .....||.|++.
T Consensus 443 ~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~--------------------~~p~~Cp~Cgs~ 484 (730)
T COG1198 443 YIAECPNCDSPLTLHKATGQLRCHYCGYQE--------------------PIPQSCPECGSE 484 (730)
T ss_pred CcccCCCCCcceEEecCCCeeEeCCCCCCC--------------------CCCCCCCCCCCC
Confidence 3568999986 5668999995442 136889999987
No 106
>PF14353 CpXC: CpXC protein
Probab=47.91 E-value=17 Score=30.28 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=11.6
Q ss_pred ccCCCCCCCceeeeec
Q 021514 243 LACARCSSSGVCLSVD 258 (311)
Q Consensus 243 v~C~~C~GSG~i~~~~ 258 (311)
++|+.|+..+......
T Consensus 2 itCP~C~~~~~~~v~~ 17 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWT 17 (128)
T ss_pred cCCCCCCCeeEEEEEe
Confidence 5788888888776543
No 107
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=47.00 E-value=11 Score=31.66 Aligned_cols=7 Identities=43% Similarity=0.785 Sum_probs=3.4
Q ss_pred ccCCCCC
Q 021514 243 LACARCS 249 (311)
Q Consensus 243 v~C~~C~ 249 (311)
..|..|+
T Consensus 71 ~~C~~Cg 77 (113)
T PRK12380 71 AWCWDCS 77 (113)
T ss_pred EEcccCC
Confidence 3455554
No 108
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=46.89 E-value=21 Score=29.76 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=15.9
Q ss_pred cCceeeCCCCCCceEEeceeeCCCcC
Q 021514 283 GAGKVMCPSCLCTGMMMASEHDPRID 308 (311)
Q Consensus 283 G~GkV~CptC~GtG~v~~sEhD~riD 308 (311)
|.+.+.|+.|.-.--...+..|-.||
T Consensus 39 ~~~h~~C~~CG~y~~~~V~~l~epID 64 (99)
T PRK14892 39 NIAIITCGNCGLYTEFEVPSVYDEVD 64 (99)
T ss_pred CcceEECCCCCCccCEECCccccchh
Confidence 45667888886544444555555555
No 109
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=44.63 E-value=11 Score=30.99 Aligned_cols=39 Identities=28% Similarity=0.702 Sum_probs=22.6
Q ss_pred ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 243 LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 243 v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
..|..|+|.|........- ..+.......|+.|+|+|.-
T Consensus 6 ~~c~~c~g~g~al~~~~s~------~~~G~pvfk~c~rcgg~G~s 44 (95)
T PF03589_consen 6 DSCRRCAGDGAALDMKQSK------AQFGVPVFKDCERCGGRGYS 44 (95)
T ss_pred CCcCccCCcceeccHHHhH------hccCCchhhhhhhhcCCCCC
Confidence 5788899999654321110 01123345678888888753
No 110
>PRK14873 primosome assembly protein PriA; Provisional
Probab=43.39 E-value=16 Score=39.27 Aligned_cols=34 Identities=32% Similarity=0.882 Sum_probs=24.0
Q ss_pred cccccccccc-------CccccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcC
Q 021514 230 EKKRCKYCHG-------SGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGA 284 (311)
Q Consensus 230 ~~k~C~~C~G-------tG~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~ 284 (311)
....|++|.+ .+...|..|+-. . ....||.|++.
T Consensus 391 ~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~---~------------------~p~~Cp~Cgs~ 431 (665)
T PRK14873 391 TPARCRHCTGPLGLPSAGGTPRCRWCGRA---A------------------PDWRCPRCGSD 431 (665)
T ss_pred CeeECCCCCCceeEecCCCeeECCCCcCC---C------------------cCccCCCCcCC
Confidence 4578999996 335789999431 1 24689999886
No 111
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=42.33 E-value=10 Score=31.54 Aligned_cols=26 Identities=23% Similarity=0.616 Sum_probs=12.4
Q ss_pred eeeCCCCCcCcee-----eCCCCCCceEEec
Q 021514 275 TQRCPNCSGAGKV-----MCPSCLCTGMMMA 300 (311)
Q Consensus 275 ~~~CptC~G~GkV-----~CptC~GtG~v~~ 300 (311)
..+|..|+-.... .||.|++......
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i~ 100 (113)
T PF01155_consen 70 RARCRDCGHEFEPDEFDFSCPRCGSPDVEII 100 (113)
T ss_dssp EEEETTTS-EEECHHCCHH-SSSSSS-EEEE
T ss_pred cEECCCCCCEEecCCCCCCCcCCcCCCcEEc
Confidence 4556666554433 4666666654333
No 112
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.42 E-value=17 Score=37.61 Aligned_cols=35 Identities=29% Similarity=0.723 Sum_probs=24.1
Q ss_pred cccccccccc-------CccccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcC
Q 021514 230 EKKRCKYCHG-------SGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGA 284 (311)
Q Consensus 230 ~~k~C~~C~G-------tG~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~ 284 (311)
....|+.|.+ .+...|..|+-+- .....||.|++.
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~--------------------~~~~~Cp~C~s~ 262 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQE--------------------PIPKTCPQCGSE 262 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcC--------------------CCCCCCCCCCCC
Confidence 4568999984 4457899885321 135789999875
No 113
>PF15616 TerY-C: TerY-C metal binding domain
Probab=40.88 E-value=20 Score=31.38 Aligned_cols=20 Identities=40% Similarity=0.747 Sum_probs=11.6
Q ss_pred CcCceeeCCCCCCceEEece
Q 021514 282 SGAGKVMCPSCLCTGMMMAS 301 (311)
Q Consensus 282 ~G~GkV~CptC~GtG~v~~s 301 (311)
+|.+.+.||-|.-+|..-..
T Consensus 101 ~g~~~~~CPwCg~~g~~~~~ 120 (131)
T PF15616_consen 101 DGEGEVTCPWCGNEGSFGAG 120 (131)
T ss_pred CCCCCEECCCCCCeeeeccc
Confidence 44556666666666665443
No 114
>PRK11032 hypothetical protein; Provisional
Probab=39.73 E-value=19 Score=32.47 Aligned_cols=10 Identities=50% Similarity=1.315 Sum_probs=5.4
Q ss_pred cCccccCCCC
Q 021514 239 GSGYLACARC 248 (311)
Q Consensus 239 GtG~v~C~~C 248 (311)
|.|...|..|
T Consensus 121 g~G~LvC~~C 130 (160)
T PRK11032 121 GLGNLVCEKC 130 (160)
T ss_pred ecceEEecCC
Confidence 3445555555
No 115
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=38.62 E-value=17 Score=30.47 Aligned_cols=7 Identities=43% Similarity=1.113 Sum_probs=3.9
Q ss_pred ccCCCCC
Q 021514 243 LACARCS 249 (311)
Q Consensus 243 v~C~~C~ 249 (311)
..|..|+
T Consensus 71 ~~C~~Cg 77 (115)
T TIGR00100 71 CECEDCS 77 (115)
T ss_pred EEcccCC
Confidence 4566664
No 116
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=38.53 E-value=14 Score=30.37 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=4.8
Q ss_pred CCCCCCceEE
Q 021514 289 CPSCLCTGMM 298 (311)
Q Consensus 289 CptC~GtG~v 298 (311)
|+.|.|.|..
