Query 021514
Match_columns 311
No_of_seqs 216 out of 1346
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 05:14:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021514.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021514hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1exka_ g.54.1.1 (A:) Cysteine 99.1 9.9E-12 7.2E-16 94.0 4.3 66 224-300 4-78 (79)
2 d1nlta3 g.54.1.1 (A:139-212) M 99.1 2.5E-11 1.8E-15 90.9 3.5 62 231-299 2-73 (74)
3 d1exka_ g.54.1.1 (A:) Cysteine 97.8 6.4E-06 4.7E-10 61.4 3.3 43 242-300 11-64 (79)
4 d1nlta3 g.54.1.1 (A:139-212) M 97.7 3.9E-06 2.8E-10 62.0 1.4 41 243-300 3-58 (74)
5 d1m1qa_ a.138.1.3 (A:) Flavocy 96.9 3.8E-05 2.8E-09 57.1 -1.5 60 233-299 13-84 (90)
6 d1m1qa_ a.138.1.3 (A:) Flavocy 91.7 0.022 1.6E-06 41.5 0.9 38 231-287 31-83 (90)
7 d2fiya1 e.59.1.1 (A:19-308) Fd 85.7 0.16 1.1E-05 45.6 2.2 37 274-310 203-259 (290)
8 d2exfa1 g.40.1.1 (A:12-53) HIV 68.6 1.2 8.8E-05 28.7 2.0 36 243-290 2-39 (42)
9 d1svdm1 d.73.1.1 (M:3-110) Rib 42.8 8.2 0.00059 29.6 3.2 22 129-150 1-27 (108)
10 d2apob1 g.41.16.1 (B:403-457) 39.5 7.8 0.00057 26.6 2.3 33 275-310 4-37 (55)
11 d1p9ra_ c.37.1.11 (A:) Extrace 38.9 5.4 0.0004 35.7 1.8 8 231-238 295-302 (401)
12 d1guqa1 d.13.1.2 (A:2-177) Gal 38.2 5.6 0.00041 32.2 1.6 33 66-98 106-138 (176)
13 d1qo8a1 a.138.1.3 (A:2-102) Fl 38.1 1.6 0.00012 32.1 -1.7 62 233-298 13-87 (101)
14 d2ey4e1 g.41.16.1 (E:4-55) Rib 34.3 10 0.00075 25.7 2.2 31 276-309 3-34 (52)
15 d1p9ra_ c.37.1.11 (A:) Extrace 33.8 8.2 0.0006 34.4 2.1 8 243-250 296-303 (401)
16 d1dl6a_ g.41.3.1 (A:) Transcri 32.9 16 0.0012 24.7 3.1 20 273-292 9-36 (58)
17 d1pfta_ g.41.3.1 (A:) Transcri 30.0 11 0.00082 24.8 1.8 8 285-292 23-30 (50)
18 d1vqov1 a.2.2.1 (V:1-65) Ribos 25.3 43 0.0031 22.8 4.3 32 75-113 5-36 (65)
19 d1d4ca1 a.138.1.3 (A:1-102) Fl 23.6 3.9 0.00028 29.8 -1.8 64 233-297 14-92 (102)
20 d1tfia_ g.41.3.1 (A:) Transcri 22.3 37 0.0027 22.4 3.3 36 242-282 9-44 (50)
21 d1qypa_ g.41.3.1 (A:) RBP9 sub 22.0 33 0.0024 23.1 3.0 35 243-282 16-50 (57)
No 1
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
Probab=99.15 E-value=9.9e-12 Score=93.98 Aligned_cols=66 Identities=29% Similarity=0.661 Sum_probs=54.4
Q ss_pred ceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCC
Q 021514 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLC 294 (311)
Q Consensus 224 nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~G 294 (311)
..+++++...|+.|+|+|. ..|+.|+|+|++.... +.++..++|+.|+|+|++ +|+.|.|
T Consensus 4 k~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~-----------g~~~~~~~C~~C~G~G~~i~~~C~~C~G 72 (79)
T d1exka_ 4 KEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ-----------GFFAVQQTCPHCQGRGTLIKDPCNKCHG 72 (79)
T ss_dssp TSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE-----------TTEEEEEECTTTTTSSEECSSBCGGGTT
T ss_pred EEEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEEec-----------ccceeeEECcccCcceeECCCCCCCCCC
Confidence 3466778899999999985 5799999999886532 223467899999999998 8999999
Q ss_pred ceEEec
Q 021514 295 TGMMMA 300 (311)
Q Consensus 295 tG~v~~ 300 (311)
+|++..
