Query 021514
Match_columns 311
No_of_seqs 216 out of 1346
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 05:14:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctt_A DNAJ homolog subfamily 99.3 2.5E-12 8.4E-17 103.0 6.4 84 190-300 3-95 (104)
2 1nlt_A Protein YDJ1, mitochond 99.1 1.6E-11 5.4E-16 112.2 2.0 99 188-309 11-120 (248)
3 1exk_A DNAJ protein; extended 99.0 1.2E-10 4.2E-15 88.1 4.6 65 225-300 5-78 (79)
4 1exk_A DNAJ protein; extended 97.9 5.3E-06 1.8E-10 62.5 3.5 42 242-299 11-63 (79)
5 2ctt_A DNAJ homolog subfamily 97.7 2E-05 6.9E-10 62.7 4.1 43 242-300 28-81 (104)
6 3lcz_A YCZA, inhibitor of trap 97.3 0.0001 3.4E-09 53.5 2.3 28 274-301 8-38 (53)
7 1nlt_A Protein YDJ1, mitochond 97.1 0.00019 6.7E-09 65.3 2.6 40 231-287 54-108 (248)
8 2bx9_A Anti-trap, AT, tryptoph 96.9 0.00063 2.1E-08 49.3 3.3 26 275-300 9-37 (53)
9 3lcz_A YCZA, inhibitor of trap 96.5 0.0013 4.6E-08 47.5 2.5 26 231-256 9-37 (53)
10 2bx9_A Anti-trap, AT, tryptoph 96.4 0.0015 5.3E-08 47.2 2.5 25 232-256 10-37 (53)
11 2fiy_A Protein FDHE homolog; F 82.6 0.37 1.3E-05 45.5 1.2 23 288-310 255-277 (309)
12 3pmq_A Decaheme cytochrome C M 59.9 1.3 4.5E-05 46.0 -1.2 82 224-307 184-293 (669)
13 3nyb_B Protein AIR2; polya RNA 57.5 5.8 0.0002 30.6 2.4 50 231-291 5-64 (83)
14 3pmq_A Decaheme cytochrome C M 52.4 3.6 0.00012 42.8 0.6 10 231-240 211-220 (669)
15 2a51_A Nucleocapsid protein; s 52.2 7.8 0.00027 25.3 2.1 32 244-287 2-33 (39)
16 2ec7_A GAG polyprotein (PR55GA 44.2 13 0.00044 25.5 2.3 37 243-291 7-45 (49)
17 1pft_A TFIIB, PFTFIIBN; N-term 42.6 12 0.00039 25.6 1.8 8 285-292 23-30 (50)
18 3ts2_A Protein LIN-28 homolog 42.5 15 0.00052 30.8 2.9 39 243-292 98-138 (148)
19 2ihx_A Nucleocapsid (NC) prote 42.3 17 0.00058 25.9 2.7 47 240-293 2-50 (61)
20 1a1t_A Nucleocapsid protein; s 42.0 15 0.00051 25.4 2.3 16 275-290 33-50 (55)
21 1qo8_A Flavocytochrome C3 fuma 40.9 3.5 0.00012 40.3 -1.5 60 233-296 14-86 (566)
22 3pih_A Uvrabc system protein A 40.7 14 0.00049 39.5 3.0 22 288-309 275-296 (916)
23 2lli_A Protein AIR2; RNA surve 35.0 24 0.00082 28.1 2.8 16 276-291 65-82 (124)
24 1y0p_A Fumarate reductase flav 33.0 5 0.00017 39.2 -1.9 65 233-298 13-91 (571)
25 1btq_A BAND 3 anion transport 29.9 15 0.00052 23.0 0.6 18 153-170 8-25 (26)
26 3h3g_B Parathyroid hormone-rel 28.7 24 0.00082 21.9 1.4 14 91-104 5-20 (24)
27 2kz3_A Putative uncharacterize 27.9 30 0.001 26.7 2.1 32 72-110 25-56 (83)
28 2apo_B Ribosome biogenesis pro 27.0 41 0.0014 24.8 2.6 34 275-311 6-40 (60)
29 2aus_D NOP10, ribosome biogene 26.8 40 0.0014 24.9 2.6 34 275-311 5-39 (60)
30 3j20_Y 30S ribosomal protein S 26.6 46 0.0016 23.3 2.8 8 275-282 37-44 (50)
31 2ygr_A Uvrabc system protein A 26.3 33 0.0011 37.2 2.9 16 288-303 302-317 (993)
32 2r6f_A Excinuclease ABC subuni 26.3 27 0.00092 37.8 2.2 22 276-297 754-787 (972)
33 2vf7_A UVRA2, excinuclease ABC 25.1 46 0.0016 35.3 3.7 21 73-93 307-327 (842)
34 2r6f_A Excinuclease ABC subuni 24.8 47 0.0016 36.0 3.7 33 244-286 755-787 (972)
35 2bl6_A Nucleocapsid protein P1 24.4 32 0.0011 22.0 1.5 12 276-287 20-31 (37)
36 1dl6_A Transcription factor II 24.4 51 0.0017 23.5 2.7 23 275-300 11-41 (58)
37 1svd_M Ribulose bisphosphate c 24.3 54 0.0018 26.7 3.2 15 137-151 16-30 (110)
38 3i2t_A Epidermal growth factor 24.0 51 0.0017 33.3 3.6 18 233-250 483-502 (551)
39 2vf7_A UVRA2, excinuclease ABC 23.6 33 0.0011 36.4 2.2 22 276-297 639-672 (842)
40 2hf1_A Tetraacyldisaccharide-1 22.4 34 0.0012 25.5 1.5 8 285-292 25-32 (68)
41 2jr6_A UPF0434 protein NMA0874 21.8 35 0.0012 25.4 1.5 8 285-292 25-32 (68)
42 2cqf_A RNA-binding protein LIN 20.7 53 0.0018 23.5 2.2 16 275-290 29-46 (63)
43 2pk7_A Uncharacterized protein 20.6 39 0.0013 25.2 1.5 8 285-292 25-32 (69)
44 2jny_A Uncharacterized BCR; st 20.4 41 0.0014 25.0 1.6 8 285-292 27-34 (67)
No 1
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.5e-12 Score=103.00 Aligned_cols=84 Identities=21% Similarity=0.425 Sum_probs=67.6
Q ss_pred ccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCC
Q 021514 190 NMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTS 263 (311)
Q Consensus 190 s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g 263 (311)
+.++++.|++.|. |+|.. ..+++++...|..|+|+|. .+|+.|+|+|++...+.
