Query 021517
Match_columns 311
No_of_seqs 275 out of 1817
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 05:17:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.8E-37 2E-41 293.3 14.2 201 1-211 243-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-31 3.8E-36 278.3 14.5 199 1-210 236-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.6E-29 5.5E-34 249.1 10.6 180 1-203 244-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 9.8E-28 3.3E-32 231.4 13.4 195 1-207 236-449 (591)
5 2fna_A Conserved hypothetical 98.8 2.2E-08 7.4E-13 89.5 10.3 190 2-203 138-356 (357)
6 2qen_A Walker-type ATPase; unk 98.8 8.5E-08 2.9E-12 85.4 13.3 189 2-204 129-349 (350)
7 2r9u_A Variable lymphocyte rec 98.4 2.5E-07 8.7E-12 74.4 6.0 60 251-310 50-113 (174)
8 4fcg_A Uncharacterized protein 98.4 1E-07 3.5E-12 84.7 3.7 63 248-310 94-158 (328)
9 4b8c_D Glucose-repressible alc 98.4 1.5E-07 5.2E-12 92.5 4.6 65 246-310 258-324 (727)
10 1w5s_A Origin recognition comp 98.4 2E-06 6.9E-11 78.4 11.8 180 1-189 138-372 (412)
11 2r9u_A Variable lymphocyte rec 98.3 6.8E-07 2.3E-11 71.9 6.4 63 247-310 24-89 (174)
12 3g39_A Variable lymphocyte rec 98.3 6.2E-07 2.1E-11 71.8 6.0 62 249-310 44-110 (170)
13 3e6j_A Variable lymphocyte rec 98.3 1.1E-06 3.7E-11 73.9 6.8 54 257-310 88-143 (229)
14 4b8c_D Glucose-repressible alc 98.2 2.7E-07 9.3E-12 90.7 2.3 64 247-310 236-301 (727)
15 3g39_A Variable lymphocyte rec 98.2 1.5E-06 5.1E-11 69.5 6.2 63 247-310 21-86 (170)
16 2je0_A Acidic leucine-rich nuc 98.2 1E-06 3.4E-11 68.6 4.5 59 252-310 58-121 (149)
17 1dce_A Protein (RAB geranylger 98.2 8.4E-07 2.9E-11 84.7 4.7 59 249-309 455-515 (567)
18 2v9t_B SLIT homolog 2 protein 98.1 2.8E-06 9.4E-11 70.9 6.0 53 257-309 104-159 (220)
19 2wfh_A SLIT homolog 2 protein 98.1 2.4E-06 8.1E-11 69.9 5.4 58 253-310 73-134 (193)
20 1dce_A Protein (RAB geranylger 98.1 1.3E-06 4.5E-11 83.4 4.4 64 246-310 474-541 (567)
21 2ell_A Acidic leucine-rich nuc 98.1 1.7E-06 5.7E-11 68.8 3.8 59 252-310 65-128 (168)
22 1w8a_A SLIT protein; signaling 98.1 3.2E-06 1.1E-10 68.9 5.6 60 251-310 71-134 (192)
23 2v9t_B SLIT homolog 2 protein 98.1 3E-06 1E-10 70.7 5.2 60 251-310 73-136 (220)
24 1a9n_A U2A', U2A'; complex (nu 98.1 2.1E-06 7.1E-11 68.9 3.9 57 253-309 59-120 (176)
25 2ell_A Acidic leucine-rich nuc 98.1 2.1E-06 7.3E-11 68.2 3.8 61 250-310 87-155 (168)
26 2je0_A Acidic leucine-rich nuc 98.1 1.3E-06 4.5E-11 68.0 2.3 53 257-309 88-147 (149)
27 2o6r_A Variable lymphocyte rec 98.1 7.9E-06 2.7E-10 65.4 6.9 63 248-310 65-132 (177)
28 3e6j_A Variable lymphocyte rec 98.0 6E-06 2.1E-10 69.2 6.1 60 251-310 57-120 (229)
29 1w8a_A SLIT protein; signaling 98.0 4.7E-06 1.6E-10 67.9 5.3 63 248-310 42-110 (192)
30 4g8a_A TOLL-like receptor 4; l 98.0 3.7E-06 1.3E-10 80.6 5.2 53 257-309 100-155 (635)
31 2o6s_A Variable lymphocyte rec 98.0 8.9E-06 3E-10 66.9 6.8 54 257-310 100-156 (208)
32 2o6r_A Variable lymphocyte rec 98.0 7.4E-06 2.5E-10 65.6 6.1 62 249-310 42-108 (177)
33 1ogq_A PGIP-2, polygalacturona 98.0 1.6E-06 5.3E-11 76.5 2.0 61 249-309 116-181 (313)
34 2v70_A SLIT-2, SLIT homolog 2 98.0 6.4E-06 2.2E-10 68.7 5.4 57 254-310 101-161 (220)
35 4fcg_A Uncharacterized protein 98.0 2.4E-06 8.1E-11 75.8 2.7 62 249-310 197-261 (328)
36 2wfh_A SLIT homolog 2 protein 98.0 9.2E-06 3.1E-10 66.3 6.1 64 247-310 43-110 (193)
37 1a9n_A U2A', U2A'; complex (nu 98.0 3.8E-06 1.3E-10 67.3 3.5 53 257-310 42-96 (176)
38 2ifg_A High affinity nerve gro 98.0 5.6E-06 1.9E-10 73.7 4.8 57 253-309 51-110 (347)
39 3m19_A Variable lymphocyte rec 98.0 9.7E-06 3.3E-10 68.8 6.0 62 249-310 121-187 (251)
40 2v70_A SLIT-2, SLIT homolog 2 97.9 6E-06 2.1E-10 68.8 4.5 63 248-310 70-137 (220)
41 2o6s_A Variable lymphocyte rec 97.9 1.3E-05 4.4E-10 65.9 6.0 63 248-310 65-132 (208)
42 1p9a_G Platelet glycoprotein I 97.9 1.6E-05 5.5E-10 69.2 6.8 63 248-310 113-180 (290)
43 3vq2_A TLR4, TOLL-like recepto 97.9 1.1E-05 3.8E-10 77.2 6.0 60 251-310 97-161 (606)
44 3m19_A Variable lymphocyte rec 97.9 1.5E-05 5.1E-10 67.6 6.0 63 248-310 96-163 (251)
45 1p9a_G Platelet glycoprotein I 97.8 2.3E-05 8E-10 68.1 6.6 64 247-310 136-203 (290)
46 4g8a_A TOLL-like receptor 4; l 97.8 9.3E-06 3.2E-10 77.8 4.4 53 257-309 76-131 (635)
47 2o6q_A Variable lymphocyte rec 97.8 2.3E-05 7.7E-10 67.3 6.1 63 248-310 74-141 (270)
48 1xku_A Decorin; proteoglycan, 97.8 2.5E-05 8.7E-10 68.9 6.5 55 253-309 71-128 (330)
49 3o53_A Protein LRIM1, AGAP0063 97.8 1.1E-05 3.8E-10 71.0 4.2 62 249-310 183-245 (317)
50 3o6n_A APL1; leucine-rich repe 97.8 2.2E-05 7.7E-10 71.0 6.0 59 252-310 111-173 (390)
51 3vq2_A TLR4, TOLL-like recepto 97.8 2E-05 6.8E-10 75.5 5.8 60 251-310 73-136 (606)
52 2o6q_A Variable lymphocyte rec 97.8 3.8E-05 1.3E-09 65.9 6.8 57 254-310 129-189 (270)
53 4ezg_A Putative uncharacterize 97.8 1.6E-05 5.4E-10 64.9 4.0 60 250-310 104-167 (197)
54 4ezg_A Putative uncharacterize 97.8 1E-05 3.5E-10 66.0 2.8 59 250-310 128-189 (197)
55 1njg_A DNA polymerase III subu 97.8 0.00016 5.3E-09 60.2 10.2 101 2-104 127-231 (250)
56 3oja_B Anopheles plasmodium-re 97.8 2.7E-05 9.1E-10 74.7 6.0 58 253-310 118-179 (597)
57 1ogq_A PGIP-2, polygalacturona 97.8 8.2E-06 2.8E-10 71.8 2.2 60 250-309 93-156 (313)
58 2z63_A TOLL-like receptor 4, v 97.8 2.6E-05 9E-10 73.9 5.8 59 252-310 94-157 (570)
59 2z7x_B TOLL-like receptor 1, v 97.7 1E-05 3.5E-10 76.1 2.9 59 251-310 62-123 (520)
60 1ds9_A Outer arm dynein; leuci 97.7 3.7E-07 1.3E-11 74.9 -6.2 59 250-310 63-123 (198)
61 2xot_A Amphoterin-induced prot 97.7 2.3E-05 8E-10 70.3 5.1 62 249-310 102-171 (361)
62 3rfs_A Internalin B, repeat mo 97.7 3.5E-05 1.2E-09 66.2 5.9 62 249-310 123-189 (272)
63 3rgz_A Protein brassinosteroid 97.7 1.3E-05 4.5E-10 79.2 3.6 62 249-310 647-712 (768)
64 3a79_B TLR6, VLRB.59, TOLL-lik 97.7 1.8E-05 6E-10 75.3 4.3 59 251-310 93-154 (562)
65 2z81_A CD282 antigen, TOLL-lik 97.7 1.8E-05 6.1E-10 74.8 4.3 58 252-309 68-130 (549)
66 2ft3_A Biglycan; proteoglycan, 97.7 1.9E-05 6.5E-10 69.8 4.2 59 252-310 211-272 (332)
67 3rfs_A Internalin B, repeat mo 97.7 3.9E-05 1.4E-09 65.9 6.0 63 248-310 146-213 (272)
68 2z80_A TOLL-like receptor 2, v 97.7 1.5E-05 5.1E-10 71.2 3.4 56 254-309 96-156 (353)
69 3a79_B TLR6, VLRB.59, TOLL-lik 97.7 1.8E-05 6.3E-10 75.2 4.3 60 249-310 66-129 (562)
70 2ft3_A Biglycan; proteoglycan, 97.7 3.6E-05 1.2E-09 68.0 5.8 55 253-309 73-130 (332)
71 1h6u_A Internalin H; cell adhe 97.7 2.6E-05 8.9E-10 68.4 4.7 59 249-310 77-137 (308)
72 1wwl_A Monocyte differentiatio 97.7 1.6E-05 5.6E-10 69.7 3.4 62 249-310 110-181 (312)
73 2z62_A TOLL-like receptor 4, v 97.7 4.1E-05 1.4E-09 65.8 5.8 53 257-309 100-156 (276)
74 2ifg_A High affinity nerve gro 97.7 2.3E-05 7.8E-10 69.7 4.3 63 247-310 21-88 (347)
