Query 021515
Match_columns 311
No_of_seqs 222 out of 528
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 05:15:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 99.5 3.6E-15 1.2E-19 116.3 1.3 32 279-310 8-43 (76)
2 1wj2_A Probable WRKY transcrip 99.5 6.9E-15 2.4E-19 115.3 1.3 37 274-310 6-46 (78)
3 1xnl_A ASLV/FP, membrane prote 10.5 1.5E+02 0.0052 18.9 2.0 13 29-41 16-28 (29)
4 3rgh_A Filamin-A; cell adhesio 8.5 81 0.0028 24.0 0.2 16 290-305 79-94 (100)
5 3ost_A Serine/threonine-protei 8.3 60 0.002 27.4 -0.7 14 290-303 48-61 (128)
6 3cnk_A Filamin-A; FLNA24, X-RA 8.2 85 0.0029 23.1 0.2 15 290-304 70-84 (89)
7 2b7v_A Double-stranded RNA-spe 7.9 2.6E+02 0.0089 19.8 2.7 15 25-39 54-68 (71)
8 1v05_A Filamin C; actin-bindin 7.5 96 0.0033 23.1 0.2 15 290-304 77-91 (96)
9 2d7m_A Filamin-C; beta-sandwic 7.4 1.1E+02 0.0039 23.6 0.6 16 290-305 84-99 (115)
10 2dj4_A Filamin-B; beta-sandwic 6.8 1.3E+02 0.0044 23.1 0.6 16 290-305 83-98 (108)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.49 E-value=3.6e-15 Score=116.32 Aligned_cols=32 Identities=59% Similarity=1.122 Sum_probs=29.2
Q ss_pred CCCCCCCCCCchhhhcCCccCCCCCCCC----CCCC
Q 021515 279 SKMADIPPDDYSWRKYGQKPIKGSPHPR----CASV 310 (311)
Q Consensus 279 ~~~~~~~~Dgy~WRKYGQK~Ikgs~~PR----Cs~~ 310 (311)
..+.++++|||+|||||||.|||++||| ||+.
T Consensus 8 ~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~ 43 (76)
T 2ayd_A 8 QTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP 43 (76)
T ss_dssp ECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECST
T ss_pred cCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCC
Confidence 3578899999999999999999999999 9874
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.47 E-value=6.9e-15 Score=115.28 Aligned_cols=37 Identities=43% Similarity=0.879 Sum_probs=30.8
Q ss_pred EeccCCCCCCCCCCCchhhhcCCccCCCCCCCC----CCCC
Q 021515 274 VPAISSKMADIPPDDYSWRKYGQKPIKGSPHPR----CASV 310 (311)
Q Consensus 274 vp~~s~~~~~~~~Dgy~WRKYGQK~Ikgs~~PR----Cs~~ 310 (311)
|...+..+.++++|||.|||||||.|||++||| ||+.
T Consensus 6 ~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~ 46 (78)
T 1wj2_A 6 SGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP 46 (78)
T ss_dssp --CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECS
T ss_pred EEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcC
Confidence 334455678899999999999999999999999 8864
No 3
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=10.51 E-value=1.5e+02 Score=18.94 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHH
Q 021515 29 AASEGMQSIGEFI 41 (311)
Q Consensus 29 AAsAGLeS~e~Li 41 (311)
||+++|+-+|+|.