T Consensus 73 ~G~v~k 78 (79)
T d1exka_ 73 HGRVER 78 (79)
T ss_dssp SSEEEC
T ss_pred ceEeec
Confidence 999865
No 2
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.07 E-value=2.5e-11 Score=90.93 Aligned_cols=62 Identities=26% Similarity=0.636 Sum_probs=51.3
Q ss_pred cccccccccCcc-----ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----eCCCCCCceEEe
Q 021514 231 KKRCKYCHGSGY-----LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----MCPSCLCTGMMM 299 (311)
Q Consensus 231 ~k~C~~C~GtG~-----v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----~CptC~GtG~v~ 299 (311)
.+.|+.|+|+|. .+|+.|+|+|++....++. ++..+...+|+.|.|+|++ +|+.|+|+|++.
T Consensus 2 ~v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g-------~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~ 73 (74)
T d1nlta3 2 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMG-------PMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVEN 73 (74)
T ss_dssp EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESS-------SEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred ccCCcCCcccccCCCCCCCCCCCcceeeeeEEEEec-------CcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeC
Confidence 568999999995 5799999999998766553 2344567899999999986 699999999774
No 3
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
Probab=97.77 E-value=6.4e-06 Score=61.35 Aligned_cols=43 Identities=35% Similarity=0.868 Sum_probs=35.3
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEec
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMMA 300 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~~ 300 (311)
+..|+.|+|+|.... ....+|+.|+|+|++ +|+.|.|+|++..
T Consensus 11 ~~~C~~C~G~G~~~g----------------~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~ 64 (79)
T d1exka_ 11 LEECDVCHGSGAKPG----------------TQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK 64 (79)
T ss_dssp EEECGGGTTTSBCSS----------------SCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS
T ss_pred eccCCCCcCcccCCC----------------ccceeCCCccceeEEEEecccceeeEECcccCcceeECC
Confidence 468999999996531 135789999999976 6999999999863
No 4
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.72 E-value=3.9e-06 Score=62.04 Aligned_cols=41 Identities=27% Similarity=0.723 Sum_probs=33.2
Q ss_pred ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---------------eCCCCCCceEEec
Q 021514 243 LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---------------MCPSCLCTGMMMA 300 (311)
Q Consensus 243 v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---------------~CptC~GtG~v~~ 300 (311)
+.|+.|+|+|.... ...+|+.|+|+|++ +|+.|.|+|.+..
T Consensus 3 v~C~~C~G~G~~~~-----------------~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~ 58 (74)
T d1nlta3 3 ILCKECEGRGGKKG-----------------AVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID 58 (74)
T ss_dssp EECTTTTTCSBSTT-----------------TCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC
T ss_pred cCCcCCcccccCCC-----------------CCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeC
Confidence 68999999996531 13579999999964 6999999998754
No 5
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}
Probab=96.90 E-value=3.8e-05 Score=57.07 Aligned_cols=60 Identities=18% Similarity=0.319 Sum_probs=44.6
Q ss_pred cccccccCcc---------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEe
Q 021514 233 RCKYCHGSGY---------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMM 299 (311)
Q Consensus 233 ~C~~C~GtG~---------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~ 299 (311)
.|..|||.|. ..|..|+|+|......... ......-..|+.|.|.|+. .|..|++.|+..
T Consensus 13 ~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~-------h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~~ 84 (90)
T d1m1qa_ 13 GCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKP-------HDGNLVCADCHAVHDMNVGQKPTCESCHDDGRTS 84 (90)
T ss_dssp CGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGG-------GTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCCH
T ss_pred CCCCcCCCCccccCCCCCCCcCcccCCCceeEeecccc-------ccCccccccCccccCCCCcCCCccccccCCCccc
Confidence 6999999874 3699999999765432221 1233456889999998875 899999999764
No 6
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}
Probab=91.70 E-value=0.022 Score=41.52 Aligned_cols=38 Identities=24% Similarity=0.598 Sum_probs=26.6
Q ss_pred cccccccccCcc---------------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514 231 KKRCKYCHGSGY---------------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287 (311)
Q Consensus 231 ~k~C~~C~GtG~---------------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV 287 (311)
...|..|||+|. ..|..|+|.|.. ....|..|.|.|+.
