Query 021517
Match_columns 311
No_of_seqs 275 out of 1817
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:36:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.7E-57 3.7E-62 447.5 15.8 310 1-310 261-626 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.5E-47 3.2E-52 393.1 29.9 309 1-310 296-642 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.1E-33 8.8E-38 246.9 6.3 173 1-173 101-284 (287)
4 PRK04841 transcriptional regul 98.9 7.9E-08 1.7E-12 98.3 16.7 199 2-209 122-334 (903)
5 PF13855 LRR_8: Leucine rich r 98.5 7.2E-08 1.6E-12 64.4 2.9 54 257-310 1-57 (61)
6 PF12799 LRR_4: Leucine Rich r 98.5 8.2E-08 1.8E-12 59.4 1.9 40 257-296 1-41 (44)
7 KOG4658 Apoptotic ATPase [Sign 98.0 1E-06 2.2E-11 88.6 -0.7 75 237-311 573-651 (889)
8 KOG0444 Cytoskeletal regulator 98.0 1.2E-06 2.6E-11 82.5 -0.6 65 246-310 114-181 (1255)
9 KOG0617 Ras suppressor protein 98.0 6.1E-07 1.3E-11 71.5 -2.2 62 248-309 117-180 (264)
10 KOG0617 Ras suppressor protein 97.9 2.4E-06 5.1E-11 68.2 -0.5 64 247-310 45-110 (264)
11 KOG0472 Leucine-rich repeat pr 97.8 5.7E-06 1.2E-10 74.1 0.0 61 247-308 240-303 (565)
12 PF12799 LRR_4: Leucine Rich r 97.7 1.8E-05 3.9E-10 48.9 1.7 32 279-310 1-32 (44)
13 PLN03150 hypothetical protein; 97.7 1.8E-05 3.9E-10 77.5 2.6 62 249-310 433-498 (623)
14 PF13855 LRR_8: Leucine rich r 97.6 5.1E-05 1.1E-09 50.4 3.0 45 247-291 13-61 (61)
15 PF00560 LRR_1: Leucine Rich R 97.5 5.1E-05 1.1E-09 39.3 1.2 22 280-301 1-22 (22)
16 PRK00080 ruvB Holliday junctio 97.4 0.00049 1.1E-08 62.2 7.5 156 29-191 151-313 (328)
17 PLN00113 leucine-rich repeat r 97.4 9.4E-05 2E-09 76.5 2.5 62 249-310 179-244 (968)
18 KOG0618 Serine/threonine phosp 97.3 3.1E-05 6.6E-10 76.1 -1.6 60 249-308 375-436 (1081)
19 COG3903 Predicted ATPase [Gene 97.2 0.00027 5.9E-09 63.9 3.5 205 1-210 88-317 (414)
20 PLN00113 leucine-rich repeat r 97.2 0.00023 4.9E-09 73.6 2.8 62 249-310 203-268 (968)
21 PF14580 LRR_9: Leucine-rich r 97.1 0.00022 4.8E-09 58.1 2.0 53 257-309 64-120 (175)
22 TIGR00635 ruvB Holliday juncti 97.1 0.0059 1.3E-07 54.5 11.2 154 29-192 130-293 (305)
23 COG2909 MalT ATP-dependent tra 97.1 0.0019 4E-08 63.6 7.9 197 2-210 130-341 (894)
24 PF05729 NACHT: NACHT domain 97.1 0.0016 3.4E-08 52.1 6.3 69 1-69 81-163 (166)
25 KOG0472 Leucine-rich repeat pr 97.0 8.5E-05 1.8E-09 66.8 -1.6 64 247-310 218-283 (565)
26 PRK06893 DNA replication initi 97.0 0.0026 5.7E-08 54.3 7.6 95 4-100 94-203 (229)
27 KOG0444 Cytoskeletal regulator 97.0 0.00017 3.6E-09 68.5 -0.2 61 247-307 234-296 (1255)
28 PLN03210 Resistant to P. syrin 96.9 0.00082 1.8E-08 70.7 4.4 61 249-309 625-688 (1153)
29 PF14580 LRR_9: Leucine-rich r 96.9 0.00042 9.1E-09 56.4 1.8 54 257-310 42-96 (175)
30 KOG0618 Serine/threonine phosp 96.9 0.00014 3.1E-09 71.5 -1.3 63 248-310 58-122 (1081)
31 PF00560 LRR_1: Leucine Rich R 96.9 0.00029 6.4E-09 36.4 0.3 19 258-276 1-19 (22)
32 PF01637 Arch_ATPase: Archaeal 96.8 0.0079 1.7E-07 50.9 8.9 97 1-99 118-233 (234)
33 TIGR03015 pepcterm_ATPase puta 96.7 0.063 1.4E-06 46.8 13.7 103 1-104 123-242 (269)
34 PF13504 LRR_7: Leucine rich r 96.5 0.0015 3.3E-08 31.4 1.1 16 280-295 2-17 (17)
35 PF13504 LRR_7: Leucine rich r 96.3 0.0018 4E-08 31.1 1.0 17 257-273 1-17 (17)
36 PLN03150 hypothetical protein; 96.3 0.0029 6.2E-08 62.2 3.3 53 258-310 419-474 (623)
37 PRK15387 E3 ubiquitin-protein 96.2 0.0021 4.7E-08 64.0 1.5 52 257-310 402-453 (788)
38 KOG3665 ZYG-1-like serine/thre 96.2 0.0016 3.4E-08 64.4 0.5 54 257-311 173-229 (699)
39 KOG1259 Nischarin, modulator o 95.9 0.0034 7.4E-08 54.7 1.1 63 248-310 297-360 (490)
40 COG4886 Leucine-rich repeat (L 95.8 0.0031 6.7E-08 58.4 0.6 60 249-308 130-192 (394)
41 KOG4579 Leucine-rich repeat (L 95.7 0.0018 3.8E-08 50.1 -0.9 50 258-307 78-128 (177)
42 KOG0532 Leucine-rich repeat (L 95.7 0.0022 4.7E-08 60.4 -0.5 64 247-310 133-197 (722)
43 PRK15370 E3 ubiquitin-protein 95.7 0.011 2.4E-07 59.0 4.0 58 249-310 213-270 (754)
44 KOG1259 Nischarin, modulator o 95.5 0.0045 9.8E-08 54.0 0.6 53 257-310 284-337 (490)
45 PRK15370 E3 ubiquitin-protein 95.4 0.012 2.7E-07 58.7 3.2 40 258-298 263-302 (754)
46 COG3899 Predicted ATPase [Gene 95.4 0.12 2.7E-06 52.6 10.3 202 1-205 154-384 (849)
47 smart00370 LRR Leucine-rich re 95.3 0.01 2.2E-07 31.8 1.4 22 278-299 1-22 (26)
48 smart00369 LRR_TYP Leucine-ric 95.3 0.01 2.2E-07 31.8 1.4 22 278-299 1-22 (26)
49 KOG0532 Leucine-rich repeat (L 95.3 0.0047 1E-07 58.2 -0.1 62 248-309 111-173 (722)
50 COG4886 Leucine-rich repeat (L 95.2 0.012 2.7E-07 54.3 2.7 55 257-311 116-172 (394)
51 PRK09087 hypothetical protein; 95.2 0.44 9.5E-06 40.6 11.8 92 4-99 90-194 (226)
52 PRK07471 DNA polymerase III su 95.2 0.42 9.1E-06 43.8 12.3 93 2-100 142-238 (365)
53 PF13173 AAA_14: AAA domain 94.8 0.042 9.2E-07 42.2 4.1 60 2-61 62-127 (128)
54 PRK00411 cdc6 cell division co 94.8 0.81 1.8E-05 42.3 13.3 179 2-188 139-358 (394)
55 KOG3665 ZYG-1-like serine/thre 94.8 0.0058 1.3E-07 60.5 -1.1 61 249-310 138-203 (699)
56 PRK15387 E3 ubiquitin-protein 94.7 0.035 7.7E-07 55.5 4.3 19 257-275 242-260 (788)
57 KOG4194 Membrane glycoprotein 94.5 0.0068 1.5E-07 57.5 -1.3 60 251-310 310-373 (873)
58 KOG4194 Membrane glycoprotein 94.3 0.038 8.2E-07 52.6 3.3 53 257-309 173-228 (873)
59 PF07725 LRR_3: Leucine Rich R 94.3 0.033 7.1E-07 27.8 1.6 20 280-299 1-20 (20)
60 PRK05564 DNA polymerase III su 94.3 0.47 1E-05 42.5 10.2 89 4-98 96-188 (313)
61 TIGR03420 DnaA_homol_Hda DnaA 94.2 0.29 6.2E-06 41.4 8.3 96 4-101 93-202 (226)
62 TIGR00678 holB DNA polymerase 94.1 0.38 8.3E-06 39.5 8.6 86 2-95 97-186 (188)
63 KOG0531 Protein phosphatase 1, 94.0 0.03 6.5E-07 52.3 2.1 54 254-308 114-168 (414)
64 cd00116 LRR_RI Leucine-rich re 93.9 0.018 3.9E-07 51.3 0.3 60 251-310 158-229 (319)
65 cd00116 LRR_RI Leucine-rich re 93.6 0.023 5.1E-07 50.6 0.5 54 257-310 193-258 (319)
66 KOG1859 Leucine-rich repeat pr 93.2 0.028 6E-07 54.8 0.3 57 253-310 204-262 (1096)
67 PRK13342 recombination factor 93.1 0.96 2.1E-05 42.3 10.4 99 1-102 92-198 (413)
68 PRK08727 hypothetical protein; 93.0 0.67 1.5E-05 39.6 8.6 93 3-97 95-201 (233)
69 PRK09112 DNA polymerase III su 92.5 0.89 1.9E-05 41.5 9.0 95 2-100 142-240 (351)
70 PF14516 AAA_35: AAA-like doma 92.2 5.2 0.00011 36.1 13.6 54 48-107 193-246 (331)
71 COG1373 Predicted ATPase (AAA+ 92.1 0.54 1.2E-05 43.7 7.2 63 1-64 94-162 (398)
72 PRK08084 DNA replication initi 92.1 1.1 2.5E-05 38.3 8.8 93 4-98 100-207 (235)
73 PRK15386 type III secretion pr 91.9 0.19 4E-06 46.6 3.8 52 247-302 64-118 (426)
74 KOG2739 Leucine-rich acidic nu 91.8 0.12 2.6E-06 44.3 2.4 53 257-310 65-124 (260)
75 KOG4237 Extracellular matrix p 91.7 0.022 4.8E-07 51.6 -2.2 61 247-307 79-145 (498)
76 PRK14963 DNA polymerase III su 91.4 2.8 6.1E-05 40.2 11.4 94 2-97 117-214 (504)
77 smart00370 LRR Leucine-rich re 91.3 0.11 2.3E-06 27.7 1.0 20 257-276 2-21 (26)
78 smart00369 LRR_TYP Leucine-ric 91.3 0.11 2.3E-06 27.7 1.0 20 257-276 2-21 (26)
79 PRK06645 DNA polymerase III su 91.2 2 4.3E-05 41.2 10.0 94 2-97 129-226 (507)
80 PRK15386 type III secretion pr 91.0 0.17 3.7E-06 46.8 2.6 49 248-302 86-138 (426)
81 KOG4579 Leucine-rich repeat (L 90.5 0.013 2.9E-07 45.4 -4.2 52 246-297 88-141 (177)
82 KOG0531 Protein phosphatase 1, 90.3 0.13 2.7E-06 48.1 1.2 40 257-296 140-179 (414)
83 PRK07003 DNA polymerase III su 90.0 5.1 0.00011 40.2 11.9 96 3-100 121-221 (830)
84 PRK05642 DNA replication initi 89.9 2.6 5.5E-05 36.1 8.9 95 4-100 100-208 (234)
85 PRK14961 DNA polymerase III su 89.8 3.5 7.7E-05 37.8 10.3 94 3-98 121-218 (363)
86 TIGR02928 orc1/cdc6 family rep 89.5 16 0.00035 33.2 14.6 182 1-189 129-351 (365)
87 TIGR02397 dnaX_nterm DNA polym 89.2 4.8 0.0001 36.5 10.7 97 3-101 119-219 (355)
88 PRK14087 dnaA chromosomal repl 89.0 2.5 5.4E-05 40.0 8.8 99 4-102 209-321 (450)
89 PRK06620 hypothetical protein; 88.9 5.6 0.00012 33.5 10.1 87 4-94 88-183 (214)
90 KOG4237 Extracellular matrix p 88.6 0.19 4.2E-06 45.7 1.0 59 246-305 57-118 (498)
91 PRK05707 DNA polymerase III su 87.9 3.6 7.7E-05 37.2 8.7 91 4-100 109-203 (328)
92 PRK07940 DNA polymerase III su 87.7 4.3 9.4E-05 37.6 9.3 91 3-100 119-213 (394)
93 smart00364 LRR_BAC Leucine-ric 87.5 0.35 7.5E-06 25.9 1.2 18 279-296 2-19 (26)
94 PRK12402 replication factor C 87.1 4.4 9.6E-05 36.3 9.0 94 3-98 127-224 (337)
95 PRK00440 rfc replication facto 86.5 15 0.00032 32.6 11.9 93 3-97 104-200 (319)
96 KOG2982 Uncharacterized conser 86.1 0.68 1.5E-05 40.8 2.9 49 257-307 97-151 (418)
97 PRK12323 DNA polymerase III su 86.0 3.1 6.7E-05 41.0 7.6 97 2-100 125-225 (700)
98 PF00308 Bac_DnaA: Bacterial d 85.5 4.5 9.7E-05 34.2 7.6 89 4-94 100-202 (219)
99 PRK08903 DnaA regulatory inact 85.5 6.7 0.00014 33.1 8.8 99 4-104 93-203 (227)
100 PRK06090 DNA polymerase III su 85.1 14 0.00031 33.2 11.0 87 4-100 111-201 (319)
101 KOG1644 U2-associated snRNP A' 84.6 0.95 2.1E-05 37.6 2.9 38 257-294 64-103 (233)
102 PRK14959 DNA polymerase III su 84.3 13 0.00028 36.7 10.9 101 2-104 120-225 (624)
103 TIGR01242 26Sp45 26S proteasom 84.1 3.9 8.4E-05 37.5 7.1 88 3-94 217-328 (364)
104 KOG3207 Beta-tubulin folding c 84.1 0.81 1.8E-05 42.3 2.6 53 257-309 271-333 (505)
105 smart00365 LRR_SD22 Leucine-ri 84.0 0.86 1.9E-05 24.4 1.6 17 278-294 1-17 (26)
106 KOG1644 U2-associated snRNP A' 83.0 1.1 2.4E-05 37.2 2.7 63 246-308 75-146 (233)
107 PF13516 LRR_6: Leucine Rich r 83.0 0.63 1.4E-05 24.1 0.9 15 278-292 1-15 (24)
108 KOG1859 Leucine-rich repeat pr 82.6 0.14 3E-06 50.3 -3.0 47 249-296 178-226 (1096)
109 PRK08769 DNA polymerase III su 81.1 11 0.00024 33.9 8.6 90 3-100 115-208 (319)
110 PLN03025 replication factor C 81.0 17 0.00037 32.6 9.9 91 3-95 101-195 (319)
111 PRK07399 DNA polymerase III su 80.9 19 0.00041 32.3 10.1 94 2-100 125-221 (314)
112 PRK04195 replication factor C 80.4 52 0.0011 31.4 13.5 99 2-104 99-206 (482)
113 PRK13341 recombination factor 79.9 12 0.00025 37.8 9.1 90 2-94 110-211 (725)
114 PRK14962 DNA polymerase III su 79.4 19 0.00041 34.4 10.0 101 2-104 118-223 (472)
115 PRK14960 DNA polymerase III su 77.9 14 0.00031 36.6 8.8 95 2-98 119-217 (702)
116 PRK14970 DNA polymerase III su 77.6 18 0.00039 33.0 9.2 93 2-96 109-205 (367)
117 PRK14955 DNA polymerase III su 77.5 14 0.0003 34.3 8.5 94 2-97 128-225 (397)
118 KOG2739 Leucine-rich acidic nu 77.4 1.6 3.5E-05 37.5 2.0 38 257-295 91-132 (260)
119 KOG3207 Beta-tubulin folding c 77.1 0.74 1.6E-05 42.6 -0.1 55 257-311 146-206 (505)
120 PRK08691 DNA polymerase III su 76.4 14 0.0003 36.9 8.3 95 2-98 120-218 (709)
121 TIGR02903 spore_lon_C ATP-depe 75.9 11 0.00025 37.1 7.7 86 16-103 309-398 (615)
122 PRK14957 DNA polymerase III su 75.8 20 0.00044 34.8 9.2 98 2-101 120-222 (546)
123 KOG0473 Leucine-rich repeat pr 75.5 0.22 4.8E-06 42.2 -3.5 46 247-292 77-124 (326)
124 PRK07764 DNA polymerase III su 75.4 39 0.00085 34.7 11.5 92 3-96 122-217 (824)
125 PRK14956 DNA polymerase III su 75.1 22 0.00047 33.9 9.0 92 3-96 123-218 (484)
126 PRK14950 DNA polymerase III su 74.9 36 0.00077 33.5 10.9 97 2-100 121-221 (585)
127 PRK14964 DNA polymerase III su 74.5 28 0.00061 33.3 9.7 93 3-97 118-214 (491)
128 PRK14949 DNA polymerase III su 74.5 23 0.00049 36.5 9.4 96 2-99 120-219 (944)
129 TIGR00362 DnaA chromosomal rep 74.1 21 0.00046 33.1 8.8 91 4-96 202-306 (405)
130 PRK14951 DNA polymerase III su 73.7 36 0.00078 33.7 10.4 95 3-99 126-224 (618)
131 PRK14971 DNA polymerase III su 73.5 41 0.00089 33.3 10.9 93 3-97 123-219 (614)
132 PF02463 SMC_N: RecF/RecN/SMC 73.2 3.7 8E-05 34.4 3.2 42 4-45 161-205 (220)
133 PRK08451 DNA polymerase III su 73.1 33 0.00073 33.2 9.9 96 2-99 118-217 (535)
134 COG2256 MGS1 ATPase related to 72.7 15 0.00032 34.0 6.9 94 1-97 104-209 (436)
135 PRK06964 DNA polymerase III su 72.5 77 0.0017 28.9 12.1 87 4-100 135-225 (342)
136 PRK07133 DNA polymerase III su 72.1 39 0.00084 34.0 10.3 97 2-100 119-220 (725)
137 PRK06305 DNA polymerase III su 71.6 58 0.0013 30.9 11.1 98 2-101 122-224 (451)
138 PRK14954 DNA polymerase III su 71.5 32 0.0007 34.0 9.6 96 2-99 128-228 (620)
139 TIGR02880 cbbX_cfxQ probable R 71.1 14 0.00031 32.5 6.6 67 3-69 123-208 (284)
140 PRK00149 dnaA chromosomal repl 70.4 28 0.00061 32.9 8.8 114 4-119 214-349 (450)
141 PRK14086 dnaA chromosomal repl 70.3 34 0.00074 33.7 9.3 88 4-93 380-481 (617)
142 KOG0989 Replication factor C, 69.6 15 0.00033 32.7 6.1 89 4-94 132-224 (346)
143 PRK07994 DNA polymerase III su 69.4 27 0.00059 34.7 8.5 96 2-99 120-219 (647)
144 smart00368 LRR_RI Leucine rich 69.0 3.3 7.2E-05 22.4 1.3 12 280-291 3-14 (28)
145 PRK06871 DNA polymerase III su 68.9 49 0.0011 29.9 9.5 86 4-96 110-199 (325)
146 cd00561 CobA_CobO_BtuR ATP:cor 68.2 8 0.00017 30.9 3.9 37 4-40 98-139 (159)
147 PHA02544 44 clamp loader, smal 67.9 70 0.0015 28.4 10.5 65 3-67 102-171 (316)
148 PRK09111 DNA polymerase III su 66.9 34 0.00073 33.7 8.6 95 3-99 134-232 (598)
149 PRK04132 replication factor C 66.7 77 0.0017 32.7 11.2 94 3-98 632-729 (846)
150 KOG0741 AAA+-type ATPase [Post 66.4 23 0.00051 34.1 7.0 96 4-104 601-716 (744)
151 COG0593 DnaA ATPase involved i 66.0 39 0.00084 31.5 8.4 116 4-119 178-313 (408)
152 PRK05896 DNA polymerase III su 65.4 50 0.0011 32.5 9.3 97 4-102 122-223 (605)
153 PRK14969 DNA polymerase III su 65.4 43 0.00094 32.4 9.0 97 2-100 120-221 (527)
154 KOG0473 Leucine-rich repeat pr 65.3 0.67 1.5E-05 39.4 -2.8 52 257-308 65-117 (326)
155 KOG2982 Uncharacterized conser 63.5 1.8 3.8E-05 38.3 -0.7 46 257-302 71-124 (418)
156 PRK14088 dnaA chromosomal repl 63.4 54 0.0012 30.9 9.1 89 4-94 197-299 (440)
157 PRK14953 DNA polymerase III su 62.7 93 0.002 29.8 10.6 97 2-100 120-220 (486)
158 PRK07993 DNA polymerase III su 62.5 57 0.0012 29.6 8.7 88 3-97 110-201 (334)
159 PRK14952 DNA polymerase III su 62.4 81 0.0018 31.0 10.2 98 3-102 120-222 (584)
160 smart00367 LRR_CC Leucine-rich 61.2 5.2 0.00011 21.0 1.1 14 279-292 2-16 (26)
161 KOG2123 Uncharacterized conser 61.0 0.89 1.9E-05 39.7 -2.9 51 257-307 41-93 (388)
162 KOG1909 Ran GTPase-activating 60.9 2.2 4.7E-05 38.4 -0.7 39 254-292 209-254 (382)
163 PRK06647 DNA polymerase III su 60.3 78 0.0017 31.0 9.8 94 3-98 121-218 (563)
164 PF06144 DNA_pol3_delta: DNA p 59.8 65 0.0014 25.4 8.0 95 2-98 58-164 (172)
165 PRK12422 chromosomal replicati 59.7 50 0.0011 31.2 8.2 87 4-92 205-305 (445)
166 PRK14958 DNA polymerase III su 58.8 83 0.0018 30.4 9.6 94 3-98 121-218 (509)
167 CHL00181 cbbX CbbX; Provisiona 57.4 1.1E+02 0.0023 27.1 9.4 67 4-70 125-210 (287)
168 KOG3864 Uncharacterized conser 57.2 3 6.5E-05 34.7 -0.4 15 278-292 150-165 (221)
169 TIGR02881 spore_V_K stage V sp 56.8 41 0.0009 29.0 6.7 67 4-70 108-192 (261)
170 PRK08058 DNA polymerase III su 56.7 77 0.0017 28.6 8.6 65 4-68 113-181 (329)
171 cd00009 AAA The AAA+ (ATPases 56.4 18 0.00039 27.1 4.0 39 2-40 85-131 (151)
172 PRK14948 DNA polymerase III su 55.0 1.2E+02 0.0027 30.0 10.3 96 3-100 123-222 (620)
173 PRK05563 DNA polymerase III su 54.4 1.4E+02 0.0029 29.3 10.3 94 2-97 120-217 (559)
174 PRK07132 DNA polymerase III su 52.2 1.1E+02 0.0024 27.3 8.6 89 3-99 92-184 (299)
175 PRK03992 proteasome-activating 49.8 73 0.0016 29.5 7.4 62 29-94 270-337 (389)
176 PF13177 DNA_pol3_delta2: DNA 49.6 24 0.00052 28.2 3.7 54 4-57 105-162 (162)
177 PF13306 LRR_5: Leucine rich r 47.1 36 0.00078 25.3 4.3 38 257-296 58-97 (129)
178 PRK14965 DNA polymerase III su 45.8 84 0.0018 30.9 7.5 96 3-100 121-221 (576)
179 TIGR01128 holA DNA polymerase 45.6 2.1E+02 0.0045 25.0 10.2 95 2-98 47-151 (302)
180 KOG2123 Uncharacterized conser 42.1 3.6 7.9E-05 36.1 -2.2 53 257-310 19-71 (388)
181 PF07328 VirD1: T-DNA border e 37.1 66 0.0014 24.6 4.0 84 32-116 26-109 (147)
182 TIGR00708 cobA cob(I)alamin ad 36.0 48 0.001 26.9 3.5 37 4-40 100-141 (173)
183 PTZ00112 origin recognition co 36.0 4E+02 0.0087 28.1 10.3 99 3-104 871-986 (1164)
184 PRK05986 cob(I)alamin adenolsy 35.3 57 0.0012 27.0 3.8 37 4-40 118-159 (191)
185 CHL00176 ftsH cell division pr 35.2 3.3E+02 0.0071 27.2 9.7 89 2-93 276-387 (638)
186 PTZ00454 26S protease regulato 35.1 1.8E+02 0.0038 27.1 7.5 68 2-69 239-329 (398)
187 PRK07452 DNA polymerase III su 34.8 3.3E+02 0.0071 24.2 9.7 96 2-99 62-171 (326)
188 PF13306 LRR_5: Leucine rich r 34.3 57 0.0012 24.1 3.6 60 248-309 24-88 (129)
189 PRK08116 hypothetical protein; 32.8 29 0.00062 30.3 1.9 36 4-39 181-221 (268)
190 PF07693 KAP_NTPase: KAP famil 31.9 3.6E+02 0.0077 23.7 9.7 66 1-68 172-262 (325)
191 PF14050 Nudc_N: N-terminal co 31.8 86 0.0019 20.7 3.5 30 79-108 3-32 (62)
192 PRK08181 transposase; Validate 31.2 29 0.00063 30.4 1.6 36 4-39 170-209 (269)
193 TIGR03689 pup_AAA proteasome A 30.8 1.5E+02 0.0031 28.8 6.3 68 2-69 290-378 (512)
194 COG2109 BtuR ATP:corrinoid ade 27.6 74 0.0016 26.3 3.2 37 4-40 125-166 (198)
195 TIGR01069 mutS2 MutS2 family p 26.9 1E+02 0.0022 31.5 4.8 110 2-121 403-522 (771)
196 PF10236 DAP3: Mitochondrial r 25.6 2.2E+02 0.0047 25.4 6.2 47 50-96 258-305 (309)
197 PRK07276 DNA polymerase III su 25.6 4.8E+02 0.01 23.1 8.6 63 3-66 106-172 (290)
198 TIGR01241 FtsH_fam ATP-depende 25.3 4.2E+02 0.0092 25.3 8.5 63 29-94 193-260 (495)
199 PF02572 CobA_CobO_BtuR: ATP:c 24.1 47 0.001 26.9 1.5 37 4-40 99-140 (172)
200 PF00004 AAA: ATPase family as 23.7 2E+02 0.0044 21.0 5.0 11 2-12 59-69 (132)
201 PF02562 PhoH: PhoH-like prote 22.6 76 0.0016 26.5 2.5 36 2-40 120-157 (205)
202 KOG2035 Replication factor C, 22.1 5.7E+02 0.012 22.9 8.6 91 27-120 155-259 (351)
203 PRK06921 hypothetical protein; 21.4 51 0.0011 28.7 1.4 35 4-38 180-224 (266)
204 PF03861 ANTAR: ANTAR domain; 21.3 1.1E+02 0.0024 19.4 2.6 31 54-87 26-56 (56)
205 KOG4231 Intracellular membrane 21.1 10 0.00022 36.0 -3.2 52 257-308 104-156 (763)
206 CHL00195 ycf46 Ycf46; Provisio 21.0 3.8E+02 0.0081 25.8 7.1 70 2-71 319-407 (489)
207 PRK06835 DNA replication prote 20.8 54 0.0012 29.7 1.4 36 4-39 249-289 (329)
208 COG3267 ExeA Type II secretory 20.8 2.5E+02 0.0055 24.5 5.3 52 51-102 195-247 (269)
209 PRK10869 recombination and rep 20.5 4.1E+02 0.0089 26.0 7.4 91 4-104 455-551 (553)
210 PRK06526 transposase; Provisio 20.3 64 0.0014 27.9 1.7 35 4-39 162-201 (254)
211 PRK10536 hypothetical protein; 20.3 79 0.0017 27.5 2.2 35 3-40 178-214 (262)
212 cd03241 ABC_RecN RecN ATPase i 20.3 3.3E+02 0.0072 23.6 6.3 41 4-44 195-238 (276)
213 TIGR00611 recf recF protein. A 20.2 78 0.0017 29.1 2.3 38 3-42 304-344 (365)
214 PF01695 IstB_IS21: IstB-like 20.1 25 0.00055 28.5 -0.8 10 4-13 111-120 (178)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-57 Score=447.46 Aligned_cols=310 Identities=23% Similarity=0.292 Sum_probs=252.5
Q ss_pred CeEEEEEeCCCCHHHHHHHHhcCCCCCCCcEEEEEeCchhHHHh-cCCCceEEcCCCCHHHHHHHHHHhhcCCC-CCCcc
Q 021517 1 MKVLIVFDDVTCFSQIESLIGSLDWLTPVSRIIITTRNKQVLRN-WGVRKIYEMKALEYHHAIRLFSRHAFKQN-HPDVG 78 (311)
Q Consensus 1 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~va~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~-~~~~~ 78 (311)
|||+|||||||+..+|+.+..++|....||+|++|||++.||.. +++...++++.|+++|||.||++.+|... ...+.