T Consensus 35 c~rcgg~G~s 44 (95)
T PF03589_consen 35 CERCGGRGYS 44 (95)
T ss_pred hhhhcCCCCC
Confidence 4445554443
No 117
>PRK05580 primosome assembly protein PriA; Validated
Probab=38.06 E-value=19 Score=38.42 Aligned_cols=35 Identities=29% Similarity=0.757 Sum_probs=23.9
Q ss_pred ccccccccccC-------ccccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcC
Q 021514 230 EKKRCKYCHGS-------GYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGA 284 (311)
Q Consensus 230 ~~k~C~~C~Gt-------G~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~ 284 (311)
....|++|.+. +...|+.|+-+- .....||.|++.
T Consensus 389 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~--------------------~~~~~Cp~Cg~~ 430 (679)
T PRK05580 389 WVAECPHCDASLTLHRFQRRLRCHHCGYQE--------------------PIPKACPECGST 430 (679)
T ss_pred CccCCCCCCCceeEECCCCeEECCCCcCCC--------------------CCCCCCCCCcCC
Confidence 45689999863 346799995331 124689999876
No 118
>PRK00420 hypothetical protein; Validated
Probab=36.30 E-value=23 Score=30.23 Aligned_cols=19 Identities=37% Similarity=0.852 Sum_probs=12.3
Q ss_pred eeCCCCCc------CceeeCCCCCC
Q 021514 276 QRCPNCSG------AGKVMCPSCLC 294 (311)
Q Consensus 276 ~~CptC~G------~GkV~CptC~G 294 (311)
..||.|+. .|++.||.|.-
T Consensus 24 ~~CP~Cg~pLf~lk~g~~~Cp~Cg~ 48 (112)
T PRK00420 24 KHCPVCGLPLFELKDGEVVCPVHGK 48 (112)
T ss_pred CCCCCCCCcceecCCCceECCCCCC
Confidence 56777764 36667777754
No 119
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=36.30 E-value=18 Score=30.39 Aligned_cols=7 Identities=57% Similarity=1.355 Sum_probs=3.7
Q ss_pred ccCCCCC
Q 021514 243 LACARCS 249 (311)
Q Consensus 243 v~C~~C~ 249 (311)
..|..|+
T Consensus 72 ~~C~~Cg 78 (117)
T PRK00564 72 LECKDCS 78 (117)
T ss_pred EEhhhCC
Confidence 4555554
No 120
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=35.85 E-value=71 Score=31.72 Aligned_cols=83 Identities=13% Similarity=0.228 Sum_probs=50.5
Q ss_pred eEEEeCchhHHHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccccccCCCCC---CCCCCCCCCC
Q 021514 66 FSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVIDESGEEEASEMPE---IPSSIPFLPY 142 (311)
Q Consensus 66 ~~~~~~~~~~~d~~~m~~~ei~~ni~~r~~kif~l~eevrrlr~q~~~~~~~~~~~~~~~~~~~~~~---~~s~~p~~~~ 142 (311)
..|||+|+--..|++|..++|++=|..=|++. +.|+ .||+-.-+...-|++-.--++- .==++||+|+
T Consensus 107 eVii~sp~H~~~l~~m~~~~i~~v~~~~~~r~-------~~l~--~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a~p~vP~ 177 (347)
T TIGR00209 107 RVICFSPDHSKTLPELSVAALTEIVKTWQEQT-------AELG--KTYPWVQIFENKGAAMGCSNPHPHGQIWANSFLPN 177 (347)
T ss_pred EEEEeCCCccCChhHCCHHHHHHHHHHHHHHH-------HHHH--hCCcEEEEEeecCcccCcCCCCCceeeeeCCCCCh
Confidence 56999999999999999999998666655544 3443 3555433332222222222331 1123899998
Q ss_pred CCHH---HHHHHHHHHHH
Q 021514 143 VTPK---TLKQLYLTSLS 157 (311)
Q Consensus 143 ~~~~---~~~~~~~~~~~ 157 (311)
.-.. ..+.||.....
T Consensus 178 ~~~~e~~~~~~y~~~~g~ 195 (347)
T TIGR00209 178 EVEREDRLQKEYFAEHKS 195 (347)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 6554 45566665543
No 121
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=35.65 E-value=54 Score=24.35 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=26.3
Q ss_pred HHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhc
Q 021514 76 QDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKG 115 (311)
Q Consensus 76 ~d~~~m~~~ei~~ni~~r~~kif~l~eevrrlr~q~~~~~ 115 (311)
+|+-+|..+||++-|..=+. |+-.||.|..+..