T Consensus 3 ~~~~~l~vslee~----~~G~~------------~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G---- 62 (104)
T 2ctt_A 3 SGSSGMELTFNQA----AKGVN------------KEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTG---- 62 (104)
T ss_dssp CCCCCCCCCCSSC----CSSSC------------TTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEET----
T ss_pred ceEEEEEEEHHHH----cCCCE------------EEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeC----
Confidence 5677888888877 77876 3355677889999999984 68999999999876431
Q ss_pred CCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEec
Q 021514 264 NASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMA 300 (311)
Q Consensus 264 ~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~ 300 (311)
.++.+.+|+.|+|+|++ +|+.|+|.|++..
T Consensus 63 -------~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~ 95 (104)
T 2ctt_A 63 -------PFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQ 95 (104)
T ss_dssp -------TEEEEEECSSSSSSSEECSSCCSSSSSCSEECC
T ss_pred -------CEEEEEECCcCCCcceECCCcCCCCCCeeEEEE
Confidence 13457899999999998 8999999998853
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.10 E-value=1.6e-11 Score=112.19 Aligned_cols=99 Identities=19% Similarity=0.486 Sum_probs=73.7
Q ss_pred hhccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc-----ccCCCCCCCceeeeecCCCC
Q 021514 188 IRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY-----LACARCSSSGVCLSVDPIST 262 (311)
Q Consensus 188 ~~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~-----v~C~~C~GSG~i~~~~~~s~ 262 (311)
..++++++.|++.|- |+|.. ..++..+...|..|+|+|. .+|+.|+|+|++...++.+
T Consensus 11 g~d~~~~l~vslee~----~~G~~------------k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g- 73 (248)
T 1nlt_A 11 GKDIKHEISASLEEL----YKGRT------------AKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMG- 73 (248)
T ss_dssp CCCEEEEEEECTTHH----HHCEE------------EEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESS-
T ss_pred CCCEEEEEEecHHHh----cCCce------------EEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecC-
Confidence 345666677776665 66665 4566778889999999995 6899999999987655442
Q ss_pred CCCCCCCCCCCceeeCCCCCcCcee-----eCCCCCCceEEece-eeCCCcCC
Q 021514 263 SNASNGPLRVPTTQRCPNCSGAGKV-----MCPSCLCTGMMMAS-EHDPRIDP 309 (311)
Q Consensus 263 g~g~c~~~~~q~~~~CptC~G~GkV-----~CptC~GtG~v~~s-EhD~riDP 309 (311)
++.++.+.+|+.|+|+|++ +|+.|+|.|.+... ..++.|.|
T Consensus 74 ------~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~ 120 (248)
T 1nlt_A 74 ------PMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEP 120 (248)
T ss_dssp ------SEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECT
T ss_pred ------ceEEEEEEcCCCCCCcCEEeccCCCCcccCCCceEeeeEEEEEEECC
Confidence 1234568899999999964 79999999998644 45555544
No 3
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.05 E-value=1.2e-10 Score=88.12 Aligned_cols=65 Identities=29% Similarity=0.682 Sum_probs=53.3
Q ss_pred eeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCc
Q 021514 225 NVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCT 295 (311)
Q Consensus 225 nvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~Gt 295 (311)
.+++.+...|+.|+|+|. .+|+.|+|+|.+...+. .++...+|+.|+|+|++ +|+.|+|.
T Consensus 5 ~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g-----------~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 73 (79)
T 1exk_A 5 EIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQG-----------FFAVQQTCPHCQGRGTLIKDPCNKCHGH 73 (79)
T ss_dssp SCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEET-----------TEEEEEECTTTTTSSEECSSBCGGGTTS
T ss_pred EEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEcC-----------CCEEeeECcCCCCccEECCCcCCCCCCe
Confidence 455678889999999995 58999999999875331 12356799999999998 89999999
Q ss_pred eEEec
Q 021514 296 GMMMA 300 (311)
Q Consensus 296 G~v~~ 300 (311)
|++..