T Consensus 261 krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~ 340 (889)
T KOG4658|consen 261 KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPD 340 (889)
T ss_pred CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccccccc
Confidence 79999999999999999999999988899999999999999999 78888999999999999999999998863 45566
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHhccc-cHHHHHHHHHHHhcc-------CcccHHHHHhhhcccCchhhhhhhhhhh
Q 021517 79 YEELSCKVMKYAQGVPLALKVLGCFLHKR-EKEVWESATDKLQRI-------LYPSILEVLKISYDSLDDKEKNIFLDVA 150 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai~~~~~~L~~~-~~~~w~~~~~~l~~~-------~~~~i~~~l~~sy~~L~~~~k~cfl~ls 150 (311)
+.++|++|+++|+|+|||++++|+.|+.+ +..+|+++.+.+.+. ..+.+.+++++||+.||++.|.||+|||
T Consensus 341 i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLyca 420 (889)
T KOG4658|consen 341 IEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCA 420 (889)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhc
Confidence 89999999999999999999999999998 888999999988665 1357899999999999988999999999
Q ss_pred cCCCCcC--HHHHHHHHHHcCCCc------------ccchHHHhhcccceecCC----CcEEeCHHHHHHHHHHHhhhc-
Q 021517 151 CFFQGED--VDLVMKFFNASGFYP------------EIGMSVLVDKSLIAIDSH----KKITMHDLLQELGREIVRQES- 211 (311)
Q Consensus 151 ~fp~~~~--~~~l~~~w~a~g~~~------------~~~~~~L~~~sl~~~~~~----~~~~mH~lv~~~~~~~~~~~~- 211 (311)
+||+|++ ++.|+..|+||||+. ..|+++|++++|++.... .+|+|||+||++|..++.+.+
T Consensus 421 lFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~ 500 (889)
T KOG4658|consen 421 LFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGK 500 (889)
T ss_pred cCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccc
Confidence 9999976 689999999999873 456999999999998752 689999999999999999433
Q ss_pred ------CCCC-------------Cceeecchh-hHHHHHhhccCc-ccc-ccccCc-cccccCCC-CCC-CceeEEeeeC
Q 021517 212 ------IDPA-------------NRSRLWHHE-DIYEVLTYNTFY-RSS-VNGKNK-CKISYLQD-PGF-AEVKYLHWYG 266 (311)
Q Consensus 212 ------~~~~-------------~~~~l~~~~-~~~~~~~~~~~~-l~~-~~~~~~-~~~~lp~~-~~~-~~Lr~L~l~~ 266 (311)
...+ ..+++.... .+.+........ +++ +-...+ ....++.. +.. ++||||||++
T Consensus 501 ~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~ 580 (889)
T KOG4658|consen 501 QEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSG 580 (889)
T ss_pred cccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCC
Confidence 1110 111111111 111111111111 211 111101 12344443 455 9999999998
Q ss_pred C-CCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 267 Y-PLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 267 ~-~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
| .+.+||++| +|.|||||+|++|+|++||.++++|++|.||+++
T Consensus 581 ~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 581 NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccc
Confidence 8 489999999 7999999999999999999999999999999875
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.5e-47 Score=393.14 Aligned_cols=309 Identities=35% Similarity=0.601 Sum_probs=273.3
Q ss_pred CeEEEEEeCCCCHHHHHHHHhcCCCCCCCcEEEEEeCchhHHHhcCCCceEEcCCCCHHHHHHHHHHhhcCCCCCCccHH
Q 021517 1 MKVLIVFDDVTCFSQIESLIGSLDWLTPVSRIIITTRNKQVLRNWGVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYE 80 (311)
Q Consensus 1 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~ 80 (311)
||+||||||||+.++|+.+.....+.++||+||||||+..++..++++++|+++.+++++||+||+++||+...+++++.
T Consensus 296 krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~ 375 (1153)
T PLN03210 296 RKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFM 375 (1153)
T ss_pred CeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHH
Confidence 68999999999999999999877777899999999999999988888899999999999999999999998777777889
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhccccHHHHHHHHHHHhccCcccHHHHHhhhcccCch-hhhhhhhhhhcCCCCcCHH
Q 021517 81 ELSCKVMKYAQGVPLALKVLGCFLHKREKEVWESATDKLQRILYPSILEVLKISYDSLDD-KEKNIFLDVACFFQGEDVD 159 (311)
Q Consensus 81 ~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~~~~l~~~~~~~i~~~l~~sy~~L~~-~~k~cfl~ls~fp~~~~~~ 159 (311)
+++++|+++|+|+|||++++|++|++++..+|+.++++++...+.++..++++||+.|++ ..|.||+++|+|+.+.+.+
T Consensus 376 ~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~ 455 (1153)
T PLN03210 376 ELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN 455 (1153)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH
Confidence 999999999999999999999999999999999999999988888999999999999987 4899999999999998888
Q ss_pred HHHHHHHHcCCCcccchHHHhhcccceecCCCcEEeCHHHHHHHHHHHhhhcCCCCCceeecchhhHHHHHhhccCc---
Q 021517 160 LVMKFFNASGFYPEIGMSVLVDKSLIAIDSHKKITMHDLLQELGREIVRQESIDPANRSRLWHHEDIYEVLTYNTFY--- 236 (311)
Q Consensus 160 ~l~~~w~a~g~~~~~~~~~L~~~sl~~~~~~~~~~mH~lv~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--- 236 (311)
.+..++...++.++.+++.|+++||++.. .+++.|||++|++|+++++++..++++++++|.++++.+++....+.
T Consensus 456 ~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v 534 (1153)
T PLN03210 456 DIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKV 534 (1153)
T ss_pred HHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCccccee
Confidence 77776666777788889999999999887 67899999999999999998877889999999999999988876654
Q ss_pred ----ccc-------cccc---------------------CccccccCCCCCC--CceeEEeeeCCCCCCCCCCCCCCCce
Q 021517 237 ----RSS-------VNGK---------------------NKCKISYLQDPGF--AEVKYLHWYGYPLKSLPSNLSAKKLV 282 (311)
Q Consensus 237 ----l~~-------~~~~---------------------~~~~~~lp~~~~~--~~Lr~L~l~~~~i~~lP~~i~L~~L~ 282 (311)
+++ ++.. ......+|+++.. ..||+|+|.+++++++|+.+.+.+|+
T Consensus 535 ~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~ 614 (1153)
T PLN03210 535 LGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLV 614 (1153)
T ss_pred eEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCc
Confidence 110 0000 0012356777766 67999999999999999999889999
Q ss_pred EEEcCCCCccccccccccCccccccccC
Q 021517 283 LVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 283 ~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
.|+|++++++.||.+++.|++|+.++++
T Consensus 615 ~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls 642 (1153)
T PLN03210 615 KLQMQGSKLEKLWDGVHSLTGLRNIDLR 642 (1153)
T ss_pred EEECcCccccccccccccCCCCCEEECC
Confidence 9999999999999999999999988875
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.98 E-value=4.1e-33 Score=246.93 Aligned_cols=173 Identities=29% Similarity=0.516 Sum_probs=138.4
Q ss_pred CeEEEEEeCCCCHHHHHHHHhcCCCCCCCcEEEEEeCchhHHHhcCC-CceEEcCCCCHHHHHHHHHHhhcCCC-CCCcc
Q 021517 1 MKVLIVFDDVTCFSQIESLIGSLDWLTPVSRIIITTRNKQVLRNWGV-RKIYEMKALEYHHAIRLFSRHAFKQN-HPDVG 78 (311)
Q Consensus 1 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~va~~~~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~-~~~~~ 78 (311)
||+||||||||+...|+.+...++....||+||||||+..++..++. ...+++++|+++||++||.+.++... ..++.
T Consensus 101 ~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~ 180 (287)
T PF00931_consen 101 KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPED 180 (287)
T ss_dssp TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TT
T ss_pred ccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 58999999999999999998888777789999999999999887754 67999999999999999999997755 34455
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHhccc-cHHHHHHHHHHHhccC------cccHHHHHhhhcccCchhhhhhhhhhhc
Q 021517 79 YEELSCKVMKYAQGVPLALKVLGCFLHKR-EKEVWESATDKLQRIL------YPSILEVLKISYDSLDDKEKNIFLDVAC 151 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai~~~~~~L~~~-~~~~w~~~~~~l~~~~------~~~i~~~l~~sy~~L~~~~k~cfl~ls~ 151 (311)
..+.+++|+++|+|+||||+++|++|+.+ +..+|+.+++++.... ..++..++.+||+.||++.|+||+|||+
T Consensus 181 ~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~ 260 (287)
T PF00931_consen 181 LEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSI 260 (287)
T ss_dssp SCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcC
Confidence 66789999999999999999999999765 7789999998865532 3679999999999999999999999999
Q ss_pred CCCCcC--HHHHHHHHHHcCCCcc
Q 021517 152 FFQGED--VDLVMKFFNASGFYPE 173 (311)
Q Consensus 152 fp~~~~--~~~l~~~w~a~g~~~~ 173 (311)
||+++. ++.++++|+++|++..
T Consensus 261 f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 261 FPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp SGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred CCCCceECHHHHHHHHHHCCCCcc
Confidence 999965 7899999999998764
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=7.9e-08 Score=98.28 Aligned_cols=199 Identities=14% Similarity=0.154 Sum_probs=126.1
Q ss_pred eEEEEEeCCCCHH---HHHHHHhcCCCCCCCcEEEEEeCchhHH---HhcCCCceEEcC----CCCHHHHHHHHHHhhcC
Q 021517 2 KVLIVFDDVTCFS---QIESLIGSLDWLTPVSRIIITTRNKQVL---RNWGVRKIYEMK----ALEYHHAIRLFSRHAFK 71 (311)
Q Consensus 2 r~LlVLDdv~~~~---~~~~l~~~~~~~~~gs~IlvTTR~~~va---~~~~~~~~~~l~----~L~~~~a~~Lf~~~a~~ 71 (311)
+++|||||+...+ ..+.+...+....++.++|||||...-. .........++. +|+.+|+.++|....+.
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~ 201 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS 201 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC
Confidence 6899999997643 1222222222233567888999984211 111112345566 99999999999876532
Q ss_pred CCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccccHHHHHHHHHHHhccCcccHHHHHhh-hcccCchhhhhhhhhhh
Q 021517 72 QNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHKREKEVWESATDKLQRILYPSILEVLKI-SYDSLDDKEKNIFLDVA 150 (311)
Q Consensus 72 ~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~~~~l~~~~~~~i~~~l~~-sy~~L~~~~k~cfl~ls 150 (311)
. -..+.+.+|.+.|+|.|+++..++..++..+.. -......+.......+...+.- -++.||++.+..+...|
T Consensus 202 ~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a 275 (903)
T PRK04841 202 P-----IEAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCS 275 (903)
T ss_pred C-----CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 1 123557889999999999999988877544210 0111122221122345554433 37899999999999999
Q ss_pred cCCCCcCHHHHHHHHHHcCCCcccchHHHhhccccee-cC--CCcEEeCHHHHHHHHHHHhh
Q 021517 151 CFFQGEDVDLVMKFFNASGFYPEIGMSVLVDKSLIAI-DS--HKKITMHDLLQELGREIVRQ 209 (311)
Q Consensus 151 ~fp~~~~~~~l~~~w~a~g~~~~~~~~~L~~~sl~~~-~~--~~~~~mH~lv~~~~~~~~~~ 209 (311)
+++ .++.+-+..+.. .-.....+++|.+.+++.. .+ ...|+.|++++++.+.....
T Consensus 276 ~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~ 334 (903)
T PRK04841 276 VLR-SMNDALIVRVTG--EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQW 334 (903)
T ss_pred ccc-cCCHHHHHHHcC--CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHh
Confidence 986 666544433332 1123566899999999653 32 34799999999999987643
No 5
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.51 E-value=7.2e-08 Score=64.42 Aligned_cols=54 Identities=7% Similarity=0.124 Sum_probs=48.6
Q ss_pred CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCcccccc-ccccCccccccccC
Q 021517 257 AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWH-CVKVCISYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~l~i~ 310 (311)
++|++|++++|.+..+|... ++.+|++|++++|+|+.+|. .+..|++|++++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~ 57 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS 57 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc
Confidence 47999999999999999765 69999999999999999996 56999999999875
No 6
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.46 E-value=8.2e-08 Score=59.41 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=35.0
Q ss_pred CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCcccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWH 296 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~ 296 (311)
++|++|++++|+|+.+|..+ +|.+|++|+|++|.|+.+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47999999999999999988 89999999999999998774
No 7
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.00 E-value=1e-06 Score=88.63 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=62.3
Q ss_pred ccccccc-CccccccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCC-CccccccccccCccccccccCC
Q 021517 237 RSSVNGK-NKCKISYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDS-DIERLWHCVKVCISYYTCGIFQ 311 (311)
Q Consensus 237 l~~~~~~-~~~~~~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~-~i~~LP~~i~~L~~L~~l~i~q 311 (311)
+++++-. .....++|.+|+. -|||||+|++|.+..||.++ +|+.|+|||+..| .+...|..+..|.+||+|.+++
T Consensus 573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 4444433 3456789999999 99999999999999999999 8999999999998 4556666666699999998764
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.98 E-value=1.2e-06 Score=82.47 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=60.6
Q ss_pred cccccCCCCCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 246 CKISYLQDPGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 246 ~~~~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
...+.|..+.. +++-+|+|++++|+++|.++ +|.-|-+|||+++.+..||..|.+|.+||||+++
T Consensus 114 qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 114 QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcC
Confidence 35588999999 99999999999999999997 8999999999999999999999999999999875
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.98 E-value=6.1e-07 Score=71.46 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=55.0
Q ss_pred cccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCcccccccc
Q 021517 248 ISYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGI 309 (311)
Q Consensus 248 ~~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i 309 (311)
..+|+.+.. ..||-|.|..++++.+|..+ +|.+||.|.++.+++-+||++|+.|+.|+-|.|
T Consensus 117 ~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 117 NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhc
Confidence 367888887 88888888888889999999 899999999999999999999999999987765
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.87 E-value=2.4e-06 Score=68.16 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=57.2
Q ss_pred ccccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 247 KISYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 247 ~~~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
...+|..|.. ++|.+|++.++.|+++|.+| .|.+|+.|++.-+.+..+|.+.+.+.-|+.|++.
T Consensus 45 l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 45 LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 4577888888 99999999999999999999 7999999999889999999999999999988763
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.76 E-value=5.7e-06 Score=74.14 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=54.0
Q ss_pred ccccCCCCCC--CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccc
Q 021517 247 KISYLQDPGF--AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCG 308 (311)
Q Consensus 247 ~~~lp~~~~~--~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~ 308 (311)
...+|..++. .+|.+|||+.++++++|..+ .|++|.+|||+++.|..||-++++| +|+.|-
T Consensus 240 i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 240 IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLA 303 (565)
T ss_pred HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehh
Confidence 4567777764 99999999999999999999 5899999999999999999999999 777653
No 12
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=1.8e-05 Score=48.87 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=28.0
Q ss_pred CCceEEEcCCCCccccccccccCccccccccC
Q 021517 279 KKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 279 ~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
++|++|+|++|+|+++|..+++|++|++|+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~ 32 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLS 32 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEET
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEec
Confidence 47999999999999999999999999999875
No 13
>PLN03150 hypothetical protein; Provisional
Probab=97.71 E-value=1.8e-05 Score=77.55 Aligned_cols=62 Identities=11% Similarity=0.167 Sum_probs=54.2
Q ss_pred ccCCCCCC-CceeEEeeeCCCCC-CCCCCC-CCCCceEEEcCCCCcc-ccccccccCccccccccC
Q 021517 249 SYLQDPGF-AEVKYLHWYGYPLK-SLPSNL-SAKKLVLVEVPDSDIE-RLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~~~~-~~Lr~L~l~~~~i~-~lP~~i-~L~~L~~L~L~~~~i~-~LP~~i~~L~~L~~l~i~ 310 (311)
.+|..+.. ++|++|+|++|.+. .+|+++ +|.+|++|+|++|++. .+|.++++|.+|++|+++
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 56777777 99999999999986 888888 7999999999999887 789999999999998874
No 14
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.61 E-value=5.1e-05 Score=50.43 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=37.9
Q ss_pred ccccCCC-CCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCc
Q 021517 247 KISYLQD-PGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDI 291 (311)
Q Consensus 247 ~~~lp~~-~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i 291 (311)
...+|.. +.. ++|++|++++|.+..+|+.. ++.+|++|++++|+|
T Consensus 13 l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 13 LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3466754 455 99999999999999999765 799999999999975
No 15
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.48 E-value=5.1e-05 Score=39.31 Aligned_cols=22 Identities=5% Similarity=0.146 Sum_probs=15.7
Q ss_pred CceEEEcCCCCccccccccccC
Q 021517 280 KLVLVEVPDSDIERLWHCVKVC 301 (311)
Q Consensus 280 ~L~~L~L~~~~i~~LP~~i~~L 301 (311)
+|++|||++|+++++|.++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4777888887777777776654
No 16
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.41 E-value=0.00049 Score=62.18 Aligned_cols=156 Identities=13% Similarity=0.092 Sum_probs=95.5
Q ss_pred CcEEEEEeCchhHHHhc--CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhcc
Q 021517 29 VSRIIITTRNKQVLRNW--GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHK 106 (311)
Q Consensus 29 gs~IlvTTR~~~va~~~--~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~ 106 (311)
.+-|..|||...+.... .....+++++++.++..+++.+.+...+.. -..+.+..|++.|+|.|-.+..+...+.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~- 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR- 227 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH-
Confidence 45566777755443322 123478999999999999999887543221 2235788999999999954444443221
Q ss_pred ccHHHHHHHHH--HHhccCcccHHHHHhhhcccCchhhhhhhh-hhhcCCCC-cCHHHHHHHHHHcCCCcccchH-HHhh
Q 021517 107 REKEVWESATD--KLQRILYPSILEVLKISYDSLDDKEKNIFL-DVACFFQG-EDVDLVMKFFNASGFYPEIGMS-VLVD 181 (311)
Q Consensus 107 ~~~~~w~~~~~--~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl-~ls~fp~~-~~~~~l~~~w~a~g~~~~~~~~-~L~~ 181 (311)
.|..... .+....-......+...+..|++..+..+. ....|+.+ +..+.+...+..+....+..++ .|++
T Consensus 228 ----~~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 228 ----DFAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQ 303 (328)
T ss_pred ----HHHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHH
Confidence 2211110 000000122334556777888888777775 66677655 4567776666555555555667 8999
Q ss_pred cccceecCCC
Q 021517 182 KSLIAIDSHK 191 (311)
Q Consensus 182 ~sl~~~~~~~ 191 (311)
.+|++....|
T Consensus 304 ~~li~~~~~g 313 (328)
T PRK00080 304 QGFIQRTPRG 313 (328)
T ss_pred cCCcccCCch
Confidence 9999866544
No 17
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.36 E-value=9.4e-05 Score=76.46 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=42.6
Q ss_pred ccCCCCCC-CceeEEeeeCCCCC-CCCCCC-CCCCceEEEcCCCCcc-ccccccccCccccccccC
Q 021517 249 SYLQDPGF-AEVKYLHWYGYPLK-SLPSNL-SAKKLVLVEVPDSDIE-RLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~~~~-~~Lr~L~l~~~~i~-~lP~~i-~L~~L~~L~L~~~~i~-~LP~~i~~L~~L~~l~i~ 310 (311)
.+|..+.. ++|++|+|++|.+. .+|..+ ++.+|++|+|++|++. .+|.++++|++|++|+++
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 45666666 77777777777654 566666 6777777777777655 577777777777777653
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.31 E-value=3.1e-05 Score=76.08 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=53.7
Q ss_pred ccCCCCCCCceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccccccCccccccc
Q 021517 249 SYLQDPGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHCVKVCISYYTCG 308 (311)
Q Consensus 249 ~lp~~~~~~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~ 308 (311)
.+|--.+++|||+|+|++|.+.++|.+. +|..|+.|+|+|++++.||.++.++..|+||.
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLR 436 (1081)
T ss_pred chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHh
Confidence 4444444599999999999999999987 79999999999999999999999999999885
No 19
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.22 E-value=0.00027 Score=63.92 Aligned_cols=205 Identities=19% Similarity=0.224 Sum_probs=136.6
Q ss_pred CeEEEEEeCCCCHHH-HHHHHhcCCCCCCCcEEEEEeCchhHHHhcCCCceEEcCCCCHH-HHHHHHHHhhcCCCC---C
Q 021517 1 MKVLIVFDDVTCFSQ-IESLIGSLDWLTPVSRIIITTRNKQVLRNWGVRKIYEMKALEYH-HAIRLFSRHAFKQNH---P 75 (311)
Q Consensus 1 kr~LlVLDdv~~~~~-~~~l~~~~~~~~~gs~IlvTTR~~~va~~~~~~~~~~l~~L~~~-~a~~Lf~~~a~~~~~---~ 75 (311)
+|.++|+||..+... -..+...+..+.+.-.|+.|+|.... +..+..+.+++|+.. ++.++|...+..... -
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 466888999876643 22333333334455578899987642 244567888888876 789998877743221 1
Q ss_pred CccHHHHHHHHHHHhCCCchHHHHHHHHhccccHHHHHHHHH----HHhccC------cccHHHHHhhhcccCchhhhhh
Q 021517 76 DVGYEELSCKVMKYAQGVPLALKVLGCFLHKREKEVWESATD----KLQRIL------YPSILEVLKISYDSLDDKEKNI 145 (311)
Q Consensus 76 ~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~~~----~l~~~~------~~~i~~~l~~sy~~L~~~~k~c 145 (311)
.......+.+|.+..+|.|++|..+++..+.....+-...++ .++... .......+.+||.-|..-.+--
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~ 244 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERAL 244 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHH
Confidence 334456788999999999999999999998775444333322 222221 2457789999999999999999
Q ss_pred hhhhhcCCCCcCHHHHHHHHHHcCCCc--c-----cchHHHhhcccceecC---CCcEEeCHHHHHHHHHHHhhh
Q 021517 146 FLDVACFFQGEDVDLVMKFFNASGFYP--E-----IGMSVLVDKSLIAIDS---HKKITMHDLLQELGREIVRQE 210 (311)
Q Consensus 146 fl~ls~fp~~~~~~~l~~~w~a~g~~~--~-----~~~~~L~~~sl~~~~~---~~~~~mH~lv~~~~~~~~~~~ 210 (311)
|.-++.|...|..+ ...|.+-|-.. . ..+..+++.+++.... .-.|+.-+-++.|+..+..+.
T Consensus 245 ~~rLa~~~g~f~~~--l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 245 FGRLAVFVGGFDLG--LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred hcchhhhhhhhccc--HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888765 33444433221 2 2366788888887665 235677777777777665443
No 20
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.17 E-value=0.00023 Score=73.64 Aligned_cols=62 Identities=8% Similarity=0.083 Sum_probs=53.2
Q ss_pred ccCCCCCC-CceeEEeeeCCCCC-CCCCCC-CCCCceEEEcCCCCcc-ccccccccCccccccccC
Q 021517 249 SYLQDPGF-AEVKYLHWYGYPLK-SLPSNL-SAKKLVLVEVPDSDIE-RLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~~~~-~~Lr~L~l~~~~i~-~lP~~i-~L~~L~~L~L~~~~i~-~LP~~i~~L~~L~~l~i~ 310 (311)
.+|..++. ++|++|+|++|.+. .+|..+ ++.+|++|+|++|++. .+|.++++|++|++|+++
T Consensus 203 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 203 QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence 56778888 99999999999875 788888 7999999999999775 788899999999988775
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.14 E-value=0.00022 Score=58.08 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=17.7
Q ss_pred CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCcccccc--ccccCcccccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWH--CVKVCISYYTCGI 309 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~--~i~~L~~L~~l~i 309 (311)
+.|+.|++++|.|+++++.+ .+.+|+.|+|++++|..+-. .+..+++|+.|.+
T Consensus 64 ~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L 120 (175)
T PF14580_consen 64 PRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSL 120 (175)
T ss_dssp TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-
T ss_pred hhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeec
Confidence 66666666666666665444 35666666666665555432 2334444554444
No 22
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.12 E-value=0.0059 Score=54.46 Aligned_cols=154 Identities=15% Similarity=0.073 Sum_probs=94.3
Q ss_pred CcEEEEEeCchhHHHhc--CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhcc
Q 021517 29 VSRIIITTRNKQVLRNW--GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHK 106 (311)
Q Consensus 29 gs~IlvTTR~~~va~~~--~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~ 106 (311)
.+-|..||+...+.... .....+.+++++.++..+++.+.+..... .-..+....|++.|+|.|-.+..++..+
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~-- 205 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRV-- 205 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHH--
Confidence 45566777765443332 12346899999999999999988753222 1223567889999999996655444432
Q ss_pred ccHHHHHHHHHHHhcc--C---cccHHHHHhhhcccCchhhhhhhh-hhhcCCCC-cCHHHHHHHHHHcCCCcccchH-H
Q 021517 107 REKEVWESATDKLQRI--L---YPSILEVLKISYDSLDDKEKNIFL-DVACFFQG-EDVDLVMKFFNASGFYPEIGMS-V 178 (311)
Q Consensus 107 ~~~~~w~~~~~~l~~~--~---~~~i~~~l~~sy~~L~~~~k~cfl-~ls~fp~~-~~~~~l~~~w~a~g~~~~~~~~-~ 178 (311)
|... ...... . -......+...|..++++.+..+. ..+.+..+ +..+.+...........+..++ .
T Consensus 206 -----~~~a-~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~ 279 (305)
T TIGR00635 206 -----RDFA-QVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPY 279 (305)
T ss_pred -----HHHH-HHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHH
Confidence 1110 000000 0 011222356678889888877665 55666544 5566777666655555666677 6
Q ss_pred HhhcccceecCCCc
Q 021517 179 LVDKSLIAIDSHKK 192 (311)
Q Consensus 179 L~~~sl~~~~~~~~ 192 (311)
|++.+|+.....|.
T Consensus 280 Li~~~li~~~~~g~ 293 (305)
T TIGR00635 280 LLQIGFLQRTPRGR 293 (305)
T ss_pred HHHcCCcccCCchh
Confidence 99999998665443
No 23
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.09 E-value=0.0019 Score=63.55 Aligned_cols=197 Identities=14% Similarity=0.144 Sum_probs=119.8
Q ss_pred eEEEEEeCCCCHHH---HHHHHhcCCCCCCCcEEEEEeCchhHHHhcC---CCceEEcC----CCCHHHHHHHHHHhhcC
Q 021517 2 KVLIVFDDVTCFSQ---IESLIGSLDWLTPVSRIIITTRNKQVLRNWG---VRKIYEMK----ALEYHHAIRLFSRHAFK 71 (311)
Q Consensus 2 r~LlVLDdv~~~~~---~~~l~~~~~~~~~gs~IlvTTR~~~va~~~~---~~~~~~l~----~L~~~~a~~Lf~~~a~~ 71 (311)
+..+||||..-..+ -+.+...+....++-..|||||+.--..... .+...+++ .++.+|+-++|......