T Consensus 2 ~elr~ls~~eL~~~l~elk~-------eL~~Lr~q~~~~~ 34 (58)
T PF00831_consen 2 KELRELSDEELQEKLEELKK-------ELFNLRFQKATGQ 34 (58)
T ss_dssp HHHCHSHHHHHHHHHHHHHH-------HHHHHHHHHHHSS
T ss_pred HHHHhCCHHHHHHHHHHHHH-------HHHHHHHHHHhcc
Confidence 68889999999997776554 7778999988743
No 122
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=34.70 E-value=33 Score=30.31 Aligned_cols=12 Identities=42% Similarity=1.091 Sum_probs=9.1
Q ss_pred cCccccCCCCCC
Q 021514 239 GSGYLACARCSS 250 (311)
Q Consensus 239 GtG~v~C~~C~G 250 (311)
|.|...|..|+-
T Consensus 109 g~G~l~C~~Cg~ 120 (146)
T PF07295_consen 109 GPGTLVCENCGH 120 (146)
T ss_pred cCceEecccCCC
Confidence 677888888844
No 123
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=34.36 E-value=26 Score=24.26 Aligned_cols=9 Identities=33% Similarity=0.929 Sum_probs=4.8
Q ss_pred cCCCCCCCc
Q 021514 244 ACARCSSSG 252 (311)
Q Consensus 244 ~C~~C~GSG 252 (311)
.|+.|..+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 466665543
No 124
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=34.31 E-value=33 Score=26.50 Aligned_cols=34 Identities=32% Similarity=0.722 Sum_probs=21.2
Q ss_pred eeeCCCCCcCcee-eCCCCCCceEEeceeeCCCcCCCC
Q 021514 275 TQRCPNCSGAGKV-MCPSCLCTGMMMASEHDPRIDPFD 311 (311)
Q Consensus 275 ~~~CptC~G~GkV-~CptC~GtG~v~~sEhD~riDPf~ 311 (311)
...|+.|+-.--. +|+.|.|.- ..-|-||++|=|
T Consensus 5 ~rkC~~cg~YTLke~Cp~CG~~t---~~~~PprFSPeD 39 (59)
T COG2260 5 IRKCPKCGRYTLKEKCPVCGGDT---KVPHPPRFSPED 39 (59)
T ss_pred hhcCcCCCceeecccCCCCCCcc---ccCCCCCCCccc
Confidence 3567777654433 788887644 345667776643
No 125
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=33.89 E-value=37 Score=23.28 Aligned_cols=9 Identities=44% Similarity=1.361 Sum_probs=5.8
Q ss_pred eeeCCCCCc
Q 021514 275 TQRCPNCSG 283 (311)
Q Consensus 275 ~~~CptC~G 283 (311)
...|+.|+|
T Consensus 19 id~C~~C~G 27 (41)
T PF13453_consen 19 IDVCPSCGG 27 (41)
T ss_pred EEECCCCCe
Confidence 456777766
No 126
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=33.72 E-value=14 Score=41.19 Aligned_cols=45 Identities=27% Similarity=0.694 Sum_probs=0.0
Q ss_pred cccccccccCcc-ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCce-eeCCCCCCc
Q 021514 231 KKRCKYCHGSGY-LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGK-VMCPSCLCT 295 (311)
Q Consensus 231 ~k~C~~C~GtG~-v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~Gk-V~CptC~Gt 295 (311)
...|+.|.-... ..|+.|.+.=. ....||.|+-.-. -.|++|.-.
T Consensus 655 ~r~Cp~Cg~~t~~~~Cp~CG~~T~--------------------~~~~Cp~C~~~~~~~~C~~C~~~ 701 (900)
T PF03833_consen 655 RRRCPKCGKETFYNRCPECGSHTE--------------------PVYVCPDCGIEVEEDECPKCGRE 701 (900)
T ss_dssp -------------------------------------------------------------------
T ss_pred cccCcccCCcchhhcCcccCCccc--------------------cceeccccccccCcccccccccc
Confidence 457888865543 57888844311 2457888876432 388888654
No 127
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=33.48 E-value=58 Score=23.53 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=8.6
Q ss_pred ccCCCCCCCcee
Q 021514 243 LACARCSSSGVC 254 (311)
Q Consensus 243 v~C~~C~GSG~i 254 (311)
++|+.|.|....
T Consensus 2 kPCPfCGg~~~~ 13 (53)
T TIGR03655 2 KPCPFCGGADVY 13 (53)
T ss_pred CCCCCCCCccee
Confidence 468888787763
No 128
>PRK05978 hypothetical protein; Provisional
Probab=32.16 E-value=23 Score=31.57 Aligned_cols=7 Identities=57% Similarity=1.635 Sum_probs=3.8
Q ss_pred eeCCCCC
Q 021514 276 QRCPNCS 282 (311)
Q Consensus 276 ~~CptC~ 282 (311)
.+||+|+
T Consensus 34 grCP~CG 40 (148)
T PRK05978 34 GRCPACG 40 (148)
T ss_pred CcCCCCC
Confidence 4566664
No 129
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.59 E-value=34 Score=31.75 Aligned_cols=65 Identities=25% Similarity=0.224 Sum_probs=34.5
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccch
Q 021514 93 RRNRIFFLMEELRRLRVQQRIKGLKVIDESGEEEASEMPEIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPT 172 (311)
Q Consensus 93 r~~kif~l~eevrrlr~q~~~~~~~~~~~~~~~~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~fggl~ap~ 172 (311)
+.+.|-=|-+|-++|+=|......+.... +.+..+ + .++...-|..+.+.|+++=++=|||.|.
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l--~~~~~~-------------~-~~~~~~~wf~~Gg~v~~~GlllGlilp~ 193 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAA--NLQLDD-------------K-QRTIIMQWFMYGGGVAGIGLLLGLLLPH 193 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-------------H-HHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 33444448888888876654433333210 111111 1 2344445556666666666666788886
Q ss_pred h
Q 021514 173 L 173 (311)
Q Consensus 173 ~ 173 (311)
|
T Consensus 194 l 194 (206)
T PRK10884 194 L 194 (206)
T ss_pred c
Confidence 5
No 130
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=31.47 E-value=42 Score=25.44 Aligned_cols=34 Identities=35% Similarity=0.811 Sum_probs=23.7
Q ss_pred eeeCCCCCcCc-eeeCCCCCCceEEeceeeCCCcCCCC
Q 021514 275 TQRCPNCSGAG-KVMCPSCLCTGMMMASEHDPRIDPFD 311 (311)
Q Consensus 275 ~~~CptC~G~G-kV~CptC~GtG~v~~sEhD~riDPf~ 311 (311)
...|+.|+-.. +..||.|.+. ...-|=+|+.|=|
T Consensus 5 mr~C~~CgvYTLk~~CP~CG~~---t~~~~P~rfSp~D 39 (56)
T PRK13130 5 IRKCPKCGVYTLKEICPVCGGK---TKNPHPPRFSPED 39 (56)
T ss_pred ceECCCCCCEEccccCcCCCCC---CCCCCCCCCCCCC
Confidence 46788887655 3479999654 5667888887744
No 131
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=28.71 E-value=44 Score=22.72 Aligned_cols=12 Identities=17% Similarity=0.595 Sum_probs=7.1
Q ss_pred ccCCCCCCCcee
Q 021514 243 LACARCSSSGVC 254 (311)
Q Consensus 243 v~C~~C~GSG~i 254 (311)
+.|+.|+..=.+
T Consensus 3 i~Cp~C~~~y~i 14 (36)
T PF13717_consen 3 ITCPNCQAKYEI 14 (36)
T ss_pred EECCCCCCEEeC
Confidence 467777655444
No 132
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=28.16 E-value=33 Score=24.28 Aligned_cols=13 Identities=15% Similarity=0.330 Sum_probs=7.1
Q ss_pred ccCCCCCCCceee
Q 021514 243 LACARCSSSGVCL 255 (311)
Q Consensus 243 v~C~~C~GSG~i~ 255 (311)
.+|+.|.|+..-.