75 3o6n_A APL1; leucine-rich repe 97.7 4.5E-05 1.5E-09 69.0 6.1 57 253-309 88-148 (390)
76 1ozn_A Reticulon 4 receptor; N 97.7 4.9E-05 1.7E-09 65.6 6.0 57 254-310 149-209 (285)
77 2z80_A TOLL-like receptor 2, v 97.7 3.3E-05 1.1E-09 68.9 5.0 63 248-310 65-132 (353)
78 2xot_A Amphoterin-induced prot 97.7 4.2E-05 1.4E-09 68.6 5.7 53 257-309 88-143 (361)
79 1ozn_A Reticulon 4 receptor; N 97.7 4.8E-05 1.6E-09 65.6 5.9 60 251-310 122-185 (285)
80 2z63_A TOLL-like receptor 4, v 97.7 3.3E-05 1.1E-09 73.2 5.2 60 251-310 69-132 (570)
81 2z7x_B TOLL-like receptor 1, v 97.7 2.5E-05 8.7E-10 73.3 4.4 57 252-310 39-98 (520)
82 2id5_A Lingo-1, leucine rich r 97.7 3.3E-05 1.1E-09 71.7 5.1 60 251-310 73-136 (477)
83 1xku_A Decorin; proteoglycan, 97.7 2.3E-05 7.9E-10 69.2 3.8 57 253-309 211-270 (330)
84 4eco_A Uncharacterized protein 97.7 2.4E-05 8.2E-10 75.7 4.2 61 250-310 239-313 (636)
85 1xeu_A Internalin C; cellular 97.7 3.2E-05 1.1E-09 66.2 4.5 58 249-310 55-114 (263)
86 3t6q_A CD180 antigen; protein- 97.7 3.3E-05 1.1E-09 73.9 5.0 60 251-310 74-137 (606)
87 2z62_A TOLL-like receptor 4, v 97.7 3.8E-05 1.3E-09 65.9 4.9 58 253-310 71-132 (276)
88 1h6t_A Internalin B; cell adhe 97.7 3.7E-05 1.3E-09 66.8 4.9 55 254-310 86-142 (291)
89 2z66_A Variable lymphocyte rec 97.7 4.1E-05 1.4E-09 66.7 5.1 53 257-309 199-255 (306)
90 3rgz_A Protein brassinosteroid 97.6 3.4E-05 1.1E-09 76.3 4.9 62 249-310 623-688 (768)
91 3j0a_A TOLL-like receptor 5; m 97.6 3.9E-05 1.3E-09 76.6 5.4 60 251-310 66-131 (844)
92 1h6u_A Internalin H; cell adhe 97.6 4.8E-05 1.6E-09 66.7 5.3 56 253-310 102-159 (308)
93 3oja_B Anopheles plasmodium-re 97.6 6.1E-05 2.1E-09 72.2 6.1 57 253-309 94-154 (597)
94 3zyi_A Leucine-rich repeat-con 97.6 5E-05 1.7E-09 70.1 5.3 59 252-310 117-179 (452)
95 4fmz_A Internalin; leucine ric 97.6 4.6E-05 1.6E-09 67.6 4.9 55 254-310 84-140 (347)
96 3oja_A Leucine-rich immune mol 97.6 3.5E-05 1.2E-09 72.1 4.0 62 249-310 183-245 (487)
97 3v47_A TOLL-like receptor 5B a 97.6 5.3E-05 1.8E-09 69.8 5.1 58 253-310 74-137 (455)
98 1o6v_A Internalin A; bacterial 97.6 4.7E-05 1.6E-09 70.7 4.8 54 254-309 86-141 (466)
99 1wwl_A Monocyte differentiatio 97.6 6.7E-05 2.3E-09 65.8 5.5 55 254-310 249-304 (312)
100 2id5_A Lingo-1, leucine rich r 97.6 7E-05 2.4E-09 69.5 5.9 53 257-309 104-159 (477)
101 3zyi_A Leucine-rich repeat-con 97.6 7.4E-05 2.5E-09 69.0 6.0 63 248-310 136-204 (452)
102 2z66_A Variable lymphocyte rec 97.6 4.4E-05 1.5E-09 66.5 4.0 62 249-310 166-231 (306)
103 3cvr_A Invasion plasmid antige 97.6 9E-05 3.1E-09 70.6 6.3 59 247-310 172-238 (571)
104 1ziw_A TOLL-like receptor 3; i 97.5 3.1E-05 1.1E-09 75.2 3.1 63 248-310 86-153 (680)
105 4ecn_A Leucine-rich repeat pro 97.5 4.5E-05 1.5E-09 76.3 4.2 61 250-310 481-556 (876)
106 4eco_A Uncharacterized protein 97.5 6.8E-05 2.3E-09 72.5 5.2 52 258-309 489-543 (636)
107 2z81_A CD282 antigen, TOLL-lik 97.5 4.1E-05 1.4E-09 72.3 3.4 53 257-309 50-105 (549)
108 2xwt_C Thyrotropin receptor; s 97.5 6.3E-05 2.2E-09 63.1 4.2 64 247-310 43-113 (239)
109 3j0a_A TOLL-like receptor 5; m 97.5 4.8E-05 1.7E-09 76.0 3.9 61 250-310 89-156 (844)
110 3t6q_A CD180 antigen; protein- 97.5 0.0001 3.6E-09 70.4 5.9 57 254-310 274-333 (606)
111 3o53_A Protein LRIM1, AGAP0063 97.5 5.8E-05 2E-09 66.3 3.7 54 257-310 169-222 (317)
112 2qby_B CDC6 homolog 3, cell di 97.5 0.0061 2.1E-07 54.5 17.3 172 3-188 135-339 (384)
113 3zyj_A Leucine-rich repeat-con 97.5 7.2E-05 2.5E-09 68.8 4.5 59 252-310 106-168 (440)
114 1ds9_A Outer arm dynein; leuci 97.5 1.5E-06 5E-11 71.2 -6.2 61 249-310 84-148 (198)
115 1o6v_A Internalin A; bacterial 97.5 6.8E-05 2.3E-09 69.5 4.4 53 254-308 108-162 (466)
116 4ecn_A Leucine-rich repeat pro 97.5 5.7E-05 2E-09 75.5 4.0 53 257-309 595-651 (876)
117 1xeu_A Internalin C; cellular 97.5 8.4E-05 2.9E-09 63.6 4.6 61 247-310 75-136 (263)
118 3bz5_A Internalin-J, INLJ; leu 97.5 9.6E-05 3.3E-09 68.5 5.2 53 254-310 81-135 (457)
119 3g06_A SSPH2 (leucine-rich rep 97.5 0.00014 4.8E-09 70.0 6.3 52 257-310 241-292 (622)
120 3v47_A TOLL-like receptor 5B a 97.5 7.6E-05 2.6E-09 68.7 4.3 59 252-310 341-403 (455)
121 3zyj_A Leucine-rich repeat-con 97.4 0.0001 3.5E-09 67.8 5.0 64 247-310 124-193 (440)
122 1m9s_A Internalin B; cell inva 97.4 8.9E-05 3E-09 71.3 4.7 55 254-310 83-139 (605)
123 1h6t_A Internalin B; cell adhe 97.4 0.0001 3.4E-09 64.1 4.5 59 249-310 104-164 (291)
124 3g06_A SSPH2 (leucine-rich rep 97.4 0.00018 6.1E-09 69.3 6.2 38 257-296 81-118 (622)
125 4glp_A Monocyte differentiatio 97.4 0.00015 5.1E-09 63.4 4.9 58 251-310 241-302 (310)
126 4fmz_A Internalin; leucine ric 97.3 0.00016 5.5E-09 64.0 4.9 56 254-310 106-163 (347)
127 1ziw_A TOLL-like receptor 3; i 97.3 0.0003 1E-08 68.2 6.9 56 254-309 117-178 (680)
128 3oja_A Leucine-rich immune mol 97.3 0.00012 4E-09 68.5 3.6 61 250-310 160-222 (487)
129 3bz5_A Internalin-J, INLJ; leu 97.3 0.00018 6.2E-09 66.7 4.4 58 248-310 55-114 (457)
130 1m9s_A Internalin B; cell inva 97.3 0.00023 7.8E-09 68.4 5.1 59 249-310 101-161 (605)
131 4glp_A Monocyte differentiatio 97.3 0.00016 5.6E-09 63.2 3.8 52 257-310 224-280 (310)
132 1jl5_A Outer protein YOPM; leu 97.2 0.00043 1.5E-08 64.0 6.4 57 249-309 145-202 (454)
133 2qby_A CDC6 homolog 1, cell di 97.2 0.0039 1.4E-07 55.6 12.4 180 2-188 129-348 (386)
134 4ay9_X Follicle-stimulating ho 97.2 0.0003 1E-08 62.6 4.7 59 249-307 168-231 (350)
135 2xwt_C Thyrotropin receptor; s 97.1 0.00052 1.8E-08 57.4 5.7 57 254-310 151-213 (239)
136 1fnn_A CDC6P, cell division co 97.1 0.0037 1.3E-07 56.0 11.4 201 2-209 126-386 (389)
137 2v1u_A Cell division control p 96.9 0.034 1.2E-06 49.4 15.9 177 1-188 130-351 (387)
138 1sxj_B Activator 1 37 kDa subu 96.9 0.0067 2.3E-07 52.8 10.8 101 1-103 107-212 (323)
139 3rw6_A Nuclear RNA export fact 96.9 0.00041 1.4E-08 59.4 2.6 34 257-291 196-232 (267)
140 3cvr_A Invasion plasmid antige 96.9 0.0013 4.3E-08 62.7 6.1 41 257-300 160-200 (571)
141 4ay9_X Follicle-stimulating ho 96.8 0.0013 4.5E-08 58.4 5.5 61 247-309 190-253 (350)
142 2chg_A Replication factor C sm 96.8 0.0044 1.5E-07 50.5 7.9 99 2-102 103-205 (226)
143 1jl5_A Outer protein YOPM; leu 96.8 0.002 6.8E-08 59.6 6.4 38 258-296 216-254 (454)
144 2ast_B S-phase kinase-associat 96.7 0.00021 7.1E-09 62.9 -0.7 61 250-310 110-176 (336)
145 2ca6_A RAN GTPase-activating p 96.6 0.00032 1.1E-08 63.2 0.1 54 257-310 94-167 (386)
146 2ca6_A RAN GTPase-activating p 96.6 0.00056 1.9E-08 61.6 1.5 61 250-310 208-282 (386)
147 2ast_B S-phase kinase-associat 96.3 0.0013 4.6E-08 57.7 2.1 60 251-310 86-150 (336)
148 3rfe_A Platelet glycoprotein I 95.7 0.011 3.6E-07 44.7 4.5 40 249-289 24-65 (130)