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l 209 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL 209 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC
Confidence 56899999874432 2222222333346788999999974322110 01122333 58999999999876521
Q ss_pred CCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccc-cHHHHHHHHHHHhccCcccHHH-HHhhhcccCchhhhhhhhhh
Q 021517 72 QNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHKR-EKEVWESATDKLQRILYPSILE-VLKISYDSLDDKEKNIFLDV 149 (311)
Q Consensus 72 ~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~-~~~~w~~~~~~l~~~~~~~i~~-~l~~sy~~L~~~~k~cfl~l 149 (311)
+--..-++.+.+...|.+-|+..++=.+++. +.+.-...+.- . ...+.. ...-=++.||++.+..++-+
T Consensus 210 -----~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG---~-~~~l~dYL~eeVld~Lp~~l~~FLl~~ 280 (894)
T COG2909 210 -----PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSG---A-ASHLSDYLVEEVLDRLPPELRDFLLQT 280 (894)
T ss_pred -----CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccc---h-HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1122457788999999999999999888843 33322221110 0 011111 11223678999999999999
Q ss_pred hcCCCCcCHHHHHHHHHHcCCCcccchHHHhhcccceec---CCCcEEeCHHHHHHHHHHHhhh
Q 021517 150 ACFFQGEDVDLVMKFFNASGFYPEIGMSVLVDKSLIAID---SHKKITMHDLLQELGREIVRQE 210 (311)
Q Consensus 150 s~fp~~~~~~~l~~~w~a~g~~~~~~~~~L~~~sl~~~~---~~~~~~mH~lv~~~~~~~~~~~ 210 (311)
|+++.-- ++|......++ .....+++|.+++|+-.. ..+.|+.|.++.+|.+.....+
T Consensus 281 svl~~f~--~eL~~~Ltg~~-ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 281 SVLSRFN--DELCNALTGEE-NGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred HhHHHhh--HHHHHHHhcCC-cHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 9885321 23333222211 122348999999988632 2779999999999998876654
No 24
>PF05729 NACHT: NACHT domain
Probab=97.06 E-value=0.0016 Score=52.14 Aligned_cols=69 Identities=20% Similarity=0.364 Sum_probs=48.3
Q ss_pred CeEEEEEeCCCCHHH---------HHHHHhc-CCC-CCCCcEEEEEeCchhH---HHhcCCCceEEcCCCCHHHHHHHHH
Q 021517 1 MKVLIVFDDVTCFSQ---------IESLIGS-LDW-LTPVSRIIITTRNKQV---LRNWGVRKIYEMKALEYHHAIRLFS 66 (311)
Q Consensus 1 kr~LlVLDdv~~~~~---------~~~l~~~-~~~-~~~gs~IlvTTR~~~v---a~~~~~~~~~~l~~L~~~~a~~Lf~ 66 (311)
+++++|+|++++... +..+... ++. ..++++++||||.... .........+++.+|++++..+++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 478999999986533 2222222 221 2468999999999876 3333444689999999999999987
Q ss_pred Hhh
Q 021517 67 RHA 69 (311)
Q Consensus 67 ~~a 69 (311)
++.
T Consensus 161 ~~f 163 (166)
T PF05729_consen 161 KYF 163 (166)
T ss_pred HHh
Confidence 654
No 25
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.02 E-value=8.5e-05 Score=66.81 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=55.1
Q ss_pred ccccCCCCCCCceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 247 KISYLQDPGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 247 ~~~lp~~~~~~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
...+|+.-++..|+-|.+..+.|+.+|..+ +|.+|-+||||.++++++|.+|+.|++|..|+++
T Consensus 218 i~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 218 IRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLS 283 (565)
T ss_pred cccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhccc
Confidence 346674444488888888888899999888 5999999999999999999999999999999875
No 26
>PRK06893 DNA replication initiation factor; Validated
Probab=97.02 E-value=0.0026 Score=54.35 Aligned_cols=95 Identities=14% Similarity=0.221 Sum_probs=61.4
Q ss_pred EEEEeCCCCH---HHHHH-HHhcCCCC-CCCcEEEE-EeCc---------hhHHHhcCCCceEEcCCCCHHHHHHHHHHh
Q 021517 4 LIVFDDVTCF---SQIES-LIGSLDWL-TPVSRIII-TTRN---------KQVLRNWGVRKIYEMKALEYHHAIRLFSRH 68 (311)
Q Consensus 4 LlVLDdv~~~---~~~~~-l~~~~~~~-~~gs~Ilv-TTR~---------~~va~~~~~~~~~~l~~L~~~~a~~Lf~~~ 68 (311)
+||+||+|.. ..|+. +...+... ..|+.+|| |+.. +++...++....+++++++.++.++++.+.
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~ 173 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRN 173 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHH
Confidence 7999999964 34552 22222211 23555655 4443 466666676779999999999999999999
Q ss_pred hcCCCCCCccHHHHHHHHHHHhCCCchHHHHH
Q 021517 69 AFKQNHPDVGYEELSCKVMKYAQGVPLALKVL 100 (311)
Q Consensus 69 a~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 100 (311)
++...-. --.++..-|++.+.|..-++..+
T Consensus 174 a~~~~l~--l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 174 AYQRGIE--LSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHcCCC--CCHHHHHHHHHhccCCHHHHHHH
Confidence 8654321 12356677788887766554433
No 27
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.98 E-value=0.00017 Score=68.53 Aligned_cols=61 Identities=10% Similarity=-0.043 Sum_probs=42.5
Q ss_pred ccccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCcccccc
Q 021517 247 KISYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTC 307 (311)
Q Consensus 247 ~~~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l 307 (311)
...+|+.+.. .+||-|+|+++.|++|.-.+ .-.+|++|+|+.+.++.||..+++|++|+.|
T Consensus 234 Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 234 LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKL 296 (1255)
T ss_pred CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHH
Confidence 3445555555 77777777777777776666 4667777777777777777777777777654
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.94 E-value=0.00082 Score=70.67 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=29.8
Q ss_pred ccCCCCCC-CceeEEeeeCCC-CCCCCCCCCCCCceEEEcCCC-CccccccccccCcccccccc
Q 021517 249 SYLQDPGF-AEVKYLHWYGYP-LKSLPSNLSAKKLVLVEVPDS-DIERLWHCVKVCISYYTCGI 309 (311)
Q Consensus 249 ~lp~~~~~-~~Lr~L~l~~~~-i~~lP~~i~L~~L~~L~L~~~-~i~~LP~~i~~L~~L~~l~i 309 (311)
.+|.++.. ++|++|+|+++. +..+|..-.+.+|++|+|++| .+.++|.+|++|++|++|++
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 34444444 555555555443 444443114555555555554 45555555555555555443
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.94 E-value=0.00042 Score=56.43 Aligned_cols=54 Identities=7% Similarity=0.054 Sum_probs=26.0
Q ss_pred CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCccccccccc-cCccccccccC
Q 021517 257 AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVK-VCISYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~~i~-~L~~L~~l~i~ 310 (311)
.+|+.|+|++|.|++++.--.|.+|++|+|+++.|+.++.++. .+++|++|.++
T Consensus 42 ~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 7899999999999999742289999999999999999987664 68899888764
No 30
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.91 E-value=0.00014 Score=71.54 Aligned_cols=63 Identities=11% Similarity=0.159 Sum_probs=48.5
Q ss_pred cccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 248 ISYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 248 ~~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
...|..+.. .+|+.|+++.|-|.+.|.++ ++.+|+||+|.++.+..+|.++..|++|+.|+++
T Consensus 58 ~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 58 SSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred ccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccc
Confidence 355666666 78888888888888888777 7888888888888888888888888888877764
No 31
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.88 E-value=0.00029 Score=36.40 Aligned_cols=19 Identities=37% Similarity=0.695 Sum_probs=17.7
Q ss_pred ceeEEeeeCCCCCCCCCCC
Q 021517 258 EVKYLHWYGYPLKSLPSNL 276 (311)
Q Consensus 258 ~Lr~L~l~~~~i~~lP~~i 276 (311)
+|++||+++|+++++|+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp TESEEEETSSEESEEGTTT
T ss_pred CccEEECCCCcCEeCChhh
Confidence 5899999999999999987
No 32
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.81 E-value=0.0079 Score=50.88 Aligned_cols=97 Identities=23% Similarity=0.240 Sum_probs=53.1
Q ss_pred CeEEEEEeCCCCHH-----------HHHHHHhcCCCCCCCcEEEEEeCchhHHHh--------cCCCceEEcCCCCHHHH
Q 021517 1 MKVLIVFDDVTCFS-----------QIESLIGSLDWLTPVSRIIITTRNKQVLRN--------WGVRKIYEMKALEYHHA 61 (311)
Q Consensus 1 kr~LlVLDdv~~~~-----------~~~~l~~~~~~~~~gs~IlvTTR~~~va~~--------~~~~~~~~l~~L~~~~a 61 (311)
++.+||+||+.... .+..+........+. .+|+++.+..+... .+....+.+++++.+++
T Consensus 118 ~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~ 196 (234)
T PF01637_consen 118 KKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV-SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEA 196 (234)
T ss_dssp CCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE-EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHH
T ss_pred CcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc-eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHH
Confidence 35899999997655 123333332223333 45555555555443 12334599999999999
Q ss_pred HHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHH
Q 021517 62 IRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKV 99 (311)
Q Consensus 62 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 99 (311)
++++...+-....- +.-.+...+|...+||.|..|..
T Consensus 197 ~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 197 REFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 99999875332111 12345679999999999987753
No 33
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.67 E-value=0.063 Score=46.77 Aligned_cols=103 Identities=13% Similarity=0.157 Sum_probs=66.2
Q ss_pred CeEEEEEeCCCCHH--HHHHHHhcC---CCCCCCcEEEEEeCchhHHHhcC----------CCceEEcCCCCHHHHHHHH
Q 021517 1 MKVLIVFDDVTCFS--QIESLIGSL---DWLTPVSRIIITTRNKQVLRNWG----------VRKIYEMKALEYHHAIRLF 65 (311)
Q Consensus 1 kr~LlVLDdv~~~~--~~~~l~~~~---~~~~~gs~IlvTTR~~~va~~~~----------~~~~~~l~~L~~~~a~~Lf 65 (311)
++.+||+||++... .++.+.... ........|++|.... ...... ....+++++++.+|..+++
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l 201 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYI 201 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHH
Confidence 46799999998753 455544221 1112233455665433 221111 1246789999999999998
Q ss_pred HHhhcCCCC--CCccHHHHHHHHHHHhCCCchHHHHHHHHh
Q 021517 66 SRHAFKQNH--PDVGYEELSCKVMKYAQGVPLALKVLGCFL 104 (311)
Q Consensus 66 ~~~a~~~~~--~~~~~~~~~~~i~~~c~glPLai~~~~~~L 104 (311)
...+...+. ...-..+..+.|.+.|+|.|..|..++..+
T Consensus 202 ~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 202 EHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 877643221 122234788999999999999999988876
No 34
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.46 E-value=0.0015 Score=31.37 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=6.4
Q ss_pred CceEEEcCCCCccccc
Q 021517 280 KLVLVEVPDSDIERLW 295 (311)
Q Consensus 280 ~L~~L~L~~~~i~~LP 295 (311)
+|++|+|++|++++||
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555554
No 35
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.34 E-value=0.0018 Score=31.08 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=11.9
Q ss_pred CceeEEeeeCCCCCCCC
Q 021517 257 AEVKYLHWYGYPLKSLP 273 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP 273 (311)
++||+|++++|++++||
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999999988
No 36
>PLN03150 hypothetical protein; Provisional
Probab=96.32 E-value=0.0029 Score=62.21 Aligned_cols=53 Identities=11% Similarity=0.128 Sum_probs=48.6
Q ss_pred ceeEEeeeCCCCC-CCCCCC-CCCCceEEEcCCCCcc-ccccccccCccccccccC
Q 021517 258 EVKYLHWYGYPLK-SLPSNL-SAKKLVLVEVPDSDIE-RLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 258 ~Lr~L~l~~~~i~-~lP~~i-~L~~L~~L~L~~~~i~-~LP~~i~~L~~L~~l~i~ 310 (311)
.+..|+|+++.+. .+|.+| +|.+|++|+|++|++. .+|.++++|.+|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs 474 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS 474 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECC
Confidence 4889999999976 889999 8999999999999987 899999999999999885
No 37
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.18 E-value=0.0021 Score=64.00 Aligned_cols=52 Identities=27% Similarity=0.181 Sum_probs=41.4
Q ss_pred CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 257 AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
.+|++|++++|.+.++|... .+|++|+|++|+|+.||.++++|.+|+.+++.
T Consensus 402 s~L~~LdLS~N~LssIP~l~--~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 402 SELKELMVSGNRLTSLPMLP--SGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 453 (788)
T ss_pred cCCCEEEccCCcCCCCCcch--hhhhhhhhccCcccccChHHhhccCCCeEECC
Confidence 46777777777777777543 46788999999999999999999999988774
No 38
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.16 E-value=0.0016 Score=64.43 Aligned_cols=54 Identities=15% Similarity=0.141 Sum_probs=44.9
Q ss_pred CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccc--cccccCccccccccCC
Q 021517 257 AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLW--HCVKVCISYYTCGIFQ 311 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP--~~i~~L~~L~~l~i~q 311 (311)
++|++||+++|+++.+ ..| +|+|||+|.+++=.+..-+ ..+-+|++|++|||++
T Consensus 173 pNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 173 PNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred CccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 8999999999999988 677 7999999999886666533 3577899999999875
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.85 E-value=0.0034 Score=54.74 Aligned_cols=63 Identities=6% Similarity=-0.023 Sum_probs=39.5
Q ss_pred cccCCCCCC-CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 248 ISYLQDPGF-AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 248 ~~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
..+.++++. +.+|+|+++.|+|..+-+--.|.+|+.|||+++.+.++-.-=.+|-|.++|.+.
T Consensus 297 ~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 297 TQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 355566666 777888888877776665226777777777777665554333444455555443
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.78 E-value=0.0031 Score=58.37 Aligned_cols=60 Identities=18% Similarity=0.157 Sum_probs=29.8
Q ss_pred ccCCCCCC-C-ceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccc
Q 021517 249 SYLQDPGF-A-EVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCG 308 (311)
Q Consensus 249 ~lp~~~~~-~-~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~ 308 (311)
.+|..+.. . +|+.|+++++.+..+|..+ .+.+|+.|+++.|.+.++|...+++.+|+.+.
T Consensus 130 ~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 130 DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 34444444 2 4555555555555555444 45555555555555555555444444444443
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.75 E-value=0.0018 Score=50.13 Aligned_cols=50 Identities=10% Similarity=0.069 Sum_probs=25.0
Q ss_pred ceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCcccccc
Q 021517 258 EVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTC 307 (311)
Q Consensus 258 ~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l 307 (311)
.+..|+|.++.|..+|..+ .+.-|+.|+++.+.+...|.-|-.|++|-.|
T Consensus 78 t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 4445555555555555554 4555555555555555555544444444433
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.74 E-value=0.0022 Score=60.39 Aligned_cols=64 Identities=17% Similarity=0.080 Sum_probs=50.1
Q ss_pred ccccCCCCCCCceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 247 KISYLQDPGFAEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 247 ~~~lp~~~~~~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
+..+|..++.-=|++|-+++++++.+|..| .+.+|..||.+.|.|..||..++.|.+|+.|.++
T Consensus 133 lS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 133 LSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred hhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHh
Confidence 346777777766788888888888888888 5777888888888888888888888888777653
No 43
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.66 E-value=0.011 Score=59.02 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=37.3
Q ss_pred ccCCCCCCCceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 249 SYLQDPGFAEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~~~~~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
.+|..+. .+|++|++++|.++++|..+ ..+|+.|+|++|++..+|.++. .+|++|+++
T Consensus 213 sLP~~l~-~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 213 SLPENLQ-GNIKTLYANSNQLTSIPATL-PDTIQEMELSINRITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCChhhc-cCCCEEECCCCccccCChhh-hccccEEECcCCccCcCChhHh--CCCCEEECc
Confidence 4444332 46777777777777777655 1257777787777777777664 366666653
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.50 E-value=0.0045 Score=54.00 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=49.4
Q ss_pred CceeEEeeeCCCCCCCCCCCC-CCCceEEEcCCCCccccccccccCccccccccC
Q 021517 257 AEVKYLHWYGYPLKSLPSNLS-AKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i~-L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
..|..|||++|.|+.+-+|++ +..++.|+|+++.|...-+ +..|.+|++|+++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS 337 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLS 337 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecc
Confidence 789999999999999999996 7899999999999999876 8999999999886
No 45
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.38 E-value=0.012 Score=58.73 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=21.6
Q ss_pred ceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCcccccccc
Q 021517 258 EVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCV 298 (311)
Q Consensus 258 ~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~~i 298 (311)
.|++|++++|++..+|..+. .+|++|+|++|+++.+|..+
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l~-~sL~~L~Ls~N~Lt~LP~~l 302 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENLP-EELRYLSVYDNSIRTLPAHL 302 (754)
T ss_pred CCCEEECcCCccCccccccC-CCCcEEECCCCccccCcccc
Confidence 45555555555555555441 24556666665555555443
No 46
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.36 E-value=0.12 Score=52.61 Aligned_cols=202 Identities=13% Similarity=0.156 Sum_probs=121.7
Q ss_pred CeEEEEEeCCCCHHH-----HHHHHhcCCCCC-CCcEEEEEeCchhHHHh----cCCCceEEcCCCCHHHHHHHHHHhhc
Q 021517 1 MKVLIVFDDVTCFSQ-----IESLIGSLDWLT-PVSRIIITTRNKQVLRN----WGVRKIYEMKALEYHHAIRLFSRHAF 70 (311)
Q Consensus 1 kr~LlVLDdv~~~~~-----~~~l~~~~~~~~-~gs~IlvTTR~~~va~~----~~~~~~~~l~~L~~~~a~~Lf~~~a~ 70 (311)
|+..+|+||+.-.+. .+.+......+. ....|..+......... -.....+.|.||+..+.-.+......
T Consensus 154 ~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~ 233 (849)
T COG3899 154 HPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLG 233 (849)
T ss_pred CCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhC
Confidence 578999999964432 333333221000 11133333333222111 12336899999999999999988773
Q ss_pred CCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccc-------cHHHHHHHHHHHhccC-cccHHHHHhhhcccCchhh
Q 021517 71 KQNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHKR-------EKEVWESATDKLQRIL-YPSILEVLKISYDSLDDKE 142 (311)
Q Consensus 71 ~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~-------~~~~w~~~~~~l~~~~-~~~i~~~l~~sy~~L~~~~ 142 (311)
... ....+....|+++-+|.|+-+..+-..+... +...|..-..++.... .+++...+..-.+.||...
T Consensus 234 ~~~---~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t 310 (849)
T COG3899 234 CTK---LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTT 310 (849)
T ss_pred Ccc---cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHH
Confidence 322 2334678899999999999999888888652 3444544333333222 1335666888899999999
Q ss_pred hhhhhhhhcCCCCcCHHHHHHHHHHcCCCcccchHHHhhcccceecC--------CCc--E-EeCHHHHHHHHH
Q 021517 143 KNIFLDVACFFQGEDVDLVMKFFNASGFYPEIGMSVLVDKSLIAIDS--------HKK--I-TMHDLLQELGRE 205 (311)
Q Consensus 143 k~cfl~ls~fp~~~~~~~l~~~w~a~g~~~~~~~~~L~~~sl~~~~~--------~~~--~-~mH~lv~~~~~~ 205 (311)
+..+-..|++...|+.+.|..++...+...-..+-.....+++.+.. ... | -.|+.+++.|-.
T Consensus 311 ~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~ 384 (849)
T COG3899 311 REVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYN 384 (849)
T ss_pred HHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhc
Confidence 99999999998888877776666543322222233333444444321 111 1 467777777654
No 47
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.33 E-value=0.01 Score=31.81 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=17.7
Q ss_pred CCCceEEEcCCCCccccccccc
Q 021517 278 AKKLVLVEVPDSDIERLWHCVK 299 (311)
Q Consensus 278 L~~L~~L~L~~~~i~~LP~~i~ 299 (311)
|.+|++|+|.+|.|+.+|.++.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 5678889998888988887653
No 48
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.33 E-value=0.01 Score=31.81 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=17.7
Q ss_pred CCCceEEEcCCCCccccccccc
Q 021517 278 AKKLVLVEVPDSDIERLWHCVK 299 (311)
Q Consensus 278 L~~L~~L~L~~~~i~~LP~~i~ 299 (311)
|.+|++|+|.+|.|+.+|.++.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 5678889998888988887653
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.26 E-value=0.0047 Score=58.25 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=56.6
Q ss_pred cccCCCCCC-CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCccccccccccCcccccccc
Q 021517 248 ISYLQDPGF-AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKVCISYYTCGI 309 (311)
Q Consensus 248 ~~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i 309 (311)
-.+|..++. ..|-||||+.+.+..+|..++..-|+.|-+++++++.||.+|+-+..|.+|+.
T Consensus 111 r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 111 RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred eecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhh
Confidence 367888888 99999999999999999999888899999999999999999998888888764
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.25 E-value=0.012 Score=54.33 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=50.7
Q ss_pred CceeEEeeeCCCCCCCCCCCC-CC-CceEEEcCCCCccccccccccCccccccccCC
Q 021517 257 AEVKYLHWYGYPLKSLPSNLS-AK-KLVLVEVPDSDIERLWHCVKVCISYYTCGIFQ 311 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i~-L~-~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~q 311 (311)
..+..|++.++.+.++|..+. +. +|+.|+++++.+..+|..++.+++|+.|++.+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC
Confidence 679999999999999999995 64 99999999999999999999999999998753
No 51
>PRK09087 hypothetical protein; Validated
Probab=95.22 E-value=0.44 Score=40.59 Aligned_cols=92 Identities=9% Similarity=0.087 Sum_probs=59.4
Q ss_pred EEEEeCCCC----HHHHHHHHhcCCCCCCCcEEEEEeCc---------hhHHHhcCCCceEEcCCCCHHHHHHHHHHhhc
Q 021517 4 LIVFDDVTC----FSQIESLIGSLDWLTPVSRIIITTRN---------KQVLRNWGVRKIYEMKALEYHHAIRLFSRHAF 70 (311)
Q Consensus 4 LlVLDdv~~----~~~~~~l~~~~~~~~~gs~IlvTTR~---------~~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~ 70 (311)
+|++||+.. .+.+-.+..... ..|..||+||+. .+....+....++++++++.++-.+++.+.+-
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 688999953 233323332222 246679999873 44555556667999999999999999998883
Q ss_pred CCCCCCccHHHHHHHHHHHhCCCchHHHH
Q 021517 71 KQNHPDVGYEELSCKVMKYAQGVPLALKV 99 (311)
Q Consensus 71 ~~~~~~~~~~~~~~~i~~~c~glPLai~~ 99 (311)
...- .--+++..-|++.+.|..-++..
T Consensus 168 ~~~~--~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 168 DRQL--YVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HcCC--CCCHHHHHHHHHHhhhhHHHHHH
Confidence 3221 12235667777777776665553
No 52
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.17 E-value=0.42 Score=43.81 Aligned_cols=93 Identities=11% Similarity=0.109 Sum_probs=61.0
Q ss_pred eEEEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEEEeCch-hHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~-~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+||+...+ ....++..+..-..++.+|++|.+. .+...+ .....+.+.+++.++..+++...... ..
T Consensus 142 ~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~----~~ 217 (365)
T PRK07471 142 WRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD----LP 217 (365)
T ss_pred CEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc----CC
Confidence 3578999998553 4666666654434566666666665 333332 33468999999999999999875411 11
Q ss_pred cHHHHHHHHHHHhCCCchHHHHH
Q 021517 78 GYEELSCKVMKYAQGVPLALKVL 100 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai~~~ 100 (311)
......++..++|.|.....+
T Consensus 218 --~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 218 --DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred --HHHHHHHHHHcCCCHHHHHHH
Confidence 122267899999999865544
No 53
>PF13173 AAA_14: AAA domain
Probab=94.80 E-value=0.042 Score=42.22 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=46.4
Q ss_pred eEEEEEeCCCCHHHHHHHHhcCCCCCCCcEEEEEeCchhHHHhc------CCCceEEcCCCCHHHH
Q 021517 2 KVLIVFDDVTCFSQIESLIGSLDWLTPVSRIIITTRNKQVLRNW------GVRKIYEMKALEYHHA 61 (311)
Q Consensus 2 r~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~va~~~------~~~~~~~l~~L~~~~a 61 (311)
+.+|++|++.....|......+-+..+..+|++|+.+......- |....++|.||+..|-
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 46899999999999888887776656678999999988776431 2224689999988763
No 54
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.76 E-value=0.81 Score=42.28 Aligned_cols=179 Identities=12% Similarity=0.063 Sum_probs=98.2
Q ss_pred eEEEEEeCCCCHH------HHHHHHhcCCCCCCCc--EEEEEeCchhHHHhcC-------CCceEEcCCCCHHHHHHHHH
Q 021517 2 KVLIVFDDVTCFS------QIESLIGSLDWLTPVS--RIIITTRNKQVLRNWG-------VRKIYEMKALEYHHAIRLFS 66 (311)
Q Consensus 2 r~LlVLDdv~~~~------~~~~l~~~~~~~~~gs--~IlvTTR~~~va~~~~-------~~~~~~l~~L~~~~a~~Lf~ 66 (311)
..+||||+++... .+..+...... ..++ .+|.++....+..... ....+.+++++.++..+++.
T Consensus 139 ~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~ 217 (394)
T PRK00411 139 VLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILK 217 (394)
T ss_pred EEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHH
Confidence 4789999998753 34444433221 1233 3566666554433221 12467999999999999998
Q ss_pred HhhcC---CCCC-CccHHHHHHHHHHHhCCCchHHHHHHHHh--c---cc---cHHHHHHHHHHHhccCcccHHHHHhhh
Q 021517 67 RHAFK---QNHP-DVGYEELSCKVMKYAQGVPLALKVLGCFL--H---KR---EKEVWESATDKLQRILYPSILEVLKIS 134 (311)
Q Consensus 67 ~~a~~---~~~~-~~~~~~~~~~i~~~c~glPLai~~~~~~L--~---~~---~~~~w~~~~~~l~~~~~~~i~~~l~~s 134 (311)
..+-. .... ++.+..+++......|..+.|+..+-.+. + +. +.+....+.+... .....-.
T Consensus 218 ~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~ 290 (394)
T PRK00411 218 DRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEV 290 (394)
T ss_pred HHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHH
Confidence 87622 1122 22233344444343566777777664432 1 11 4556665555441 2233446
Q ss_pred cccCchhhhhhhhhhhcC-C---CCcCHHHHHHH----HHHcCCCc------ccchHHHhhcccceec
Q 021517 135 YDSLDDKEKNIFLDVACF-F---QGEDVDLVMKF----FNASGFYP------EIGMSVLVDKSLIAID 188 (311)
Q Consensus 135 y~~L~~~~k~cfl~ls~f-p---~~~~~~~l~~~----w~a~g~~~------~~~~~~L~~~sl~~~~ 188 (311)
+..||.+.|..+..++.. . .......+... -...|..+ -.+++.|.+.|++...
T Consensus 291 ~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 291 LRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 788999988766555432 2 22333333321 11223322 2468899999999864
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.75 E-value=0.0058 Score=60.47 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=48.0
Q ss_pred ccCCCCCC--CceeEEeeeCCCC--CCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 249 SYLQDPGF--AEVKYLHWYGYPL--KSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~~~~--~~Lr~L~l~~~~i--~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
..|..++. |.||.|.+.|-.+ ..+-.-. ++.+|..||+++|+|+.| .+|++|+|||+|-++
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMR 203 (699)
T ss_pred cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhcc
Confidence 34555666 8999999998764 2333333 699999999999999999 899999999988553
No 56
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.71 E-value=0.035 Score=55.55 Aligned_cols=19 Identities=37% Similarity=0.445 Sum_probs=12.3
Q ss_pred CceeEEeeeCCCCCCCCCC
Q 021517 257 AEVKYLHWYGYPLKSLPSN 275 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~ 275 (311)
++|++|+|++|.++++|..