T Consensus 4 ~pCP~CGG~DrFr 16 (40)
T PF08273_consen 4 GPCPICGGKDRFR 16 (40)
T ss_dssp E--TTTT-TTTEE
T ss_pred CCCCCCcCccccc
Confidence 4788888877665
No 133
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=27.89 E-value=67 Score=22.09 Aligned_cols=34 Identities=15% Similarity=0.407 Sum_probs=18.8
Q ss_pred cCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCC
Q 021514 244 ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCS 282 (311)
Q Consensus 244 ~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~ 282 (311)
.|+.|+.........++...+. .++..-.|.+|+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE-----~~T~fy~C~~C~ 35 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADE-----PMTLFYVCCNCG 35 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSS-----SSEEEEEESSST
T ss_pred CCcCCCCCeEEEEEeeccCCCC-----CCeEEEEeCCCC
Confidence 6889988888776555543221 133455777775
No 134
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=27.61 E-value=98 Score=28.78 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccchh
Q 021514 138 PFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTL 173 (311)
Q Consensus 138 p~~~~~~~~~~~~~~~~~~~~~~~~~~fggl~ap~~ 173 (311)
+|..++. +.++..+.....++.+++.|=..+.|.+
T Consensus 213 ~~~~~~~-~al~~~~~~~~~~~~~lv~~l~~l~p~~ 247 (262)
T PF14257_consen 213 SFGSRFR-DALKNGWNALVSFLSGLVVFLVGLLPWL 247 (262)
T ss_pred CcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 3344444444444444444434444444
No 135
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=26.92 E-value=83 Score=26.78 Aligned_cols=24 Identities=29% Similarity=0.768 Sum_probs=14.9
Q ss_pred eeCCCCCcCcee---------------eCCCCCCceEEe
Q 021514 276 QRCPNCSGAGKV---------------MCPSCLCTGMMM 299 (311)
Q Consensus 276 ~~CptC~G~GkV---------------~CptC~GtG~v~ 299 (311)
..|..|+..|.. .|..|...|.+.
T Consensus 78 ~~C~~Cg~~GH~~~~C~~~~~~~~~~~~C~~Cg~~gH~~ 116 (148)
T PTZ00368 78 RSCYNCGQTGHISRECPNRAKGGAARRACYNCGGEGHIS 116 (148)
T ss_pred cccCcCCCCCcccccCCCcccccccchhhcccCcCCcch
Confidence 356666666543 467777777664
No 136
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=26.83 E-value=91 Score=21.61 Aligned_cols=34 Identities=12% Similarity=0.394 Sum_probs=20.1
Q ss_pred cCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCC
Q 021514 244 ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCS 282 (311)
Q Consensus 244 ~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~ 282 (311)
.|+.|++........++...+ -.++..-.|.+|+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaD-----E~mT~fy~C~~C~ 35 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSAD-----EPMTVFYVCTKCG 35 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCC-----CCCeEEEEeCCCC
Confidence 688998777776554443222 1233455777776
No 137
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=26.27 E-value=78 Score=22.90 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=10.1
Q ss_pred ccCCCCCCCceeeeec
Q 021514 243 LACARCSSSGVCLSVD 258 (311)
Q Consensus 243 v~C~~C~GSG~i~~~~ 258 (311)
++|+.| |...+....
T Consensus 4 kPCPFC-G~~~~~~~~ 18 (61)
T PF14354_consen 4 KPCPFC-GSADVLIRQ 18 (61)
T ss_pred cCCCCC-CCcceEeec
Confidence 578888 776666543
No 138
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=26.20 E-value=43 Score=33.48 Aligned_cols=26 Identities=27% Similarity=0.606 Sum_probs=21.0
Q ss_pred cccccccccCccccCCCCCCCceeeeecC
Q 021514 231 KKRCKYCHGSGYLACARCSSSGVCLSVDP 259 (311)
Q Consensus 231 ~k~C~~C~GtG~v~C~~C~GSG~i~~~~~ 259 (311)
...|..|.|.| |..|.++|++..-.+
T Consensus 260 dv~~~~~~g~g---c~~ck~~~WiEilG~ 285 (339)
T PRK00488 260 DVSCFKCGGKG---CRVCKGTGWLEILGC 285 (339)
T ss_pred EEEEeccCCCc---ccccCCCCceEEecc
Confidence 46799999876 999999999886543
No 139
>PLN02643 ADP-glucose phosphorylase
Probab=25.80 E-value=1.1e+02 Score=30.26 Aligned_cols=86 Identities=16% Similarity=0.281 Sum_probs=51.8
Q ss_pred ceEEEeCchhHHHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccccccCCCCC---CCCCCCCCC
Q 021514 65 NFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVIDESGEEEASEMPE---IPSSIPFLP 141 (311)
Q Consensus 65 ~~~~~~~~~~~~d~~~m~~~ei~~ni~~r~~kif~l~eevrrlr~q~~~~~~~~~~~~~~~~~~~~~~---~~s~~p~~~ 141 (311)
...|||+|+-..+|++|..++|.+=|..= .+.+|.|+=+-|||-.-+...-|.+-.--++- +=-++||+|
T Consensus 108 ~eVii~sp~H~~~l~~~~~~~i~~v~~~~-------~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a~~~vP 180 (336)
T PLN02643 108 HDVVIETPVHSVQLSDLPARHIGEVLKAY-------KKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIALPVVP 180 (336)
T ss_pred EEEEEeCCccCCChHHCCHHHHHHHHHHH-------HHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEecCcCC
Confidence 35799999999999999999999866543 33456665555565543332111111112221 112378888
Q ss_pred CCCH---HHHHHHHHHHHH
Q 021514 142 YVTP---KTLKQLYLTSLS 157 (311)
Q Consensus 142 ~~~~---~~~~~~~~~~~~ 157 (311)
+.-. +..+.||.....