149 3goz_A Leucine-rich repeat-con 95.6 0.0012 4E-08 59.1 -1.6 53 258-310 52-117 (362)
150 1iqp_A RFCS; clamp loader, ext 94.9 0.059 2E-06 46.7 7.4 99 2-102 111-213 (327)
151 3rfe_A Platelet glycoprotein I 94.9 0.021 7.2E-07 43.0 3.8 50 260-310 11-63 (130)
152 1z7x_W Ribonuclease inhibitor; 94.9 0.0042 1.4E-07 56.9 -0.3 35 258-292 86-126 (461)
153 3rw6_A Nuclear RNA export fact 94.7 0.0055 1.9E-07 52.4 0.1 53 257-310 170-228 (267)
154 3goz_A Leucine-rich repeat-con 94.7 0.0083 2.8E-07 53.4 1.1 54 257-310 225-292 (362)
155 1z7x_W Ribonuclease inhibitor; 94.6 0.0065 2.2E-07 55.7 0.3 52 257-308 370-436 (461)
156 3un9_A NLR family member X1; l 94.4 0.0063 2.2E-07 54.6 -0.4 61 250-310 175-247 (372)
157 3un9_A NLR family member X1; l 94.1 0.0058 2E-07 54.9 -1.2 45 250-294 203-254 (372)
158 1io0_A Tropomodulin; LRR prote 94.0 0.0093 3.2E-07 47.8 -0.1 54 257-310 93-159 (185)
159 3e4g_A ATP synthase subunit S, 93.9 0.021 7.2E-07 45.4 1.8 31 280-310 115-147 (176)
160 1jr3_A DNA polymerase III subu 93.7 0.32 1.1E-05 42.9 9.6 98 2-101 120-221 (373)
161 3ogk_B Coronatine-insensitive 93.6 0.0091 3.1E-07 56.6 -1.0 53 257-309 192-250 (592)
162 2chq_A Replication factor C sm 93.4 0.83 2.8E-05 39.1 11.4 98 2-101 103-204 (319)
163 2ra8_A Uncharacterized protein 93.1 0.014 4.8E-07 52.2 -0.5 54 257-310 252-315 (362)
164 1io0_A Tropomodulin; LRR prote 92.7 0.021 7.3E-07 45.7 0.2 35 257-291 121-163 (185)
165 3sb4_A Hypothetical leucine ri 92.4 0.084 2.9E-06 46.1 3.5 61 247-309 238-304 (329)
166 2p1m_B Transport inhibitor res 91.7 0.026 8.8E-07 53.4 -0.7 54 257-310 156-219 (594)
167 3ogk_B Coronatine-insensitive 91.6 0.055 1.9E-06 51.1 1.5 58 252-309 264-325 (592)
168 3sb4_A Hypothetical leucine ri 91.4 0.23 8E-06 43.2 5.3 59 248-307 262-326 (329)
169 1a5t_A Delta prime, HOLB; zinc 91.4 1.3 4.3E-05 38.7 10.0 92 2-100 109-204 (334)
170 1d2n_A N-ethylmaleimide-sensit 91.3 1.5 5.3E-05 36.7 10.2 114 2-122 125-264 (272)
171 3bos_A Putative DNA replicatio 91.2 0.23 7.8E-06 40.7 4.8 97 3-101 106-217 (242)
172 2p1m_B Transport inhibitor res 89.3 0.079 2.7E-06 50.0 0.3 59 250-309 176-242 (594)
173 1hqc_A RUVB; extended AAA-ATPa 89.0 1.1 3.9E-05 38.4 7.7 100 3-104 92-214 (324)
174 1sxj_A Activator 1 95 kDa subu 88.4 2.5 8.7E-05 39.3 10.0 96 2-102 149-254 (516)
175 1sxj_E Activator 1 40 kDa subu 86.3 1.8 6.3E-05 37.7 7.4 97 3-101 136-237 (354)
176 2ra8_A Uncharacterized protein 85.8 0.31 1E-05 43.4 2.0 55 256-310 192-260 (362)
177 2z4s_A Chromosomal replication 85.2 2 6.7E-05 39.2 7.2 93 3-98 196-303 (440)
178 1sxj_D Activator 1 41 kDa subu 82.2 4.9 0.00017 34.8 8.3 97 3-101 135-235 (353)
179 3h4m_A Proteasome-activating n 81.5 5.5 0.00019 33.4 8.1 92 3-98 112-228 (285)
180 2qz4_A Paraplegin; AAA+, SPG7, 80.0 16 0.00056 29.8 10.6 93 2-95 99-215 (262)
181 1jr3_D DNA polymerase III, del 79.6 8.9 0.0003 33.2 9.0 97 2-100 77-184 (343)
182 3pfi_A Holliday junction ATP-d 79.6 25 0.00084 30.1 11.9 97 3-101 108-227 (338)
183 4fdw_A Leucine rich hypothetic 77.8 2.5 8.6E-05 37.9 5.0 52 257-309 180-233 (401)
184 4fdw_A Leucine rich hypothetic 74.5 3.2 0.00011 37.2 4.7 50 257-307 157-208 (401)
185 3e4g_A ATP synthase subunit S, 74.0 2.2 7.4E-05 33.7 3.0 64 247-310 50-122 (176)
186 1xwi_A SKD1 protein; VPS4B, AA 73.6 35 0.0012 29.2 11.1 98 2-101 106-223 (322)
187 3eie_A Vacuolar protein sortin 73.6 27 0.00091 29.9 10.3 97 2-100 111-227 (322)
188 2qp9_X Vacuolar protein sortin 73.5 45 0.0015 29.0 11.9 96 2-101 144-261 (355)
189 3syl_A Protein CBBX; photosynt 72.7 5.8 0.0002 33.7 5.8 66 3-70 132-218 (309)
190 3u61_B DNA polymerase accessor 71.0 9.9 0.00034 32.5 6.9 93 2-98 106-213 (324)
191 3d8b_A Fidgetin-like protein 1 69.1 31 0.0011 30.0 9.8 98 2-101 177-295 (357)
192 2zan_A Vacuolar protein sortin 68.4 52 0.0018 29.6 11.5 97 2-100 228-344 (444)
193 1l8q_A Chromosomal replication 68.2 19 0.00065 30.7 8.2 89 3-95 100-202 (324)
194 3uk6_A RUVB-like 2; hexameric 66.1 24 0.00083 30.5 8.5 90 3-98 191-300 (368)
195 3vfd_A Spastin; ATPase, microt 63.6 63 0.0021 28.3 10.8 70 29-100 252-325 (389)
196 3pvs_A Replication-associated 62.5 28 0.00095 31.6 8.3 98 2-100 107-214 (447)
197 2gno_A DNA polymerase III, gam 56.2 10 0.00036 32.5 4.1 67 2-69 83-152 (305)
198 4h09_A Hypothetical leucine ri 53.5 18 0.00062 31.5 5.4 52 257-309 286-340 (379)
199 1jbk_A CLPB protein; beta barr 50.5 18 0.0006 27.5 4.4 62 2-65 116-194 (195)
200 1sxj_C Activator 1 40 kDa subu 46.9 1.1E+02 0.0036 26.1 9.3 93 2-96 111-207 (340)
201 4aby_A DNA repair protein RECN 46.2 35 0.0012 30.1 6.2 48 4-53 318-368 (415)
202 1g5t_A COB(I)alamin adenosyltr 45.1 8.9 0.0003 30.7 1.7 37 4-40 123-164 (196)
203 2vda_B Maltoporin; sugar trans 36.8 17 0.00058 18.2 1.3 17 90-106 8-24 (28)
204 2c9o_A RUVB-like 1; hexameric 35.4 1E+02 0.0035 27.7 7.6 91 4-99 298-408 (456)
205 3b9p_A CG5977-PA, isoform A; A 34.1 1.9E+02 0.0067 23.7 9.7 68 29-100 159-232 (297)
206 4h09_A Hypothetical leucine ri 30.7 62 0.0021 28.0 5.1 52 257-309 263-317 (379)
207 4fs7_A Uncharacterized protein 29.3 47 0.0016 29.1 4.1 49 257-307 320-371 (394)
208 2kjq_A DNAA-related protein; s 28.2 49 0.0017 24.6 3.5 33 4-38 86-124 (149)
209 1pgv_A TMD-1, tropomodulin TMD 27.5 13 0.00043 29.8 -0.1 13 257-269 98-110 (197)
210 3hu3_A Transitional endoplasmi 26.7 1.9E+02 0.0066 26.3 7.8 93 2-98 298-412 (489)
211 3cf0_A Transitional endoplasmi 25.2 2.9E+02 0.01 22.8 9.9 91 2-96 109-223 (301)
212 4fs7_A Uncharacterized protein 24.9 57 0.0019 28.5 3.8 49 257-307 343-393 (394)
213 3ec2_A DNA replication protein 24.5 19 0.00066 27.6 0.5 35 3-39 102-143 (180)
214 2gkw_B Tumor necrosis factor r 24.1 50 0.0017 16.4 1.8 17 23-39 4-20 (26)
215 3te6_A Regulatory protein SIR3 23.5 2.5E+02 0.0084 24.0 7.5 21 49-69 191-211 (318)
216 4gt6_A Cell surface protein; l 22.0 98 0.0034 26.9 4.8 49 257-307 311-362 (394)
217 1utg_A Uteroglobin; steroid bi 20.6 1.2E+02 0.0041 19.4 3.7 53 91-144 1-54 (70)
218 2bjv_A PSP operon transcriptio 20.2 1.7E+02 0.0057 23.7 5.6 60 4-64 103-189 (265)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.8e-37 Score=293.27 Aligned_cols=201 Identities=15% Similarity=0.134 Sum_probs=164.7
Q ss_pred CeEEEEEeCCCCHHHHHHHHhcCCCCCCCcEEEEEeCchhHHHhcC-CCceEEcCCCCHHHHHHHHHHhhcCCCCCCccH
Q 021517 1 MKVLIVFDDVTCFSQIESLIGSLDWLTPVSRIIITTRNKQVLRNWG-VRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGY 79 (311)
Q Consensus 1 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~ 79 (311)
|||||||||||+.+++ .+.. .+||+||||||++.++..++ ...+|+|++|+.++||+||.+.+|+... ++++
T Consensus 243 kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~ 315 (549)
T 2a5y_B 243 PNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKE 315 (549)