T Consensus 242 ~~Lk~LdLs~N~LtsLP~l 260 (788)
T PRK15387 242 PELRTLEVSGNQLTSLPVL 260 (788)
T ss_pred CCCcEEEecCCccCcccCc
Confidence 5666777777666666643
No 57
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=94.45 E-value=0.0068 Score=57.47 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=49.1
Q ss_pred CCCCCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccc-cccCccccccccC
Q 021517 251 LQDPGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGIF 310 (311)
Q Consensus 251 p~~~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i~ 310 (311)
++.-.+ ..|++|+|+.|.|++||++- .|..|+.|+|+++.|..|-++ ..-|.+|++|+++
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 344455 89999999999999999764 799999999999999999875 4567788888775
No 58
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=94.33 E-value=0.038 Score=52.64 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=41.4
Q ss_pred CceeEEeeeCCCCCCCCCC-C-CCCCceEEEcCCCCcccccccccc-Ccccccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERLWHCVKV-CISYYTCGI 309 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~-i-~L~~L~~L~L~~~~i~~LP~~i~~-L~~L~~l~i 309 (311)
.++++|+|.+|.|+.+-.. + +|..|.+|.|+.+.|+.||.-+-+ |.+|+.|++
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 7888888888888877654 4 688888888888888888865544 888887765
No 59
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=94.32 E-value=0.033 Score=27.79 Aligned_cols=20 Identities=45% Similarity=0.825 Sum_probs=17.8
Q ss_pred CceEEEcCCCCccccccccc
Q 021517 280 KLVLVEVPDSDIERLWHCVK 299 (311)
Q Consensus 280 ~L~~L~L~~~~i~~LP~~i~ 299 (311)
+|..|+++++++++||.+++
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58899999999999999863
No 60
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=94.25 E-value=0.47 Score=42.49 Aligned_cols=89 Identities=13% Similarity=0.178 Sum_probs=61.1
Q ss_pred EEEEeCC--CCHHHHHHHHhcCCCCCCCcEEEEEeCchhHH-Hhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCccH
Q 021517 4 LIVFDDV--TCFSQIESLIGSLDWLTPVSRIIITTRNKQVL-RNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGY 79 (311)
Q Consensus 4 LlVLDdv--~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~va-~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~ 79 (311)
++|+||+ .+.+.++.++..+.+...++.+|++|.+.+.. ..+ .-...+.+.++++++....+.+...+ ..
T Consensus 96 v~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~------~~ 169 (313)
T PRK05564 96 VIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND------IK 169 (313)
T ss_pred EEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC------CC
Confidence 4555555 46667999998888777888888888765432 222 23468999999999998877654311 11
Q ss_pred HHHHHHHHHHhCCCchHHH
Q 021517 80 EELSCKVMKYAQGVPLALK 98 (311)
Q Consensus 80 ~~~~~~i~~~c~glPLai~ 98 (311)
.+.+..++..++|.|.-+.
T Consensus 170 ~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 170 EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHHHHHHHHHcCCCHHHHH
Confidence 2446788999999886544
No 61
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.17 E-value=0.29 Score=41.36 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=57.0
Q ss_pred EEEEeCCCCHH---HH-HHHHhcCCC-CCCCcEEEEEeCchh---------HHHhcCCCceEEcCCCCHHHHHHHHHHhh
Q 021517 4 LIVFDDVTCFS---QI-ESLIGSLDW-LTPVSRIIITTRNKQ---------VLRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (311)
Q Consensus 4 LlVLDdv~~~~---~~-~~l~~~~~~-~~~gs~IlvTTR~~~---------va~~~~~~~~~~l~~L~~~~a~~Lf~~~a 69 (311)
+||+||++... .| +.+...+.. ...+.++|+||+... +...+.....+++++++.++-..++...+
T Consensus 93 lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 93 LVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHH
Confidence 78999998653 22 233332221 123347889887532 22233334578999999999999987755
Q ss_pred cCCCCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 021517 70 FKQNHPDVGYEELSCKVMKYAQGVPLALKVLG 101 (311)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 101 (311)
-...- .--.+..+.+++.+.|.|..+..+-
T Consensus 173 ~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 173 ARRGL--QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHcCC--CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 22111 1122455667777888877666554
No 62
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.08 E-value=0.38 Score=39.48 Aligned_cols=86 Identities=16% Similarity=0.270 Sum_probs=59.6
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCch-hHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~-~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+||+... +.++.+...+....+.+.+|++|++. .+...+ .....+++.+++.++..+.+.+. + .+
T Consensus 97 ~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i~- 170 (188)
T TIGR00678 97 RRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---IS- 170 (188)
T ss_pred eEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---CC-
Confidence 447899998754 34677777766555566677777654 332222 22358999999999998888776 2 11
Q ss_pred cHHHHHHHHHHHhCCCch
Q 021517 78 GYEELSCKVMKYAQGVPL 95 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPL 95 (311)
.+.+..|++.++|.|.
T Consensus 171 --~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 171 --EEAAELLLALAGGSPG 186 (188)
T ss_pred --HHHHHHHHHHcCCCcc
Confidence 3568899999999885
No 63
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.05 E-value=0.03 Score=52.31 Aligned_cols=54 Identities=9% Similarity=-0.044 Sum_probs=32.5
Q ss_pred CCC-CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCccccccccccCccccccc
Q 021517 254 PGF-AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKVCISYYTCG 308 (311)
Q Consensus 254 ~~~-~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~ 308 (311)
+.. .+|++|+++++.|.++...-+|.+|+.|++.+|.|..++. ...|.+|+.++
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~ 168 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLD 168 (414)
T ss_pred hhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-Cccchhhhccc
Confidence 444 6677777777776666543356667777777766666653 44455555444
No 64
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=93.92 E-value=0.018 Score=51.30 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=45.3
Q ss_pred CCCCCC-CceeEEeeeCCCCC-----CCCCCC-CCCCceEEEcCCCCcc-----ccccccccCccccccccC
Q 021517 251 LQDPGF-AEVKYLHWYGYPLK-----SLPSNL-SAKKLVLVEVPDSDIE-----RLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 251 p~~~~~-~~Lr~L~l~~~~i~-----~lP~~i-~L~~L~~L~L~~~~i~-----~LP~~i~~L~~L~~l~i~ 310 (311)
+..+.. .+|++|++++|.+. .++..+ .+.+|++|+|++|.+. .++..+.++++|++|+++
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecC
Confidence 334444 78999999999876 344445 5679999999998764 566677888899999876
No 65
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=93.61 E-value=0.023 Score=50.56 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=38.6
Q ss_pred CceeEEeeeCCCCC-----CCCCCC-CCCCceEEEcCCCCccc-----cccccc-cCccccccccC
Q 021517 257 AEVKYLHWYGYPLK-----SLPSNL-SAKKLVLVEVPDSDIER-----LWHCVK-VCISYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~-----~lP~~i-~L~~L~~L~L~~~~i~~-----LP~~i~-~L~~L~~l~i~ 310 (311)
.+|++|++++|.+. .++..+ ++.+|++|++++|.+.. +...+. +..+|+++++.
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence 79999999999874 455566 68999999999998774 222221 24677777653
No 66
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.18 E-value=0.028 Score=54.82 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=47.0
Q ss_pred CCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 253 DPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 253 ~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
.+.. ++|+-|||+.|.+..+|.-= .=.+|+.|+||+|.+++|- +|.+|++|++|+++
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~LDls 262 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGLDLS 262 (1096)
T ss_pred HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHHhhhhhhccchh
Confidence 3444 88999999999999998654 3345999999999999986 69999999999874
No 67
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.12 E-value=0.96 Score=42.26 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=61.8
Q ss_pred CeEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEE--EeCchh--HHHh-cCCCceEEcCCCCHHHHHHHHHHhhcCCC
Q 021517 1 MKVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIII--TTRNKQ--VLRN-WGVRKIYEMKALEYHHAIRLFSRHAFKQN 73 (311)
Q Consensus 1 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Ilv--TTR~~~--va~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 73 (311)
++.+|++|+++.. .+.+.+...+. .|..++| ||.+.. +... .+-...+.+.+++.++...++.+.+....
T Consensus 92 ~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~ 168 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKE 168 (413)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhh
Confidence 3578999999865 45666766654 3444444 344432 1111 12236899999999999999988653211
Q ss_pred CCC-ccHHHHHHHHHHHhCCCchHHHHHHH
Q 021517 74 HPD-VGYEELSCKVMKYAQGVPLALKVLGC 102 (311)
Q Consensus 74 ~~~-~~~~~~~~~i~~~c~glPLai~~~~~ 102 (311)
... .-..+....|++.|+|.|..+..+..
T Consensus 169 ~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 169 RGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred cCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 111 22346677889999999876654443
No 68
>PRK08727 hypothetical protein; Validated
Probab=93.04 E-value=0.67 Score=39.61 Aligned_cols=93 Identities=11% Similarity=0.055 Sum_probs=56.3
Q ss_pred EEEEEeCCCCHH---HHH-HHHhcCCC-CCCCcEEEEEeCch---------hHHHhcCCCceEEcCCCCHHHHHHHHHHh
Q 021517 3 VLIVFDDVTCFS---QIE-SLIGSLDW-LTPVSRIIITTRNK---------QVLRNWGVRKIYEMKALEYHHAIRLFSRH 68 (311)
Q Consensus 3 ~LlVLDdv~~~~---~~~-~l~~~~~~-~~~gs~IlvTTR~~---------~va~~~~~~~~~~l~~L~~~~a~~Lf~~~ 68 (311)
-+||+||+.... .|. .+...+.. ...|..||+||+.. ++...+.....+++++++.++-.+++.+.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 379999997432 233 22222211 12456799999852 22233334568999999999999999987
Q ss_pred hcCCCCCCccHHHHHHHHHHHhCCCchHH
Q 021517 69 AFKQNHPDVGYEELSCKVMKYAQGVPLAL 97 (311)
Q Consensus 69 a~~~~~~~~~~~~~~~~i~~~c~glPLai 97 (311)
+....- .-..+...-|++.++|-.-++
T Consensus 175 a~~~~l--~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGL--ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCC--CCCHHHHHHHHHhCCCCHHHH
Confidence 743221 122356667777777655443
No 69
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.53 E-value=0.89 Score=41.47 Aligned_cols=95 Identities=12% Similarity=0.159 Sum_probs=60.8
Q ss_pred eEEEEEeCCCCHH--HHHHHHhcCCCCCCCcE-EEEEeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCFS--QIESLIGSLDWLTPVSR-IIITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~-IlvTTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|++.... ..+.++..+.....++. |++|++...+...+ +-...+.+.+++.++..+.+...... ..
T Consensus 142 ~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~--- 217 (351)
T PRK09112 142 WRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG--- 217 (351)
T ss_pred ceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC---
Confidence 3579999998654 35566655543334444 45555544443333 23368999999999999999874311 11
Q ss_pred cHHHHHHHHHHHhCCCchHHHHH
Q 021517 78 GYEELSCKVMKYAQGVPLALKVL 100 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai~~~ 100 (311)
-..+....+++.++|.|.....+
T Consensus 218 ~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 218 SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11345678999999999865543
No 70
>PF14516 AAA_35: AAA-like domain
Probab=92.18 E-value=5.2 Score=36.14 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=42.9
Q ss_pred CceEEcCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccc
Q 021517 48 RKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHKR 107 (311)
Q Consensus 48 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~ 107 (311)
...+.|++++.+|...|...+-.. .. ....++|...+||+|.-+..++..+...
T Consensus 193 g~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 193 GQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred ccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 357899999999999998876421 11 1238899999999999999999999764
No 71
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=92.09 E-value=0.54 Score=43.68 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=50.4
Q ss_pred CeEEEEEeCCCCHHHHHHHHhcCCCCCCCcEEEEEeCchhHHHhc------CCCceEEcCCCCHHHHHHH
Q 021517 1 MKVLIVFDDVTCFSQIESLIGSLDWLTPVSRIIITTRNKQVLRNW------GVRKIYEMKALEYHHAIRL 64 (311)
Q Consensus 1 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~va~~~------~~~~~~~l~~L~~~~a~~L 64 (311)
++..|+||.|.....|+.....+.+.++. +|++|+-+......- |-...+++-|||..|-..+
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 46789999999999999998888776666 899999887664432 3346889999999998765
No 72
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.06 E-value=1.1 Score=38.26 Aligned_cols=93 Identities=16% Similarity=0.206 Sum_probs=56.5
Q ss_pred EEEEeCCCCH---HHHHHHH-hcCCCC-CCC-cEEEEEeCch---------hHHHhcCCCceEEcCCCCHHHHHHHHHHh
Q 021517 4 LIVFDDVTCF---SQIESLI-GSLDWL-TPV-SRIIITTRNK---------QVLRNWGVRKIYEMKALEYHHAIRLFSRH 68 (311)
Q Consensus 4 LlVLDdv~~~---~~~~~l~-~~~~~~-~~g-s~IlvTTR~~---------~va~~~~~~~~~~l~~L~~~~a~~Lf~~~ 68 (311)
+|++||+... ..|+... ..+... ..| .++|+||+.. ++...+....++++++++.++-.+++.++
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~ 179 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR 179 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHH
Confidence 7899999754 3343222 111110 123 3799999754 33444555679999999999999998876
Q ss_pred hcCCCCCCccHHHHHHHHHHHhCCCchHHH
Q 021517 69 AFKQNHPDVGYEELSCKVMKYAQGVPLALK 98 (311)
Q Consensus 69 a~~~~~~~~~~~~~~~~i~~~c~glPLai~ 98 (311)
+-..+ -.--+++..-|++.+.|..-++.
T Consensus 180 a~~~~--~~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 180 ARLRG--FELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred HHHcC--CCCCHHHHHHHHHhhcCCHHHHH
Confidence 63322 11223566667777776554443
No 73
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.86 E-value=0.19 Score=46.57 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=39.5
Q ss_pred ccccCCCCCC-CceeEEeeeCCC-CCCCCCCCCCCCceEEEcCCC-CccccccccccCc
Q 021517 247 KISYLQDPGF-AEVKYLHWYGYP-LKSLPSNLSAKKLVLVEVPDS-DIERLWHCVKVCI 302 (311)
Q Consensus 247 ~~~lp~~~~~-~~Lr~L~l~~~~-i~~lP~~i~L~~L~~L~L~~~-~i~~LP~~i~~L~ 302 (311)
...+| .. .+|+.|.+++|. +..+|..+ ..+|++|++++| ++..||.++..|.
T Consensus 64 L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~sLe~L~ 118 (426)
T PRK15386 64 IESLP---VLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPESVRSLE 118 (426)
T ss_pred CcccC---CCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccccceEE
Confidence 44555 23 679999999874 78888766 357899999998 8999998876554
No 74
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.85 E-value=0.12 Score=44.28 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=28.4
Q ss_pred CceeEEeeeCC--CC-CCCCCCC-CCCCceEEEcCCCCccccccc---cccCccccccccC
Q 021517 257 AEVKYLHWYGY--PL-KSLPSNL-SAKKLVLVEVPDSDIERLWHC---VKVCISYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~--~i-~~lP~~i-~L~~L~~L~L~~~~i~~LP~~---i~~L~~L~~l~i~ 310 (311)
++|++|+++.| .+ ..++-.. ++.+|++|+|++++|+- +++ ..+|.||..|++|
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELENLKSLDLF 124 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhcchhhhhcc
Confidence 56666666666 32 3444444 45666777776665554 332 3344445455443
No 75
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=91.69 E-value=0.022 Score=51.56 Aligned_cols=61 Identities=10% Similarity=-0.049 Sum_probs=44.8
Q ss_pred ccccCCCCCC--CceeEEeeeCCCCCCCCCC-C-CCCCceEEEcCC-CCccccccc-cccCcccccc
Q 021517 247 KISYLQDPGF--AEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPD-SDIERLWHC-VKVCISYYTC 307 (311)
Q Consensus 247 ~~~lp~~~~~--~~Lr~L~l~~~~i~~lP~~-i-~L~~L~~L~L~~-~~i~~LP~~-i~~L~~L~~l 307 (311)
...+|+..+. +.||.|||++|.|+.+-+. + .|..|-.|-+-+ ++|++||++ .++|..||-|
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 4567766544 9999999999999877654 5 688776655545 799999975 4667776654
No 76
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.38 E-value=2.8 Score=40.24 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=62.5
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeC-chhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTR-NKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR-~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|+++.. ..++.+...+......+.+|++|. ...+...+ .....+++.+++.++....+.+.+-..+...
T Consensus 117 ~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i- 195 (504)
T PRK14963 117 RKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA- 195 (504)
T ss_pred CeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC-
Confidence 458899999855 457777777765445555555554 34443333 2346899999999999999988774322211
Q ss_pred cHHHHHHHHHHHhCCCchHH
Q 021517 78 GYEELSCKVMKYAQGVPLAL 97 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai 97 (311)
..+....|++.++|.+--+
T Consensus 196 -~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 196 -EPEALQLVARLADGAMRDA 214 (504)
T ss_pred -CHHHHHHHHHHcCCCHHHH
Confidence 2356788999999988544
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.29 E-value=0.11 Score=27.70 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=17.7
Q ss_pred CceeEEeeeCCCCCCCCCCC
Q 021517 257 AEVKYLHWYGYPLKSLPSNL 276 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i 276 (311)
.+|++|+|++|.++.+|..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 46899999999999999864
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.29 E-value=0.11 Score=27.70 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=17.7
Q ss_pred CceeEEeeeCCCCCCCCCCC
Q 021517 257 AEVKYLHWYGYPLKSLPSNL 276 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i 276 (311)
.+|++|+|++|.++.+|..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 46899999999999999864
No 79
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.15 E-value=2 Score=41.24 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=63.4
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEE-EEeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRII-ITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Il-vTTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|+++.. ..++.+...+....+.+.+| +||+...+...+ .....+++.+++.++....+.+.+-..+...
T Consensus 129 ~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i- 207 (507)
T PRK06645 129 HKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT- 207 (507)
T ss_pred cEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-
Confidence 457999999864 45888877766544555554 566666665544 2335789999999999999988874322211
Q ss_pred cHHHHHHHHHHHhCCCchHH
Q 021517 78 GYEELSCKVMKYAQGVPLAL 97 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai 97 (311)
..+....|++.++|.+--+
T Consensus 208 -e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 208 -DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred -CHHHHHHHHHHcCCCHHHH
Confidence 2345677888999977433
No 80
>PRK15386 type III secretion protein GogB; Provisional
Probab=90.97 E-value=0.17 Score=46.79 Aligned_cols=49 Identities=12% Similarity=0.109 Sum_probs=35.1
Q ss_pred cccCCCCCCCceeEEeeeCC-CCCCCCCCCCCCCceEEEcCCC---CccccccccccCc
Q 021517 248 ISYLQDPGFAEVKYLHWYGY-PLKSLPSNLSAKKLVLVEVPDS---DIERLWHCVKVCI 302 (311)
Q Consensus 248 ~~lp~~~~~~~Lr~L~l~~~-~i~~lP~~i~L~~L~~L~L~~~---~i~~LP~~i~~L~ 302 (311)
..+|+.+. ..|++|++++| .+.++|++ |++|+++++ .+..||+++..|.
T Consensus 86 tsLP~~LP-~nLe~L~Ls~Cs~L~sLP~s-----Le~L~L~~n~~~~L~~LPssLk~L~ 138 (426)
T PRK15386 86 TTLPGSIP-EGLEKLTVCHCPEISGLPES-----VRSLEIKGSATDSIKNVPNGLTSLS 138 (426)
T ss_pred ccCCchhh-hhhhheEccCcccccccccc-----cceEEeCCCCCcccccCcchHhhee
Confidence 34454332 78999999999 68888876 444555553 5889999988774
No 81
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=90.50 E-value=0.013 Score=45.40 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=43.1
Q ss_pred cccccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccc
Q 021517 246 CKISYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHC 297 (311)
Q Consensus 246 ~~~~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~ 297 (311)
....+|..+.. +.||.|+++.|++...|.-| .|.+|-+|+..++.+.++|-.
T Consensus 88 eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 88 EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 34577877766 89999999999999999888 899999999988888888754
No 82
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.34 E-value=0.13 Score=48.13 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=19.5
Q ss_pred CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCcccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWH 296 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~ 296 (311)
..|+.|++++|.|..++..=.|..|++|+++++.+..++.
T Consensus 140 ~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 140 TLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred cchhhheeccCcchhccCCccchhhhcccCCcchhhhhhh
Confidence 3355555555555444332235555555555555554444
No 83
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=90.03 E-value=5.1 Score=40.25 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=64.0
Q ss_pred EEEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEEEeCchh-HHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~~-va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
-++|||++.... .++.++..+..-....++|+||.+.. +...+ +-...+.+..++.++..+.+.+.+...+- .-
T Consensus 121 KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~i 198 (830)
T PRK07003 121 KVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--AF 198 (830)
T ss_pred eEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CC
Confidence 368899998664 47888777655455677777776653 32222 23468999999999999999887633221 11
Q ss_pred HHHHHHHHHHHhCCCc-hHHHHH
Q 021517 79 YEELSCKVMKYAQGVP-LALKVL 100 (311)
Q Consensus 79 ~~~~~~~i~~~c~glP-Lai~~~ 100 (311)
..+....|++.++|.. -|+..+
T Consensus 199 d~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 199 EPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2356778889998865 455443
No 84
>PRK05642 DNA replication initiation factor; Validated
Probab=89.95 E-value=2.6 Score=36.07 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=56.7
Q ss_pred EEEEeCCCCH---HHHHH-HHhcCCC-CCCCcEEEEEeCchhH---------HHhcCCCceEEcCCCCHHHHHHHHHHhh
Q 021517 4 LIVFDDVTCF---SQIES-LIGSLDW-LTPVSRIIITTRNKQV---------LRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (311)
Q Consensus 4 LlVLDdv~~~---~~~~~-l~~~~~~-~~~gs~IlvTTR~~~v---------a~~~~~~~~~~l~~L~~~~a~~Lf~~~a 69 (311)
+||+||+... ..|+. +...+.. ...|..||+||+...- ...++...++++++++.++-.+.+..++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 6889999633 23433 3333221 1246679998875332 1122334678999999999999998766
Q ss_pred cCCCCCCccHHHHHHHHHHHhCCCchHHHHH
Q 021517 70 FKQNHPDVGYEELSCKVMKYAQGVPLALKVL 100 (311)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 100 (311)
....-. -..++..-|++.+.|..-++..+
T Consensus 180 ~~~~~~--l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 180 SRRGLH--LTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHcCCC--CCHHHHHHHHHhcCCCHHHHHHH
Confidence 432211 11366677777777765544433
No 85
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.81 E-value=3.5 Score=37.76 Aligned_cols=94 Identities=13% Similarity=0.131 Sum_probs=61.9
Q ss_pred EEEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEEEeCch-hHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~-~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
-++|+|++.... .++.+...+.......++|++|.+. .+...+ +-...+++.+++.++..+.+...+-..+.. -
T Consensus 121 kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~--i 198 (363)
T PRK14961 121 KVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID--T 198 (363)
T ss_pred eEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC--C
Confidence 489999998665 4777777765545566666666543 333332 223689999999999998888765332211 1
Q ss_pred HHHHHHHHHHHhCCCchHHH
Q 021517 79 YEELSCKVMKYAQGVPLALK 98 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai~ 98 (311)
..+.+..|++.++|.|-.+.
T Consensus 199 ~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 199 DEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred CHHHHHHHHHHcCCCHHHHH
Confidence 23556778999999885433
No 86
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.53 E-value=16 Score=33.19 Aligned_cols=182 Identities=14% Similarity=0.117 Sum_probs=94.3
Q ss_pred CeEEEEEeCCCCHH-----HHHHHHhcC-CCCC--CCcEEEEEeCchhHHHhcC------C-CceEEcCCCCHHHHHHHH
Q 021517 1 MKVLIVFDDVTCFS-----QIESLIGSL-DWLT--PVSRIIITTRNKQVLRNWG------V-RKIYEMKALEYHHAIRLF 65 (311)
Q Consensus 1 kr~LlVLDdv~~~~-----~~~~l~~~~-~~~~--~gs~IlvTTR~~~va~~~~------~-~~~~~l~~L~~~~a~~Lf 65 (311)
++++||||+++... .+..+.... .... ....+|.+|.......... . ...+.+++.+.++..+++
T Consensus 129 ~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il 208 (365)
T TIGR02928 129 DSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDIL 208 (365)
T ss_pred CeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHH
Confidence 35789999998762 133333221 1111 2234455554443322211 1 246899999999999999
Q ss_pred HHhhc---CCCCCCccHHHHHHHHHHHhCCCch-HHHHHHHHh--c---c---ccHHHHHHHHHHHhccCcccHHHHHhh
Q 021517 66 SRHAF---KQNHPDVGYEELSCKVMKYAQGVPL-ALKVLGCFL--H---K---REKEVWESATDKLQRILYPSILEVLKI 133 (311)
Q Consensus 66 ~~~a~---~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~~L--~---~---~~~~~w~~~~~~l~~~~~~~i~~~l~~ 133 (311)
..++- .....+++..+.+..++....|.|- |+..+-.+. + + -+.+..+.+.+.+. .....-
T Consensus 209 ~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~ 281 (365)
T TIGR02928 209 ENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLE 281 (365)
T ss_pred HHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHH
Confidence 98863 1112233333455566777778884 333322211 1 1 14445554444431 223344
Q ss_pred hcccCchhhhhhhhhhhcCC--C--CcCHHHHHHHHH--H--cCCCc------ccchHHHhhcccceecC
Q 021517 134 SYDSLDDKEKNIFLDVACFF--Q--GEDVDLVMKFFN--A--SGFYP------EIGMSVLVDKSLIAIDS 189 (311)
Q Consensus 134 sy~~L~~~~k~cfl~ls~fp--~--~~~~~~l~~~w~--a--~g~~~------~~~~~~L~~~sl~~~~~ 189 (311)
+...||.+.+..+..++..- . .+...++...+. + .|..+ ..+++.|...|++....
T Consensus 282 ~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 282 LIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 66788888886665544221 1 123344443221 1 23222 34578888888888653
No 87
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=89.20 E-value=4.8 Score=36.48 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=62.6
Q ss_pred EEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCchh-HHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~-va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
-++|+|++... ...+.+...+......+.+|++|.+.+ +...+ .....+++.++++++..+.+...+-..+...
T Consensus 119 ~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i-- 196 (355)
T TIGR02397 119 KVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI-- 196 (355)
T ss_pred eEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC--
Confidence 47889998654 456677666654445666666665443 33322 2235788999999999888887663222111
Q ss_pred HHHHHHHHHHHhCCCchHHHHHH
Q 021517 79 YEELSCKVMKYAQGVPLALKVLG 101 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai~~~~ 101 (311)
..+.+..+++.++|.|..+....
T Consensus 197 ~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 197 EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CHHHHHHHHHHcCCChHHHHHHH
Confidence 13667888999999886655443
No 88
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=89.01 E-value=2.5 Score=40.01 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=62.1
Q ss_pred EEEEeCCCCHH---H-HHHHHhcCCC-CCCCcEEEEEeCch---------hHHHhcCCCceEEcCCCCHHHHHHHHHHhh
Q 021517 4 LIVFDDVTCFS---Q-IESLIGSLDW-LTPVSRIIITTRNK---------QVLRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (311)
Q Consensus 4 LlVLDdv~~~~---~-~~~l~~~~~~-~~~gs~IlvTTR~~---------~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a 69 (311)
+||+||+.... . .+.+...+.. ...|..||+|+... .+...+...-++.+++++.++-.+++.+.+
T Consensus 209 vLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 209 VLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHH
Confidence 78999996432 2 2333322221 12445788886643 223334445688999999999999999887
Q ss_pred cCCCCCCccHHHHHHHHHHHhCCCchHHHHHHH
Q 021517 70 FKQNHPDVGYEELSCKVMKYAQGVPLALKVLGC 102 (311)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 102 (311)
-..+-...-..++..-|++.++|.|-.+..+..