T Consensus 31 ~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~-------------------~~~~C~~CH~~gr~ 83 (90)
T d1m1qa_ 31 FAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVG-------------------QKPTCESCHDDGRT 83 (90)
T ss_dssp HHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTT-------------------CCCCSTTTCSSCCC
T ss_pred CCcCcccCCCceeEeeccccccCccccccCccccCCCCc-------------------CCCccccccCCCcc
Confidence 357999999874 356666665532 24579999998874
No 7
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=85.65 E-value=0.16 Score=45.56 Aligned_cols=37 Identities=24% Similarity=0.511 Sum_probs=29.2
Q ss_pred ceeeCCCCCcCce-------------------e-eCCCCCCceEEeceeeCCCcCCC
Q 021514 274 TTQRCPNCSGAGK-------------------V-MCPSCLCTGMMMASEHDPRIDPF 310 (311)
Q Consensus 274 ~~~~CptC~G~Gk-------------------V-~CptC~GtG~v~~sEhD~riDPf 310 (311)
.+..|+.|+-+.. + .|.+|++-=++...+.|+.+||+
T Consensus 203 ~R~~C~~Cg~~~~~~~~~~~~~~~~~~~~~~r~e~C~~C~~Y~K~~~~~~~~~~~p~ 259 (290)
T d2fiya1 203 VRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYLEFDRHADAL 259 (290)
T ss_dssp CTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEEEEETTTCTTCCHH
T ss_pred ccccCCCCCCCCCcceEEEecCCCcccccceEEEEcCCcCCeEEEeecccCCccCcc
Confidence 4678899875431 1 59999998888888999999985
No 8
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}
Probab=68.60 E-value=1.2 Score=28.71 Aligned_cols=36 Identities=25% Similarity=0.624 Sum_probs=21.5
Q ss_pred ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee--eCC
Q 021514 243 LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV--MCP 290 (311)
Q Consensus 243 v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV--~Cp 290 (311)
+.|..|...|-.... |.......|..|+..|.+ .||
T Consensus 2 i~C~~Cg~~GH~~~~------------Cp~~~~~~C~~Cg~~GH~~~~Cp 39 (42)
T d2exfa1 2 VKCFNCGKEGHTARN------------CRAPRKKGCWKCGKEGHQMKDCT 39 (42)
T ss_dssp CCCTTTCCSSSCTTT------------CSSCCCSSCSSSCCSSSCTTTCC
T ss_pred CccccCCCcCcCccc------------CcCCCcCccccCCCCCeecccCC
Confidence 457777777765421 222234568888888865 455
No 9
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}
Probab=42.82 E-value=8.2 Score=29.64 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=16.3
Q ss_pred CCCCCCCC-----CCCCCCCCHHHHHH
Q 021514 129 EMPEIPSS-----IPFLPYVTPKTLKQ 150 (311)
Q Consensus 129 ~~~~~~s~-----~p~~~~~~~~~~~~ 150 (311)
||.+|++. +.|||+||++.+.+
T Consensus 1 ~~~~~~~~~~~eTfSyLP~Ltde~I~~ 27 (108)
T d1svdm1 1 EMQDYKQSLKYETFSYLPPMNAERIRA 27 (108)
T ss_dssp CCCCCCCCCCCSTTTTSCCCCHHHHHH
T ss_pred CcccccccccccccccCCCCCHHHHHH
Confidence 35556654 68999999998854
No 10
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=39.48 E-value=7.8 Score=26.61 Aligned_cols=33 Identities=21% Similarity=0.524 Sum_probs=22.4
Q ss_pred eeeCCCCCcCce-eeCCCCCCceEEeceeeCCCcCCC
Q 021514 275 TQRCPNCSGAGK-VMCPSCLCTGMMMASEHDPRIDPF 310 (311)
Q Consensus 275 ~~~CptC~G~Gk-V~CptC~GtG~v~~sEhD~riDPf 310 (311)
-..|+.|+-.+- ..||.|.|.- ..-|=+|+.|=
T Consensus 4 lrkC~~C~~YTL~~~CP~CG~~t---~~a~P~rfSPe 37 (55)
T d2apob1 4 MKKCPKCGLYTLKEICPKCGEKT---VIPKPPKFSLE 37 (55)
T ss_dssp CEECTTTCCEESSSBCSSSCSBC---BCCCCCCCCTT
T ss_pred eeeCCcccceeccccCcCCCCcc---CccCCCCCCCC
Confidence 468999987654 3899998754 44566666553
No 11
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}
Probab=38.88 E-value=5.4 Score=35.69 Aligned_cols=8 Identities=25% Similarity=0.866 Sum_probs=6.1
Q ss_pred cccccccc
Q 021514 231 KKRCKYCH 238 (311)
Q Consensus 231 ~k~C~~C~ 238 (311)
++.|+.|+
T Consensus 295 ~~lCp~Ck 302 (401)
T d1p9ra_ 295 RTLCPDCK 302 (401)
T ss_dssp EEECTTTC
T ss_pred hhhCCCcC
Confidence 57888885
No 12
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Probab=38.16 E-value=5.6 Score=32.15 Aligned_cols=33 Identities=9% Similarity=0.193 Sum_probs=28.2
Q ss_pred eEEEeCchhHHHHHhhcHHHHHHHHHhhhhhhH
Q 021514 66 FSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIF 98 (311)
Q Consensus 66 ~~~~~~~~~~~d~~~m~~~ei~~ni~~r~~kif 98 (311)
..|||+|+--.+|++|..++|++=|+.=|+++.