T ss_dssp TTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHH
T ss_pred CcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhH
Confidence 4999999999999876 2221 27999999999999999876 4468999999999999999999987543 4678
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhccccHHHHHHHHH-HHhccCcccHHHHHhhhcccCchhhhhhhh-----------
Q 021517 80 EELSCKVMKYAQGVPLALKVLGCFLHKREKEVWESATD-KLQRILYPSILEVLKISYDSLDDKEKNIFL----------- 147 (311)
Q Consensus 80 ~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~~~-~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl----------- 147 (311)
.+++++|+++|+|+||||+++|+.|+.++. +|...+. .++.....++..++.+||+.||+++|.||+
T Consensus 316 ~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~ 394 (549)
T 2a5y_B 316 EDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALA 394 (549)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTT
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhh
Confidence 889999999999999999999999987743 3322222 333335567999999999999999999999
Q ss_pred hhhcCCCCcCHHHHHHHHHHc--CCCcc-----------cchHHHhhcccceecC---CCcEEeCHHHHHHHHHHHhhhc
Q 021517 148 DVACFFQGEDVDLVMKFFNAS--GFYPE-----------IGMSVLVDKSLIAIDS---HKKITMHDLLQELGREIVRQES 211 (311)
Q Consensus 148 ~ls~fp~~~~~~~l~~~w~a~--g~~~~-----------~~~~~L~~~sl~~~~~---~~~~~mH~lv~~~~~~~~~~~~ 211 (311)
|||+||++++++ +.+|+|+ |++.. .++++|+++||++... .++|+|||+||+||++++.+++
T Consensus 395 ~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 395 FAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp GGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred heeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 999999998877 8999999 77742 2699999999999865 3479999999999998887664
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.1e-31 Score=278.29 Aligned_cols=199 Identities=20% Similarity=0.304 Sum_probs=171.2
Q ss_pred CeEEEEEeCCCCHHHHHHHHhcCCCCCCCcEEEEEeCchhHHHh-cCCCceEEcCC-CCHHHHHHHHHHhhcCCCCCCcc
Q 021517 1 MKVLIVFDDVTCFSQIESLIGSLDWLTPVSRIIITTRNKQVLRN-WGVRKIYEMKA-LEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 1 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~va~~-~~~~~~~~l~~-L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
|||||||||||+.++|+.+ ++||+||||||++.++.. .+....+.+++ |+++||++||...++.. .+.
T Consensus 236 ~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~ 305 (1249)
T 3sfz_A 236 PRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KED 305 (1249)
T ss_dssp CSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STT
T ss_pred CCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhh
Confidence 4999999999999887764 578999999999999855 45667899996 99999999999998543 234
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHhccccHHHHHHHHHHHhccC-----------cccHHHHHhhhcccCchhhhhhhh
Q 021517 79 YEELSCKVMKYAQGVPLALKVLGCFLHKREKEVWESATDKLQRIL-----------YPSILEVLKISYDSLDDKEKNIFL 147 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~~~~l~~~~-----------~~~i~~~l~~sy~~L~~~~k~cfl 147 (311)
+.+.+++|+++|+|+||||+++|++|+.++ ..|+.+++.+.... .+.+..++.+||+.||++.|.||+
T Consensus 306 ~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~ 384 (1249)
T 3sfz_A 306 LPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYT 384 (1249)
T ss_dssp CCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred CcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHH
Confidence 456799999999999999999999999875 47988888876543 145899999999999999999999
Q ss_pred hhhcCCCCcC--HHHHHHHHHHcCCCcccchHHHhhcccceecCCC---cEEeCHHHHHHHHHHHhhh
Q 021517 148 DVACFFQGED--VDLVMKFFNASGFYPEIGMSVLVDKSLIAIDSHK---KITMHDLLQELGREIVRQE 210 (311)
Q Consensus 148 ~ls~fp~~~~--~~~l~~~w~a~g~~~~~~~~~L~~~sl~~~~~~~---~~~mH~lv~~~~~~~~~~~ 210 (311)
|||+||+++. .+.++.+|.+++..++.++++|+++||++...++ +|+||++||+|+++.+.++
T Consensus 385 ~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 385 DLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9999999864 6899999988877788899999999999987655 4999999999999987665
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.96 E-value=1.6e-29 Score=249.08 Aligned_cols=180 Identities=16% Similarity=0.187 Sum_probs=149.6
Q ss_pred CeEEEEEeCCCCHHHHHHHHhcCCCCCCCcEEEEEeCchhHHHhcCCCceEEcC------CCCHHHHHHHHHHhhcCCCC
Q 021517 1 MKVLIVFDDVTCFSQIESLIGSLDWLTPVSRIIITTRNKQVLRNWGVRKIYEMK------ALEYHHAIRLFSRHAFKQNH 74 (311)
Q Consensus 1 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~va~~~~~~~~~~l~------~L~~~~a~~Lf~~~a~~~~~ 74 (311)
||+||||||||+.++|+.+. +||+||||||++.++..+.....|+++ +|+.+|||+||++.. +..
T Consensus 244 KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~- 314 (1221)
T 1vt4_I 244 ENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR- 314 (1221)
T ss_dssp SSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-
T ss_pred CCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-
Confidence 68999999999999998762 689999999999998755443456666 899999999999984 322
Q ss_pred CCccHHHHHHHHHHHhCCCchHHHHHHHHhccc--cHHHHHHHHHHHhccCcccHHHHHhhhcccCchhh-hhhhhhhhc
Q 021517 75 PDVGYEELSCKVMKYAQGVPLALKVLGCFLHKR--EKEVWESATDKLQRILYPSILEVLKISYDSLDDKE-KNIFLDVAC 151 (311)
Q Consensus 75 ~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~--~~~~w~~~~~~l~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~ls~ 151 (311)
. .++..++ |+|+||||+++|+.|+.+ +..+|+.. ....+..++.+||+.||++. |.||++||+
T Consensus 315 -~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAI 380 (1221)
T 1vt4_I 315 -P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380 (1221)
T ss_dssp -T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTS
T ss_pred -H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 1 2333443 999999999999999987 77889764 34679999999999999999 999999999
Q ss_pred CCCCcC--HHHHHHHHHHcCC-CcccchHHHhhcccceecC-CCcEEeCHHHHHHH
Q 021517 152 FFQGED--VDLVMKFFNASGF-YPEIGMSVLVDKSLIAIDS-HKKITMHDLLQELG 203 (311)
Q Consensus 152 fp~~~~--~~~l~~~w~a~g~-~~~~~~~~L~~~sl~~~~~-~~~~~mH~lv~~~~ 203 (311)
||+++. .+.++.+|+++|. .++.++++|+++||++... .++|+|||++++++
T Consensus 381 FPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 999865 5779999998863 3567899999999999864 57899999999865
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.95 E-value=9.8e-28 Score=231.44 Aligned_cols=195 Identities=21% Similarity=0.308 Sum_probs=159.6
Q ss_pred CeEEEEEeCCCCHHHHHHHHhcCCCCCCCcEEEEEeCchhHHHhcCCCceEEc---CCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 1 MKVLIVFDDVTCFSQIESLIGSLDWLTPVSRIIITTRNKQVLRNWGVRKIYEM---KALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 1 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~va~~~~~~~~~~l---~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
|++||||||||+.+.++.+ ++|++||||||+..++..++ ...+++ ++|+.+||++||...++.. ..