T Consensus 181 ~~~~~el~~~~~y~~~~g~ 199 (336)
T PLN02643 181 PSVSARLDGSKEYFEKTGK 199 (336)
T ss_pred hHHHHHHHHHHHHHHHhCC
Confidence 7544 455667766643
No 140
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=24.90 E-value=1.3e+02 Score=26.95 Aligned_cols=60 Identities=18% Similarity=0.404 Sum_probs=30.0
Q ss_pred cCCCCCCCc-eeeeecCCCCCCCCCCCCCCCceeeCCCCCcCceeeCCCCCCceEEeceeeCCCcCCCC
Q 021514 244 ACARCSSSG-VCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGMMMASEHDPRIDPFD 311 (311)
Q Consensus 244 ~C~~C~GSG-~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV~CptC~GtG~v~~sEhD~riDPf~ 311 (311)
.|+.|.+.- .+.....++.+. .......|++|+.+=... .+= ..-++...+.|=++.|||
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~------~~~~~~~c~~c~~~f~~~-e~~-~~~~i~VIKRDG~~v~Fd 62 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGN------AIRRRRECLACGKRFTTF-ERV-ELVPLLVIKKDGRREPFD 62 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCC------ceeeeeeccccCCcceEe-Eec-cCcccEEEecCCcCCCcC
Confidence 578886655 333333332210 122347899888753210 000 000234567888888886
No 141
>PRK04406 hypothetical protein; Provisional
Probab=24.84 E-value=2.5e+02 Score=22.09 Aligned_cols=34 Identities=12% Similarity=0.369 Sum_probs=22.0
Q ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccc
Q 021514 82 QLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLK 117 (311)
Q Consensus 82 ~~~ei~~ni~~r~~kif~l~eevrrlr~q~~~~~~~ 117 (311)
-++++-+=|..-...|=-|-.++|.|+ +||++.+
T Consensus 26 tIe~LN~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~ 59 (75)
T PRK04406 26 TIEELNDALSQQQLLITKMQDQMKYVV--GKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhc
Confidence 356666666666667777777888883 4555544
No 142
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=24.79 E-value=3.1e+02 Score=26.58 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=18.7
Q ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccc
Q 021514 82 QLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKV 118 (311)
Q Consensus 82 ~~~ei~~ni~~r~~kif~l~eevrrlr~q~~~~~~~~ 118 (311)
++++++-+.+.-|..-=.++.-...+|++...+...+
T Consensus 279 ~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~~~~~~ 315 (362)
T TIGR01010 279 DYQRLVLQNELAQQQLKAALTSLQQTRVEADRQQLYL 315 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 4445555555544444455555555555555554333
No 143
>PRK02119 hypothetical protein; Provisional
Probab=24.68 E-value=3.4e+02 Score=21.19 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=24.6
Q ss_pred HHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccc
Q 021514 78 FVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLK 117 (311)
Q Consensus 78 ~~~m~~~ei~~ni~~r~~kif~l~eevrrlr~q~~~~~~~ 117 (311)
|-.-.++++-+=|..-+..|=.|-+++|+|+- ||+..+
T Consensus 20 ~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~--rl~~~~ 57 (73)
T PRK02119 20 FQENLLEELNQALIEQQFVIDKMQVQLRYMAN--KLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhc
Confidence 33344677777777677777778888888853 444433
No 144
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=24.26 E-value=95 Score=23.80 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=28.3
Q ss_pred hHHHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhc
Q 021514 74 TLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKG 115 (311)
Q Consensus 74 ~~~d~~~m~~~ei~~ni~~r~~kif~l~eevrrlr~q~~~~~ 115 (311)
.-+|+-.|.++||++ +|-+|=.|+=|+|-...-|.
T Consensus 14 ig~dLs~lSv~EL~~-------RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 14 IGEDLSLLSVEELEE-------RIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred cCCCchhcCHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 457899999999987 67789999999887665554
No 145
>PHA01745 hypothetical protein
Probab=24.24 E-value=57 Score=32.29 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=28.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccchh
Q 021514 135 SSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTL 173 (311)
Q Consensus 135 s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~fggl~ap~~ 173 (311)
++||-++......++.+..+|.- .+=.|+|||+|+|++
T Consensus 102 ~vIPViH~Y~~e~l~~~ldfysq-y~d~iAfGG~Vp~s~ 139 (306)
T PHA01745 102 RIIPVIHLYPVREVDEAIDFYSQ-YTDYIAFGGIVASSK 139 (306)
T ss_pred ceeeEEeecCHHHHHHHHHHHHh-hhhhhhccccccHHh
Confidence 67888888888888766654443 233788999999973
No 146
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=24.06 E-value=2.6e+02 Score=30.12 Aligned_cols=44 Identities=39% Similarity=0.502 Sum_probs=25.9
Q ss_pred chhHHHHHhhcHHHHHH--HHHhh-----hhhhHHHHHHHHHH-----HHHHhhhc
Q 021514 72 PETLQDFVQMQLKEIED--NIKHR-----RNRIFFLMEELRRL-----RVQQRIKG 115 (311)
Q Consensus 72 ~~~~~d~~~m~~~ei~~--ni~~r-----~~kif~l~eevrrl-----r~q~~~~~ 115 (311)
|=+-+..|+||-+|++| ||.++ =+-|-+.-.|+|-| |.|.+...
T Consensus 124 P~s~~Eia~m~~~el~~~L~~~~~i~~~mi~~i~~~~~Eir~Lr~~~~~l~~~~~~ 179 (582)
T PF03276_consen 124 PVSAQEIAQMQRDELEDVLNFQGQILEQMIDDIGMQQREIRDLRETIQRLQIRGLG 179 (582)
T ss_pred CccHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 44566778888777777 33333 23344444588888 55554444
No 147
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=24.06 E-value=46 Score=19.52 Aligned_cols=11 Identities=36% Similarity=1.087 Sum_probs=5.5
Q ss_pred eCCCCCcCcee
Q 021514 277 RCPNCSGAGKV 287 (311)
Q Consensus 277 ~CptC~G~GkV 287 (311)
+|.+|+..|.+
T Consensus 2 ~C~~C~~~GH~ 12 (18)
T PF00098_consen 2 KCFNCGEPGHI 12 (18)
T ss_dssp BCTTTSCSSSC
T ss_pred cCcCCCCcCcc
Confidence 35555555543
No 148
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=24.03 E-value=35 Score=34.71 Aligned_cols=13 Identities=54% Similarity=1.178 Sum_probs=6.8
Q ss_pred eeeCCCCCcCcee
Q 021514 275 TQRCPNCSGAGKV 287 (311)
Q Consensus 275 ~~~CptC~G~GkV 287 (311)
...||.|+|+|++
T Consensus 390 ~~~Cp~C~G~G~v 402 (414)
T TIGR00757 390 GTVCPHCSGTGIV 402 (414)
T ss_pred cCCCCCCcCeeEE
Confidence 3455555555554
No 149
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.97 E-value=45 Score=27.41 Aligned_cols=9 Identities=44% Similarity=1.324 Sum_probs=5.6
Q ss_pred eeeCCCCCc
Q 021514 275 TQRCPNCSG 283 (311)
Q Consensus 275 ~~~CptC~G 283 (311)
...||.|.|
T Consensus 21 iD~CPrCrG 29 (88)
T COG3809 21 IDYCPRCRG 29 (88)
T ss_pred eeeCCcccc
Confidence 446777766
No 150
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=23.81 E-value=48 Score=25.60 Aligned_cols=17 Identities=53% Similarity=0.628 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhcccc
Q 021514 153 LTSLSFISGIILFGGLI 169 (311)
Q Consensus 153 ~~~~~~~~~~~~fggl~ 169 (311)
+-+.++|+.||+||-|+
T Consensus 10 triVLLISfiIlfgRl~ 26 (59)
T PF11119_consen 10 TRIVLLISFIILFGRLI 26 (59)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45788999999999654
No 151
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=23.71 E-value=41 Score=29.03 Aligned_cols=10 Identities=30% Similarity=0.899 Sum_probs=6.9
Q ss_pred ccccCCCCCC
Q 021514 241 GYLACARCSS 250 (311)
Q Consensus 241 G~v~C~~C~G 250 (311)
....|..|+-
T Consensus 69 ~~~~C~~CG~ 78 (135)
T PRK03824 69 AVLKCRNCGN 78 (135)
T ss_pred eEEECCCCCC
Confidence 4567888863
No 152
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=23.30 E-value=39 Score=26.95 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=10.9
Q ss_pred CcCceeeCCCCCCceEEeceeeC
Q 021514 282 SGAGKVMCPSCLCTGMMMASEHD 304 (311)
Q Consensus 282 ~G~GkV~CptC~GtG~v~~sEhD 304 (311)
.|.|.+.|..|.-.=.......|
T Consensus 42 ~~~~~~~C~~Cg~~~~~~i~~L~ 64 (81)
T PF05129_consen 42 EGIGILSCRVCGESFQTKINPLS 64 (81)
T ss_dssp TTEEEEEESSS--EEEEE--SS-
T ss_pred CCEEEEEecCCCCeEEEccCccC
Confidence 46677788888544333333333
No 153
>PRK11032 hypothetical protein; Provisional
Probab=23.25 E-value=66 Score=29.01 Aligned_cols=28 Identities=18% Similarity=0.436 Sum_probs=20.2
Q ss_pred CceeeCCCCCcCce------e-eCCCCCCceEEec
Q 021514 273 PTTQRCPNCSGAGK------V-MCPSCLCTGMMMA 300 (311)
Q Consensus 273 q~~~~CptC~G~Gk------V-~CptC~GtG~v~~ 300 (311)
.+...|.+|+=.=. + +||.|+++.+...