T Consensus 16 aAAqAL~eIERLa 28 (29)
T 1xnl_A 16 AAAQALREIERLA 28 (29)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 5777999999984
No 4
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=8.49 E-value=81 Score=24.04 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=13.9
Q ss_pred hhhhcCCccCCCCCCC
Q 021515 290 SWRKYGQKPIKGSPHP 305 (311)
Q Consensus 290 ~WRKYGQK~Ikgs~~P 305 (311)
-+=|||-+.|.||||-
T Consensus 79 i~V~~~g~~V~gSPf~ 94 (100)
T 3rgh_A 79 VTIKYGGQPVPNFPSK 94 (100)
T ss_dssp EEEEETTEECTTCSEE
T ss_pred EEEEECCEECCCCCEE
Confidence 6779999999999983
No 5
>3ost_A Serine/threonine-protein kinase KCC4; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.69A {Saccharomyces cerevisiae} PDB: 3osm_A
Probab=8.27 E-value=60 Score=27.36 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=11.4
Q ss_pred hhhhcCCccCCCCC
Q 021515 290 SWRKYGQKPIKGSP 303 (311)
Q Consensus 290 ~WRKYGQK~Ikgs~ 303 (311)
.|.+||=|+|.-.+
T Consensus 48 ~Wk~yGlkdv~~D~ 61 (128)
T 3ost_A 48 GWKQYGLKNLVFNI 61 (128)
T ss_dssp TCGGGTEEEEEEET
T ss_pred HHHHhCccceEecC
Confidence 79999999887544
No 6
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}
Probab=8.20 E-value=85 Score=23.10 Aligned_cols=15 Identities=40% Similarity=0.581 Sum_probs=12.5
Q ss_pred hhhhcCCccCCCCCC
Q 021515 290 SWRKYGQKPIKGSPH 304 (311)
Q Consensus 290 ~WRKYGQK~Ikgs~~ 304 (311)
-+=||+-+.|.||||
T Consensus 70 i~V~~~g~~I~gSPF 84 (89)
T 3cnk_A 70 LVVKWGHEHIPGSPY 84 (89)
T ss_dssp EEEEETTEECTTCSE
T ss_pred EEEEECCEECCCCCE
Confidence 456788899999998
No 7
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=7.87 E-value=2.6e+02 Score=19.79 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH
Q 021515 25 AVQEAASEGMQSIGE 39 (311)
Q Consensus 25 AVqEAAsAGLeS~e~ 39 (311)
|=|+||..+|+.+..
T Consensus 54 Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 54 AKARAAQSALATVFN 68 (71)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 458899989887654
No 8
>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A
Probab=7.46 E-value=96 Score=23.13 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=12.6
Q ss_pred hhhhcCCccCCCCCC
Q 021515 290 SWRKYGQKPIKGSPH 304 (311)
Q Consensus 290 ~WRKYGQK~Ikgs~~ 304 (311)
-+=||+-+.|.||||
T Consensus 77 i~V~~~g~~V~gSPF 91 (96)
T 1v05_A 77 LIVKWGDESVPGSPF 91 (96)
T ss_dssp EEEEETTEECTTCSE
T ss_pred EEEEECCEECCCCCE
Confidence 455788899999998
No 9
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=7.38 E-value=1.1e+02 Score=23.58 Aligned_cols=16 Identities=38% Similarity=0.358 Sum_probs=13.3
Q ss_pred hhhhcCCccCCCCCCC
Q 021515 290 SWRKYGQKPIKGSPHP 305 (311)
Q Consensus 290 ~WRKYGQK~Ikgs~~P 305 (311)
-.=||+-+.|.||||.
T Consensus 84 i~V~~~g~~I~gSPF~ 99 (115)
T 2d7m_A 84 ITIKYGGDEIPYSPFR 99 (115)
T ss_dssp EEEEESSCBCTTCSEE
T ss_pred EEEEECCEECCCCCEE
Confidence 4568899999999984
No 10
>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=6.76 E-value=1.3e+02 Score=23.07 Aligned_cols=16 Identities=31% Similarity=0.382 Sum_probs=12.9
Q ss_pred hhhhcCCccCCCCCCC
Q 021515 290 SWRKYGQKPIKGSPHP 305 (311)
Q Consensus 290 ~WRKYGQK~Ikgs~~P 305 (311)
-.=||+-+.|.||||.
T Consensus 83 i~V~~~g~~V~gSPF~ 98 (108)
T 2dj4_A 83 VSVKYADEEIPRSPFK 98 (108)
T ss_dssp EEEEESSSBCTTCSEE
T ss_pred EEEEECCEECCCCCEE
Confidence 3457888999999984
Done!