T Consensus 106 eVIi~sp~H~~~l~~~~~~~i~~vl~a~~~R~~ 138 (176)
T d1guqa1 106 RVICFSPDHSKTLPELSVAALTEIVKTWQEQTA 138 (176)
T ss_dssp EEEESCSCTTCCGGGSCHHHHHHHHHHHHHHHH
T ss_pred eEEEECcccccChhhCCHHHHHHHHHHHHHHHH
Confidence 369999999999999999999998877666543
No 13
>d1qo8a1 a.138.1.3 (A:2-102) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella frigidimarina [TaxId: 56812]}
Probab=38.07 E-value=1.6 Score=32.08 Aligned_cols=62 Identities=18% Similarity=0.415 Sum_probs=37.2
Q ss_pred cccccccCcc----------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEE
Q 021514 233 RCKYCHGSGY----------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMM 298 (311)
Q Consensus 233 ~C~~C~GtG~----------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v 298 (311)
.|..||+.+. ..|..|+|............. ..........|..|.+.-+. .|..|+-.++.
T Consensus 13 ~C~~CH~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~----~h~~~~~~~~C~~CH~~H~~~~~~C~~CH~~~~~ 87 (101)
T d1qo8a1 13 SCQSCHAKPIKVTDSETHENAQCKSCHGEYAELANDKLQFD----PHNSHLGDINCTSCHKGHEEPKFYCNECHSFDIK 87 (101)
T ss_dssp CGGGTSCSSCCCCTTCHHHHHHHHHHHCCHHHHCCSSSSSC----TTSSTTCSCCGGGTSCSSSCCCCGGGGTCCCCCC
T ss_pred ChhhhcCCcccCccccccccchhhhccCchhhhccccccCC----cccccCCCCchhhhccCCCCCCccccccccCCCC
Confidence 7999997543 479999988765543221100 00112234679999986544 68888865443
No 14
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=34.27 E-value=10 Score=25.72 Aligned_cols=31 Identities=32% Similarity=0.832 Sum_probs=20.1
Q ss_pred eeCCCCCcCce-eeCCCCCCceEEeceeeCCCcCC
Q 021514 276 QRCPNCSGAGK-VMCPSCLCTGMMMASEHDPRIDP 309 (311)
Q Consensus 276 ~~CptC~G~Gk-V~CptC~GtG~v~~sEhD~riDP 309 (311)
+.|+.|+-..- ..||.|.|.-.. -|=+|+.|
T Consensus 3 rkC~~C~~YTL~~~CP~CG~~t~~---a~ParfSP 34 (52)
T d2ey4e1 3 RKCPKCGRYTLKEVCPVCGEKTKV---AHPPRFSP 34 (52)
T ss_dssp EECTTTCCEESSSBCTTTCCBCEE---SSCCCCCT
T ss_pred ccCCcccceeccccCcCCCCcccc---cCCCCCCC
Confidence 57888886553 378888776544 45555555
No 15
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}
Probab=33.81 E-value=8.2 Score=34.45 Aligned_cols=8 Identities=25% Similarity=0.866 Sum_probs=5.8
Q ss_pred ccCCCCCC
Q 021514 243 LACARCSS 250 (311)
Q Consensus 243 v~C~~C~G 250 (311)
..|+.|.-
T Consensus 296 ~lCp~Ck~ 303 (401)
T d1p9ra_ 296 TLCPDCKE 303 (401)
T ss_dssp EECTTTCE
T ss_pred hhCCCcCc
Confidence 57888864
No 16
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.87 E-value=16 Score=24.74 Aligned_cols=20 Identities=40% Similarity=1.039 Sum_probs=14.0
Q ss_pred CceeeCCCCCcC--------ceeeCCCC
Q 021514 273 PTTQRCPNCSGA--------GKVMCPSC 292 (311)
Q Consensus 273 q~~~~CptC~G~--------GkV~CptC 292 (311)
..+..||.|++. |...|..|
T Consensus 9 ~~~~~Cp~Cgs~~ii~D~~~Ge~vC~~C 36 (58)
T d1dl6a_ 9 LPRVTCPNHPDAILVEDYRAGDMICPEC 36 (58)
T ss_dssp CSCCSBTTBSSSCCEECSSSCCEECTTT
T ss_pred ccccCCCCCCCCCEEEECCCCcEecccC
Confidence 356778888765 45578888
No 17
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=30.01 E-value=11 Score=24.79 Aligned_cols=8 Identities=38% Similarity=1.493 Sum_probs=4.9
Q ss_pred ceeeCCCC
Q 021514 285 GKVMCPSC 292 (311)
Q Consensus 285 GkV~CptC 292 (311)
|.+.|..|
T Consensus 23 Ge~vC~~C 30 (50)
T d1pfta_ 23 GEIVCAKC 30 (50)
T ss_dssp TEEEESSS
T ss_pred CeEecccC
Confidence 45566666
No 18
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=25.29 E-value=43 Score=22.77 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=24.6
Q ss_pred HHHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhh
Q 021514 75 LQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRI 113 (311)
Q Consensus 75 ~~d~~~m~~~ei~~ni~~r~~kif~l~eevrrlr~q~~~ 113 (311)
++|+-+|..+|+++-+.. |-+|.-.||++|..