T Consensus 122 ~G~LvC~~Cg~~~~~~~p~~i~pCp~C~~~~F~R~ 156 (160)
T PRK11032 122 LGNLVCEKCHHHLAFYTPEVLPLCPKCGHDQFQRR 156 (160)
T ss_pred cceEEecCCCCEEEecCCCcCCCCCCCCCCeeeeC
Confidence 35788999976533 3 8999998877643
No 154
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.73 E-value=1.8e+02 Score=27.60 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=24.5
Q ss_pred CCCC--CCCHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhcCCCcccchhh
Q 021514 138 PFLP--YVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFI 188 (311)
Q Consensus 138 p~~~--~~~~~~~~~~~~~~~~~~~~~~~fggl~ap~~e~klglgg~~y~df~ 188 (311)
|+-| .||++.++.+|...-.++.. -.-.||++..||.
T Consensus 187 P~~~~~~Ls~~~~~~L~~~i~~vL~~--------------ai~~gg~~~~~~~ 225 (272)
T TIGR00577 187 PERLANSLSKEECELLHRAIKEVLRK--------------AIEMGGTTIRDYS 225 (272)
T ss_pred cchhhccCCHHHHHHHHHHHHHHHHH--------------HHHcCCCcccccc
Confidence 4444 48999999998776655543 3335677777664
No 155
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=22.66 E-value=35 Score=34.70 Aligned_cols=15 Identities=47% Similarity=1.023 Sum_probs=13.0
Q ss_pred eCCCCCCceEEecee
Q 021514 288 MCPSCLCTGMMMASE 302 (311)
Q Consensus 288 ~CptC~GtG~v~~sE 302 (311)
.||.|+|+|.+...+
T Consensus 392 ~Cp~C~G~G~v~s~~ 406 (414)
T TIGR00757 392 VCPHCSGTGIVKTSE 406 (414)
T ss_pred CCCCCcCeeEEccHH
Confidence 799999999997654
No 156
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=22.58 E-value=29 Score=25.10 Aligned_cols=20 Identities=25% Similarity=0.472 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcccccch
Q 021514 153 LTSLSFISGIILFGGLIAPT 172 (311)
Q Consensus 153 ~~~~~~~~~~~~fggl~ap~ 172 (311)
+.|..+|.++.-||||.+|-
T Consensus 2 Alwlt~vialtClggLasPg 21 (43)
T PF03487_consen 2 ALWLTVVIALTCLGGLASPG 21 (43)
T ss_dssp --------------------
T ss_pred hHHHHHHHHHHHhcccCCCC
Confidence 35667788888999999984
No 157
>PRK00295 hypothetical protein; Provisional
Probab=22.57 E-value=2.9e+02 Score=21.27 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=21.9
Q ss_pred HHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021514 78 FVQMQLKEIEDNIKHRRNRIFFLMEELRRLRV 109 (311)
Q Consensus 78 ~~~m~~~ei~~ni~~r~~kif~l~eevrrlr~ 109 (311)
|..--++++-+=|..-...|=.|-.++|.|+-
T Consensus 16 ~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 16 FQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444667777666666777777888888843
No 158
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=22.49 E-value=59 Score=20.83 Aligned_cols=8 Identities=50% Similarity=1.306 Sum_probs=4.6
Q ss_pred eeeCCCCC
Q 021514 275 TQRCPNCS 282 (311)
Q Consensus 275 ~~~CptC~ 282 (311)
.-.||+|+
T Consensus 16 ~f~CPnCG 23 (24)
T PF07754_consen 16 PFPCPNCG 23 (24)
T ss_pred eEeCCCCC
Confidence 45666664
No 159
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=22.15 E-value=96 Score=20.93 Aligned_cols=13 Identities=23% Similarity=0.838 Sum_probs=7.8
Q ss_pred ccCCCCCCCceee
Q 021514 243 LACARCSSSGVCL 255 (311)
Q Consensus 243 v~C~~C~GSG~i~ 255 (311)
..|..|+|.|.+.
T Consensus 4 ~~C~~C~~~~i~~ 16 (33)
T PF08792_consen 4 KKCSKCGGNGIVN 16 (33)
T ss_pred eEcCCCCCCeEEE
Confidence 3566666766553
No 160
>cd01702 PolY_Pol_eta DNA Polymerase eta. Pol eta, also called Rad30A, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Unlike other Y-family members, Pol eta can efficiently and accurately replicate DNA past UV-induced lesions. Its activity is initiated by two simultaneous interactions: the PIP box in pol eta interacting with PCNA, and the UBZ (ubiquitin-binding zinc finger) in pol eta interacting with monoubiquitin attached to PCNA. Pol eta is more efficient in copying damaged DNA than undamaged DNA and seems to recognize when a lesion has been passed, facilitating a lesion-dependent dissociation from the DNA.