T Consensus 236 ~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~ 304 (591)
T 1z6t_A 236 PRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KA 304 (591)
T ss_dssp TTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GG
T ss_pred CCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cc
Confidence 4799999999998776543 46899999999999887654 234554 5899999999999998652 22
Q ss_pred cHHHHHHHHHHHhCCCchHHHHHHHHhccccHHHHHHHHHHHhccC-----------cccHHHHHhhhcccCchhhhhhh
Q 021517 78 GYEELSCKVMKYAQGVPLALKVLGCFLHKREKEVWESATDKLQRIL-----------YPSILEVLKISYDSLDDKEKNIF 146 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~~~~l~~~~-----------~~~i~~~l~~sy~~L~~~~k~cf 146 (311)
...+.+.+|+++|+|+||||+.+|+.++... ..|..+++.+.... ..++..++..||+.||++.|.||
T Consensus 305 ~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l 383 (591)
T 1z6t_A 305 DLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYY 383 (591)
T ss_dssp GSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHH
T ss_pred cccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHH
Confidence 2345789999999999999999999998764 36888888876532 24688999999999999999999
Q ss_pred hhhhcCCCCcC--HHHHHHHHHHcCCCcccchHHHhhcccceecCC---CcEEeCHHHHHHHHHHH
Q 021517 147 LDVACFFQGED--VDLVMKFFNASGFYPEIGMSVLVDKSLIAIDSH---KKITMHDLLQELGREIV 207 (311)
Q Consensus 147 l~ls~fp~~~~--~~~l~~~w~a~g~~~~~~~~~L~~~sl~~~~~~---~~~~mH~lv~~~~~~~~ 207 (311)
++||+||+++. .+.+..+|.+++...+.++++|+++||++...+ .+|+||+++|++++...
T Consensus 384 ~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 384 TDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 99999998754 678889998765556778999999999986643 37999999999999873
No 5
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.79 E-value=2.2e-08 Score=89.52 Aligned_cols=190 Identities=16% Similarity=0.142 Sum_probs=114.7
Q ss_pred eEEEEEeCCCCHH-----HHHHHHhcCCCCCCCcEEEEEeCchhHHHhc-----------CC-CceEEcCCCCHHHHHHH
Q 021517 2 KVLIVFDDVTCFS-----QIESLIGSLDWLTPVSRIIITTRNKQVLRNW-----------GV-RKIYEMKALEYHHAIRL 64 (311)
Q Consensus 2 r~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IlvTTR~~~va~~~-----------~~-~~~~~l~~L~~~~a~~L 64 (311)
+++||+||++... +|..+...+....++.++|+|+|........ +. ...+.+.+|+.+++.++
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHH
Confidence 6899999997642 2222222211112467899999987542211 11 25789999999999999
Q ss_pred HHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccc-cHHHHH-HHHHHHhccCcccHHHHHh-hhc--ccCc
Q 021517 65 FSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHKR-EKEVWE-SATDKLQRILYPSILEVLK-ISY--DSLD 139 (311)
Q Consensus 65 f~~~a~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~-~~~~w~-~~~~~l~~~~~~~i~~~l~-~sy--~~L~ 139 (311)
+...........+.. ..|++.|+|.|+++..++..+... +...|. .+.+... ..+...+. +.+ ..++
T Consensus 218 l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~ 289 (357)
T 2fna_A 218 LRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIAR 289 (357)
T ss_dssp HHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhcccccc
Confidence 987542111122222 789999999999999998876432 333332 1111110 11111111 111 1688
Q ss_pred hhhhhhhhhhhcCCCCcCHHHHHHHHH-HcC--CC---cccchHHHhhcccceecCCCcEE-eCHHHHHHH
Q 021517 140 DKEKNIFLDVACFFQGEDVDLVMKFFN-ASG--FY---PEIGMSVLVDKSLIAIDSHKKIT-MHDLLQELG 203 (311)
Q Consensus 140 ~~~k~cfl~ls~fp~~~~~~~l~~~w~-a~g--~~---~~~~~~~L~~~sl~~~~~~~~~~-mH~lv~~~~ 203 (311)
+..+..+..+|+- . ....+..... ..| .. ...+++.|++.+++...+ +.|+ .|++++++.
T Consensus 290 ~~~~~~l~~la~g--~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 290 KRYLNIMRTLSKC--G-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHTTC--B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred HHHHHHHHHHHcC--C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 8889999999882 2 5455543321 223 22 245799999999998774 6676 578888764
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.77 E-value=8.5e-08 Score=85.45 Aligned_cols=189 Identities=13% Similarity=0.161 Sum_probs=115.1
Q ss_pred eEEEEEeCCCCHH--------H-HHHHHhcCCCCCCCcEEEEEeCchhHHHhc-----------CC-CceEEcCCCCHHH
Q 021517 2 KVLIVFDDVTCFS--------Q-IESLIGSLDWLTPVSRIIITTRNKQVLRNW-----------GV-RKIYEMKALEYHH 60 (311)
Q Consensus 2 r~LlVLDdv~~~~--------~-~~~l~~~~~~~~~gs~IlvTTR~~~va~~~-----------~~-~~~~~l~~L~~~~ 60 (311)
+++||+||++... . +..+..... ..++.++|+|++...+.... +. ...+.+.+|+.+|
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e 207 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDT 207 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHH
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHH
Confidence 6899999998743 2 333332221 12477899999886542211 11 2479999999999
Q ss_pred HHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhcc-ccHHHH-HHHHHHHhccCcccHHHHHhhhcccC
Q 021517 61 AIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHK-REKEVW-ESATDKLQRILYPSILEVLKISYDSL 138 (311)
Q Consensus 61 a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~-~~~~~w-~~~~~~l~~~~~~~i~~~l~~sy~~L 138 (311)
+.+++.......+.. -..+.+..|.+.|+|.|+++..++..+.. .+...+ ..+.+.. ...+.-.+..+
T Consensus 208 ~~~~l~~~~~~~~~~--~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~l 277 (350)
T 2qen_A 208 SVEFLKRGFREVNLD--VPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVA--------KGLIMGELEEL 277 (350)
T ss_dssp HHHHHHHHHHTTTCC--CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHH--------HHHHHHHHHHH
Confidence 999998754221111 12356789999999999999999876532 222222 1111111 11111112222
Q ss_pred ---chhhhhhhhhhhcCCCCcCHHHHHHHHHHc--CCC---cccchHHHhhcccceecCCCcEEe-CHHHHHHHH
Q 021517 139 ---DDKEKNIFLDVACFFQGEDVDLVMKFFNAS--GFY---PEIGMSVLVDKSLIAIDSHKKITM-HDLLQELGR 204 (311)
Q Consensus 139 ---~~~~k~cfl~ls~fp~~~~~~~l~~~w~a~--g~~---~~~~~~~L~~~sl~~~~~~~~~~m-H~lv~~~~~ 204 (311)
++..+..+..+|. .......+....... |.. ...+++.|.+.+++... .+.|++ |++++++.+
T Consensus 278 ~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 278 RRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 6778888888887 234555665554322 232 24569999999999877 466665 788887753
No 7
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.44 E-value=2.5e-07 Score=74.42 Aligned_cols=60 Identities=10% Similarity=0.149 Sum_probs=53.1
Q ss_pred CCCCCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccc-cccCccccccccC
Q 021517 251 LQDPGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGIF 310 (311)
Q Consensus 251 p~~~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i~ 310 (311)
|..+.. ++|++|+|++|.+..+|..+ +|.+|++|+|++|.|+.+|.+ +.+|.+|++|++.
T Consensus 50 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 556667 99999999999999999875 699999999999999999986 8899999998875
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.42 E-value=1e-07 Score=84.75 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=46.3
Q ss_pred cccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 248 ISYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 248 ~~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
..+|..++. ++|++|+|++|.+..+|..+ ++.+|++|+|++|.++.+|.++++|++|++|+++
T Consensus 94 ~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 94 PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 356666666 77777777777777777777 6777777777777777777777777777777653
No 9
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.40 E-value=1.5e-07 Score=92.51 Aligned_cols=65 Identities=17% Similarity=0.061 Sum_probs=59.4
Q ss_pred cccccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 246 CKISYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 246 ~~~~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
....+|..+.. ++|++|+|++|.+..+|.+| +|.+|++|+|++|.|+.+|.++++|.+|++|+++
T Consensus 258 ~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 258 SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCC
Confidence 34478888877 99999999999999999999 7999999999999999999999999999999875
No 10
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.39 E-value=2e-06 Score=78.35 Aligned_cols=180 Identities=10% Similarity=0.075 Sum_probs=104.3
Q ss_pred CeEEEEEeCCCCH--------HHHHHHHhcCCCC---C--CCcEEEEEeCchhHHHhc---------CCCceEEcCCCCH
Q 021517 1 MKVLIVFDDVTCF--------SQIESLIGSLDWL---T--PVSRIIITTRNKQVLRNW---------GVRKIYEMKALEY 58 (311)
Q Consensus 1 kr~LlVLDdv~~~--------~~~~~l~~~~~~~---~--~gs~IlvTTR~~~va~~~---------~~~~~~~l~~L~~ 58 (311)
++++||+||++.. +.+..+...+... + .+..+|+||+...+.... .....+.+++++.