T Consensus 74 G~~~~ 78 (79)
T 1exk_A 74 GRVER 78 (79)
T ss_dssp SEEEC
T ss_pred EEEee
Confidence 99853
No 4
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.93 E-value=5.3e-06 Score=62.47 Aligned_cols=42 Identities=36% Similarity=0.892 Sum_probs=34.8
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEe
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMM 299 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~ 299 (311)
...|+.|+|+|.... ....+|+.|+|+|++ +|+.|.|+|.+.
T Consensus 11 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 63 (79)
T 1exk_A 11 LEECDVCHGSGAKPG----------------TQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI 63 (79)
T ss_dssp EEECGGGTTTSBCSS----------------SCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred ceECCCCcccccCCC----------------ccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC
Confidence 468999999997531 135799999999965 799999999985
No 5
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=2e-05 Score=62.68 Aligned_cols=43 Identities=28% Similarity=0.627 Sum_probs=35.1
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEec
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMMA 300 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~~ 300 (311)
...|..|+|+|... +....+|+.|+|+|++ .|+.|.|+|++..
T Consensus 28 ~~~C~~C~G~G~~~----------------g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~ 81 (104)
T 2ctt_A 28 MDTCERCNGKGNEP----------------GTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII 81 (104)
T ss_dssp CEECSSSSSSSSCT----------------TCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS
T ss_pred eeECCCCcCCccCC----------------CCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC
Confidence 47899999999743 1236899999999964 7999999999863
No 6
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.28 E-value=0.0001 Score=53.50 Aligned_cols=28 Identities=39% Similarity=1.122 Sum_probs=24.2
Q ss_pred ceeeCCCCCcCcee---eCCCCCCceEEece
Q 021514 274 TTQRCPNCSGAGKV---MCPSCLCTGMMMAS 301 (311)
Q Consensus 274 ~~~~CptC~G~GkV---~CptC~GtG~v~~s 301 (311)
.+.+|++|+|+|++ +|+.|+|+|.+...
T Consensus 8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 8 LETTCPNCNGSGREEPEPCPKCLGKGVILTA 38 (53)
T ss_dssp HEEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred eeccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence 47899999999996 89999999988654
No 7
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=97.09 E-value=0.00019 Score=65.30 Aligned_cols=40 Identities=30% Similarity=0.815 Sum_probs=32.5
Q ss_pred cccccccccCcc---------------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 231 KKRCKYCHGSGY---------------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 231 ~k~C~~C~GtG~---------------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
...|+.|+|+|. .+|+.|+|+|.+.. ...+|+.|+|.|.+
T Consensus 54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~-----------------~~~~C~~C~G~g~~ 108 (248)
T 1nlt_A 54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID-----------------PKDRCKSCNGKKVE 108 (248)
T ss_dssp CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC-----------------TTSBCSSSTTSCEE
T ss_pred CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEec-----------------cCCCCcccCCCceE
Confidence 368999999985 37999999998752 25789999999975
No 8
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.90 E-value=0.00063 Score=49.29 Aligned_cols=26 Identities=35% Similarity=1.039 Sum_probs=19.3
Q ss_pred eeeCCCCCcCcee---eCCCCCCceEEec
Q 021514 275 TQRCPNCSGAGKV---MCPSCLCTGMMMA 300 (311)
Q Consensus 275 ~~~CptC~G~GkV---~CptC~GtG~v~~ 300 (311)
..+|+.|+|+|++ +|+.|+|+|.+..
T Consensus 9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 9 EVACPKCERAGEIEGTPCPACSGKGVILT 37 (53)
T ss_dssp EEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred cccCCCCcceeccCCCCCccCCCCccEEE
Confidence 5677777777765 7888888887754
No 9
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=96.47 E-value=0.0013 Score=47.55 Aligned_cols=26 Identities=38% Similarity=0.938 Sum_probs=18.5
Q ss_pred cccccccccCcc---ccCCCCCCCceeee
Q 021514 231 KKRCKYCHGSGY---LACARCSSSGVCLS 256 (311)
Q Consensus 231 ~k~C~~C~GtG~---v~C~~C~GSG~i~~ 256 (311)
...|+.|+|+|. .+|+.|+|+|.+..
T Consensus 9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 9 ETTCPNCNGSGREEPEPCPKCLGKGVILT 37 (53)
T ss_dssp EEECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred eccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence 347888887776 46777777777654
No 10
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.41 E-value=0.0015 Score=47.23 Aligned_cols=25 Identities=36% Similarity=0.816 Sum_probs=15.3
Q ss_pred ccccccccCcc---ccCCCCCCCceeee
Q 021514 232 KRCKYCHGSGY---LACARCSSSGVCLS 256 (311)
Q Consensus 232 k~C~~C~GtG~---v~C~~C~GSG~i~~ 256 (311)
..|+.|+|+|. .+|+.|+|+|.+..