T Consensus 289 ~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 289 KNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 332211123357788899999999877665543
No 89
>PRK06620 hypothetical protein; Validated
Probab=88.93 E-value=5.6 Score=33.48 Aligned_cols=87 Identities=6% Similarity=0.034 Sum_probs=51.0
Q ss_pred EEEEeCCCCHHH--HHHHHhcCCCCCCCcEEEEEeCchh-------HHHhcCCCceEEcCCCCHHHHHHHHHHhhcCCCC
Q 021517 4 LIVFDDVTCFSQ--IESLIGSLDWLTPVSRIIITTRNKQ-------VLRNWGVRKIYEMKALEYHHAIRLFSRHAFKQNH 74 (311)
Q Consensus 4 LlVLDdv~~~~~--~~~l~~~~~~~~~gs~IlvTTR~~~-------va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~ 74 (311)
++++||+...++ +-.+...+. ..|..||+|++... ....+...-++++++++.++-..++.+.+-...-
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l 165 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSV 165 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC
Confidence 688999975432 222221221 34668999997432 2333444558999999999988888777632111
Q ss_pred CCccHHHHHHHHHHHhCCCc
Q 021517 75 PDVGYEELSCKVMKYAQGVP 94 (311)
Q Consensus 75 ~~~~~~~~~~~i~~~c~glP 94 (311)
.--+++..-|++.+.|.-
T Consensus 166 --~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 166 --TISRQIIDFLLVNLPREY 183 (214)
T ss_pred --CCCHHHHHHHHHHccCCH
Confidence 112355666666665544
No 90
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=88.56 E-value=0.19 Score=45.70 Aligned_cols=59 Identities=12% Similarity=0.074 Sum_probs=42.5
Q ss_pred cccccCCCCCCCceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccc-cccccCcccc
Q 021517 246 CKISYLQDPGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLW-HCVKVCISYY 305 (311)
Q Consensus 246 ~~~~lp~~~~~~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP-~~i~~L~~L~ 305 (311)
...++|.++.. .--.+.|..|.|++||+.. .|++|+.|||++++|..+- ....-|.+|-
T Consensus 57 GL~eVP~~LP~-~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~ 118 (498)
T KOG4237|consen 57 GLTEVPANLPP-ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLL 118 (498)
T ss_pred CcccCcccCCC-cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhh
Confidence 34566666554 2234677889999999987 5999999999999999874 4444444443
No 91
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=87.91 E-value=3.6 Score=37.19 Aligned_cols=91 Identities=11% Similarity=0.185 Sum_probs=59.2
Q ss_pred EEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCch-hHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCccH
Q 021517 4 LIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGY 79 (311)
Q Consensus 4 LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~-~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~ 79 (311)
++|+|+++.. +..+.++..+..-..++.+|+||.+. .+...+ +-...+.+.+++.+++.+.+.... +. ..
T Consensus 109 v~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~-----~~ 182 (328)
T PRK05707 109 VVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE-----SD 182 (328)
T ss_pred EEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc-----CC
Confidence 4567999854 44666666654444566677777665 444333 334679999999999998887653 11 11
Q ss_pred HHHHHHHHHHhCCCchHHHHH
Q 021517 80 EELSCKVMKYAQGVPLALKVL 100 (311)
Q Consensus 80 ~~~~~~i~~~c~glPLai~~~ 100 (311)
.+.+..++..++|.|.....+
T Consensus 183 ~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred hHHHHHHHHHcCCCHHHHHHH
Confidence 234567788999999755443
No 92
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=87.74 E-value=4.3 Score=37.64 Aligned_cols=91 Identities=13% Similarity=0.200 Sum_probs=59.4
Q ss_pred EEEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEEEeCc-hhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~-~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
-++|+|++.... ..+.+...+....+++.+|++|.+ ..+...+ +-...+.+.+++.++..+.+.... + .+
T Consensus 119 kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~---~~-- 192 (394)
T PRK07940 119 RIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G---VD-- 192 (394)
T ss_pred EEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C---CC--
Confidence 367889998653 355666655444456656665555 4444333 334689999999999998887443 1 11
Q ss_pred HHHHHHHHHHHhCCCchHHHHH
Q 021517 79 YEELSCKVMKYAQGVPLALKVL 100 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai~~~ 100 (311)
.+.+..++..++|.|.....+
T Consensus 193 -~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 193 -PETARRAARASQGHIGRARRL 213 (394)
T ss_pred -HHHHHHHHHHcCCCHHHHHHH
Confidence 355778899999999754433
No 93
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.48 E-value=0.35 Score=25.88 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=14.6
Q ss_pred CCceEEEcCCCCcccccc
Q 021517 279 KKLVLVEVPDSDIERLWH 296 (311)
Q Consensus 279 ~~L~~L~L~~~~i~~LP~ 296 (311)
.+|++|+++++++++||+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 367888888888888886
No 94
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=87.10 E-value=4.4 Score=36.35 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=57.6
Q ss_pred EEEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEEEeCchh-HHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~~-va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
-+||+||+.... ..+.+...+......+++|+||.... +.... .....+++.+++.++....+...+-..+.. -
T Consensus 127 ~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~ 204 (337)
T PRK12402 127 KTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--Y 204 (337)
T ss_pred cEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--C
Confidence 379999997542 34444444433344567877775432 22222 223578899999999998888876332211 1
Q ss_pred HHHHHHHHHHHhCCCchHHH
Q 021517 79 YEELSCKVMKYAQGVPLALK 98 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai~ 98 (311)
..+....+++.++|.+-.+.
T Consensus 205 ~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 205 DDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CHHHHHHHHHHcCCCHHHHH
Confidence 23567788888888765443
No 95
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=86.46 E-value=15 Score=32.63 Aligned_cols=93 Identities=9% Similarity=0.125 Sum_probs=57.5
Q ss_pred EEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCchh-HHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~-va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
-++++|++... +..+.+...+......+++|+++.... +.... .....+++.+++.++....+...+-..+.. -
T Consensus 104 ~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~--i 181 (319)
T PRK00440 104 KIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIE--I 181 (319)
T ss_pred eEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCC--C
Confidence 47899998754 334555555444445567777764321 21111 122478999999999988888877432221 1
Q ss_pred HHHHHHHHHHHhCCCchHH
Q 021517 79 YEELSCKVMKYAQGVPLAL 97 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai 97 (311)
..+....+++.++|.+--+
T Consensus 182 ~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 182 TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CHHHHHHHHHHcCCCHHHH
Confidence 2356778889999887543
No 96
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.12 E-value=0.68 Score=40.80 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=33.0
Q ss_pred CceeEEeeeCCC----CCCCCCCCCCCCceEEEcCCCC--ccccccccccCcccccc
Q 021517 257 AEVKYLHWYGYP----LKSLPSNLSAKKLVLVEVPDSD--IERLWHCVKVCISYYTC 307 (311)
Q Consensus 257 ~~Lr~L~l~~~~----i~~lP~~i~L~~L~~L~L~~~~--i~~LP~~i~~L~~L~~l 307 (311)
++|++|+|+.|+ |.++| ..+.+|++|-|.||. -+.+-+....|+.++-|
T Consensus 97 P~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 97 PALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred ccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 788999998885 56666 567788888888873 34444555555544443
No 97
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.96 E-value=3.1 Score=40.99 Aligned_cols=97 Identities=12% Similarity=0.084 Sum_probs=64.1
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcE-EEEEeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSR-IIITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~-IlvTTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
.-++|+|+++.. +.++.++..+..-..+++ |++||....+...+ +-...+.+..++.++..+.+.+.+...+..
T Consensus 125 ~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~-- 202 (700)
T PRK12323 125 FKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA-- 202 (700)
T ss_pred ceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC--
Confidence 347899999865 457888877654444554 56666556665443 224689999999999999888776322211
Q ss_pred cHHHHHHHHHHHhCCCchHHHHH
Q 021517 78 GYEELSCKVMKYAQGVPLALKVL 100 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai~~~ 100 (311)
...+....|++.++|.|.....+
T Consensus 203 ~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 203 HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHH
Confidence 12245678899999998644433
No 98
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=85.53 E-value=4.5 Score=34.20 Aligned_cols=89 Identities=11% Similarity=0.163 Sum_probs=47.2
Q ss_pred EEEEeCCCCHH---HHHHH-HhcCCC-CCCCcEEEEEeCch---------hHHHhcCCCceEEcCCCCHHHHHHHHHHhh
Q 021517 4 LIVFDDVTCFS---QIESL-IGSLDW-LTPVSRIIITTRNK---------QVLRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (311)
Q Consensus 4 LlVLDdv~~~~---~~~~l-~~~~~~-~~~gs~IlvTTR~~---------~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a 69 (311)
+|++||+.... .|+.. ...+.. ...|.+||+|++.. +....+...-++++++++.++-.+++.+.+
T Consensus 100 lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 100 LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHH
T ss_pred EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 68999997542 23221 111110 12566899999553 222333445689999999999999999888
Q ss_pred cCCCCCCccHHHHHHHHHHHhCCCc
Q 021517 70 FKQNHPDVGYEELSCKVMKYAQGVP 94 (311)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glP 94 (311)
-...-. --.+++.-|++.+.+..
T Consensus 180 ~~~~~~--l~~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 180 KERGIE--LPEEVIEYLARRFRRDV 202 (219)
T ss_dssp HHTT----S-HHHHHHHHHHTTSSH
T ss_pred HHhCCC--CcHHHHHHHHHhhcCCH
Confidence 432221 12245555555555443
No 99
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.48 E-value=6.7 Score=33.11 Aligned_cols=99 Identities=17% Similarity=0.130 Sum_probs=55.4
Q ss_pred EEEEeCCCCHH--HHHHHHhcCCCC-CCCc-EEEEEeCchhHHH--------hcCCCceEEcCCCCHHHHHHHHHHhhcC
Q 021517 4 LIVFDDVTCFS--QIESLIGSLDWL-TPVS-RIIITTRNKQVLR--------NWGVRKIYEMKALEYHHAIRLFSRHAFK 71 (311)
Q Consensus 4 LlVLDdv~~~~--~~~~l~~~~~~~-~~gs-~IlvTTR~~~va~--------~~~~~~~~~l~~L~~~~a~~Lf~~~a~~ 71 (311)
+||+||+.... .-+.+...+... ..|. .||+|++...... .+.....++++++++++-..++.+.+-.
T Consensus 93 ~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~ 172 (227)
T PRK08903 93 LYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAE 172 (227)
T ss_pred EEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHH
Confidence 68999997442 222232222111 1333 4677766543221 2222368899999998877776654321
Q ss_pred CCCCCccHHHHHHHHHHHhCCCchHHHHHHHHh
Q 021517 72 QNHPDVGYEELSCKVMKYAQGVPLALKVLGCFL 104 (311)
Q Consensus 72 ~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 104 (311)
.. ..--.+....+++.+.|.+..+..+-..+
T Consensus 173 ~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 173 RG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11 11123566777778888887776665544
No 100
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=85.14 E-value=14 Score=33.18 Aligned_cols=87 Identities=16% Similarity=0.277 Sum_probs=58.9
Q ss_pred EEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEEEeCc-hhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCccH
Q 021517 4 LIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGY 79 (311)
Q Consensus 4 LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~-~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~ 79 (311)
.+|+|++.... ..+.++..+..-.+++.+|++|.+ ..+..++ +-...+.+.+++.+++.+.+.... . +
T Consensus 111 V~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~-~--- 182 (319)
T PRK06090 111 LFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I-T--- 182 (319)
T ss_pred EEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-c---
Confidence 67889988654 467777666554566666665554 4555554 334689999999999999886531 1 1
Q ss_pred HHHHHHHHHHhCCCchHHHHH
Q 021517 80 EELSCKVMKYAQGVPLALKVL 100 (311)
Q Consensus 80 ~~~~~~i~~~c~glPLai~~~ 100 (311)
.+..++..++|.|+....+
T Consensus 183 --~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 --VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred --hHHHHHHHcCCCHHHHHHH
Confidence 1356788999999866544
No 101
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=84.61 E-value=0.95 Score=37.62 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=23.0
Q ss_pred CceeEEeeeCCCCCCCCCCC-C-CCCceEEEcCCCCcccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNL-S-AKKLVLVEVPDSDIERL 294 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i-~-L~~L~~L~L~~~~i~~L 294 (311)
+.|..|.|.+|+|..+-+.+ . +.+|++|.|.+++|.+|
T Consensus 64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l 103 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL 103 (233)
T ss_pred cccceEEecCCcceeeccchhhhccccceEEecCcchhhh
Confidence 56666666666666666666 3 55566666666555544
No 102
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.30 E-value=13 Score=36.67 Aligned_cols=101 Identities=10% Similarity=0.102 Sum_probs=64.8
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCc-hhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~-~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|++... +.++.+...+........+|++|.+ ..+...+ .-...+++.+++.++....+...+...+..
T Consensus 120 ~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~-- 197 (624)
T PRK14959 120 YKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD-- 197 (624)
T ss_pred ceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC--
Confidence 458899999755 4467777766443345555555544 4444332 223578999999999998888766432211
Q ss_pred cHHHHHHHHHHHhCCCc-hHHHHHHHHh
Q 021517 78 GYEELSCKVMKYAQGVP-LALKVLGCFL 104 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glP-Lai~~~~~~L 104 (311)
-..+.+..|++.++|.+ -|+..+..++
T Consensus 198 id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 198 YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12356778888999855 6777766544
No 103
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=84.10 E-value=3.9 Score=37.47 Aligned_cols=88 Identities=17% Similarity=0.297 Sum_probs=53.1
Q ss_pred EEEEEeCCCCH-------------H---HHHHHHhcCCC--CCCCcEEEEEeCchhHHH-----hcCCCceEEcCCCCHH
Q 021517 3 VLIVFDDVTCF-------------S---QIESLIGSLDW--LTPVSRIIITTRNKQVLR-----NWGVRKIYEMKALEYH 59 (311)
Q Consensus 3 ~LlVLDdv~~~-------------~---~~~~l~~~~~~--~~~gs~IlvTTR~~~va~-----~~~~~~~~~l~~L~~~ 59 (311)
.+|++||++.. + .+..+...+.. ...+.+||.||...+... ....+..+.++..+.+
T Consensus 217 ~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~ 296 (364)
T TIGR01242 217 SIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFE 296 (364)
T ss_pred cEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHH
Confidence 58999998753 1 13333333221 124567888887543221 1123568899999999
Q ss_pred HHHHHHHHhhcCCCCCC-ccHHHHHHHHHHHhCCCc
Q 021517 60 HAIRLFSRHAFKQNHPD-VGYEELSCKVMKYAQGVP 94 (311)
Q Consensus 60 ~a~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~c~glP 94 (311)
+..++|..++.+..... .+ ...+++.+.|..
T Consensus 297 ~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 297 GRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 99999998875433222 22 345666676664
No 104
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=84.10 E-value=0.81 Score=42.30 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=40.1
Q ss_pred CceeEEeeeCCCCC--CCCCC------CCCCCceEEEcCCCCcccccc--ccccCcccccccc
Q 021517 257 AEVKYLHWYGYPLK--SLPSN------LSAKKLVLVEVPDSDIERLWH--CVKVCISYYTCGI 309 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~--~lP~~------i~L~~L~~L~L~~~~i~~LP~--~i~~L~~L~~l~i 309 (311)
+.|+.|+++.|++. .+|+. ..+..|+||++..++|.+.|+ .+..|.+|+++.+
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 89999999999875 34554 258899999999999987773 4555666676653
No 105
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.97 E-value=0.86 Score=24.40 Aligned_cols=17 Identities=12% Similarity=0.368 Sum_probs=13.0
Q ss_pred CCCceEEEcCCCCcccc
Q 021517 278 AKKLVLVEVPDSDIERL 294 (311)
Q Consensus 278 L~~L~~L~L~~~~i~~L 294 (311)
|.+|++|+|+.++|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 56788888888877644
No 106
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=83.04 E-value=1.1 Score=37.25 Aligned_cols=63 Identities=16% Similarity=0.007 Sum_probs=48.9
Q ss_pred cccccCCCCCC--CceeEEeeeCCCCCCCCCCC---CCCCceEEEcCCCCcccccc----ccccCccccccc
Q 021517 246 CKISYLQDPGF--AEVKYLHWYGYPLKSLPSNL---SAKKLVLVEVPDSDIERLWH----CVKVCISYYTCG 308 (311)
Q Consensus 246 ~~~~lp~~~~~--~~Lr~L~l~~~~i~~lP~~i---~L~~L~~L~L~~~~i~~LP~----~i~~L~~L~~l~ 308 (311)
....+.+.+.. ++|..|.|.+|+|..|-+-- .+..|+||.+=++.+++.+. -|.+|++|++|+
T Consensus 75 rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LD 146 (233)
T KOG1644|consen 75 RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLD 146 (233)
T ss_pred cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEee
Confidence 34456666666 88999999999877665432 57899999999998888776 478899999887
No 107
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.00 E-value=0.63 Score=24.10 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=9.3
Q ss_pred CCCceEEEcCCCCcc
Q 021517 278 AKKLVLVEVPDSDIE 292 (311)
Q Consensus 278 L~~L~~L~L~~~~i~ 292 (311)
+++|++|+|++|+|.
T Consensus 1 ~~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNNQIT 15 (24)
T ss_dssp -TT-SEEE-TSSBEH
T ss_pred CCCCCEEEccCCcCC
Confidence 357888888888765
No 108
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=82.65 E-value=0.14 Score=50.25 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=40.4
Q ss_pred ccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCcccccc
Q 021517 249 SYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWH 296 (311)
Q Consensus 249 ~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~ 296 (311)
.+..++.. ++|+.|||++|++.+.- .+ .|.+|+.|||++|.++.+|.
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~ 226 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQ 226 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccc
Confidence 44566777 89999999999988876 55 79999999999999999996
No 109
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=81.10 E-value=11 Score=33.89 Aligned_cols=90 Identities=13% Similarity=0.174 Sum_probs=58.1
Q ss_pred EEEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEEEeCc-hhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~-~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
=++|+|+++... .-+.++..+..-..++.+|++|.+ ..+...+ +-...+.+.+++.+++.+.+.... .+
T Consensus 115 kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~~-- 187 (319)
T PRK08769 115 QVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----VS-- 187 (319)
T ss_pred EEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----CC--
Confidence 478899998654 345555554433456666666654 4454443 334688999999999988886531 11
Q ss_pred HHHHHHHHHHHhCCCchHHHHH
Q 021517 79 YEELSCKVMKYAQGVPLALKVL 100 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai~~~ 100 (311)
...+..++..++|.|+....+
T Consensus 188 -~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 188 -ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred -hHHHHHHHHHcCCCHHHHHHH
Confidence 233667899999999865443
No 110
>PLN03025 replication factor C subunit; Provisional
Probab=81.04 E-value=17 Score=32.58 Aligned_cols=91 Identities=10% Similarity=0.155 Sum_probs=55.6
Q ss_pred EEEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEEEeCch-hHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~-~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
-++|+|+++... ..+.+...+......+++++++... .+.... .....+++.+++.++....+...+-..+..-
T Consensus 101 kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i-- 178 (319)
T PLN03025 101 KIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPY-- 178 (319)
T ss_pred EEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCC--
Confidence 479999998653 3344444333334556777766442 222211 1224789999999999998887773322211
Q ss_pred HHHHHHHHHHHhCCCch
Q 021517 79 YEELSCKVMKYAQGVPL 95 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPL 95 (311)
..+....|++.++|..-
T Consensus 179 ~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 179 VPEGLEAIIFTADGDMR 195 (319)
T ss_pred CHHHHHHHHHHcCCCHH
Confidence 13567788888988763
No 111
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=80.89 E-value=19 Score=32.31 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=59.0
Q ss_pred eEEEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEEEeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 2 KVLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 2 r~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
+=++|+|++.... ..+.++..+..-.+..-|++|+....+...+ +-...+.+.++++++..+.+....... .
T Consensus 125 ~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-----~ 199 (314)
T PRK07399 125 RKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-----I 199 (314)
T ss_pred ceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-----c
Confidence 3468899987553 4666666554333333455555555554444 334689999999999999998764211 1
Q ss_pred HHHHHHHHHHHhCCCchHHHHH
Q 021517 79 YEELSCKVMKYAQGVPLALKVL 100 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai~~~ 100 (311)
.......++..++|.|..+..+
T Consensus 200 ~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 200 LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred chhHHHHHHHHcCCCHHHHHHH
Confidence 1111357889999999765543
No 112
>PRK04195 replication factor C large subunit; Provisional
Probab=80.38 E-value=52 Score=31.44 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=60.0
Q ss_pred eEEEEEeCCCCHH------HHHHHHhcCCCCCCCcEEEEEeCch-hHHH-hc-CCCceEEcCCCCHHHHHHHHHHhhcCC
Q 021517 2 KVLIVFDDVTCFS------QIESLIGSLDWLTPVSRIIITTRNK-QVLR-NW-GVRKIYEMKALEYHHAIRLFSRHAFKQ 72 (311)
Q Consensus 2 r~LlVLDdv~~~~------~~~~l~~~~~~~~~gs~IlvTTR~~-~va~-~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 72 (311)
+-+||+|+++... .+..+...+. ..+..||+|+.+. .... .. .....+.+.+++.++....+.+.+...
T Consensus 99 ~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~e 176 (482)
T PRK04195 99 RKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKE 176 (482)
T ss_pred CeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHc
Confidence 5689999998642 2555555444 2334466666432 1111 11 234578999999999998888776432
Q ss_pred CCCCccHHHHHHHHHHHhCCCchHHHHHHHHh
Q 021517 73 NHPDVGYEELSCKVMKYAQGVPLALKVLGCFL 104 (311)
Q Consensus 73 ~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 104 (311)
+..- ..+....|++.++|..-.+......+
T Consensus 177 gi~i--~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 177 GIEC--DDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred CCCC--CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2211 13667889999999776554433333
No 113
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=79.86 E-value=12 Score=37.83 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=53.4
Q ss_pred eEEEEEeCCCC--HHHHHHHHhcCCCCCCCcEEEEE--eCchh--HHHhc-CCCceEEcCCCCHHHHHHHHHHhhcC---
Q 021517 2 KVLIVFDDVTC--FSQIESLIGSLDWLTPVSRIIIT--TRNKQ--VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFK--- 71 (311)
Q Consensus 2 r~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IlvT--TR~~~--va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~--- 71 (311)
+.+||+||++. ..+++.+.+.+. .|+.++|+ |.+.. +.... .-...+.+++++.++...++.+.+-.
T Consensus 110 ~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~ 186 (725)
T PRK13341 110 RTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKER 186 (725)
T ss_pred ceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHh
Confidence 45899999974 456777776554 35555553 44331 21111 22357999999999999999876531
Q ss_pred --CCCCCccHHHHHHHHHHHhCCCc
Q 021517 72 --QNHPDVGYEELSCKVMKYAQGVP 94 (311)
Q Consensus 72 --~~~~~~~~~~~~~~i~~~c~glP 94 (311)
+.....-..+....|++.+.|.-
T Consensus 187 ~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 187 GYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hcCCcccCCCHHHHHHHHHhCCCCH
Confidence 01111112345566777777653
No 114
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.37 E-value=19 Score=34.36 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=61.8
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCc-hhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~-~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|+++.. +..+.+...+........+|++|.+ ..+...+ .....+++.+++.++....+.+.+-..+..
T Consensus 118 ~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~-- 195 (472)
T PRK14962 118 YKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE-- 195 (472)
T ss_pred eEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC--
Confidence 458999999855 3466666665533334444444433 4443333 233689999999999988888776332211
Q ss_pred cHHHHHHHHHHHhCC-CchHHHHHHHHh
Q 021517 78 GYEELSCKVMKYAQG-VPLALKVLGCFL 104 (311)
Q Consensus 78 ~~~~~~~~i~~~c~g-lPLai~~~~~~L 104 (311)
-..+....|++.++| ++.|+..+..+.
T Consensus 196 i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 196 IDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 123556778887754 567777665543
No 115
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.89 E-value=14 Score=36.60 Aligned_cols=95 Identities=11% Similarity=0.122 Sum_probs=61.3
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCch-hHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~-~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|++... ...+.+...+.....+.++|++|.+. .+...+ .....+++.+++.++..+.+.+.+-..+..
T Consensus 119 ~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~-- 196 (702)
T PRK14960 119 FKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA-- 196 (702)
T ss_pred cEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC--
Confidence 347899999865 45677776665444556677766553 332221 334689999999999999888776332211
Q ss_pred cHHHHHHHHHHHhCCCchHHH
Q 021517 78 GYEELSCKVMKYAQGVPLALK 98 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai~ 98 (311)
--.+....|++.++|.+-.+.
T Consensus 197 id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 197 ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred CCHHHHHHHHHHcCCCHHHHH
Confidence 123456778888988774443
No 116
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.61 E-value=18 Score=33.03 Aligned_cols=93 Identities=12% Similarity=0.193 Sum_probs=57.3
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEe-CchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITT-RNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTT-R~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|++... ..++.+...+......+.+|++| ....+.... .....++..++++++....+...+-..+..
T Consensus 109 ~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~-- 186 (367)
T PRK14970 109 YKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK-- 186 (367)
T ss_pred cEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC--
Confidence 347999998754 34667665554333445555555 333333222 223578999999999998888776432221
Q ss_pred cHHHHHHHHHHHhCCCchH
Q 021517 78 GYEELSCKVMKYAQGVPLA 96 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLa 96 (311)
-..+.+..+++.++|.+-.
T Consensus 187 i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 187 FEDDALHIIAQKADGALRD 205 (367)
T ss_pred CCHHHHHHHHHhCCCCHHH
Confidence 1136677888889886643
No 117
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.47 E-value=14 Score=34.32 Aligned_cols=94 Identities=11% Similarity=0.099 Sum_probs=60.6
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEe-CchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITT-RNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTT-R~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|++... +.++.+...+.+..+.+.+|++| +...+...+ .....+++.++++++....+...+-..+. .
T Consensus 128 ~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~ 205 (397)
T PRK14955 128 YRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--S 205 (397)
T ss_pred eEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--C
Confidence 447899999854 45777777766545566655544 444444332 12247899999999988888776522111 1
Q ss_pred cHHHHHHHHHHHhCCCchHH
Q 021517 78 GYEELSCKVMKYAQGVPLAL 97 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai 97 (311)
-..+.+..|++.++|.+--+
T Consensus 206 i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 206 VDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred CCHHHHHHHHHHcCCCHHHH
Confidence 22366788999999977533
No 118
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=77.37 E-value=1.6 Score=37.54 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=31.5
Q ss_pred CceeEEeeeCCCCCCCCCCC----CCCCceEEEcCCCCccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNL----SAKKLVLVEVPDSDIERLW 295 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i----~L~~L~~L~L~~~~i~~LP 295 (311)
+.|++|+|++|.|+- ++++ +|.+|..||+..|..+.+-
T Consensus 91 P~l~~l~ls~Nki~~-lstl~pl~~l~nL~~Ldl~n~~~~~l~ 132 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKD-LSTLRPLKELENLKSLDLFNCSVTNLD 132 (260)
T ss_pred CceeEEeecCCcccc-ccccchhhhhcchhhhhcccCCccccc
Confidence 899999999998765 5666 5889999999999776653
No 119
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=77.06 E-value=0.74 Score=42.56 Aligned_cols=55 Identities=5% Similarity=-0.043 Sum_probs=35.4
Q ss_pred CceeEEeeeCCCC---CCCCCCC-CCCCceEEEcCCCCccccccccc--cCccccccccCC
Q 021517 257 AEVKYLHWYGYPL---KSLPSNL-SAKKLVLVEVPDSDIERLWHCVK--VCISYYTCGIFQ 311 (311)
Q Consensus 257 ~~Lr~L~l~~~~i---~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~--~L~~L~~l~i~q 311 (311)
+++|-|||++|=+ ..+-+-+ +|++|+.|+|+.+.+....++.. -+.+|++|.++|
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~ 206 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNS 206 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEecc
Confidence 8888888888743 3333333 58888888888887766655432 344566555543
No 120
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=76.38 E-value=14 Score=36.87 Aligned_cols=95 Identities=9% Similarity=0.053 Sum_probs=58.6
Q ss_pred eEEEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEEEeCch-hHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~-~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|++.... ..+.++..+......+++|++|.+. .+...+ +-...+.+.+++.++....+.+.+-..+..
T Consensus 120 ~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~-- 197 (709)
T PRK08691 120 YKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA-- 197 (709)
T ss_pred cEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--
Confidence 4588999998654 3555555554333455666666443 332222 223467888999999999888776332211
Q ss_pred cHHHHHHHHHHHhCCCchHHH
Q 021517 78 GYEELSCKVMKYAQGVPLALK 98 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai~ 98 (311)
-..+....|++.++|.+.-+.