T Consensus 138 ~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~ 217 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS 217 (412)
T ss_dssp CEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH
T ss_pred CeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCH
Confidence 4789999999864 3344433332211 2 344588888766543211 1122399999999
Q ss_pred HHHHHHHHHhh---cCCCCCCccHHHHHHHHHHHhC------CCchHHHHHHHHh---c---cc---cHHHHHHHHHHHh
Q 021517 59 HHAIRLFSRHA---FKQNHPDVGYEELSCKVMKYAQ------GVPLALKVLGCFL---H---KR---EKEVWESATDKLQ 120 (311)
Q Consensus 59 ~~a~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~c~------glPLai~~~~~~L---~---~~---~~~~w~~~~~~l~ 120 (311)
++++++|...+ +.... -..+....|++.|+ |.|..+..+.... + +. +...+..+.....
T Consensus 218 ~e~~~ll~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 218 RELYTILEQRAELGLRDTV---WEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHHHHHHHHBCTTS---CCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCCCCC---CChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 99999997654 32211 12356788999999 9997655544322 1 11 2333433333211
Q ss_pred ccCcccHHHHHhhhcccCchhhhhhhhhhhcCC----CCcCHHHHHHHH-----HHcCCC------cccchHHHhhcccc
Q 021517 121 RILYPSILEVLKISYDSLDDKEKNIFLDVACFF----QGEDVDLVMKFF-----NASGFY------PEIGMSVLVDKSLI 185 (311)
Q Consensus 121 ~~~~~~i~~~l~~sy~~L~~~~k~cfl~ls~fp----~~~~~~~l~~~w-----~a~g~~------~~~~~~~L~~~sl~ 185 (311)
. ...+.-++..||++.+.++..++.+. ..+....+...+ ...|.. ...+++.|.+.+++
T Consensus 295 ~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli 368 (412)
T 1w5s_A 295 A------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLV 368 (412)
T ss_dssp -----------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSE
T ss_pred c------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCE
Confidence 0 23445577889999999998888653 223444444333 222321 13568999999999
Q ss_pred eecC
Q 021517 186 AIDS 189 (311)
Q Consensus 186 ~~~~ 189 (311)
....
T Consensus 369 ~~~~ 372 (412)
T 1w5s_A 369 DAKP 372 (412)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 8753
No 11
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.34 E-value=6.8e-07 Score=71.89 Aligned_cols=63 Identities=8% Similarity=-0.036 Sum_probs=54.6
Q ss_pred ccccCCCCCCCceeEEeeeCCCCCCCCC-CC-CCCCceEEEcCCCCcccccccc-ccCccccccccC
Q 021517 247 KISYLQDPGFAEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIERLWHCV-KVCISYYTCGIF 310 (311)
Q Consensus 247 ~~~lp~~~~~~~Lr~L~l~~~~i~~lP~-~i-~L~~L~~L~L~~~~i~~LP~~i-~~L~~L~~l~i~ 310 (311)
...+|..+. .+|++|+|+++.+..+|. .+ ++.+|++|+|++|+|+.+|.++ .+|.+|++|+++
T Consensus 24 l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 24 LASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp CSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 346676554 899999999999999955 56 7999999999999999999885 899999999875
No 12
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.33 E-value=6.2e-07 Score=71.78 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=53.8
Q ss_pred cc-CCCCCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccc-cccCccccccccC
Q 021517 249 SY-LQDPGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGIF 310 (311)
Q Consensus 249 ~l-p~~~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i~ 310 (311)
.+ |..+.. ++|++|+|++|.+..+|..+ +|.+|++|+|++|+|+.+|.+ +.+|.+|++|+++
T Consensus 44 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 44 KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 44 555666 99999999999999999875 699999999999999999985 8899999998875
No 13
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.29 E-value=1.1e-06 Score=73.90 Aligned_cols=54 Identities=13% Similarity=0.039 Sum_probs=32.7
Q ss_pred CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 257 AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
++|++|+|++|.+..+|..+ .+.+|++|+|++|+|+.+|.++.++.+|++|+++
T Consensus 88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALD 143 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECC
T ss_pred CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECC
Confidence 66666666666666665543 4666666666666666666666666666665543
No 14
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.24 E-value=2.7e-07 Score=90.73 Aligned_cols=64 Identities=14% Similarity=0.164 Sum_probs=58.4
Q ss_pred ccccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 247 KISYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 247 ~~~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
...+|..++. ++|++|+|++|.+..+|.+| +|.+|++|+|++|.|+.+|.++++|.+|++|+++
T Consensus 236 l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 236 IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECC
T ss_pred CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECC
Confidence 4467777777 99999999999999999999 8999999999999999999999999999999875
No 15
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.24 E-value=1.5e-06 Score=69.52 Aligned_cols=63 Identities=11% Similarity=0.067 Sum_probs=54.0
Q ss_pred ccccCCCCCCCceeEEeeeCCCCCCCCC-CC-CCCCceEEEcCCCCcccccccc-ccCccccccccC
Q 021517 247 KISYLQDPGFAEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIERLWHCV-KVCISYYTCGIF 310 (311)
Q Consensus 247 ~~~lp~~~~~~~Lr~L~l~~~~i~~lP~-~i-~L~~L~~L~L~~~~i~~LP~~i-~~L~~L~~l~i~ 310 (311)
...+|..+. ..|++|+|+++.+..+|. .+ ++.+|++|+|++|+|+.+|.++ .+|.+|++|+++
T Consensus 21 l~~ip~~~~-~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 21 LASVPTGIP-TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp CSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCccCccCC-CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 345676553 899999999999999954 56 7999999999999999999875 899999999875
No 16
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.21 E-value=1e-06 Score=68.63 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=40.1
Q ss_pred CCCCC-CceeEEeeeCCCCCC-CCCCC-CCCCceEEEcCCCCccccc--cccccCccccccccC
Q 021517 252 QDPGF-AEVKYLHWYGYPLKS-LPSNL-SAKKLVLVEVPDSDIERLW--HCVKVCISYYTCGIF 310 (311)
Q Consensus 252 ~~~~~-~~Lr~L~l~~~~i~~-lP~~i-~L~~L~~L~L~~~~i~~LP--~~i~~L~~L~~l~i~ 310 (311)
..+.. ++|++|++++|.+.. +|..+ ++.+|++|+|++|.++.+| ..++++++|++|+++
T Consensus 58 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 58 ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121 (149)
T ss_dssp TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence 34444 677777777777766 55555 4777777777777777765 667777777777664
No 17
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.21 E-value=8.4e-07 Score=84.72 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=34.7
Q ss_pred ccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCcccccccc
Q 021517 249 SYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGI 309 (311)
Q Consensus 249 ~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i 309 (311)
.+|. ++. ++|++|+|++|.+..+|..+ +|.+|++|+|++|.|+.+| ++++|++|++|++
T Consensus 455 ~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 455 VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence 3444 444 56666666666666666655 4666666666666666665 5566666655554
No 18
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.14 E-value=2.8e-06 Score=70.92 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=28.6
Q ss_pred CceeEEeeeCCCCCCCCC-CC-CCCCceEEEcCCCCccccccc-cccCcccccccc
Q 021517 257 AEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGI 309 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~-~i-~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i 309 (311)
++|++|+|++|.+..+|. .+ .+.+|++|+|++|.|+.+|.+ +..+.+|+++++
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 555555555555555533 23 455555555555555555543 455555555554
No 19
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.13 E-value=2.4e-06 Score=69.86 Aligned_cols=58 Identities=16% Similarity=0.075 Sum_probs=43.8
Q ss_pred CCCC-CceeEEeeeCCCCCCCCCC-C-CCCCceEEEcCCCCccccccc-cccCccccccccC
Q 021517 253 DPGF-AEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGIF 310 (311)
Q Consensus 253 ~~~~-~~Lr~L~l~~~~i~~lP~~-i-~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i~ 310 (311)
.+.. ++|++|+|++|.+..+|.. + +|.+|++|+|++|.|+.+|.+ +..|.+|+++++.
T Consensus 73 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 73 SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 3555 7888888888888877764 4 688888888888888888874 6678888877664
No 20
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.13 E-value=1.3e-06 Score=83.41 Aligned_cols=64 Identities=6% Similarity=0.006 Sum_probs=58.0
Q ss_pred cccccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCcccc--ccccccCccccccccC
Q 021517 246 CKISYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERL--WHCVKVCISYYTCGIF 310 (311)
Q Consensus 246 ~~~~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~L--P~~i~~L~~L~~l~i~ 310 (311)
....+|..++. ++|++|+|++|.++.+| .+ +|.+|++|+|++|.|+.+ |.++++|++|++|+++
T Consensus 474 ~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 474 RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 34578888888 99999999999999999 78 799999999999999999 8999999999999875
No 21
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.10 E-value=1.7e-06 Score=68.82 Aligned_cols=59 Identities=10% Similarity=0.064 Sum_probs=47.8
Q ss_pred CCCCC-CceeEEeeeCCCCCC-CCCCC-CCCCceEEEcCCCCccccc--cccccCccccccccC
Q 021517 252 QDPGF-AEVKYLHWYGYPLKS-LPSNL-SAKKLVLVEVPDSDIERLW--HCVKVCISYYTCGIF 310 (311)
Q Consensus 252 ~~~~~-~~Lr~L~l~~~~i~~-lP~~i-~L~~L~~L~L~~~~i~~LP--~~i~~L~~L~~l~i~ 310 (311)
..+.. ++|++|++++|.+.. +|..+ ++.+|++|+|++|.++.+| ..+.++++|++|+++
T Consensus 65 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~ 128 (168)
T 2ell_A 65 SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128 (168)
T ss_dssp SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECC
T ss_pred hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEee
Confidence 45555 889999999998887 55555 5889999999999888887 688888888888775
No 22
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.10 E-value=3.2e-06 Score=68.89 Aligned_cols=60 Identities=10% Similarity=0.038 Sum_probs=42.9
Q ss_pred CCCCCC-CceeEEeeeCCCCCCCCCC-C-CCCCceEEEcCCCCcccc-ccccccCccccccccC
Q 021517 251 LQDPGF-AEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERL-WHCVKVCISYYTCGIF 310 (311)
Q Consensus 251 p~~~~~-~~Lr~L~l~~~~i~~lP~~-i-~L~~L~~L~L~~~~i~~L-P~~i~~L~~L~~l~i~ 310 (311)
|..+.. ++|++|+|++|.+..+|.. + ++.+|++|+|++|.|+.+ |..+..+.+|++|++.