Probab=21.98 E-value=3.5e+02 Score=26.74 Aligned_cols=52 Identities=19% Similarity=0.075 Sum_probs=34.8
Q ss_pred CCCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHhc----ccccchhhhhhcCCC
Q 021514 130 MPEIPSSIPFLPYVTP--KTLKQLYLTSLSFISGIILFG----GLIAPTLELKLGLGG 181 (311)
Q Consensus 130 ~~~~~s~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~fg----gl~ap~~e~klglgg 181 (311)
...+-+..-|-+++++ +.++.+-...+.-++.=+--- ++.+-.+.||+....
T Consensus 250 ~ksi~~~~tf~~~~~~~~~~l~~~l~~L~~~l~~rL~~~~~~~~~~~~~v~v~lr~~~ 307 (359)
T cd01702 250 PKSMGSSKNFPGKTALSTEDVQHWLLVLASELNSRLEDDRYENNRRPKTLVLSLRQRG 307 (359)
T ss_pred CceeeeeeecCCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcCceeeEEEEEEEECC
Confidence 3446667788888765 566666655555555544443 889999999987543
No 161
>PRK02793 phi X174 lysis protein; Provisional
Probab=21.69 E-value=3.3e+02 Score=21.18 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=24.7
Q ss_pred HhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccc
Q 021514 79 VQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLK 117 (311)
Q Consensus 79 ~~m~~~ei~~ni~~r~~kif~l~eevrrlr~q~~~~~~~ 117 (311)
..--++++-+=|..-+..|--|-++||.|+- ||+..+
T Consensus 20 Qe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~--rl~~~~ 56 (72)
T PRK02793 20 QEITIEELNVTVTAHEMEMAKLRDHLRLLTE--KLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhc
Confidence 3334667777777777778888888998854 444433
No 162
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=21.49 E-value=56 Score=25.58 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=10.2
Q ss_pred eeeCCCCCCceEEeceee
Q 021514 286 KVMCPSCLCTGMMMASEH 303 (311)
Q Consensus 286 kV~CptC~GtG~v~~sEh 303 (311)
++.|..|...|-...+|+
T Consensus 27 ~v~C~~CgA~~~~~~te~ 44 (64)
T PRK09710 27 RAKCNGCESRTGYGGSEK 44 (64)
T ss_pred EEEcCCCCcCcccccCHH
Confidence 446666666655554443
No 163
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=21.23 E-value=60 Score=22.60 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=8.7
Q ss_pred ccCCCCCCCceee
Q 021514 243 LACARCSSSGVCL 255 (311)
Q Consensus 243 v~C~~C~GSG~i~ 255 (311)
.+|+.|.|+..-.
T Consensus 4 ~pCP~CGG~DrFr 16 (37)
T smart00778 4 GPCPNCGGSDRFR 16 (37)
T ss_pred cCCCCCCCccccc
Confidence 4677777766554
No 164
>PHA03029 hypothetical protein; Provisional
Probab=21.22 E-value=73 Score=26.04 Aligned_cols=19 Identities=26% Similarity=0.770 Sum_probs=14.7
Q ss_pred HHHHHHHHhhhhhhHHHHH
Q 021514 84 KEIEDNIKHRRNRIFFLME 102 (311)
Q Consensus 84 ~ei~~ni~~r~~kif~l~e 102 (311)
..|.+||+|||.-....|.
T Consensus 39 aai~qnirsrrkg~ywfln 57 (92)
T PHA03029 39 AAIDQNIRSRRKGLYWFLN 57 (92)
T ss_pred HHHHHHHHHHhhhHHHHHH
Confidence 4578999999987766554
No 165
>PHA02683 ORF078 thioredoxin-like protein; Provisional
Probab=21.18 E-value=73 Score=25.68 Aligned_cols=40 Identities=30% Similarity=0.515 Sum_probs=27.3
Q ss_pred EEeCchhHHHHHhhc---HHHHHHHHHhhhhhhHH---HHHHHHHH
Q 021514 68 IIEGPETLQDFVQMQ---LKEIEDNIKHRRNRIFF---LMEELRRL 107 (311)
Q Consensus 68 ~~~~~~~~~d~~~m~---~~ei~~ni~~r~~kif~---l~eevrrl 107 (311)
|.|.+|+++=...=| ++-|.+=..+=|||-|+ |-+|+||.
T Consensus 28 l~eD~~~ikm~L~sqP~k~~iLk~FL~~~RNKt~~~kiLD~EirRv 73 (75)
T PHA02683 28 INEDRENIRMVLESQPNKLRILKEFLATCRNKTFIYKILDDEIRRV 73 (75)
T ss_pred HHcCHHHHHHHHHcCccHHHHHHHHHHHHhccchhhhhcCHHHHHh
Confidence 556677665444444 44566677788999884 77999984
No 166
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=20.80 E-value=54 Score=27.46 Aligned_cols=9 Identities=56% Similarity=1.612 Sum_probs=4.8
Q ss_pred eeCCCCCcC
Q 021514 276 QRCPNCSGA 284 (311)
Q Consensus 276 ~~CptC~G~ 284 (311)
..||.|++.
T Consensus 88 ~~CP~Cgs~ 96 (114)
T PRK03681 88 RRCPQCHGD 96 (114)
T ss_pred CcCcCcCCC
Confidence 346666554
No 167
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=20.79 E-value=1.4e+02 Score=31.14 Aligned_cols=37 Identities=32% Similarity=0.433 Sum_probs=25.6
Q ss_pred HHHHHhhcHHHHHHH--------HHhh--hhhhHHHHHHHHHHHHHHh
Q 021514 75 LQDFVQMQLKEIEDN--------IKHR--RNRIFFLMEELRRLRVQQR 112 (311)
Q Consensus 75 ~~d~~~m~~~ei~~n--------i~~r--~~kif~l~eevrrlr~q~~ 112 (311)
-|||||| ++|||.| |.+. -|-|=+|.-||-||--..|
T Consensus 443 kqd~akm-l~e~~~~~~~e~le~fml~~GEnivd~lG~EvDRlEkel~ 489 (503)
T KOG2802|consen 443 KQDFAKM-LQEIQEVKTPEELETFMLKHGENIVDTLGAEVDRLEKELK 489 (503)
T ss_pred HHHHHHH-HHHHHhcCCHHHHHHHHHHcchHHHHHhhhHHHHHHHHHH
Confidence 4799998 6777754 4433 4667788899998864433
No 168
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=20.77 E-value=48 Score=33.19 Aligned_cols=22 Identities=36% Similarity=0.900 Sum_probs=17.6
Q ss_pred ceeeCCCCCcCceeeCCCCCCceEE
Q 021514 274 TTQRCPNCSGAGKVMCPSCLCTGMM 298 (311)
Q Consensus 274 ~~~~CptC~G~GkV~CptC~GtG~v 298 (311)
....|+.|+|.| |+.|+++|-+
T Consensus 259 vdv~~~~~~g~g---c~~ck~~~Wi 280 (339)
T PRK00488 259 VDVSCFKCGGKG---CRVCKGTGWL 280 (339)
T ss_pred EEEEEeccCCCc---ccccCCCCce
Confidence 356799999877 9999988754
No 169
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=20.67 E-value=67 Score=37.54 Aligned_cols=20 Identities=35% Similarity=1.072 Sum_probs=15.7
Q ss_pred eeCCCCCcCce--eeCCCCCCc
Q 021514 276 QRCPNCSGAGK--VMCPSCLCT 295 (311)
Q Consensus 276 ~~CptC~G~Gk--V~CptC~Gt 295 (311)
..|+.|+..-. ..|+.|...