T Consensus 198 id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 198 YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred cCHHHHHHHHHHhCCCHHHHH
Confidence 123567889999998884443
No 121
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=75.91 E-value=11 Score=37.14 Aligned_cols=86 Identities=14% Similarity=0.023 Sum_probs=46.4
Q ss_pred HHHHHhcCCCCCCCcEEEE--EeCchhH-HHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhC
Q 021517 16 IESLIGSLDWLTPVSRIII--TTRNKQV-LRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQ 91 (311)
Q Consensus 16 ~~~l~~~~~~~~~gs~Ilv--TTR~~~v-a~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~ 91 (311)
|+.+...+....+...|++ ||++... .... .....+.+.+++.+|.+.++.+.+-..... -..+....|.+.+.
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~--ls~eal~~L~~ys~ 386 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH--LAAGVEELIARYTI 386 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHCCC
Confidence 4444444443344444555 6665432 1111 122467899999999999999876322111 11344455555555
Q ss_pred CCchHHHHHHHH
Q 021517 92 GVPLALKVLGCF 103 (311)
Q Consensus 92 glPLai~~~~~~ 103 (311)
.-+-|+..++..
T Consensus 387 ~gRraln~L~~~ 398 (615)
T TIGR02903 387 EGRKAVNILADV 398 (615)
T ss_pred cHHHHHHHHHHH
Confidence 445666655544
No 122
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.77 E-value=20 Score=34.77 Aligned_cols=98 Identities=16% Similarity=0.096 Sum_probs=61.8
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEE-EEeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRII-ITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Il-vTTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|++... ..++.++..+......+.+| +||....+...+ .-...+++.+++.++....+.+.+-..+ ..
T Consensus 120 ~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~ 197 (546)
T PRK14957 120 YKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--IN 197 (546)
T ss_pred cEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CC
Confidence 458999999854 44777777766544455544 555544444332 3346899999999998887776552211 11
Q ss_pred cHHHHHHHHHHHhCCCc-hHHHHHH
Q 021517 78 GYEELSCKVMKYAQGVP-LALKVLG 101 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glP-Lai~~~~ 101 (311)
-..+....|++.++|.+ -|+..+-
T Consensus 198 ~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 198 SDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22345677888999866 4444443
No 123
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=75.51 E-value=0.22 Score=42.21 Aligned_cols=46 Identities=9% Similarity=-0.132 Sum_probs=37.7
Q ss_pred ccccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCcc
Q 021517 247 KISYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIE 292 (311)
Q Consensus 247 ~~~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~ 292 (311)
...+|++++. ..++-+++..++.+.+|.|. ++.+++|+++.+|.+.
T Consensus 77 ~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 77 IKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcch
Confidence 3467888888 88888888888888899888 7889999988888543
No 124
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=75.45 E-value=39 Score=34.65 Aligned_cols=92 Identities=11% Similarity=0.096 Sum_probs=58.8
Q ss_pred EEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEE-EEeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRII-ITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Il-vTTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
=++|||++... +.++.|+..+.+-...+.+| +||....+...+ .-...|++..++.++..+.+.+.+-..+. .-
T Consensus 122 KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv--~i 199 (824)
T PRK07764 122 KIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV--PV 199 (824)
T ss_pred eEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC--CC
Confidence 36889999865 44777777766544555555 454444554443 33468999999999988888775522111 11
Q ss_pred HHHHHHHHHHHhCCCchH
Q 021517 79 YEELSCKVMKYAQGVPLA 96 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLa 96 (311)
..+....|++.++|.+..
T Consensus 200 d~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 200 EPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred CHHHHHHHHHHcCCCHHH
Confidence 234567788899997743
No 125
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.12 E-value=22 Score=33.95 Aligned_cols=92 Identities=12% Similarity=0.051 Sum_probs=60.5
Q ss_pred EEEEEeCCCCH--HHHHHHHhcCCCCCCCcEE-EEEeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRI-IITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~I-lvTTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
-++|+|++... +.++.++..+......... +.||....+...+ .-...|.+.+++.++..+.+.+.+-..+. .-
T Consensus 123 KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~ 200 (484)
T PRK14956 123 KVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV--QY 200 (484)
T ss_pred EEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC--CC
Confidence 47999999855 4588887776543344444 4555555554443 33357999999999988888877632221 11
Q ss_pred HHHHHHHHHHHhCCCchH
Q 021517 79 YEELSCKVMKYAQGVPLA 96 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLa 96 (311)
..+....|++.++|.+--
T Consensus 201 e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 201 DQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred CHHHHHHHHHHcCChHHH
Confidence 235678899999998843
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.93 E-value=36 Score=33.48 Aligned_cols=97 Identities=12% Similarity=0.115 Sum_probs=62.2
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCc-hhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~-~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|++... +..+.+...+.+....+.+|++|.+ ..+...+ .....+.+..++.++....+.+.+...+..
T Consensus 121 ~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-- 198 (585)
T PRK14950 121 YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-- 198 (585)
T ss_pred eEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--
Confidence 457999998744 4577777666544455666655543 3443322 223578899999999988888776432221
Q ss_pred cHHHHHHHHHHHhCCCchHHHHH
Q 021517 78 GYEELSCKVMKYAQGVPLALKVL 100 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai~~~ 100 (311)
-..+.+..|++.++|.+..+...
T Consensus 199 i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 199 LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHH
Confidence 12356788999999988655443
No 127
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.51 E-value=28 Score=33.34 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=60.4
Q ss_pred EEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEe-CchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITT-RNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTT-R~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
=++|+|++... +..+.+...+.+-.+.+++|++| ....+...+ .-...+++.+++.++....+.+.+...+.. -
T Consensus 118 KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i 195 (491)
T PRK14964 118 KVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE--H 195 (491)
T ss_pred eEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC--C
Confidence 47899999754 34667776665444566555544 445554443 334688999999999999988877432221 1
Q ss_pred HHHHHHHHHHHhCCCchHH
Q 021517 79 YEELSCKVMKYAQGVPLAL 97 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai 97 (311)
..+....|++.++|.+-.+
T Consensus 196 ~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 196 DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred CHHHHHHHHHHcCCCHHHH
Confidence 2245677888898877533
No 128
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.51 E-value=23 Score=36.51 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=62.5
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEe-CchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITT-RNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTT-R~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|++... +.++.++..+.......++|++| ....+...+ .-...|++.+++.++....+.+.+-..+ ..
T Consensus 120 ~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~ 197 (944)
T PRK14949 120 FKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LP 197 (944)
T ss_pred cEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CC
Confidence 458999999855 45777777765444455555544 444444332 2346899999999999998887653211 11
Q ss_pred cHHHHHHHHHHHhCCCchHHHH
Q 021517 78 GYEELSCKVMKYAQGVPLALKV 99 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai~~ 99 (311)
-..+....|++.++|.|--+..
T Consensus 198 ~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 198 FEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred CCHHHHHHHHHHcCCCHHHHHH
Confidence 2235678899999998854433
No 129
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=74.11 E-value=21 Score=33.14 Aligned_cols=91 Identities=10% Similarity=0.184 Sum_probs=52.8
Q ss_pred EEEEeCCCCHH---HH-HHHHhcCCC-CCCCcEEEEEeCch-h--------HHHhcCCCceEEcCCCCHHHHHHHHHHhh
Q 021517 4 LIVFDDVTCFS---QI-ESLIGSLDW-LTPVSRIIITTRNK-Q--------VLRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (311)
Q Consensus 4 LlVLDdv~~~~---~~-~~l~~~~~~-~~~gs~IlvTTR~~-~--------va~~~~~~~~~~l~~L~~~~a~~Lf~~~a 69 (311)
+||+||+.... .+ +.+...+.. ...|..+|+||... . +...+.....+.+++.+.++-..++.+.+
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 78999997431 11 222222211 02345688887642 1 12222333578999999999999999887
Q ss_pred cCCCCCCccHHHHHHHHHHHhCCCchH
Q 021517 70 FKQNHPDVGYEELSCKVMKYAQGVPLA 96 (311)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glPLa 96 (311)
-..... -..++..-|++.+.|..-.
T Consensus 282 ~~~~~~--l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 282 EEEGLE--LPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHcCCC--CCHHHHHHHHHhcCCCHHH
Confidence 432221 1235667777777776543
No 130
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.70 E-value=36 Score=33.67 Aligned_cols=95 Identities=11% Similarity=0.154 Sum_probs=61.1
Q ss_pred EEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEE-EeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIII-TTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Ilv-TTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
=++|+|+|+.. +.++.++..+..-...+++|+ ||....+...+ .-...+++.+++.++....+.+.+-..+..-
T Consensus 126 KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-- 203 (618)
T PRK14951 126 KVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-- 203 (618)
T ss_pred eEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC--
Confidence 37899999865 457777777654444555554 44444444332 3346899999999999988887763322211
Q ss_pred HHHHHHHHHHHhCCCchHHHH
Q 021517 79 YEELSCKVMKYAQGVPLALKV 99 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai~~ 99 (311)
..+....|++.++|.+--+..
T Consensus 204 e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 204 EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred CHHHHHHHHHHcCCCHHHHHH
Confidence 235567788889887744433
No 131
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.54 E-value=41 Score=33.28 Aligned_cols=93 Identities=14% Similarity=0.193 Sum_probs=60.4
Q ss_pred EEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEE-EEeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRII-ITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Il-vTTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
=++|+|++... +.++.+...+..-..++.+| +||+...+...+ .....+++.+++.++....+.+.+-..+.. -
T Consensus 123 KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i 200 (614)
T PRK14971 123 KIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT--A 200 (614)
T ss_pred EEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC--C
Confidence 37899998765 34677776665444556554 455555555443 334689999999999998888766332211 1
Q ss_pred HHHHHHHHHHHhCCCchHH
Q 021517 79 YEELSCKVMKYAQGVPLAL 97 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai 97 (311)
-.+.+..|++.++|..--+
T Consensus 201 ~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 201 EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CHHHHHHHHHHcCCCHHHH
Confidence 2246788899999976543
No 132
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=73.17 E-value=3.7 Score=34.44 Aligned_cols=42 Identities=26% Similarity=0.390 Sum_probs=27.0
Q ss_pred EEEEeCCCCH---HHHHHHHhcCCCCCCCcEEEEEeCchhHHHhc
Q 021517 4 LIVFDDVTCF---SQIESLIGSLDWLTPVSRIIITTRNKQVLRNW 45 (311)
Q Consensus 4 LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IlvTTR~~~va~~~ 45 (311)
++|||||... .....+...+....+++.+||||-.+.+...+
T Consensus 161 ~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 161 FLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp EEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6899999854 33444444444445678999999999887765
No 133
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=73.12 E-value=33 Score=33.21 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=60.8
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCch-hHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~-~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|++... +..+.++..+....+.+++|++|.+. .+...+ .-...+++.+++.++....+...+-..+..
T Consensus 118 ~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~-- 195 (535)
T PRK08451 118 FKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS-- 195 (535)
T ss_pred eEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC--
Confidence 347899999754 34666666664444566666666553 222222 223588999999999988887766332211
Q ss_pred cHHHHHHHHHHHhCCCchHHHH
Q 021517 78 GYEELSCKVMKYAQGVPLALKV 99 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai~~ 99 (311)
-..+.+..|++.++|.+--+..
T Consensus 196 i~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 196 YEPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred CCHHHHHHHHHHcCCcHHHHHH
Confidence 1235677899999998854443
No 134
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=72.69 E-value=15 Score=34.03 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=59.5
Q ss_pred CeEEEEEeCCCC--HHHHHHHHhcCCCCCCCcEEEE--EeCchhHHH---hcCCCceEEcCCCCHHHHHHHHHHhhcCCC
Q 021517 1 MKVLIVFDDVTC--FSQIESLIGSLDWLTPVSRIII--TTRNKQVLR---NWGVRKIYEMKALEYHHAIRLFSRHAFKQN 73 (311)
Q Consensus 1 kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~Ilv--TTR~~~va~---~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 73 (311)
+|.+|++|.|.. ..+-+.+++.. ..|.-|+| ||-+..-.- ..+-..++++++|+.+|-.+++.+-+-...
T Consensus 104 r~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred CceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhh
Confidence 578999999974 44566777665 36776666 555543211 113346999999999999999988442211
Q ss_pred CC----Cc-cHHHHHHHHHHHhCCCchHH
Q 021517 74 HP----DV-GYEELSCKVMKYAQGVPLAL 97 (311)
Q Consensus 74 ~~----~~-~~~~~~~~i~~~c~glPLai 97 (311)
.. .. -..+.-.-++..++|.--+.
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 11 11 12345667788888875443
No 135
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=72.45 E-value=77 Score=28.85 Aligned_cols=87 Identities=15% Similarity=0.222 Sum_probs=56.9
Q ss_pred EEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCc-hhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCccH
Q 021517 4 LIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGY 79 (311)
Q Consensus 4 LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~-~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~ 79 (311)
++|+|+++.. +..+.++..+..-.+++.+|++|.+ ..+..++ +-...+.+.+++.++..+.+.... . ++
T Consensus 135 V~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~-~~-- 207 (342)
T PRK06964 135 VVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V-AD-- 207 (342)
T ss_pred EEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-Ch--
Confidence 6788999855 4577777776555566655555544 5555443 334689999999999998887641 1 11
Q ss_pred HHHHHHHHHHhCCCchHHHHH
Q 021517 80 EELSCKVMKYAQGVPLALKVL 100 (311)
Q Consensus 80 ~~~~~~i~~~c~glPLai~~~ 100 (311)
...++..++|.|.....+
T Consensus 208 ---~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 208 ---ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ---HHHHHHHcCCCHHHHHHH
Confidence 123577889999754433
No 136
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=72.12 E-value=39 Score=34.03 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=60.7
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcE-EEEEeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSR-IIITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~-IlvTTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|++... ..+..++..+......+. |++||+...+...+ .....+++.+++.++....+...+-..+..
T Consensus 119 ~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~-- 196 (725)
T PRK07133 119 YKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS-- 196 (725)
T ss_pred CEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC--
Confidence 347899998754 457777766544334444 55665555554433 334589999999999988887765322211
Q ss_pred cHHHHHHHHHHHhCCCch-HHHHH
Q 021517 78 GYEELSCKVMKYAQGVPL-ALKVL 100 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPL-ai~~~ 100 (311)
-..+.+..|++.++|.+- |+..+
T Consensus 197 id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 197 YEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 112457788899988664 44433
No 137
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=71.56 E-value=58 Score=30.89 Aligned_cols=98 Identities=14% Similarity=0.125 Sum_probs=59.5
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEe-CchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITT-RNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTT-R~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|++... +..+.+...+.+...++.+|++| +...+...+ .....+++.++++++....+.+.+-..+..
T Consensus 122 ~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-- 199 (451)
T PRK06305 122 YKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-- 199 (451)
T ss_pred CEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC--
Confidence 447899998754 34556666655434455566555 333333322 233578999999999988887765322111
Q ss_pred cHHHHHHHHHHHhCCCc-hHHHHHH
Q 021517 78 GYEELSCKVMKYAQGVP-LALKVLG 101 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glP-Lai~~~~ 101 (311)
-..+.+..|++.++|.+ .|+..+-
T Consensus 200 i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 200 TSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 12356778889999866 4444433
No 138
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.54 E-value=32 Score=34.03 Aligned_cols=96 Identities=14% Similarity=0.123 Sum_probs=60.1
Q ss_pred eEEEEEeCCCCHH--HHHHHHhcCCCCCCCcEEE-EEeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCFS--QIESLIGSLDWLTPVSRII-ITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~Il-vTTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|+++... ..+.+...+..-...+.+| +|++...+...+ .....+++.+++.++....+.+.+-..+..
T Consensus 128 ~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-- 205 (620)
T PRK14954 128 YRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-- 205 (620)
T ss_pred CEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC--
Confidence 3478999987653 4667776665434455544 555545554433 334689999999999888877665322211
Q ss_pred cHHHHHHHHHHHhCCCch-HHHH
Q 021517 78 GYEELSCKVMKYAQGVPL-ALKV 99 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPL-ai~~ 99 (311)
-..+.+..|++.++|..- |+..
T Consensus 206 I~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 206 IDADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHH
Confidence 123567889999999554 4443
No 139
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=71.14 E-value=14 Score=32.51 Aligned_cols=67 Identities=9% Similarity=0.083 Sum_probs=43.6
Q ss_pred EEEEEeCCCCH-----------HHHHHHHhcCCCCCCCcEEEEEeCchhHHHhc--------CCCceEEcCCCCHHHHHH
Q 021517 3 VLIVFDDVTCF-----------SQIESLIGSLDWLTPVSRIIITTRNKQVLRNW--------GVRKIYEMKALEYHHAIR 63 (311)
Q Consensus 3 ~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~IlvTTR~~~va~~~--------~~~~~~~l~~L~~~~a~~ 63 (311)
-+|++|++... +.++.+...+.....+.+||++|......... .....+++++++.+|-.+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 46889999632 23556666665445566777776544322211 123578999999999999
Q ss_pred HHHHhh
Q 021517 64 LFSRHA 69 (311)
Q Consensus 64 Lf~~~a 69 (311)
++...+
T Consensus 203 I~~~~l 208 (284)
T TIGR02880 203 IAGLML 208 (284)
T ss_pred HHHHHH
Confidence 988776
No 140
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=70.40 E-value=28 Score=32.88 Aligned_cols=114 Identities=12% Similarity=0.156 Sum_probs=64.2
Q ss_pred EEEEeCCCCHH----HHHHHHhcCCC-CCCCcEEEEEeCchh---------HHHhcCCCceEEcCCCCHHHHHHHHHHhh
Q 021517 4 LIVFDDVTCFS----QIESLIGSLDW-LTPVSRIIITTRNKQ---------VLRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (311)
Q Consensus 4 LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IlvTTR~~~---------va~~~~~~~~~~l~~L~~~~a~~Lf~~~a 69 (311)
+||+||+.... .-+.+...+.. ...|..||+||.... +...+.....+++++.+.++-..++.+.+
T Consensus 214 lLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 214 VLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 79999996421 11222221110 013455888886531 12233444689999999999999999987
Q ss_pred cCCCCCCccHHHHHHHHHHHhCCCchHHH----HHHHHh--ccc--cHHHHHHHHHHH
Q 021517 70 FKQNHPDVGYEELSCKVMKYAQGVPLALK----VLGCFL--HKR--EKEVWESATDKL 119 (311)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glPLai~----~~~~~L--~~~--~~~~w~~~~~~l 119 (311)
-.... .-..++..-|++.+.|..-.+. .+..+- .++ +....+.+++.+
T Consensus 294 ~~~~~--~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 294 EEEGI--DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHcCC--CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 43221 1223567778888887655332 222221 122 556666666654
No 141
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=70.26 E-value=34 Score=33.69 Aligned_cols=88 Identities=9% Similarity=0.194 Sum_probs=51.6
Q ss_pred EEEEeCCCCH---HHHH-HHHhcCCC-CCCCcEEEEEeCch---------hHHHhcCCCceEEcCCCCHHHHHHHHHHhh
Q 021517 4 LIVFDDVTCF---SQIE-SLIGSLDW-LTPVSRIIITTRNK---------QVLRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (311)
Q Consensus 4 LlVLDdv~~~---~~~~-~l~~~~~~-~~~gs~IlvTTR~~---------~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a 69 (311)
+|||||+... +.|+ .+...+.. ...|..|||||... .+...+...-++.++..+.+.-.+++.+++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 7999999743 2222 22222211 12355688888762 233334555689999999999999999887
Q ss_pred cCCCCCCccHHHHHHHHHHHhCCC
Q 021517 70 FKQNHPDVGYEELSCKVMKYAQGV 93 (311)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~gl 93 (311)
-...-. --.++..-|++.+.+.
T Consensus 460 ~~r~l~--l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 460 VQEQLN--APPEVLEFIASRISRN 481 (617)
T ss_pred HhcCCC--CCHHHHHHHHHhccCC
Confidence 433211 1134555555555443
No 142
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=69.56 E-value=15 Score=32.70 Aligned_cols=89 Identities=15% Similarity=0.229 Sum_probs=59.5
Q ss_pred EEEEeCCCCH--HHHHHHHhcCCCCCCCcE-EEEEeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCccH
Q 021517 4 LIVFDDVTCF--SQIESLIGSLDWLTPVSR-IIITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGY 79 (311)
Q Consensus 4 LlVLDdv~~~--~~~~~l~~~~~~~~~gs~-IlvTTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~ 79 (311)
.+|||+++.. +.|..+...+.+....++ |+||+--..+...+ .-...+..++|..++...-+...+-..+-+- .
T Consensus 132 iiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~--d 209 (346)
T KOG0989|consen 132 IIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI--D 209 (346)
T ss_pred EEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC--C
Confidence 5789999876 459999888776555565 55555444443332 2234789999999999999888874333221 1
Q ss_pred HHHHHHHHHHhCCCc
Q 021517 80 EELSCKVMKYAQGVP 94 (311)
Q Consensus 80 ~~~~~~i~~~c~glP 94 (311)
.+..+.|++.++|.-
T Consensus 210 ~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 210 DDALKLIAKISDGDL 224 (346)
T ss_pred HHHHHHHHHHcCCcH
Confidence 255677888888754
No 143
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=69.42 E-value=27 Score=34.67 Aligned_cols=96 Identities=11% Similarity=0.066 Sum_probs=60.9
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcE-EEEEeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSR-IIITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~-IlvTTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|++... ...+.++..+..-....+ |++||....+...+ .-...+.+.+++.++....+.+.+-..+. .
T Consensus 120 ~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i--~ 197 (647)
T PRK07994 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI--P 197 (647)
T ss_pred CEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC--C
Confidence 347899999854 447777666544334444 45555555554332 33468999999999999888876522111 1
Q ss_pred cHHHHHHHHHHHhCCCchHHHH
Q 021517 78 GYEELSCKVMKYAQGVPLALKV 99 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai~~ 99 (311)
...+....|++.++|.+-.+..
T Consensus 198 ~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 198 FEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred CCHHHHHHHHHHcCCCHHHHHH
Confidence 1234567789999998754433
No 144
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.04 E-value=3.3 Score=22.38 Aligned_cols=12 Identities=8% Similarity=0.346 Sum_probs=5.5
Q ss_pred CceEEEcCCCCc
Q 021517 280 KLVLVEVPDSDI 291 (311)
Q Consensus 280 ~L~~L~L~~~~i 291 (311)
+|++|||++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 344455544433
No 145
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=68.86 E-value=49 Score=29.86 Aligned_cols=86 Identities=10% Similarity=0.178 Sum_probs=57.6
Q ss_pred EEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEEEeCch-hHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCccH
Q 021517 4 LIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGY 79 (311)
Q Consensus 4 LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~-~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~ 79 (311)
.+|+|+++... ..+.++..+..-.+++.+|++|.+. .+...+ +-...+.+.+++.++..+.+.... + . +
T Consensus 110 V~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~-~--~--~-- 182 (325)
T PRK06871 110 VVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQS-S--A--E-- 182 (325)
T ss_pred EEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHh-c--c--C--
Confidence 57799998654 4666666665545666666666654 454443 334689999999999998887654 1 1 1
Q ss_pred HHHHHHHHHHhCCCchH
Q 021517 80 EELSCKVMKYAQGVPLA 96 (311)
Q Consensus 80 ~~~~~~i~~~c~glPLa 96 (311)
...+...+..++|.|..
T Consensus 183 ~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 183 ISEILTALRINYGRPLL 199 (325)
T ss_pred hHHHHHHHHHcCCCHHH
Confidence 12355677889999963
No 146
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=68.18 E-value=8 Score=30.93 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=25.2
Q ss_pred EEEEeCCCCHH-----HHHHHHhcCCCCCCCcEEEEEeCchh
Q 021517 4 LIVFDDVTCFS-----QIESLIGSLDWLTPVSRIIITTRNKQ 40 (311)
Q Consensus 4 LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IlvTTR~~~ 40 (311)
|||||.+-..- ..+.+...+.+...+.-||+|.|+..
T Consensus 98 LlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 98 LVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred EEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 79999996542 13444444444456778999999964
No 147
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=67.94 E-value=70 Score=28.35 Aligned_cols=65 Identities=14% Similarity=0.224 Sum_probs=37.7
Q ss_pred EEEEEeCCCCH---HHHHHHHhcCCCCCCCcEEEEEeCchhHH-Hhc-CCCceEEcCCCCHHHHHHHHHH
Q 021517 3 VLIVFDDVTCF---SQIESLIGSLDWLTPVSRIIITTRNKQVL-RNW-GVRKIYEMKALEYHHAIRLFSR 67 (311)
Q Consensus 3 ~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IlvTTR~~~va-~~~-~~~~~~~l~~L~~~~a~~Lf~~ 67 (311)
-++|+||+... +..+.+...+.....++++|+||...... ... +....+.++..+.++..+++..
T Consensus 102 ~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 102 KVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 46899999755 22333333333334677888888654311 111 2224677777888887766554
No 148
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=66.90 E-value=34 Score=33.75 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=60.6
Q ss_pred EEEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEE-EeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIII-TTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~Ilv-TTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
=++|+|++.... ..+.+...+.+-...+.+|+ ||....+...+ .-...+++..++.++....+.+.+-..+.. -
T Consensus 134 KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i 211 (598)
T PRK09111 134 KVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--V 211 (598)
T ss_pred EEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--C
Confidence 468999997553 46666666544445566554 54544544333 233588999999999999888876322211 1
Q ss_pred HHHHHHHHHHHhCCCchHHHH
Q 021517 79 YEELSCKVMKYAQGVPLALKV 99 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai~~ 99 (311)
-.+....|++.++|.+.-+..
T Consensus 212 ~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 212 EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred CHHHHHHHHHHcCCCHHHHHH
Confidence 125677888999998865543
No 149
>PRK04132 replication factor C small subunit; Provisional
Probab=66.72 E-value=77 Score=32.67 Aligned_cols=94 Identities=13% Similarity=0.166 Sum_probs=61.1
Q ss_pred EEEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEEEeCc-hhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~-~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
-++|+|+++... ....+...+......+++|.+|.+ ..+...+ +-...+.+.+++.++-...+.+.+-..+-. -
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i 709 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--L 709 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--C
Confidence 589999998654 566666666543445555555544 4443333 334689999999999988887765321111 1
Q ss_pred HHHHHHHHHHHhCCCchHHH
Q 021517 79 YEELSCKVMKYAQGVPLALK 98 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai~ 98 (311)
..+....|++.|+|.+-.+.
T Consensus 710 ~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 710 TEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred CHHHHHHHHHHcCCCHHHHH
Confidence 13567889999999885443
No 150
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=66.39 E-value=23 Score=34.07 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=60.5
Q ss_pred EEEEeCCCCHHHHHHHHhcC---------------CCCCCCcEEEEEeCchhHHHhcCC----CceEEcCCCCH-HHHHH
Q 021517 4 LIVFDDVTCFSQIESLIGSL---------------DWLTPVSRIIITTRNKQVLRNWGV----RKIYEMKALEY-HHAIR 63 (311)
Q Consensus 4 LlVLDdv~~~~~~~~l~~~~---------------~~~~~gs~IlvTTR~~~va~~~~~----~~~~~l~~L~~-~~a~~ 63 (311)
.||+||+...-+|-.+.|.+ |..++.--|+-||....+...|+. ...|.++.++. ++..+
T Consensus 601 iivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~ 680 (744)
T KOG0741|consen 601 IIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLE 680 (744)
T ss_pred EEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHH
Confidence 58999998766655444332 323334456778888888888753 45889998887 77777
Q ss_pred HHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHh
Q 021517 64 LFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKVLGCFL 104 (311)
Q Consensus 64 Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 104 (311)
.++..- .-.+++.+.++.+...+| +-..|+.+-.++
T Consensus 681 vl~~~n---~fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 681 VLEELN---IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred HHHHcc---CCCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 776543 122445556677777776 333444444444
No 151
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=65.97 E-value=39 Score=31.50 Aligned_cols=116 Identities=16% Similarity=0.232 Sum_probs=64.0
Q ss_pred EEEEeCCCCHH---HH-HHHHhcCCC-CCCCcEEEEEeCc---------hhHHHhcCCCceEEcCCCCHHHHHHHHHHhh
Q 021517 4 LIVFDDVTCFS---QI-ESLIGSLDW-LTPVSRIIITTRN---------KQVLRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (311)
Q Consensus 4 LlVLDdv~~~~---~~-~~l~~~~~~-~~~gs~IlvTTR~---------~~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a 69 (311)
++++||++-.. .| +.+...++. ...|..||+|++. ..+...++..-++.+.+++.+....++.+.+
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 78999997422 11 122222211 1234489999954 2334444556789999999999999999977
Q ss_pred cCCC-CCC-ccHHHHHHHHHHHhCCCchHHHHHHHHhc--cc--cHHHHHHHHHHH
Q 021517 70 FKQN-HPD-VGYEELSCKVMKYAQGVPLALKVLGCFLH--KR--EKEVWESATDKL 119 (311)
Q Consensus 70 ~~~~-~~~-~~~~~~~~~i~~~c~glPLai~~~~~~L~--~~--~~~~w~~~~~~l 119 (311)
-..+ ..+ +...-++..+-....-+.-|+..+..+-. ++ +...-++++..+
T Consensus 258 ~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~ 313 (408)
T COG0593 258 EDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDL 313 (408)
T ss_pred HhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHh
Confidence 4333 222 22334555554444445555544443332 11 455555555543
No 152
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=65.39 E-value=50 Score=32.53 Aligned_cols=97 Identities=19% Similarity=0.172 Sum_probs=60.3
Q ss_pred EEEEeCCCCH--HHHHHHHhcCCCCCCCcEEE-EEeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCccH
Q 021517 4 LIVFDDVTCF--SQIESLIGSLDWLTPVSRII-ITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGY 79 (311)
Q Consensus 4 LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Il-vTTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~ 79 (311)
++|+|++... ..++.+...+......+.+| +|+....+...+ .....+++.++++++....+...+-..+.. -.