T Consensus 10 ~~C~~C~GsG~~~~~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 10 VACPKCERAGEIEGTPCPACSGKGVILT 37 (53)
T ss_dssp EECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred ccCCCCcceeccCCCCCccCCCCccEEE
Confidence 36666666665 35666666666553
No 11
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=82.64 E-value=0.37 Score=45.54 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.4
Q ss_pred eCCCCCCceEEeceeeCCCcCCC
Q 021514 288 MCPSCLCTGMMMASEHDPRIDPF 310 (311)
Q Consensus 288 ~CptC~GtG~v~~sEhD~riDPf 310 (311)
.|.+|++.=++...+.|+.+||+
T Consensus 255 ~C~~C~~YlK~~~~~~d~~~dp~ 277 (309)
T 2fiy_A 255 TCPSCQGYLKQFYLEFDRHADAL 277 (309)
T ss_dssp EETTTTEEEEEEETTTCTTCCHH
T ss_pred EcccccchHhhhhhccCCCCCcc
Confidence 79999998888888999999985
No 12
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=59.87 E-value=1.3 Score=46.05 Aligned_cols=82 Identities=13% Similarity=0.226 Sum_probs=47.6
Q ss_pred ceeeccccccccccccCcc---------ccCCCCCCCceeeeecCCCCCCCCC---CC-CCCCceeeCCCCCcCce----
Q 021514 224 NNVEQQEKKRCKYCHGSGY---------LACARCSSSGVCLSVDPISTSNASN---GP-LRVPTTQRCPNCSGAGK---- 286 (311)
Q Consensus 224 nnvk~q~~k~C~~C~GtG~---------v~C~~C~GSG~i~~~~~~s~g~g~c---~~-~~~q~~~~CptC~G~Gk---- 286 (311)
..+++.+...|..|||+|. .+|..|||+........ ....+. .. ...+....|..|+..+.
T Consensus 184 k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~--~~~~~iH~iH~G~fP~~~~~C~~CH~~~~~la~ 261 (669)
T 3pmq_A 184 YTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAAD--IFPQMIHSKHLTGFPQSISNCQTCHADNPDLAD 261 (669)
T ss_dssp CCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSC--SHHHHHHHHTTSSCSSCTTCCTTTSCCCTTCCS
T ss_pred eEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccc--cccceeeeeeccCCCCccCcchhhcCCcccccc
Confidence 3456678889999999763 58999999942211100 000000 00 01134678999998875
Q ss_pred ----------eeCCCCCCceEE-eceeeCCCc
Q 021514 287 ----------VMCPSCLCTGMM-MASEHDPRI 307 (311)
Q Consensus 287 ----------V~CptC~GtG~v-~~sEhD~ri 307 (311)
..|..|+...-. ....|++..
T Consensus 262 ~~~w~~~ps~~aC~sCH~~~~f~~g~~H~~~~ 293 (669)
T 3pmq_A 262 RQNWYRVPTMEACGACHTQINFPAGQGHPAQT 293 (669)
T ss_dssp CSCTTTCCCHHHHHHHCCSCBTTTTBSSCCCS
T ss_pred ccccccCCchhhhhhccCCcccccccCCcccC
Confidence 269999965422 233465443
No 13
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=57.52 E-value=5.8 Score=30.64 Aligned_cols=50 Identities=20% Similarity=0.334 Sum_probs=24.3
Q ss_pred cccccccccCcc--------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee--eCCC
Q 021514 231 KKRCKYCHGSGY--------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV--MCPS 291 (311)
Q Consensus 231 ~k~C~~C~GtG~--------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV--~Cpt 291 (311)
.+.|..|...|- .+|..|...|.+...... ......|.+|+..|.+ -|+.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~-----------p~~~~~CYnCG~~GH~~rdC~~ 64 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVL-----------PFHTIYCYNCGGKGHFGDDCKE 64 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGGTCCCCBC------------------------CCCBCSSSSCBSSCGGGCSS
T ss_pred cCCCCCCCCCCCccccCCCcccccccccCCcccccccC-----------CCCCCeecccCCCCcCcccCCc
Confidence 456777777663 246666666554321100 0134678888888877 6765
No 14
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=52.42 E-value=3.6 Score=42.83 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=6.2
Q ss_pred cccccccccC
Q 021514 231 KKRCKYCHGS 240 (311)
Q Consensus 231 ~k~C~~C~Gt 240 (311)
.+.|..|||+
T Consensus 211 ~~tC~tCHGs 220 (669)
T 3pmq_A 211 VETCVTCHNS 220 (669)
T ss_dssp SSCSTTTSST
T ss_pred CccCCCCCCC
Confidence 4566666665
No 15
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=52.25 E-value=7.8 Score=25.31 Aligned_cols=32 Identities=25% Similarity=0.590 Sum_probs=18.4
Q ss_pred cCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 244 ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 244 ~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
.|..|...|..... +.......|..|+..|.+
T Consensus 2 ~C~~Cg~~GH~a~~------------C~~~~~~~C~~Cg~~GH~ 33 (39)
T 2a51_A 2 TCFNCGKPGHTARM------------CRQPRQEGCWNCGSKEHR 33 (39)
T ss_dssp BCTTTCCBSSCTTT------------CCSCCCSSCTTTCCSSSC
T ss_pred eeeccCCCCccccc------------CCCCCCCccccCCCCCCc
Confidence 57777666655421 112224578888877765
No 16
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=44.23 E-value=13 Score=25.46 Aligned_cols=37 Identities=32% Similarity=0.755 Sum_probs=21.0
Q ss_pred ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee--eCCC
Q 021514 243 LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV--MCPS 291 (311)
Q Consensus 243 v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV--~Cpt 291 (311)
..|..|...|..... |.......|..|+..|.+ .|+.