T Consensus 71 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 71 PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred HhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 455666 7777777777777777665 4 577777777777777766 5667777777777664
No 23
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.08 E-value=3e-06 Score=70.69 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=49.7
Q ss_pred CCCCCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccc-cccccCccccccccC
Q 021517 251 LQDPGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLW-HCVKVCISYYTCGIF 310 (311)
Q Consensus 251 p~~~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP-~~i~~L~~L~~l~i~ 310 (311)
|..+.. ++|++|+|++|.+..+|..+ .+.+|++|+|++|.|+.+| ..+.++.+|++|+++
T Consensus 73 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 566777 88999999999988888875 5889999999999888884 568888888888775
No 24
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.08 E-value=2.1e-06 Score=68.92 Aligned_cols=57 Identities=12% Similarity=0.010 Sum_probs=33.7
Q ss_pred CCCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCcccccc--ccccCcccccccc
Q 021517 253 DPGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWH--CVKVCISYYTCGI 309 (311)
Q Consensus 253 ~~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~--~i~~L~~L~~l~i 309 (311)
.+.. ++|++|++++|.+..+|+.+ .+.+|++|+|++|.|..+|. .++++++|++|++
T Consensus 59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 3444 56666666666666666544 36666666666666666665 5556666665554
No 25
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.07 E-value=2.1e-06 Score=68.17 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=47.7
Q ss_pred cCCCCCC-CceeEEeeeCCCCCCCC--CCC-CCCCceEEEcCCCCcccccc----ccccCccccccccC
Q 021517 250 YLQDPGF-AEVKYLHWYGYPLKSLP--SNL-SAKKLVLVEVPDSDIERLWH----CVKVCISYYTCGIF 310 (311)
Q Consensus 250 lp~~~~~-~~Lr~L~l~~~~i~~lP--~~i-~L~~L~~L~L~~~~i~~LP~----~i~~L~~L~~l~i~ 310 (311)
+|..+.. ++|++|++++|.+..+| ..+ ++.+|++|+|++|.+..+|. .+..+++|++|+++
T Consensus 87 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 87 LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 4444443 78888888888888887 566 68888888888888888887 78888888888764
No 26
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.06 E-value=1.3e-06 Score=67.96 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=30.2
Q ss_pred CceeEEeeeCCCCCCCC--CCC-CCCCceEEEcCCCCcccccc----ccccCcccccccc
Q 021517 257 AEVKYLHWYGYPLKSLP--SNL-SAKKLVLVEVPDSDIERLWH----CVKVCISYYTCGI 309 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP--~~i-~L~~L~~L~L~~~~i~~LP~----~i~~L~~L~~l~i 309 (311)
++|++|++++|.+..+| ..+ ++.+|++|+|++|.++.+|. .++.+++|++|++
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 55666666666555544 444 45566666666665555554 4555555555554
No 27
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.05 E-value=7.9e-06 Score=65.44 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=48.2
Q ss_pred cccCCC-CCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCcccccccc-ccCccccccccC
Q 021517 248 ISYLQD-PGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHCV-KVCISYYTCGIF 310 (311)
Q Consensus 248 ~~lp~~-~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~i-~~L~~L~~l~i~ 310 (311)
..+|.. +.. ++|++|++++|.+..+|... ++.+|++|+|++|.++.+|.++ .++++|+++++.
T Consensus 65 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 65 QSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred eEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 345544 445 88888888888888888764 5888888888888888888775 678888888764
No 28
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.03 E-value=6e-06 Score=69.24 Aligned_cols=60 Identities=13% Similarity=0.058 Sum_probs=52.4
Q ss_pred CCCCCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccc-cccCccccccccC
Q 021517 251 LQDPGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGIF 310 (311)
Q Consensus 251 p~~~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i~ 310 (311)
|..+.. ++|++|+|++|.+..+|... ++.+|++|+|++|.|+.+|.+ +..|.+|++|+++
T Consensus 57 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC 120 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEecc
Confidence 555666 99999999999999999775 699999999999999999976 4889999998875
No 29
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.03 E-value=4.7e-06 Score=67.93 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=53.3
Q ss_pred cccCCC--CCC-CceeEEeeeCCCCCCC-CCCC-CCCCceEEEcCCCCccccccc-cccCccccccccC
Q 021517 248 ISYLQD--PGF-AEVKYLHWYGYPLKSL-PSNL-SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGIF 310 (311)
Q Consensus 248 ~~lp~~--~~~-~~Lr~L~l~~~~i~~l-P~~i-~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i~ 310 (311)
..++.. +.. ++|++|+|++|.+..+ |..+ ++.+|++|+|++|+|+.+|.. +.+|++|++|+++
T Consensus 42 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 110 (192)
T 1w8a_A 42 GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110 (192)
T ss_dssp CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECC
T ss_pred CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 345543 555 9999999999999988 5667 799999999999999999876 8899999999875
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.02 E-value=3.7e-06 Score=80.62 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=28.3
Q ss_pred CceeEEeeeCCCCCCCCCC-C-CCCCceEEEcCCCCccccccc-cccCcccccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGI 309 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~-i-~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i 309 (311)
++|++|+|++|+++.+|.. + +|.+|++|+|++|+++.+|.. +++|++|++|++
T Consensus 100 ~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 100 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp TTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence 5555555555555555543 2 455555555555555555542 455555555554
No 31
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.02 E-value=8.9e-06 Score=66.91 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=33.8
Q ss_pred CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccc-cccCccccccccC
Q 021517 257 AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i~ 310 (311)
++|++|++++|.+..+|... ++.+|++|+|++|.++.+|.. +.++.+|+++++.
T Consensus 100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence 66666666666666666553 466666666666666666654 4566666666553
No 32
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.02 E-value=7.4e-06 Score=65.63 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=53.3
Q ss_pred ccCCC-CCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccc-cccCccccccccC
Q 021517 249 SYLQD-PGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~-~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i~ 310 (311)
.+|.. +.. ++|++|+++++.+..+|... .+.+|++|+|++|.++.+|.. +.++.+|++|++.
T Consensus 42 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 42 SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 45544 455 99999999999999999875 699999999999999999986 5889999999875
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.01 E-value=1.6e-06 Score=76.45 Aligned_cols=61 Identities=15% Similarity=0.100 Sum_probs=34.3
Q ss_pred ccCCCCCC-CceeEEeeeCCCCC-CCCCCC-CCCCceEEEcCCCCcc-ccccccccCc-ccccccc
Q 021517 249 SYLQDPGF-AEVKYLHWYGYPLK-SLPSNL-SAKKLVLVEVPDSDIE-RLWHCVKVCI-SYYTCGI 309 (311)
Q Consensus 249 ~lp~~~~~-~~Lr~L~l~~~~i~-~lP~~i-~L~~L~~L~L~~~~i~-~LP~~i~~L~-~L~~l~i 309 (311)
.+|..+.. ++|++|++++|.+. .+|..+ ++.+|++|+|++|.+. .+|.+++++. +|++|++
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEEC
Confidence 34444444 55666666655554 455555 4566666666665555 5555565555 5555554
No 34
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.99 E-value=6.4e-06 Score=68.67 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=39.0
Q ss_pred CCC-CceeEEeeeCCCCCCC-CCCC-CCCCceEEEcCCCCcccc-ccccccCccccccccC
Q 021517 254 PGF-AEVKYLHWYGYPLKSL-PSNL-SAKKLVLVEVPDSDIERL-WHCVKVCISYYTCGIF 310 (311)
Q Consensus 254 ~~~-~~Lr~L~l~~~~i~~l-P~~i-~L~~L~~L~L~~~~i~~L-P~~i~~L~~L~~l~i~ 310 (311)
+.. ++|++|+|++|.+..+ |..+ ++.+|++|+|++|.|+.+ |..+.+|.+|++|++.