T Consensus 122 VIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is 199 (605)
T PRK05896 122 VYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK--IE 199 (605)
T ss_pred EEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC--CC
Confidence 6899999753 45677776654333455554 454444443332 334588999999999998888766332211 11
Q ss_pred HHHHHHHHHHhCCCch-HHHHHHH
Q 021517 80 EELSCKVMKYAQGVPL-ALKVLGC 102 (311)
Q Consensus 80 ~~~~~~i~~~c~glPL-ai~~~~~ 102 (311)
.+.+..+++.++|.+- |+..+-.
T Consensus 200 ~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 200 DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3557788999999664 4444443
No 153
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.36 E-value=43 Score=32.44 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=59.5
Q ss_pred eEEEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEEEeCc-hhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~-~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|++.... ..+.++..+......+.+|++|.+ +.+...+ .-...+++.+++.++....+.+.+-..+..
T Consensus 120 ~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~-- 197 (527)
T PRK14969 120 FKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP-- 197 (527)
T ss_pred ceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--
Confidence 4579999998654 466777666544455555555543 3333221 123578999999999988887765322211
Q ss_pred cHHHHHHHHHHHhCCCch-HHHHH
Q 021517 78 GYEELSCKVMKYAQGVPL-ALKVL 100 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPL-ai~~~ 100 (311)
...+....|++.++|.+- |+..+
T Consensus 198 ~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 198 FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 123456778889999774 44443
No 154
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=65.35 E-value=0.67 Score=39.41 Aligned_cols=52 Identities=12% Similarity=-0.004 Sum_probs=37.0
Q ss_pred CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCG 308 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~ 308 (311)
..|--||++.+.+..+|+.+ ++..++-+++-.++..++|.+.+++++++.++
T Consensus 65 t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 65 TRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred HHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 45556777777777777777 57777777776677777777777777777654
No 155
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.47 E-value=1.8 Score=38.32 Aligned_cols=46 Identities=20% Similarity=0.173 Sum_probs=34.4
Q ss_pred CceeEEeeeCCCCCCCCC--CC--CCCCceEEEcCCC----CccccccccccCc
Q 021517 257 AEVKYLHWYGYPLKSLPS--NL--SAKKLVLVEVPDS----DIERLWHCVKVCI 302 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~--~i--~L~~L~~L~L~~~----~i~~LP~~i~~L~ 302 (311)
.++|-|||.+|.|..-.+ +| +|.+|++|+|+.+ .|..+|--+.+|+
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 789999999998765544 23 6999999999987 4777774344443
No 156
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=63.40 E-value=54 Score=30.93 Aligned_cols=89 Identities=12% Similarity=0.145 Sum_probs=50.7
Q ss_pred EEEEeCCCCH---HHH-HHHHhcCCC-CCCCcEEEEEeC-chhHH--------HhcCCCceEEcCCCCHHHHHHHHHHhh
Q 021517 4 LIVFDDVTCF---SQI-ESLIGSLDW-LTPVSRIIITTR-NKQVL--------RNWGVRKIYEMKALEYHHAIRLFSRHA 69 (311)
Q Consensus 4 LlVLDdv~~~---~~~-~~l~~~~~~-~~~gs~IlvTTR-~~~va--------~~~~~~~~~~l~~L~~~~a~~Lf~~~a 69 (311)
+|++||+... ..+ +.+...+.. ...|..||+||. ...-. ..+....++.+++.+.+.-.+++.+.+
T Consensus 197 vLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~ 276 (440)
T PRK14088 197 VLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKML 276 (440)
T ss_pred EEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHH
Confidence 7999999743 111 122211110 013456888885 32211 122334588999999999999999887
Q ss_pred cCCCCCCccHHHHHHHHHHHhCCCc
Q 021517 70 FKQNHPDVGYEELSCKVMKYAQGVP 94 (311)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glP 94 (311)
-..... --.++..-|++.+.|.-
T Consensus 277 ~~~~~~--l~~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 277 EIEHGE--LPEEVLNFVAENVDDNL 299 (440)
T ss_pred HhcCCC--CCHHHHHHHHhccccCH
Confidence 432211 12356777777776643
No 157
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.75 E-value=93 Score=29.84 Aligned_cols=97 Identities=11% Similarity=0.088 Sum_probs=58.6
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEE-EeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIII-TTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Ilv-TTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|+++.. +..+.+...+....+...+|+ ||+...+...+ .....+.+.+++.++....+...+-..+. .
T Consensus 120 ~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~ 197 (486)
T PRK14953 120 YKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--E 197 (486)
T ss_pred eeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--C
Confidence 448899998754 446666666554334455544 44444443322 22357899999999988888776532221 1
Q ss_pred cHHHHHHHHHHHhCCCchHHHHH
Q 021517 78 GYEELSCKVMKYAQGVPLALKVL 100 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai~~~ 100 (311)
--.+.+..|++.++|.+-.+...
T Consensus 198 id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 198 YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHH
Confidence 12255677888888876544433
No 158
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=62.54 E-value=57 Score=29.56 Aligned_cols=88 Identities=13% Similarity=0.203 Sum_probs=57.8
Q ss_pred EEEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEEEeCc-hhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~-~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
=.+|+|+++... .-+.++..+..-..++.+|++|.+ ..+..++ +-...+.+.+++.+++.+.+.... + .+
T Consensus 110 kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~---~~-- 183 (334)
T PRK07993 110 KVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T---MS-- 183 (334)
T ss_pred eEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C---CC--
Confidence 367889887553 466666666544566666666655 4555453 334578999999999988876542 1 11
Q ss_pred HHHHHHHHHHHhCCCchHH
Q 021517 79 YEELSCKVMKYAQGVPLAL 97 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai 97 (311)
.+.+..++..++|.|...
T Consensus 184 -~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 184 -QDALLAALRLSAGAPGAA 201 (334)
T ss_pred -HHHHHHHHHHcCCCHHHH
Confidence 233677899999999643
No 159
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.38 E-value=81 Score=31.02 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=61.1
Q ss_pred EEEEEeCCCCH--HHHHHHHhcCCCCCCCcE-EEEEeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSR-IIITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~-IlvTTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
=++|+|++... +..+.++..+........ |++||....+...+ .-...+++.+++.++..+.+.+.+-..+..-
T Consensus 120 KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-- 197 (584)
T PRK14952 120 RIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-- 197 (584)
T ss_pred eEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC--
Confidence 37899998744 457777766654444554 44555555554443 3346899999999999888877653322111
Q ss_pred HHHHHHHHHHHhCCCch-HHHHHHH
Q 021517 79 YEELSCKVMKYAQGVPL-ALKVLGC 102 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPL-ai~~~~~ 102 (311)
..+....|++.++|.+- |+..+-.
T Consensus 198 ~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 198 DDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 12456777888888763 4444433
No 160
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=61.23 E-value=5.2 Score=21.03 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=9.7
Q ss_pred CCceEEEcCCC-Ccc
Q 021517 279 KKLVLVEVPDS-DIE 292 (311)
Q Consensus 279 ~~L~~L~L~~~-~i~ 292 (311)
.+|+.|+|++| +|+
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 46778888877 454
No 161
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.95 E-value=0.89 Score=39.73 Aligned_cols=51 Identities=20% Similarity=0.051 Sum_probs=32.7
Q ss_pred CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCcccccc--ccccCcccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWH--CVKVCISYYTC 307 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~--~i~~L~~L~~l 307 (311)
+.|.||.|+-|.|++|-+--...+|+.|.|+.|.|..|-. -+.+|++|++|
T Consensus 41 p~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred ccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 6777777777777777544356777777777776655542 24455556554
No 162
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=60.85 E-value=2.2 Score=38.42 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=25.0
Q ss_pred CCC-CceeEEeeeCCCCC-----CCCCCC-CCCCceEEEcCCCCcc
Q 021517 254 PGF-AEVKYLHWYGYPLK-----SLPSNL-SAKKLVLVEVPDSDIE 292 (311)
Q Consensus 254 ~~~-~~Lr~L~l~~~~i~-----~lP~~i-~L~~L~~L~L~~~~i~ 292 (311)
+.. +|||+|||+.|-++ .+-+.+ .+++|+.|++++|.++
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 445 88888888877543 233333 3667788888777654
No 163
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=60.28 E-value=78 Score=30.98 Aligned_cols=94 Identities=11% Similarity=0.143 Sum_probs=59.7
Q ss_pred EEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEe-CchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITT-RNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTT-R~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
=++|+|++... ..++.+...+......+.+|.+| ....+...+ .....++..+++.++-...+...+...+.. -
T Consensus 121 KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--i 198 (563)
T PRK06647 121 RVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--Y 198 (563)
T ss_pred EEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--C
Confidence 47899998755 34777777766444556555555 434443332 223578999999999988887766332211 1
Q ss_pred HHHHHHHHHHHhCCCchHHH
Q 021517 79 YEELSCKVMKYAQGVPLALK 98 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai~ 98 (311)
-.+.+..|++.++|.+-.+.
T Consensus 199 d~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 199 EDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred CHHHHHHHHHHcCCCHHHHH
Confidence 23566778888999775443
No 164
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=59.79 E-value=65 Score=25.44 Aligned_cols=95 Identities=16% Similarity=0.092 Sum_probs=49.1
Q ss_pred eEEEEEeCC------CCHHHHHHHHhcCCCCCCCcEEEEEeC-chhH----HHhcC-CCceEEcCCCCHHHHHHHHHHhh
Q 021517 2 KVLIVFDDV------TCFSQIESLIGSLDWLTPVSRIIITTR-NKQV----LRNWG-VRKIYEMKALEYHHAIRLFSRHA 69 (311)
Q Consensus 2 r~LlVLDdv------~~~~~~~~l~~~~~~~~~gs~IlvTTR-~~~v----a~~~~-~~~~~~l~~L~~~~a~~Lf~~~a 69 (311)
+-++|+.+. +..+.++.+...+.+..+++.+|+.+. ..+. ..... ....+...+++..+........+
T Consensus 58 ~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~ 137 (172)
T PF06144_consen 58 KKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERA 137 (172)
T ss_dssp EEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHH
T ss_pred CeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHH
Confidence 446677776 345668888888877678888888887 2221 22222 22456777777777777776666
Q ss_pred cCCCCCCccHHHHHHHHHHHhCCCchHHH
Q 021517 70 FKQNHPDVGYEELSCKVMKYAQGVPLALK 98 (311)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glPLai~ 98 (311)
-..+- .-..+.+..+++..++.+.++.
T Consensus 138 ~~~g~--~i~~~a~~~L~~~~~~d~~~l~ 164 (172)
T PF06144_consen 138 KKNGL--KIDPDAAQYLIERVGNDLSLLQ 164 (172)
T ss_dssp HHTT---EE-HHHHHHHHHHHTT-HHHHH
T ss_pred HHcCC--CCCHHHHHHHHHHhChHHHHHH
Confidence 22211 1123456666677666665543
No 165
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=59.71 E-value=50 Score=31.22 Aligned_cols=87 Identities=13% Similarity=0.112 Sum_probs=48.4
Q ss_pred EEEEeCCCCHHH----HHHHHhcCCC-CCCCcEEEEEeCch---------hHHHhcCCCceEEcCCCCHHHHHHHHHHhh
Q 021517 4 LIVFDDVTCFSQ----IESLIGSLDW-LTPVSRIIITTRNK---------QVLRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (311)
Q Consensus 4 LlVLDdv~~~~~----~~~l~~~~~~-~~~gs~IlvTTR~~---------~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a 69 (311)
+|++||+..... -+.+...+.. ...|..||+||... .+...+.....+.+.+++.++-..++.+++
T Consensus 205 vLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 205 ALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred EEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 789999865421 1222222110 01355788888542 222233444688999999999999998887
Q ss_pred cCCCCCCccHHHHHHHHHHHhCC
Q 021517 70 FKQNHPDVGYEELSCKVMKYAQG 92 (311)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~g 92 (311)
-..+-. --.++..-|++.+.|
T Consensus 285 ~~~~~~--l~~evl~~la~~~~~ 305 (445)
T PRK12422 285 EALSIR--IEETALDFLIEALSS 305 (445)
T ss_pred HHcCCC--CCHHHHHHHHHhcCC
Confidence 332211 112444445555543
No 166
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.77 E-value=83 Score=30.37 Aligned_cols=94 Identities=11% Similarity=0.054 Sum_probs=56.6
Q ss_pred EEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEe-CchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITT-RNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTT-R~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
-++|+|+|... +..+.++..+......+++|++| ....+...+ .-...+++.+++.++....+.+.+-..+..-
T Consensus 121 kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-- 198 (509)
T PRK14958 121 KVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-- 198 (509)
T ss_pred EEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--
Confidence 46889999864 45666666665444556655554 443443332 2235788999999988776665552222111
Q ss_pred HHHHHHHHHHHhCCCchHHH
Q 021517 79 YEELSCKVMKYAQGVPLALK 98 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai~ 98 (311)
..+....|++.++|.+--+.
T Consensus 199 ~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 199 ENAALDLLARAANGSVRDAL 218 (509)
T ss_pred CHHHHHHHHHHcCCcHHHHH
Confidence 12446678888888775443
No 167
>CHL00181 cbbX CbbX; Provisional
Probab=57.44 E-value=1.1e+02 Score=27.12 Aligned_cols=67 Identities=7% Similarity=0.081 Sum_probs=44.1
Q ss_pred EEEEeCCCC-----------HHHHHHHHhcCCCCCCCcEEEEEeCchhHHHhc--------CCCceEEcCCCCHHHHHHH
Q 021517 4 LIVFDDVTC-----------FSQIESLIGSLDWLTPVSRIIITTRNKQVLRNW--------GVRKIYEMKALEYHHAIRL 64 (311)
Q Consensus 4 LlVLDdv~~-----------~~~~~~l~~~~~~~~~gs~IlvTTR~~~va~~~--------~~~~~~~l~~L~~~~a~~L 64 (311)
+|++|++.. .+..+.+...+.....+.+||+++....+.... .....+..++++.+|..++
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 689999964 233455555555444566777777654432211 2235789999999999999
Q ss_pred HHHhhc
Q 021517 65 FSRHAF 70 (311)
Q Consensus 65 f~~~a~ 70 (311)
+...+-
T Consensus 205 ~~~~l~ 210 (287)
T CHL00181 205 AKIMLE 210 (287)
T ss_pred HHHHHH
Confidence 888763
No 168
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.17 E-value=3 Score=34.67 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=7.1
Q ss_pred CCCceEEEcCCC-Ccc
Q 021517 278 AKKLVLVEVPDS-DIE 292 (311)
Q Consensus 278 L~~L~~L~L~~~-~i~ 292 (311)
..+||.|+|++| +|+
T Consensus 150 ~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRIT 165 (221)
T ss_pred ccchheeeccCCCeec
Confidence 344555555544 444
No 169
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=56.75 E-value=41 Score=29.04 Aligned_cols=67 Identities=7% Similarity=0.088 Sum_probs=41.3
Q ss_pred EEEEeCCCC----------HHHHHHHHhcCCCCCCCcEEEEEeCchhHHH------hc--CCCceEEcCCCCHHHHHHHH
Q 021517 4 LIVFDDVTC----------FSQIESLIGSLDWLTPVSRIIITTRNKQVLR------NW--GVRKIYEMKALEYHHAIRLF 65 (311)
Q Consensus 4 LlVLDdv~~----------~~~~~~l~~~~~~~~~gs~IlvTTR~~~va~------~~--~~~~~~~l~~L~~~~a~~Lf 65 (311)
+|++|++.. .+..+.+...+........+++++....... .. .....+.+++++.++-.+++
T Consensus 108 VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il 187 (261)
T TIGR02881 108 VLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIA 187 (261)
T ss_pred EEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHH
Confidence 689999975 2345666665544333445556654433211 01 12346889999999999999
Q ss_pred HHhhc
Q 021517 66 SRHAF 70 (311)
Q Consensus 66 ~~~a~ 70 (311)
.+.+-
T Consensus 188 ~~~~~ 192 (261)
T TIGR02881 188 ERMVK 192 (261)
T ss_pred HHHHH
Confidence 87763
No 170
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=56.66 E-value=77 Score=28.56 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=43.8
Q ss_pred EEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEEEeCch-hHHHhc-CCCceEEcCCCCHHHHHHHHHHh
Q 021517 4 LIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRH 68 (311)
Q Consensus 4 LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~-~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~ 68 (311)
++|+|++.... ..+.++..+.+-..++.+|++|.+. .+...+ .-...+++.+++.++..+.+...
T Consensus 113 vviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 113 VYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 68889987543 3666666665545677777777654 333333 33468999999999998888653
No 171
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=56.43 E-value=18 Score=27.15 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=23.7
Q ss_pred eEEEEEeCCCCH--H---HHHHHHhcCCCC---CCCcEEEEEeCchh
Q 021517 2 KVLIVFDDVTCF--S---QIESLIGSLDWL---TPVSRIIITTRNKQ 40 (311)
Q Consensus 2 r~LlVLDdv~~~--~---~~~~l~~~~~~~---~~gs~IlvTTR~~~ 40 (311)
..++|+||++.. . .+.......... ..+..||+||....
T Consensus 85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 468999999964 2 233333333221 35778888887654
No 172
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.01 E-value=1.2e+02 Score=30.01 Aligned_cols=96 Identities=18% Similarity=0.203 Sum_probs=59.1
Q ss_pred EEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEE-EeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIII-TTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Ilv-TTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
-++|+|++... +.++.++..+..-...+.+|+ |+....+...+ .....+++..++.++....+.+.+-..+..-
T Consensus 123 KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i-- 200 (620)
T PRK14948 123 KVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI-- 200 (620)
T ss_pred eEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC--
Confidence 47899999854 457777776654334454444 44433443332 2335788889999988887777663322111
Q ss_pred HHHHHHHHHHHhCCCchHHHHH
Q 021517 79 YEELSCKVMKYAQGVPLALKVL 100 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai~~~ 100 (311)
-.+.+..|++.++|.+..+...
T Consensus 201 s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 201 EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred CHHHHHHHHHHcCCCHHHHHHH
Confidence 1245778899999987544433
No 173
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=54.39 E-value=1.4e+02 Score=29.33 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=57.5
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEE-EEeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRII-ITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Il-vTTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|++... ..+..+...+........+| .||....+...+ .....+...+++.++....+...+-..+..-
T Consensus 120 ~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i- 198 (559)
T PRK05563 120 YKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY- 198 (559)
T ss_pred eEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 347899999854 45777776665433444444 455444443332 2235788999999999888887663222111
Q ss_pred cHHHHHHHHHHHhCCCchHH
Q 021517 78 GYEELSCKVMKYAQGVPLAL 97 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai 97 (311)
-.+.+..|++.++|.+..+
T Consensus 199 -~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 199 -EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred -CHHHHHHHHHHcCCCHHHH
Confidence 1255677788888876533
No 174
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=52.22 E-value=1.1e+02 Score=27.26 Aligned_cols=89 Identities=11% Similarity=0.150 Sum_probs=54.2
Q ss_pred EEEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEEEe-CchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITT-RNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IlvTT-R~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
=++|+||+.... ..+.++..+..-.+++.+|++| ....+...+ .....+++.++++++..+.+... + .++
T Consensus 92 KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~--~---~~~- 165 (299)
T PRK07132 92 KILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK--N---KEK- 165 (299)
T ss_pred eEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc--C---CCh-
Confidence 467888887553 3666666665545667666555 444454443 34568999999999998777653 1 111
Q ss_pred HHHHHHHHHHHhCCCchHHHH
Q 021517 79 YEELSCKVMKYAQGVPLALKV 99 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai~~ 99 (311)
+.+..++...+|.--|+..
T Consensus 166 --~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 166 --EYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred --hHHHHHHHHcCCHHHHHHH
Confidence 3355566666663344444
No 175
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=49.84 E-value=73 Score=29.50 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=37.8
Q ss_pred CcEEEEEeCchhHHHh-c----CCCceEEcCCCCHHHHHHHHHHhhcCCCCC-CccHHHHHHHHHHHhCCCc
Q 021517 29 VSRIIITTRNKQVLRN-W----GVRKIYEMKALEYHHAIRLFSRHAFKQNHP-DVGYEELSCKVMKYAQGVP 94 (311)
Q Consensus 29 gs~IlvTTR~~~va~~-~----~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~c~glP 94 (311)
+..||.||...+.... . ..+..+.+++.+.++-.++|..+..+..-. ..++ ..+++.+.|.-
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGAS 337 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCCC
Confidence 4567777765433221 1 234679999999999999999877433222 2233 44555565543
No 176
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=49.56 E-value=24 Score=28.15 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=32.1
Q ss_pred EEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCchh-HHHhc-CCCceEEcCCCC
Q 021517 4 LIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALE 57 (311)
Q Consensus 4 LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~-va~~~-~~~~~~~l~~L~ 57 (311)
.+|+||++.. +....++..+..-..++.+|++|++.+ +...+ .-...+.+.++|
T Consensus 105 viiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 105 VIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 6899999864 447777766655567888888888764 33333 333466666654
No 177
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=47.11 E-value=36 Score=25.27 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=15.7
Q ss_pred CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCcccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWH 296 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~ 296 (311)
+.|+.+.+.+ .+..++... ...+|+.+++..+ +..++.
T Consensus 58 ~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~ 97 (129)
T PF13306_consen 58 KSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGS 97 (129)
T ss_dssp TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHT
T ss_pred cccccccccc-cccccccccccccccccccccCcc-ccEEch
Confidence 3555555543 444444443 2555555555442 444443
No 178
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.84 E-value=84 Score=30.85 Aligned_cols=96 Identities=15% Similarity=0.200 Sum_probs=57.4
Q ss_pred EEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEE-EEeCchhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRII-ITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Il-vTTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
-++|+|++... ...+.+...+..-...+.+| +||....+...+ .....+++.+++.++....+...+-..+.. -
T Consensus 121 KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i 198 (576)
T PRK14965 121 KIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--I 198 (576)
T ss_pred eEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--C
Confidence 36889998754 34666666554433455554 555555555443 233578899999998888777655222211 1
Q ss_pred HHHHHHHHHHHhCCCc-hHHHHH
Q 021517 79 YEELSCKVMKYAQGVP-LALKVL 100 (311)
Q Consensus 79 ~~~~~~~i~~~c~glP-Lai~~~ 100 (311)
-.+....|++.++|.. .|+..+
T Consensus 199 ~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 199 SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1245667788888855 444444
No 179
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=45.64 E-value=2.1e+02 Score=24.98 Aligned_cols=95 Identities=15% Similarity=0.088 Sum_probs=56.0
Q ss_pred eEEEEEeCCCC---HHHHHHHHhcCCCCCCCcEEEEEeCchh-------HHHhcCCCceEEcCCCCHHHHHHHHHHhhcC
Q 021517 2 KVLIVFDDVTC---FSQIESLIGSLDWLTPVSRIIITTRNKQ-------VLRNWGVRKIYEMKALEYHHAIRLFSRHAFK 71 (311)
Q Consensus 2 r~LlVLDdv~~---~~~~~~l~~~~~~~~~gs~IlvTTR~~~-------va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~ 71 (311)
+-++|+++... ...++.+...+....++..+|+++-..+ ..........+...+++..+-.......+-.
T Consensus 47 ~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 126 (302)
T TIGR01128 47 RRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLKK 126 (302)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHH
Confidence 45788988865 3457777766655555666666664321 1111123456777788888877777766533
Q ss_pred CCCCCccHHHHHHHHHHHhCCCchHHH
Q 021517 72 QNHPDVGYEELSCKVMKYAQGVPLALK 98 (311)
Q Consensus 72 ~~~~~~~~~~~~~~i~~~c~glPLai~ 98 (311)
.+.. --.+.+..+++.++|...++.
T Consensus 127 ~g~~--i~~~a~~~l~~~~~~d~~~l~ 151 (302)
T TIGR01128 127 LGLR--IDPDAVQLLAELVEGNLLAIA 151 (302)
T ss_pred cCCC--CCHHHHHHHHHHhCcHHHHHH
Confidence 2211 112556777778877665544
No 180
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.15 E-value=3.6 Score=36.07 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=39.9
Q ss_pred CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 257 AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
.+.+-|++.||++..+.-.-++..|++|.|+-|+|+.|-. +...++|+-|-++
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLR 71 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLR 71 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHH
Confidence 3557899999998877322269999999999999999864 6666776655443
No 181
>PF07328 VirD1: T-DNA border endonuclease VirD1; InterPro: IPR009933 This family consists of several T-DNA border endonuclease VirD1 proteins, which appear to be found exclusively in Agrobacterium species. Agrobacterium, a plant pathogen, is capable to stably transform the plant cell with a segment of its own DNA called T-DNA (transferred DNA). This process depends, among others, on the specialised bacterial virulence proteins VirD1 and VirD2 that excise the T-DNA from its adjacent sequences. VirD1 is thought to interact with VirD2 in this process [].; GO: 0004519 endonuclease activity
Probab=37.14 E-value=66 Score=24.64 Aligned_cols=84 Identities=10% Similarity=0.030 Sum_probs=56.6
Q ss_pred EEEEeCchhHHHhcCCCceEEcCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccccHHH
Q 021517 32 IIITTRNKQVLRNWGVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHKREKEV 111 (311)
Q Consensus 32 IlvTTR~~~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~ 111 (311)
.+|.+|....- .-........-+++..-+....-.++.|=-+.+.+..+..+.|....||+.-.|..+++.-...+..+
T Consensus 26 kVvSvRlr~AE-~esfs~q~~~lGl~~n~alRVavrri~GFLEiDa~tr~~l~~il~sIg~la~Nin~i~~Aa~~~~~pd 104 (147)
T PF07328_consen 26 KVVSVRLRSAE-YESFSAQARELGLSDNMALRVAVRRIGGFLEIDAETRQKLEDILRSIGGLATNINQILKAANRTPRPD 104 (147)
T ss_pred eEEeehhhHHH-HHHHHHHHHHhCCchhhHHHHHHHHHcchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 45667765432 11223345666788888888888888664455566677788888888999999988888877654444
Q ss_pred HHHHH
Q 021517 112 WESAT 116 (311)
Q Consensus 112 w~~~~ 116 (311)
++.+.
T Consensus 105 ~e~f~ 109 (147)
T PF07328_consen 105 YEAFR 109 (147)
T ss_pred HHHHH
Confidence 44443
No 182
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=36.05 E-value=48 Score=26.94 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=24.2
Q ss_pred EEEEeCCCCHHH-----HHHHHhcCCCCCCCcEEEEEeCchh
Q 021517 4 LIVFDDVTCFSQ-----IESLIGSLDWLTPVSRIIITTRNKQ 40 (311)
Q Consensus 4 LlVLDdv~~~~~-----~~~l~~~~~~~~~gs~IlvTTR~~~ 40 (311)
|+|||.+-..-. .+.+...+....++.-||+|-|+..