T Consensus 7 ~~C~~Cg~~GH~a~~------------C~~~~~~~C~~Cg~~GH~~~~C~~ 45 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQ------------CRAPRRQGCWKCGKTGHVMAKCPE 45 (49)
T ss_dssp CBCTTTCCBTCCTTT------------CCCSSCCSCSSSCCSSCCGGGCCS
T ss_pred CeeeecCCCCcChhh------------CcCCCCCeeCcCCCcCCccCCCcC
Confidence 456677666655421 112224568888887766 4653
No 17
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=42.62 E-value=12 Score=25.60 Aligned_cols=8 Identities=38% Similarity=1.493 Sum_probs=5.2
Q ss_pred ceeeCCCC
Q 021514 285 GKVMCPSC 292 (311)
Q Consensus 285 GkV~CptC 292 (311)
|...|+.|
T Consensus 23 gelvC~~C 30 (50)
T 1pft_A 23 GEIVCAKC 30 (50)
T ss_dssp TEEEESSS
T ss_pred CeEECccc
Confidence 55567777
No 18
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=42.54 E-value=15 Score=30.77 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=26.0
Q ss_pred ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee--eCCCC
Q 021514 243 LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV--MCPSC 292 (311)
Q Consensus 243 v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV--~CptC 292 (311)
..|.+|...|.+... |.. ......|..|+..|.+ -|+.-
T Consensus 98 ~~C~~Cg~~GH~a~~---------C~~--~~~~~~C~~Cg~~GH~~r~Cp~~ 138 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKE---------CKL--PPQPKKCHFCQSINHMVASCPLK 138 (148)
T ss_dssp CCCTTTCCSSCCGGG---------CCS--CCCCCCCTTTCCSSCCGGGCTTT
T ss_pred CcccEeCCccchhhh---------CCC--CCCCCcccccCCcCCEeccCcCC
Confidence 579999888876532 110 0124689999988887 68764
No 19
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=42.26 E-value=17 Score=25.92 Aligned_cols=47 Identities=23% Similarity=0.406 Sum_probs=25.9
Q ss_pred CccccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee--eCCCCC
Q 021514 240 SGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV--MCPSCL 293 (311)
Q Consensus 240 tG~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV--~CptC~ 293 (311)
.....|..|...|.+...-.... ........|..|+..|.+ .|+.=.
T Consensus 2 r~~~~C~~Cg~~GH~a~~C~~~~-------~~~~~~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 2 RARGLCYTCGSPGHYQAQCPKKR-------KSGNSRERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp CCTTBCSSSCCBTCCGGGCTTTT-------SSSCCCSBCTTTCCBSSCGGGCCCCC
T ss_pred CCCCcccccCCCCeehhhCcCCc-------CCCCCCCeeCCCCCCCCCcCCCcCCC
Confidence 34456777777777654211100 000124678888888876 676543
No 20
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=41.97 E-value=15 Score=25.43 Aligned_cols=16 Identities=25% Similarity=0.688 Sum_probs=10.4
Q ss_pred eeeCCCCCcCcee--eCC
Q 021514 275 TQRCPNCSGAGKV--MCP 290 (311)
Q Consensus 275 ~~~CptC~G~GkV--~Cp 290 (311)
...|..|+..|.+ .|+
T Consensus 33 ~~~C~~Cg~~GH~~~~C~ 50 (55)
T 1a1t_A 33 KKGCWKCGKEGHQMKDCT 50 (55)
T ss_dssp CCBCTTTCCBSSCGGGCS
T ss_pred CCEeCCCCCcCCccCCCc
Confidence 3567777777755 455
No 21
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=40.88 E-value=3.5 Score=40.31 Aligned_cols=60 Identities=18% Similarity=0.434 Sum_probs=34.3
Q ss_pred cccccccCcc----------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCce---eeCCCCCCce
Q 021514 233 RCKYCHGSGY----------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGK---VMCPSCLCTG 296 (311)
Q Consensus 233 ~C~~C~GtG~----------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~Gk---V~CptC~GtG 296 (311)
.|..|||.+. ..|..||+............ . ..........|..|+-.-. ..|..|+...
T Consensus 14 ~C~~CH~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~---~-~h~~~~~~~~C~~CH~~h~~~~~~c~~ch~~~ 86 (566)
T 1qo8_A 14 SCQSCHAKPIKVTDSETHENAQCKSCHGEYAELANDKLQF---D-PHNSHLGDINCTSCHKGHEEPKFYCNECHSFD 86 (566)
T ss_dssp CGGGTSCSSCCCCTTCHHHHHHHHHHHCCHHHHCCSSSSS---C-TTSSTTCSCCGGGTSCSSSCCCCGGGGTCCCC
T ss_pred ChhhhCCCccccccccCccCCHHhhhCcCHHHHhhccccC---C-cchhcCCCCCchhhCcCCcCcCchhhhhcCCC
Confidence 7999998764 26999998633221100000 0 0001113678999985432 3799998764
No 22
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=40.73 E-value=14 Score=39.49 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=11.6
Q ss_pred eCCCCCCceEEeceeeCCCcCC
Q 021514 288 MCPSCLCTGMMMASEHDPRIDP 309 (311)
Q Consensus 288 ~CptC~GtG~v~~sEhD~riDP 309 (311)
.||+|.|.|.+..-.-|.-|||
T Consensus 275 ~C~~C~G~G~~~~~d~~~~~d~ 296 (916)
T 3pih_A 275 ACPNCHGLGFTFEVDPSLVIDE 296 (916)
T ss_dssp BCTTTTTSSEEEEECSCCC---
T ss_pred cCCeeecccceEecCHHHccCC
Confidence 5777777777764444433343
No 23
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=34.99 E-value=24 Score=28.10 Aligned_cols=16 Identities=31% Similarity=0.798 Sum_probs=10.3
Q ss_pred eeCCCCCcCcee--eCCC
Q 021514 276 QRCPNCSGAGKV--MCPS 291 (311)
Q Consensus 276 ~~CptC~G~GkV--~Cpt 291 (311)
..|..|+..|.+ .|+.