T Consensus 680 ~fCP~CGs~te~vy~CPsCGae 701 (1337)
T PRK14714 680 NRCPDCGTHTEPVYVCPDCGAE 701 (1337)
T ss_pred ccCcccCCcCCCceeCccCCCc
Confidence 48999998763 379999763
No 170
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=20.62 E-value=53 Score=21.68 Aligned_cols=18 Identities=33% Similarity=0.898 Sum_probs=12.5
Q ss_pred eeCCCCCcCceeeCCCCC
Q 021514 276 QRCPNCSGAGKVMCPSCL 293 (311)
Q Consensus 276 ~~CptC~G~GkV~CptC~ 293 (311)
..|..|+..++-+|+.|.
T Consensus 3 ~~C~vC~~~~kY~Cp~C~ 20 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCG 20 (30)
T ss_dssp EEETSSSSEESEE-TTT-
T ss_pred CCCccCcCCCEEECCCcC
Confidence 567788887777888885
No 171
>PRK00846 hypothetical protein; Provisional
Probab=20.46 E-value=4.3e+02 Score=21.21 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=24.1
Q ss_pred HHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccc
Q 021514 78 FVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLK 117 (311)
Q Consensus 78 ~~~m~~~ei~~ni~~r~~kif~l~eevrrlr~q~~~~~~~ 117 (311)
|..--++++-+=|..-+..|=.|-+.+|+|+- |||..+
T Consensus 24 fQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~--rL~~~~ 61 (77)
T PRK00846 24 FQEQALTELSEALADARLTGARNAELIRHLLE--DLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhc
Confidence 33334666666666666666777777887764 566654
No 172
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=20.30 E-value=2.4e+02 Score=26.81 Aligned_cols=75 Identities=21% Similarity=0.403 Sum_probs=0.0
Q ss_pred CCCCC--CCHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhcCCCcccchhhhccCcccccccCCceeeeeeccchhhh
Q 021514 138 PFLPY--VTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVI 215 (311)
Q Consensus 138 p~~~~--~~~~~~~~~~~~~~~~~~~~~~fggl~ap~~e~klglgg~~y~df~~s~~lp~qLs~vD~IvAsF~GGaVGvi 215 (311)
|+-|. ||++.++.+|...-.+..- -.-.||+++.||.... |..|
T Consensus 186 P~~~~~~l~~~~~~~l~~a~~~vl~~--------------ai~~gg~~~~~~~~~~------------------g~~g-- 231 (272)
T PRK14810 186 PQRLASSLSRERLRKLHDAIGEVLRE--------------AIELGGSSVSDYVDAE------------------GRSG-- 231 (272)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHH--------------HHHcCCCccccccCCC------------------CCCC--
Q ss_pred hhhhhhhcceeecccccccccccc---------CccccCCCCC
Q 021514 216 SALMLIEANNVEQQEKKRCKYCHG---------SGYLACARCS 249 (311)
Q Consensus 216 sal~vvE~nnvk~q~~k~C~~C~G---------tG~v~C~~C~ 249 (311)
.+..-..+..+..+.|+.|.+ .+..-|+.|.
T Consensus 232 ---~~~~~~~Vy~R~g~pCprCG~~I~~~~~~gR~t~~CP~CQ 271 (272)
T PRK14810 232 ---FFQLSHRVYQRTGEPCLNCKTPIRRVVVAGRSSHYCPHCQ 271 (272)
T ss_pred ---cchhhEeecCCCCCcCCCCCCeeEEEEECCCccEECcCCc
No 173
>PHA00626 hypothetical protein
Probab=20.08 E-value=90 Score=24.09 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=9.9
Q ss_pred eeCCCCCc-CceeeCCCCC
Q 021514 276 QRCPNCSG-AGKVMCPSCL 293 (311)
Q Consensus 276 ~~CptC~G-~GkV~CptC~ 293 (311)
.+|..|.+ +..-.|+.|.
T Consensus 12 vrcg~cr~~snrYkCkdCG 30 (59)
T PHA00626 12 AKEKTMRGWSDDYVCCDCG 30 (59)
T ss_pred eeeceecccCcceEcCCCC
Confidence 35555555 4555666663
No 174
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=20.05 E-value=77 Score=29.53 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=16.2
Q ss_pred cccccccccccCcc--ccCC-----CCCCCcee
Q 021514 229 QEKKRCKYCHGSGY--LACA-----RCSSSGVC 254 (311)
Q Consensus 229 q~~k~C~~C~GtG~--v~C~-----~C~GSG~i 254 (311)
.+...|..|...|- ..|+ .|+-.|..
T Consensus 58 ~~~~~C~nCg~~GH~~~DCP~~iC~~C~~~~H~ 90 (190)
T COG5082 58 EENPVCFNCGQNGHLRRDCPHSICYNCSWDGHR 90 (190)
T ss_pred ccccccchhcccCcccccCChhHhhhcCCCCcc
Confidence 35678888887774 4555 77434433
No 175
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=20.04 E-value=1.3e+02 Score=26.26 Aligned_cols=34 Identities=26% Similarity=0.240 Sum_probs=25.0
Q ss_pred chhHHHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021514 72 PETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRV 109 (311)
Q Consensus 72 ~~~~~d~~~m~~~ei~~ni~~r~~kif~l~eevrrlr~ 109 (311)
--|+.++.+|.=+|+++.... .----||+|||.-
T Consensus 90 ~~tLe~Llemsd~el~~~l~~----~g~~~EE~rRL~~ 123 (129)
T PF13543_consen 90 VLTLEALLEMSDEELKEILNR----CGAREEECRRLCR 123 (129)
T ss_pred hcCHHHHHhCCHHHHHHHHHH----hCCCHHHHHHHHH
Confidence 457889999998888886554 2233799999863
Done!