T Consensus 100 lvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 100 LVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred EEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 789999864322 2344444444446778999999873
No 183
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=35.99 E-value=4e+02 Score=28.15 Aligned_cols=99 Identities=7% Similarity=0.094 Sum_probs=50.6
Q ss_pred EEEEEeCCCCHH-----HHHHHHhcCCCCCCCcEEEE--EeCchhH--------HHhcCCCceEEcCCCCHHHHHHHHHH
Q 021517 3 VLIVFDDVTCFS-----QIESLIGSLDWLTPVSRIII--TTRNKQV--------LRNWGVRKIYEMKALEYHHAIRLFSR 67 (311)
Q Consensus 3 ~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~Ilv--TTR~~~v--------a~~~~~~~~~~l~~L~~~~a~~Lf~~ 67 (311)
.+||||+|+... .+-.+..... ..+++|+| +|...+. ...++. ..+...|.+.++-.+++..
T Consensus 871 ~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~ 947 (1164)
T PTZ00112 871 SILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKE 947 (1164)
T ss_pred eEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHH
Confidence 489999998542 1222222211 23555544 3332221 112221 2467799999999999999
Q ss_pred hhcCCCC--CCccHHHHHHHHHHHhCCCchHHHHHHHHh
Q 021517 68 HAFKQNH--PDVGYEELSCKVMKYAQGVPLALKVLGCFL 104 (311)
Q Consensus 68 ~a~~~~~--~~~~~~~~~~~i~~~c~glPLai~~~~~~L 104 (311)
++-.... .+..+.-+|+.++..-|-.=.||.++-.+.
T Consensus 948 RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 948 RLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred HHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 8843211 222333344444433344455555554444
No 184
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=35.31 E-value=57 Score=26.97 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=25.4
Q ss_pred EEEEeCCCCHHH-----HHHHHhcCCCCCCCcEEEEEeCchh
Q 021517 4 LIVFDDVTCFSQ-----IESLIGSLDWLTPVSRIIITTRNKQ 40 (311)
Q Consensus 4 LlVLDdv~~~~~-----~~~l~~~~~~~~~gs~IlvTTR~~~ 40 (311)
|+|||.+-..-. .+++...+.....+.-||+|-|+..
T Consensus 118 lvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 118 LVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred EEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 799999865432 4455555544456778999999863
No 185
>CHL00176 ftsH cell division protein; Validated
Probab=35.20 E-value=3.3e+02 Score=27.24 Aligned_cols=89 Identities=10% Similarity=0.161 Sum_probs=51.8
Q ss_pred eEEEEEeCCCCH------------H----HHHHHHhcCCC--CCCCcEEEEEeCchhHHHh-c----CCCceEEcCCCCH
Q 021517 2 KVLIVFDDVTCF------------S----QIESLIGSLDW--LTPVSRIIITTRNKQVLRN-W----GVRKIYEMKALEY 58 (311)
Q Consensus 2 r~LlVLDdv~~~------------~----~~~~l~~~~~~--~~~gs~IlvTTR~~~va~~-~----~~~~~~~l~~L~~ 58 (311)
.++|++||++.. . .+..++..+.. ...+-.||.||...+.... . ..+..+.++..+.
T Consensus 276 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~ 355 (638)
T CHL00176 276 PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDR 355 (638)
T ss_pred CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCH
Confidence 468999999633 1 13344433321 2235566777766443222 1 2346789999999
Q ss_pred HHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCC
Q 021517 59 HHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGV 93 (311)
Q Consensus 59 ~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~gl 93 (311)
++-.++++.++-.... ........+++.+.|.
T Consensus 356 ~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 356 EGRLDILKVHARNKKL---SPDVSLELIARRTPGF 387 (638)
T ss_pred HHHHHHHHHHHhhccc---chhHHHHHHHhcCCCC
Confidence 9999999887733111 1123346677777773
No 186
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=35.07 E-value=1.8e+02 Score=27.13 Aligned_cols=68 Identities=16% Similarity=0.254 Sum_probs=41.6
Q ss_pred eEEEEEeCCCCH-------------H---HHHHHHhcCCC--CCCCcEEEEEeCchhHHHh-c----CCCceEEcCCCCH
Q 021517 2 KVLIVFDDVTCF-------------S---QIESLIGSLDW--LTPVSRIIITTRNKQVLRN-W----GVRKIYEMKALEY 58 (311)
Q Consensus 2 r~LlVLDdv~~~-------------~---~~~~l~~~~~~--~~~gs~IlvTTR~~~va~~-~----~~~~~~~l~~L~~ 58 (311)
..+|++|+++.. + .+..+...+.. ...+..||+||...+.... + ..+..++++..+.
T Consensus 239 P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~ 318 (398)
T PTZ00454 239 PSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 318 (398)
T ss_pred CeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCH
Confidence 468999997642 1 12233333321 1245678888876544322 1 2356789999999
Q ss_pred HHHHHHHHHhh
Q 021517 59 HHAIRLFSRHA 69 (311)
Q Consensus 59 ~~a~~Lf~~~a 69 (311)
++-..+|....
T Consensus 319 ~~R~~Il~~~~ 329 (398)
T PTZ00454 319 RQKRLIFQTIT 329 (398)
T ss_pred HHHHHHHHHHH
Confidence 99888888665
No 187
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=34.84 E-value=3.3e+02 Score=24.20 Aligned_cols=96 Identities=11% Similarity=0.051 Sum_probs=46.9
Q ss_pred eEEEEEeCCC-----CHHHHHHHHhcCCCCCCCcEEEEEeCch-----hHHHhcC-CCceEEcC---CCCHHHHHHHHHH
Q 021517 2 KVLIVFDDVT-----CFSQIESLIGSLDWLTPVSRIIITTRNK-----QVLRNWG-VRKIYEMK---ALEYHHAIRLFSR 67 (311)
Q Consensus 2 r~LlVLDdv~-----~~~~~~~l~~~~~~~~~gs~IlvTTR~~-----~va~~~~-~~~~~~l~---~L~~~~a~~Lf~~ 67 (311)
+-++|++|.. ..+.++.+...+.+..+.+.+|+++... .....+. ...+.... +.+.++-......
T Consensus 62 ~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~ 141 (326)
T PRK07452 62 GRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVER 141 (326)
T ss_pred ceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHH
Confidence 3467777762 3344566666555444566677654332 1111111 11233333 3344444455555
Q ss_pred hhcCCCCCCccHHHHHHHHHHHhCCCchHHHH
Q 021517 68 HAFKQNHPDVGYEELSCKVMKYAQGVPLALKV 99 (311)
Q Consensus 68 ~a~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 99 (311)
.+-..+.. --.+.+..+++.+||...++..
T Consensus 142 ~~~~~g~~--i~~~a~~~L~~~~g~dl~~l~~ 171 (326)
T PRK07452 142 TAQELGVK--LTPEAAELLAEAVGNDSRRLYN 171 (326)
T ss_pred HHHHcCCC--CCHHHHHHHHHHhCccHHHHHH
Confidence 54222211 1225677788888887765543
No 188
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=34.32 E-value=57 Score=24.14 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=35.3
Q ss_pred cccCCCCCC--CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccccc-cCcccccccc
Q 021517 248 ISYLQDPGF--AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHCVK-VCISYYTCGI 309 (311)
Q Consensus 248 ~~lp~~~~~--~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~i~-~L~~L~~l~i 309 (311)
..++..... ..|+.+.+.++ +..++... +...|+++.+.. .+..++...- +..+|+.+.+
T Consensus 24 ~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 24 KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp -EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 345554444 68999999874 88888766 577899999976 6777776543 3667766544
No 189
>PRK08116 hypothetical protein; Validated
Probab=32.82 E-value=29 Score=30.34 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=19.7
Q ss_pred EEEEeCCCC--HHHHH--HHHhcCCC-CCCCcEEEEEeCch
Q 021517 4 LIVFDDVTC--FSQIE--SLIGSLDW-LTPVSRIIITTRNK 39 (311)
Q Consensus 4 LlVLDdv~~--~~~~~--~l~~~~~~-~~~gs~IlvTTR~~ 39 (311)
||||||+.. ..+|. .+...+.. ...|..+||||...
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 799999942 23332 23322221 12456799999654
No 190
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=31.91 E-value=3.6e+02 Score=23.74 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=41.5
Q ss_pred CeEEEEEeCCCCH--H----HHHHHHhcCCCCCCCcEEEEEeCchhHHHhcCC-------------------CceEEcCC
Q 021517 1 MKVLIVFDDVTCF--S----QIESLIGSLDWLTPVSRIIITTRNKQVLRNWGV-------------------RKIYEMKA 55 (311)
Q Consensus 1 kr~LlVLDdv~~~--~----~~~~l~~~~~~~~~gs~IlvTTR~~~va~~~~~-------------------~~~~~l~~ 55 (311)
+|.++|+||++.. + .|+.+...+. .++..+|+..-.+.++..... +.++.+++
T Consensus 172 ~~iViiIDdLDR~~~~~i~~~l~~ik~~~~--~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~ 249 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPEEIVELLEAIKLLLD--FPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPP 249 (325)
T ss_pred ceEEEEEcchhcCCcHHHHHHHHHHHHhcC--CCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCC
Confidence 5889999999863 2 2666555443 367777777766655543311 23577777
Q ss_pred CCHHHHHHHHHHh
Q 021517 56 LEYHHAIRLFSRH 68 (311)
Q Consensus 56 L~~~~a~~Lf~~~ 68 (311)
.+..+-...|...
T Consensus 250 ~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 250 PSPSDLERYLNEL 262 (325)
T ss_pred CCHHHHHHHHHHH
Confidence 7776655555544
No 191
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=31.75 E-value=86 Score=20.68 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHhcccc
Q 021517 79 YEELSCKVMKYAQGVPLALKVLGCFLHKRE 108 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai~~~~~~L~~~~ 108 (311)
...+--.|++.|+|++=-+.++-+.|+.+|
T Consensus 3 ~D~~ll~iaq~~~~I~~~Ld~fF~FL~RkT 32 (62)
T PF14050_consen 3 FDNMLLSIAQQCGGIEDFLDTFFSFLRRKT 32 (62)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Confidence 345667899999999999999999999874
No 192
>PRK08181 transposase; Validated
Probab=31.19 E-value=29 Score=30.35 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=18.9
Q ss_pred EEEEeCCCCH---HHH-HHHHhcCCCCCCCcEEEEEeCch
Q 021517 4 LIVFDDVTCF---SQI-ESLIGSLDWLTPVSRIIITTRNK 39 (311)
Q Consensus 4 LlVLDdv~~~---~~~-~~l~~~~~~~~~gs~IlvTTR~~ 39 (311)
|||+||+... +.+ +.+...+.....+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 7999999533 111 22332222111123589998764
No 193
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=30.85 E-value=1.5e+02 Score=28.77 Aligned_cols=68 Identities=15% Similarity=0.261 Sum_probs=42.0
Q ss_pred eEEEEEeCCCCHH---------H-----HHHHHhcCCCCC--CCcEEEEEeCchhHHHh-c----CCCceEEcCCCCHHH
Q 021517 2 KVLIVFDDVTCFS---------Q-----IESLIGSLDWLT--PVSRIIITTRNKQVLRN-W----GVRKIYEMKALEYHH 60 (311)
Q Consensus 2 r~LlVLDdv~~~~---------~-----~~~l~~~~~~~~--~gs~IlvTTR~~~va~~-~----~~~~~~~l~~L~~~~ 60 (311)
+++|++|+++..- + ...++..+.... .+..||.||...+.... + ..+..++++..+.++
T Consensus 290 p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~ 369 (512)
T TIGR03689 290 PVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEA 369 (512)
T ss_pred CceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHH
Confidence 5789999997431 1 234443333211 34455666655443221 1 335679999999999
Q ss_pred HHHHHHHhh
Q 021517 61 AIRLFSRHA 69 (311)
Q Consensus 61 a~~Lf~~~a 69 (311)
..++|..+.
T Consensus 370 r~~Il~~~l 378 (512)
T TIGR03689 370 AADIFSKYL 378 (512)
T ss_pred HHHHHHHHh
Confidence 999999886
No 194
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=27.57 E-value=74 Score=26.30 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=25.8
Q ss_pred EEEEeCCCCHH-----HHHHHHhcCCCCCCCcEEEEEeCchh
Q 021517 4 LIVFDDVTCFS-----QIESLIGSLDWLTPVSRIIITTRNKQ 40 (311)
Q Consensus 4 LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IlvTTR~~~ 40 (311)
|+|||.+.-.- .++++...+........||+|-|...
T Consensus 125 lviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap 166 (198)
T COG2109 125 LVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAP 166 (198)
T ss_pred EEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCC
Confidence 78999886432 25666666655556778999999753
No 195
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=26.85 E-value=1e+02 Score=31.53 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=57.1
Q ss_pred eEEEEEeCCCC---HHHH----HHHHhcCCCCCCCcEEEEEeCchhHHHhcCCC-ce--EEcCCCCHHHHHHHHHHhhcC
Q 021517 2 KVLIVFDDVTC---FSQI----ESLIGSLDWLTPVSRIIITTRNKQVLRNWGVR-KI--YEMKALEYHHAIRLFSRHAFK 71 (311)
Q Consensus 2 r~LlVLDdv~~---~~~~----~~l~~~~~~~~~gs~IlvTTR~~~va~~~~~~-~~--~~l~~L~~~~a~~Lf~~~a~~ 71 (311)
+-|+++|..-. ...- ..+...+. ..|+.+|+||-...+....... .+ +.+. ++. +... +..+. .
T Consensus 403 ~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~Ykl-~ 476 (771)
T TIGR01069 403 NSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PTYKL-L 476 (771)
T ss_pred CcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eEEEE-C
Confidence 45899999864 2222 22333332 2578899999998875543111 11 1111 111 1100 11111 1
Q ss_pred CCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccccHHHHHHHHHHHhc
Q 021517 72 QNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHKREKEVWESATDKLQR 121 (311)
Q Consensus 72 ~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~~~~l~~ 121 (311)
.+.+. ...|-+|++++ |+|-.+..-|..+......+...+++.+..
T Consensus 477 ~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 477 KGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred CCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11111 13466677766 888888888887766555566666665543
No 196
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=25.60 E-value=2.2e+02 Score=25.43 Aligned_cols=47 Identities=21% Similarity=0.068 Sum_probs=32.6
Q ss_pred eEEcCCCCHHHHHHHHHHhhcCCCCCC-ccHHHHHHHHHHHhCCCchH
Q 021517 50 IYEMKALEYHHAIRLFSRHAFKQNHPD-VGYEELSCKVMKYAQGVPLA 96 (311)
Q Consensus 50 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~c~glPLa 96 (311)
+++++.++.+|+..++..+.-.+--.. ...+...+++....+|.|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 789999999999999988773322211 33345566666677888853
No 197
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=25.59 E-value=4.8e+02 Score=23.15 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=40.0
Q ss_pred EEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCc-hhHHHhcC-CCceEEcCCCCHHHHHHHHH
Q 021517 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRN-KQVLRNWG-VRKIYEMKALEYHHAIRLFS 66 (311)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~-~~va~~~~-~~~~~~l~~L~~~~a~~Lf~ 66 (311)
=.+|+||++.. ...+.++..+..-.+++.+|++|.+ ..+..++. -...+.+.+ +.++..+.+.
T Consensus 106 kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 106 QVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred EEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 36889999865 4577787777655566666666655 45555542 235677766 6666666554
No 198
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=25.29 E-value=4.2e+02 Score=25.34 Aligned_cols=63 Identities=13% Similarity=0.039 Sum_probs=36.9
Q ss_pred CcEEEEEeCchhHHH-----hcCCCceEEcCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCc
Q 021517 29 VSRIIITTRNKQVLR-----NWGVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVP 94 (311)
Q Consensus 29 gs~IlvTTR~~~va~-----~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glP 94 (311)
+-.||.||...+... ....+..+.++..+.++-.++|....-..... .+ .....+++.+.|.-
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PD--VDLKAVARRTPGFS 260 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cc--hhHHHHHHhCCCCC
Confidence 445666665543211 11345688999999999999988776332211 11 12346777777643
No 199
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=24.07 E-value=47 Score=26.94 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=20.7
Q ss_pred EEEEeCCCCHHH-----HHHHHhcCCCCCCCcEEEEEeCchh
Q 021517 4 LIVFDDVTCFSQ-----IESLIGSLDWLTPVSRIIITTRNKQ 40 (311)
Q Consensus 4 LlVLDdv~~~~~-----~~~l~~~~~~~~~gs~IlvTTR~~~ 40 (311)
|||||.+-..-. .+++...+.......-||+|-|+..
T Consensus 99 lvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~ 140 (172)
T PF02572_consen 99 LVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAP 140 (172)
T ss_dssp EEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--
T ss_pred EEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCC
Confidence 789998854322 3344444433456788999999974
No 200
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=23.68 E-value=2e+02 Score=21.00 Aligned_cols=11 Identities=9% Similarity=0.389 Sum_probs=9.2
Q ss_pred eEEEEEeCCCC
Q 021517 2 KVLIVFDDVTC 12 (311)
Q Consensus 2 r~LlVLDdv~~ 12 (311)
+.+|++||++.
T Consensus 59 ~~vl~iDe~d~ 69 (132)
T PF00004_consen 59 PCVLFIDEIDK 69 (132)
T ss_dssp SEEEEEETGGG
T ss_pred ceeeeeccchh
Confidence 68999999963
No 201
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=22.63 E-value=76 Score=26.55 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCchh
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQ 40 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~ 40 (311)
..+||+|.+.+. +++..+.... +.|||||++--..+
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~~Q 157 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDPSQ 157 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE----
T ss_pred ceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCcee
Confidence 357999999765 4688877764 68999999975543
No 202
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=22.14 E-value=5.7e+02 Score=22.86 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=54.5
Q ss_pred CCCcEEEEEeCch-hHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCc-hHHHHHHHH
Q 021517 27 TPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVP-LALKVLGCF 103 (311)
Q Consensus 27 ~~gs~IlvTTR~~-~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~ 103 (311)
...+|+|+..-+. .+...+ .-.-.+++...+++|-...+++.+-..+-.-+ ++++.+|+++++|.- -|+-++ ..
T Consensus 155 s~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllml-E~ 231 (351)
T KOG2035|consen 155 SSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLML-EA 231 (351)
T ss_pred hcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHH-HH
Confidence 3456665543322 222222 22346899999999999999888743332222 688999999998864 333332 22
Q ss_pred hc--c--------c-cHHHHHHHHHHHh
Q 021517 104 LH--K--------R-EKEVWESATDKLQ 120 (311)
Q Consensus 104 L~--~--------~-~~~~w~~~~~~l~ 120 (311)
.+ + . ..-+|+-++.++.
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHHHH
Confidence 22 1 1 3568988887754
No 203
>PRK06921 hypothetical protein; Provisional
Probab=21.42 E-value=51 Score=28.72 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=18.2
Q ss_pred EEEEeCCCC-------HHHHH--HHHhcCCCC-CCCcEEEEEeCc
Q 021517 4 LIVFDDVTC-------FSQIE--SLIGSLDWL-TPVSRIIITTRN 38 (311)
Q Consensus 4 LlVLDdv~~-------~~~~~--~l~~~~~~~-~~gs~IlvTTR~ 38 (311)
||||||+.. ..+|. .+...+... ..+..+||||..
T Consensus 180 lLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 180 VLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred EEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 799999922 12333 233322211 124458888864
No 204
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=21.32 E-value=1.1e+02 Score=19.36 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHH
Q 021517 54 KALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVM 87 (311)
Q Consensus 54 ~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~ 87 (311)
..+++++|++++.+.+...+ ..+.++|..|+
T Consensus 26 ~g~~e~~A~~~Lr~~Am~~~---~~l~~vA~~ii 56 (56)
T PF03861_consen 26 YGLSEDEAYRLLRRQAMRRR---RSLADVAEEII 56 (56)
T ss_dssp HT--HHHHHHHHHHHHHHCT---S-HHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHHcC---CCHHHHHHHHC
Confidence 46899999999999885433 23445666553
No 205
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=21.06 E-value=10 Score=35.96 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=45.2
Q ss_pred CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCG 308 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~ 308 (311)
+.-..+++++|.+...|..+ .|..|+-+.+-.+++..+|.-|+++.++..++
T Consensus 104 ~~~t~~s~s~~~~~~~~~~vt~l~~~~~~~~~~~k~s~~~~li~k~~~~~i~r 156 (763)
T KOG4231|consen 104 KTVTSLSLSGCGLLVMPVEVTELPLLEKLCLEHNKLSVLPPLIGKLKNLKILR 156 (763)
T ss_pred eeeeecccccceeccChHHHHhhhhhhHHHHHHhhhccchhhhhhhhhHHHhc
Confidence 56677889999999999999 79999999999999999999999998877553
No 206
>CHL00195 ycf46 Ycf46; Provisional
Probab=20.97 E-value=3.8e+02 Score=25.82 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=41.9
Q ss_pred eEEEEEeCCCCHH--------------HHHHHHhcCCCCCCCcEEEEEeCchhHHH-h----cCCCceEEcCCCCHHHHH
Q 021517 2 KVLIVFDDVTCFS--------------QIESLIGSLDWLTPVSRIIITTRNKQVLR-N----WGVRKIYEMKALEYHHAI 62 (311)
Q Consensus 2 r~LlVLDdv~~~~--------------~~~~l~~~~~~~~~gs~IlvTTR~~~va~-~----~~~~~~~~l~~L~~~~a~ 62 (311)
+++|++|+++..- ....+...+.....+--||.||...+... . -..+..+.++..+.++-.
T Consensus 319 P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~ 398 (489)
T CHL00195 319 PCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEERE 398 (489)
T ss_pred CcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHH
Confidence 5788999987321 12233333332233444666776553211 1 134568899999999999
Q ss_pred HHHHHhhcC
Q 021517 63 RLFSRHAFK 71 (311)
Q Consensus 63 ~Lf~~~a~~ 71 (311)
++|..+...
T Consensus 399 ~Il~~~l~~ 407 (489)
T CHL00195 399 KIFKIHLQK 407 (489)
T ss_pred HHHHHHHhh
Confidence 999887743
No 207
>PRK06835 DNA replication protein DnaC; Validated
Probab=20.84 E-value=54 Score=29.65 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=19.5
Q ss_pred EEEEeCCCCH----HHHHHHHhcCCCC-CCCcEEEEEeCch
Q 021517 4 LIVFDDVTCF----SQIESLIGSLDWL-TPVSRIIITTRNK 39 (311)
Q Consensus 4 LlVLDdv~~~----~~~~~l~~~~~~~-~~gs~IlvTTR~~ 39 (311)
|||+||+... ...+.+...+... ..+-.+||||...
T Consensus 249 LLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 249 LLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 7999999533 2223333333211 1345688888653
No 208
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=20.82 E-value=2.5e+02 Score=24.48 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=38.2
Q ss_pred EEcCCCCHHHHHHHHHHhhcCCCCCCcc-HHHHHHHHHHHhCCCchHHHHHHH
Q 021517 51 YEMKALEYHHAIRLFSRHAFKQNHPDVG-YEELSCKVMKYAQGVPLALKVLGC 102 (311)
Q Consensus 51 ~~l~~L~~~~a~~Lf~~~a~~~~~~~~~-~~~~~~~i~~~c~glPLai~~~~~ 102 (311)
|++.|++.++....+..+.-+...+.+- ..+....|.....|.|.+|..++.
T Consensus 195 ~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 195 IELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred EecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 8999999998888888776544333222 235567788889999999887664
No 209
>PRK10869 recombination and repair protein; Provisional
Probab=20.49 E-value=4.1e+02 Score=25.98 Aligned_cols=91 Identities=12% Similarity=0.030 Sum_probs=44.7
Q ss_pred EEEEeCCCCH---HHHHHHHhcCCCCCCCcEEEEEeCchhHHHhcCCCceEEcCCCCHHHHHHHHHHhhcCCCCCCccHH
Q 021517 4 LIVFDDVTCF---SQIESLIGSLDWLTPVSRIIITTRNKQVLRNWGVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYE 80 (311)
Q Consensus 4 LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IlvTTR~~~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~ 80 (311)
++|+|.+... .....+...+.....+..||+.|-...++..+ +..|.+..-..+. ..+. .-..-+..
T Consensus 455 ~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~a--d~~~~v~k~~~~~-------~t~s-~i~~L~~~ 524 (553)
T PRK10869 455 ALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCG--HQHFFVSKETDGG-------MTET-HMQPLDKK 524 (553)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhC--CEEEEEeccccCC-------eeeE-EEEECChh
Confidence 6899998743 22222222222222356799999999888543 3344443211000 0000 00011234
Q ss_pred HHHHHHHHHhCCC---chHHHHHHHHh
Q 021517 81 ELSCKVMKYAQGV---PLALKVLGCFL 104 (311)
Q Consensus 81 ~~~~~i~~~c~gl---PLai~~~~~~L 104 (311)
+-..+|++..+|. +.|+..+..+|
T Consensus 525 ~R~~EiARMl~G~~~t~~~~~~A~eLl 551 (553)
T PRK10869 525 ARLQELARLLGGSEVTRNTLANAKELL 551 (553)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 5567788888774 44555554444
No 210
>PRK06526 transposase; Provisional
Probab=20.33 E-value=64 Score=27.93 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=18.2
Q ss_pred EEEEeCCCCH---HHHH-HHHhcCCC-CCCCcEEEEEeCch
Q 021517 4 LIVFDDVTCF---SQIE-SLIGSLDW-LTPVSRIIITTRNK 39 (311)
Q Consensus 4 LlVLDdv~~~---~~~~-~l~~~~~~-~~~gs~IlvTTR~~ 39 (311)
+||+||+... ..+. .+...+.. ...++ +|+||...
T Consensus 162 lLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 162 LLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 7999999743 1111 22222211 12344 88888764
No 211
>PRK10536 hypothetical protein; Provisional
Probab=20.33 E-value=79 Score=27.55 Aligned_cols=35 Identities=14% Similarity=0.327 Sum_probs=24.4
Q ss_pred EEEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEEEeCchh
Q 021517 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNKQ 40 (311)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~~ 40 (311)
-+||+|.+.+.. +...+... .+.+|++|+|-=..+
T Consensus 178 ~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~v~~GD~~Q 214 (262)
T PRK10536 178 AVVILDEAQNVTAAQMKMFLTR---LGENVTVIVNGDITQ 214 (262)
T ss_pred CEEEEechhcCCHHHHHHHHhh---cCCCCEEEEeCChhh
Confidence 378999998654 45555554 368999999875443
No 212
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.26 E-value=3.3e+02 Score=23.64 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=23.8
Q ss_pred EEEEeCCCC---HHHHHHHHhcCCCCCCCcEEEEEeCchhHHHh
Q 021517 4 LIVFDDVTC---FSQIESLIGSLDWLTPVSRIIITTRNKQVLRN 44 (311)
Q Consensus 4 LlVLDdv~~---~~~~~~l~~~~~~~~~gs~IlvTTR~~~va~~ 44 (311)
++++|.... ......+...+.....+..||++|.+..+...
T Consensus 195 vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~ 238 (276)
T cd03241 195 TLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAM 238 (276)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHh
Confidence 678888753 33333333322222235679999999887643
No 213
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.25 E-value=78 Score=29.06 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=24.3
Q ss_pred EEEEEeCCCCHH---HHHHHHhcCCCCCCCcEEEEEeCchhHH
Q 021517 3 VLIVFDDVTCFS---QIESLIGSLDWLTPVSRIIITTRNKQVL 42 (311)
Q Consensus 3 ~LlVLDdv~~~~---~~~~l~~~~~~~~~gs~IlvTTR~~~va 42 (311)
-+++|||+-..- .-+.+...+... |..|+|||.+....
T Consensus 304 pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~ 344 (365)
T TIGR00611 304 PILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHL 344 (365)
T ss_pred CEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhc
Confidence 478999997543 234455554322 56889999876543
No 214
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=20.10 E-value=25 Score=28.53 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=8.0
Q ss_pred EEEEeCCCCH
Q 021517 4 LIVFDDVTCF 13 (311)
Q Consensus 4 LlVLDdv~~~ 13 (311)
||||||+-..
T Consensus 111 lLilDDlG~~ 120 (178)
T PF01695_consen 111 LLILDDLGYE 120 (178)
T ss_dssp CEEEETCTSS
T ss_pred Eeccccccee
Confidence 6899999743
Done!