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~ 82 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPS 82 (124)
T ss_dssp CSSSSSCSSCCCTTTCCC
T ss_pred ccCCCCCcCCcchhhCCC
Confidence 567777777765 4654
No 24
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=32.96 E-value=5 Score=39.20 Aligned_cols=65 Identities=20% Similarity=0.465 Sum_probs=35.7
Q ss_pred cccccccCcc-----------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcC---ceeeCCCCCCceEE
Q 021514 233 RCKYCHGSGY-----------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGA---GKVMCPSCLCTGMM 298 (311)
Q Consensus 233 ~C~~C~GtG~-----------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~---GkV~CptC~GtG~v 298 (311)
.|..||+... ..|..||.......... ......-...+......|..|+.. ....|..|+-..+.
T Consensus 13 ~C~~CH~~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~-~~~~~~~h~~H~~~~~~C~~CH~~h~~~~~~C~~CH~~~~~ 91 (571)
T 1y0p_A 13 ECDSCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETT-KHEHYNAHASHFPGEVACTSCHSAHEKSMVYCDSCHSFDFN 91 (571)
T ss_dssp CGGGTSCTTCCCCCTTCHHHHHHHHHHHCCHHHHHTTS-CCSSCCTTSCSCCSCCCGGGTCCSSSCBCCGGGGTCCCCCC
T ss_pred ChhhcCCCcccccccccccccchhhhhCcChhhccccc-ccccCCccccccCCCCCccccCccccCCCccccccChhhcc
Confidence 8999998642 36999998643221110 000000001112235789999864 23479999976444
No 25
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=29.92 E-value=15 Score=23.01 Aligned_cols=18 Identities=22% Similarity=0.301 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhccccc
Q 021514 153 LTSLSFISGIILFGGLIA 170 (311)
Q Consensus 153 ~~~~~~~~~~~~fggl~a 170 (311)
-.|++.++-.|.||||+.
T Consensus 8 FlyFa~l~paIaFGgLl~ 25 (26)
T 1btq_A 8 FIYFAALSPAITFGXXXX 25 (26)
T ss_pred HHHHHHHcchhccccccC
Confidence 346677778899999863
No 26
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=28.73 E-value=24 Score=21.86 Aligned_cols=14 Identities=36% Similarity=0.769 Sum_probs=8.7
Q ss_pred HhhhhhhHH--HHHHH
Q 021514 91 KHRRNRIFF--LMEEL 104 (311)
Q Consensus 91 ~~r~~kif~--l~eev 104 (311)
...|.+||| |||||
T Consensus 5 Q~~rRr~wL~~ll~~v 20 (24)
T 3h3g_B 5 QDLRRRFFLHHLIAEI 20 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 335556666 67776
No 27
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=27.88 E-value=30 Score=26.68 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=24.5
Q ss_pred chhHHHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 021514 72 PETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQ 110 (311)
Q Consensus 72 ~~~~~d~~~m~~~ei~~ni~~r~~kif~l~eevrrlr~q 110 (311)
=.||+||...+..|+.+. --|=+++|+.+|-.
T Consensus 25 I~Tv~Dfl~~d~~eL~~~-------~~ls~~~v~~l~r~ 56 (83)
T 2kz3_A 25 IKTVVDLVSADLEEVAQK-------CGLSYKALVALRRV 56 (83)
T ss_dssp CCCHHHHTTSCHHHHHHH-------HTCCHHHHHHHHHH
T ss_pred CCCHHHHHhCCHHHHHHH-------hCCCHHHHHHHHHH
Confidence 359999999999999873 34557888877643
No 28
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=27.01 E-value=41 Score=24.79 Aligned_cols=34 Identities=26% Similarity=0.611 Sum_probs=23.0
Q ss_pred eeeCCCCCcCc-eeeCCCCCCceEEeceeeCCCcCCCC
Q 021514 275 TQRCPNCSGAG-KVMCPSCLCTGMMMASEHDPRIDPFD 311 (311)
Q Consensus 275 ~~~CptC~G~G-kV~CptC~GtG~v~~sEhD~riDPf~ 311 (311)
...|+.|+-.. +..||.|.+. ..+-|=+|+.|=|
T Consensus 6 mr~C~~CgvYTLk~~CP~CG~~---T~~~hParfSp~D 40 (60)
T 2apo_B 6 MKKCPKCGLYTLKEICPKCGEK---TVIPKPPKFSLED 40 (60)
T ss_dssp CEECTTTCCEESSSBCSSSCSB---CBCCCCCCCCTTC
T ss_pred ceeCCCCCCEeccccCcCCCCc---CCCCCCCCCCCCc
Confidence 56888885433 3379999654 5667888887743
No 29
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=26.83 E-value=40 Score=24.88 Aligned_cols=34 Identities=35% Similarity=0.780 Sum_probs=22.6
Q ss_pred eeeCCCCCcCc-eeeCCCCCCceEEeceeeCCCcCCCC
Q 021514 275 TQRCPNCSGAG-KVMCPSCLCTGMMMASEHDPRIDPFD 311 (311)