T Consensus 5 ~~elr~ls~~eL~~~l~e-------lk~El~~LR~~q~~ 36 (65)
T d1vqov1 5 VQEIRDMTPAEREAELDD-------LKTELLNARAVQAA 36 (65)
T ss_dssp HHHHHTSCHHHHHHHHHH-------HHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 578999999999985544 55688888986654
No 19
>d1d4ca1 a.138.1.3 (A:1-102) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella putrefaciens [TaxId: 24]}
Probab=23.58 E-value=3.9 Score=29.75 Aligned_cols=64 Identities=20% Similarity=0.440 Sum_probs=35.1
Q ss_pred cccccccCcc------------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCce---eeCCCCCCceE
Q 021514 233 RCKYCHGSGY------------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGK---VMCPSCLCTGM 297 (311)
Q Consensus 233 ~C~~C~GtG~------------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~Gk---V~CptC~GtG~ 297 (311)
.|..||+.+. ..|..|++.+....... ......-..........|.+|.+.-+ ..|..|+-..+
T Consensus 14 ~C~~CH~~~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~-~~~~~~~h~~~~~~~~~C~~CH~~H~~~~~~C~~CH~~~~ 92 (102)
T d1d4ca1 14 GCDSCHVSDKGGVTNDNLTHENGQCVSCHGDLKELAAAA-PKDKVSPHKSHLIGEIACTSCHKGHEKSVAYCDACHSFGF 92 (102)
T ss_dssp CSTTTSSSTTCCCSSTTCHHHHHHHHHHHCCHHHHHHTS-CSSSCCTTSCSCCSCCCGGGTSCSSSCBCCGGGGTCCCCC
T ss_pred chhhhccCccccCcccccccccchhhHhcccHhhhhhcc-ccccCCccccCCCCCCcchhccCcCcCCcccccccccCCC
Confidence 6999998754 36999998764322110 00000000011234568999987532 26888876543
No 20
>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.33 E-value=37 Score=22.35 Aligned_cols=36 Identities=14% Similarity=0.472 Sum_probs=22.4
Q ss_pred cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCC
Q 021514 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCS 282 (311)
Q Consensus 242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~ 282 (311)
..+|+.|+.........++...+. .+..-..|..|+
T Consensus 9 ~~~C~kC~~~~~~~~~~QtRSADE-----p~T~F~~C~~Cg 44 (50)
T d1tfia_ 9 LFTCGKCKKKNCTYTQVQTRSADE-----PMTTFVVCNECG 44 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSS-----CCEEEEEESSSC
T ss_pred CEECCCCCCCccEEEEEEccCCCC-----CceEEEEccccC
Confidence 357888888777666555544332 233456788776
No 21
>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}
Probab=21.98 E-value=33 Score=23.09 Aligned_cols=35 Identities=11% Similarity=0.417 Sum_probs=20.0
Q ss_pred ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCC
Q 021514 243 LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCS 282 (311)
Q Consensus 243 v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~ 282 (311)
..|+.|+.........++...+. .+...-.|..|+
T Consensus 16 ~~CpkC~~~~a~~~~~QtRsaDE-----~~T~fy~C~~Cg 50 (57)
T d1qypa_ 16 ITCPKCGNDTAYWWEMQTRAGDE-----PSTIFYKCTKCG 50 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSC-----SSEEEEEESSSC
T ss_pred CCCCCCCCCceEEEEeecccccC-----CCeEEEEeCCCC
Confidence 46778877777766555533221 123445677775
Done!