Q Consensus 275 ~~~CptC~G~G-kV~CptC~GtG~v~~sEhD~riDPf~ 311 (311)
...|+.|+-.. +..||.|.+. ..+.|=+|+.|=|
T Consensus 5 mr~C~~Cg~YTLk~~CP~CG~~---t~~ahParfSP~D 39 (60)
T 2aus_D 5 IRKCPKCGRYTLKETCPVCGEK---TKVAHPPRFSPED 39 (60)
T ss_dssp CEECTTTCCEESSSBCTTTCSB---CEESSCCCCCSCC
T ss_pred ceECCCCCCEEccccCcCCCCc---cCCCCCCCCCCCC
Confidence 46899995333 2379999764 4567778887743
No 30
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.57 E-value=46 Score=23.26 Aligned_cols=8 Identities=25% Similarity=0.796 Sum_probs=4.4
Q ss_pred eeeCCCCC
Q 021514 275 TQRCPNCS 282 (311)
Q Consensus 275 ~~~CptC~ 282 (311)
+..|+.|+
T Consensus 37 R~~C~kCG 44 (50)
T 3j20_Y 37 RWACGKCG 44 (50)
T ss_dssp EEECSSSC
T ss_pred eEECCCCC
Confidence 45566554
No 31
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=26.31 E-value=33 Score=37.25 Aligned_cols=16 Identities=25% Similarity=0.659 Sum_probs=10.9
Q ss_pred eCCCCCCceEEeceee
Q 021514 288 MCPSCLCTGMMMASEH 303 (311)
Q Consensus 288 ~CptC~GtG~v~~sEh 303 (311)
.||+|.|.|.+..-.-
T Consensus 302 aCp~C~G~G~~~~~d~ 317 (993)
T 2ygr_A 302 ACPDCSGLGIRKEVDP 317 (993)
T ss_dssp BCTTTTTSCEEEEECT
T ss_pred CCCCCcCccceeecCH
Confidence 6888888887764443
No 32
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=26.30 E-value=27 Score=37.84 Aligned_cols=22 Identities=32% Similarity=0.813 Sum_probs=17.5
Q ss_pred eeCCCCCcCcee------------eCCCCCCceE
Q 021514 276 QRCPNCSGAGKV------------MCPSCLCTGM 297 (311)
Q Consensus 276 ~~CptC~G~GkV------------~CptC~GtG~ 297 (311)
-+|+.|.|.|.+ .|..|+|..+
T Consensus 754 grC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~ 787 (972)
T 2r6f_A 754 GRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRY 787 (972)
T ss_dssp TBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCB
T ss_pred ccccccccccceeeehhccccccccccccccccc
Confidence 479999998875 6999988754
No 33
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=25.11 E-value=46 Score=35.27 Aligned_cols=21 Identities=5% Similarity=0.278 Sum_probs=15.1
Q ss_pred hhHHHHHhhcHHHHHHHHHhh
Q 021514 73 ETLQDFVQMQLKEIEDNIKHR 93 (311)
Q Consensus 73 ~~~~d~~~m~~~ei~~ni~~r 93 (311)
.++.|+..|.+.|+.+=+..-
T Consensus 307 ~~I~~~~~~~v~e~~~~~~~~ 327 (842)
T 2vf7_A 307 LDITELSRLPLARVSELLRPY 327 (842)
T ss_dssp BCHHHHHHSBHHHHHHHHHHH
T ss_pred ccHHHHhhcCHHHHHHHHHhh
Confidence 467888888888877655543
No 34
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=24.76 E-value=47 Score=36.02 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=24.6
Q ss_pred cCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCce
Q 021514 244 ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGK 286 (311)
Q Consensus 244 ~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~Gk 286 (311)
+|+.|.|.|.+....... ......|+.|.|...
T Consensus 755 rC~~C~g~G~i~~em~fl----------~~v~~~ce~c~G~r~ 787 (972)
T 2r6f_A 755 RCEACHGDGIIKIEMHFL----------PDVYVPCEVCHGKRY 787 (972)
T ss_dssp BCTTTTTCSEEEECCSSS----------CCEEEECTTTTTCCB
T ss_pred cccccccccceeeehhcc----------ccccccccccccccc
Confidence 699999999997653322 235789999999753
No 35
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=24.42 E-value=32 Score=22.00 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=8.4
Q ss_pred eeCCCCCcCcee
Q 021514 276 QRCPNCSGAGKV 287 (311)
Q Consensus 276 ~~CptC~G~GkV 287 (311)
..|..|+..|.+
T Consensus 20 ~~C~~Cg~~GH~ 31 (37)
T 2bl6_A 20 KVCFKCKQPGHF 31 (37)
T ss_dssp TTCSSCCCTTGG
T ss_pred CeEccCCCcCCc
Confidence 567777777754
No 36
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=24.40 E-value=51 Score=23.51 Aligned_cols=23 Identities=39% Similarity=1.125 Sum_probs=14.4
Q ss_pred eeeCCCCCc--------CceeeCCCCCCceEEec
Q 021514 275 TQRCPNCSG--------AGKVMCPSCLCTGMMMA 300 (311)
Q Consensus 275 ~~~CptC~G--------~GkV~CptC~GtG~v~~ 300 (311)
...||.|++ +|.+.|..| |.+..
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~C---GlVl~ 41 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPEC---GLVVG 41 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTT---CCEEC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCC---CCEEe
Confidence 346777765 355678888 55553
No 37
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=24.31 E-value=54 Score=26.74 Aligned_cols=15 Identities=13% Similarity=0.492 Sum_probs=13.0
Q ss_pred CCCCCCCCHHHHHHH
Q 021514 137 IPFLPYVTPKTLKQL 151 (311)
Q Consensus 137 ~p~~~~~~~~~~~~~ 151 (311)
+.|||+||++.+.+=
T Consensus 16 fSyLP~lt~eqI~kQ 30 (110)
T 1svd_M 16 FSYLPPMNAERIRAQ 30 (110)
T ss_dssp TTTSCCCCHHHHHHH
T ss_pred cccCCCCCHHHHHHH
Confidence 899999999998554
No 38
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Probab=24.02 E-value=51 Score=33.29 Aligned_cols=18 Identities=33% Similarity=0.959 Sum_probs=14.2
Q ss_pred ccc--ccccCccccCCCCCC
Q 021514 233 RCK--YCHGSGYLACARCSS 250 (311)
Q Consensus 233 ~C~--~C~GtG~v~C~~C~G 250 (311)
.|. .|.|.|...|..|..
T Consensus 483 ~C~~~gC~Gpgp~~C~sC~~ 502 (551)
T 3i2t_A 483 QCNEDGCWGAGTDQCLNCKN 502 (551)
T ss_dssp TBCTTCBSSSSTTCBSSBSS
T ss_pred hhccCCCCCCCCCceeECcc
Confidence 455 788888888888875
No 39
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=23.62 E-value=33 Score=36.39 Aligned_cols=22 Identities=45% Similarity=0.989 Sum_probs=18.1
Q ss_pred eeCCCCCcCcee------------eCCCCCCceE
Q 021514 276 QRCPNCSGAGKV------------MCPSCLCTGM 297 (311)
Q Consensus 276 ~~CptC~G~GkV------------~CptC~GtG~ 297 (311)
.+|+.|.|.|.+ .|+.|+|+.+
T Consensus 639 g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~ 672 (842)
T 2vf7_A 639 GRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRY 672 (842)
T ss_dssp TBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCB
T ss_pred cccccccCCCccchhhhcCCccceecccccCccc
Confidence 369999999966 5999999875
No 40
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=22.36 E-value=34 Score=25.45 Aligned_cols=8 Identities=13% Similarity=0.571 Sum_probs=4.6
Q ss_pred ceeeCCCC
Q 021514 285 GKVMCPSC 292 (311)
Q Consensus 285 GkV~CptC 292 (311)
|...|+.|
T Consensus 25 ~~LiC~~c 32 (68)
T 2hf1_A 25 DELICKGD 32 (68)
T ss_dssp TEEEETTT
T ss_pred CEEEcCCC
Confidence 44566666
No 41
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=21.79 E-value=35 Score=25.38 Aligned_cols=8 Identities=0% Similarity=0.040 Sum_probs=4.7
Q ss_pred ceeeCCCC
Q 021514 285 GKVMCPSC 292 (311)
Q Consensus 285 GkV~CptC 292 (311)
|...|+.|
T Consensus 25 ~~LiC~~c 32 (68)
T 2jr6_A 25 QELWSRQA 32 (68)
T ss_dssp TEEEETTT
T ss_pred CEEEcCCC
Confidence 44566666
No 42
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.67 E-value=53 Score=23.51 Aligned_cols=16 Identities=25% Similarity=0.899 Sum_probs=11.2
Q ss_pred eeeCCCCCcCcee--eCC
Q 021514 275 TQRCPNCSGAGKV--MCP 290 (311)
Q Consensus 275 ~~~CptC~G~GkV--~Cp 290 (311)
...|..|+..|.+ .|+
T Consensus 29 ~~~C~~Cg~~GH~ar~Cp 46 (63)
T 2cqf_A 29 PKKCHFCQSISHMVASCP 46 (63)
T ss_dssp SSCCTTTCCSSSCTTTCT
T ss_pred CCccCCcCCcCCccCcCC
Confidence 4678888888765 454
No 43
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=20.65 E-value=39 Score=25.18 Aligned_cols=8 Identities=0% Similarity=0.202 Sum_probs=4.3
Q ss_pred ceeeCCCC
Q 021514 285 GKVMCPSC 292 (311)
Q Consensus 285 GkV~CptC 292 (311)
|...|+.|
T Consensus 25 ~~LiC~~c 32 (69)
T 2pk7_A 25 TELISKGA 32 (69)
T ss_dssp SEEEETTT
T ss_pred CEEEcCCC
Confidence 44456655
No 44
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=20.36 E-value=41 Score=25.01 Aligned_cols=8 Identities=0% Similarity=-0.151 Sum_probs=4.6
Q ss_pred ceeeCCCC
Q 021514 285 GKVMCPSC 292 (311)
Q Consensus 285 GkV~CptC 292 (311)
|...|+.|
T Consensus 27 g~LvC~~c 34 (67)
T 2jny_A 27 QLLVNERL 34 (67)
T ss_dssp TEEEETTT
T ss_pred CEEEcCCC
Confidence 44566666
Done!