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 444 7777777777777766 3445 577777777777777777 5667777777777654
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.98 E-value=2.4e-06 Score=75.83 Aligned_cols=62 Identities=13% Similarity=0.018 Sum_probs=42.5
Q ss_pred ccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCC-CccccccccccCccccccccC
Q 021517 249 SYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDS-DIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~-~i~~LP~~i~~L~~L~~l~i~ 310 (311)
.+|..+.. ++|++|++++|.+..+|..+ ++.+|++|+|++| ....+|..++++.+|++|+++
T Consensus 197 ~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 197 SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence 55666655 77777777777777777766 5777777777775 455667777777777776654
No 36
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.98 E-value=9.2e-06 Score=66.30 Aligned_cols=64 Identities=5% Similarity=0.001 Sum_probs=55.5
Q ss_pred ccccCCCCCC-CceeEEeeeCCCCCCCCCC-C-CCCCceEEEcCCCCcccccc-ccccCccccccccC
Q 021517 247 KISYLQDPGF-AEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERLWH-CVKVCISYYTCGIF 310 (311)
Q Consensus 247 ~~~lp~~~~~-~~Lr~L~l~~~~i~~lP~~-i-~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~l~i~ 310 (311)
...+|..+.. ++|++|+|++|.+..+|.. + +|.+|++|+|++|.|+.+|. .+.+|.+|++|+++
T Consensus 43 i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 43 FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 3467766777 9999999999999999865 5 79999999999999999986 58999999999875
No 37
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.97 E-value=3.8e-06 Score=67.33 Aligned_cols=53 Identities=9% Similarity=0.116 Sum_probs=48.4
Q ss_pred CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCcccccccc-ccCccccccccC
Q 021517 257 AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCV-KVCISYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i-~~L~~L~~l~i~ 310 (311)
++|++|++++|.+..+ +.+ .+.+|++|+|++|.|+.+|.++ +++++|++|+++
T Consensus 42 ~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp TCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred CCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 5999999999999998 567 7999999999999999999887 899999998875
No 38
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.96 E-value=5.6e-06 Score=73.75 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=32.9
Q ss_pred CCCC-CceeEEeeeCCCCCCCCCC-C-CCCCceEEEcCCCCccccccccccCcccccccc
Q 021517 253 DPGF-AEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGI 309 (311)
Q Consensus 253 ~~~~-~~Lr~L~l~~~~i~~lP~~-i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i 309 (311)
.+.. .+|++|+|++|.+..+|+. + +|.+|++|+|++|+|..+|.++....+|++|.+
T Consensus 51 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l 110 (347)
T 2ifg_A 51 DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVL 110 (347)
T ss_dssp GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEEC
T ss_pred HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEe
Confidence 3444 6666666666666655543 3 466666666666666666655544434555554
No 39
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.96 E-value=9.7e-06 Score=68.83 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=42.0
Q ss_pred ccCCC-CCC-CceeEEeeeCCCCCCCCCC-C-CCCCceEEEcCCCCcccccc-ccccCccccccccC
Q 021517 249 SYLQD-PGF-AEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERLWH-CVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~-~~~-~~Lr~L~l~~~~i~~lP~~-i-~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~l~i~ 310 (311)
.+|.. +.. ++|++|+|++|.+..+|.. + ++.+|++|+|++|.++.+|. .+.++.+|+++++.
T Consensus 121 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 44444 344 7777777777777777763 4 57777777777777777775 46677777777654
No 40
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.95 E-value=6e-06 Score=68.82 Aligned_cols=63 Identities=8% Similarity=-0.016 Sum_probs=54.0
Q ss_pred cccCC-CCCC-CceeEEeeeCCCCCCCCCC-C-CCCCceEEEcCCCCcccc-ccccccCccccccccC
Q 021517 248 ISYLQ-DPGF-AEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERL-WHCVKVCISYYTCGIF 310 (311)
Q Consensus 248 ~~lp~-~~~~-~~Lr~L~l~~~~i~~lP~~-i-~L~~L~~L~L~~~~i~~L-P~~i~~L~~L~~l~i~ 310 (311)
..++. .+.. ++|++|+|++|.+..+|.. + .+.+|++|+|++|+|+.+ |..+.++.+|++|+++
T Consensus 70 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 70 TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 34444 5666 9999999999999999887 5 799999999999999998 6789999999999875
No 41
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.92 E-value=1.3e-05 Score=65.95 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=49.7
Q ss_pred cccCCC-CCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccc-cccCccccccccC
Q 021517 248 ISYLQD-PGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGIF 310 (311)
Q Consensus 248 ~~lp~~-~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i~ 310 (311)
..+|.. +.. ++|++|++++|.+..+|..+ ++.+|++|+|++|.++.+|.. +.++.+|++|+++
T Consensus 65 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 65 QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC
Confidence 345554 345 88999999999888888764 688999999998888888876 5788888888764
No 42
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.92 E-value=1.6e-05 Score=69.17 Aligned_cols=63 Identities=21% Similarity=0.136 Sum_probs=46.1
Q ss_pred cccC-CCCCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCcccccccc-ccCccccccccC
Q 021517 248 ISYL-QDPGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHCV-KVCISYYTCGIF 310 (311)
Q Consensus 248 ~~lp-~~~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~i-~~L~~L~~l~i~ 310 (311)
..+| ..+.. ++|++|+|++|.+..+|..+ .+.+|++|+|++|.++.+|.++ .+|.+|++|+++
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECC
Confidence 3444 34555 78888888888888887765 5888888888888888888765 668888877764
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.90 E-value=1.1e-05 Score=77.20 Aligned_cols=60 Identities=13% Similarity=-0.030 Sum_probs=43.3
Q ss_pred CCCCCC-CceeEEeeeCCCCCCCC-CCC-CCCCceEEEcCCCCcc--ccccccccCccccccccC
Q 021517 251 LQDPGF-AEVKYLHWYGYPLKSLP-SNL-SAKKLVLVEVPDSDIE--RLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 251 p~~~~~-~~Lr~L~l~~~~i~~lP-~~i-~L~~L~~L~L~~~~i~--~LP~~i~~L~~L~~l~i~ 310 (311)
|..+.. ++|++|++++|.+..+| ..+ ++.+|++|+|++|.+. .+|..+++|++|++|+++
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence 556666 77777777777777776 445 6777777777777776 467777778888777664
No 44
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.89 E-value=1.5e-05 Score=67.63 Aligned_cols=63 Identities=19% Similarity=0.157 Sum_probs=50.6
Q ss_pred cccCCC-CCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCcccccc-ccccCccccccccC
Q 021517 248 ISYLQD-PGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWH-CVKVCISYYTCGIF 310 (311)
Q Consensus 248 ~~lp~~-~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~l~i~ 310 (311)
..+|.. +.. ++|++|+|++|.+..+|..+ ++.+|++|+|++|+++.+|. .++++++|++|+++
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 344443 455 88999999999998888875 58999999999999999887 58888999888775
No 45
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.85 E-value=2.3e-05 Score=68.12 Aligned_cols=64 Identities=9% Similarity=-0.026 Sum_probs=55.8
Q ss_pred ccccCCCC-CC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 247 KISYLQDP-GF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 247 ~~~lp~~~-~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
...+|... .. ++|++|+|++|.+.++|..+ ++.+|++|+|++|.++.+|.++..+.+|+++.++
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence 34556554 45 99999999999999999886 5999999999999999999999999999988764
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.84 E-value=9.3e-06 Score=77.78 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=25.4
Q ss_pred CceeEEeeeCCCCCCCCCC-C-CCCCceEEEcCCCCccccccc-cccCcccccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGI 309 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~-i-~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i 309 (311)
++|++|+|++|.|+.+|+. | +|.+|++|+|++|+|+.+|.+ +.+|.+|++|++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 4555555555555544432 3 355555555555555555432 344555554443
No 47
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.82 E-value=2.3e-05 Score=67.29 Aligned_cols=63 Identities=10% Similarity=0.006 Sum_probs=42.0
Q ss_pred cccCCCC-CC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccc-cccCccccccccC
Q 021517 248 ISYLQDP-GF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGIF 310 (311)
Q Consensus 248 ~~lp~~~-~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i~ 310 (311)
..+|..+ .. ++|++|+++++.+..+|..+ ++.+|++|+|++|.++.+|.. ++++++|++|+++
T Consensus 74 ~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 141 (270)
T 2o6q_A 74 QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141 (270)
T ss_dssp SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC
Confidence 3455443 33 77777777777777777654 577777777777777777654 4677777777654
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.82 E-value=2.5e-05 Score=68.91 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=35.9
Q ss_pred CCCC-CceeEEeeeCCCCCCC-CCCC-CCCCceEEEcCCCCccccccccccCcccccccc
Q 021517 253 DPGF-AEVKYLHWYGYPLKSL-PSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGI 309 (311)
Q Consensus 253 ~~~~-~~Lr~L~l~~~~i~~l-P~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i 309 (311)
.+.. ++|++|++++|.+..+ |..+ ++.+|++|+|++|.++++|.++. .+|++|++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEEC
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEEC
Confidence 4555 6777777777776666 5556 57777777777777777776654 45665554
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.82 E-value=1.1e-05 Score=70.98 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=51.3
Q ss_pred ccCCCCCCCceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 249 SYLQDPGFAEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~~~~~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
.+|.....++|++|+|++|.+..+|..+ .+.+|++|+|++|.++.+|..+..+++|++++++
T Consensus 183 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 183 DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp EEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred ccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEcc
Confidence 4444443488999999999999888888 7899999999999999999988889999888775
No 50
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.80 E-value=2.2e-05 Score=70.96 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=40.3
Q ss_pred CCCCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCcccccc-ccccCccccccccC
Q 021517 252 QDPGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWH-CVKVCISYYTCGIF 310 (311)
Q Consensus 252 ~~~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~l~i~ 310 (311)
..+.. ++|++|++++|.+..+|..+ ++.+|++|+|++|.+..+|. .++++++|++|+++
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred HHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 33455 77777777777777777664 47777777777777777654 46777777777654
No 51
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.80 E-value=2e-05 Score=75.48 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=46.5
Q ss_pred CCCCCC-CceeEEeeeCCCCCCC-CCCC-CCCCceEEEcCCCCccccc-cccccCccccccccC
Q 021517 251 LQDPGF-AEVKYLHWYGYPLKSL-PSNL-SAKKLVLVEVPDSDIERLW-HCVKVCISYYTCGIF 310 (311)
Q Consensus 251 p~~~~~-~~Lr~L~l~~~~i~~l-P~~i-~L~~L~~L~L~~~~i~~LP-~~i~~L~~L~~l~i~ 310 (311)
|..+.. ++|++|+|++|.+..+ |..+ +|.+|++|+|++|.+..+| ..+++|++|++|+++
T Consensus 73 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 136 (606)
T 3vq2_A 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECC
T ss_pred HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCC
Confidence 445666 8888888888888777 6667 6888888888888888877 678888888888764
No 52
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.78 E-value=3.8e-05 Score=65.86 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=44.9
Q ss_pred CCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccc-cccCccccccccC
Q 021517 254 PGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGIF 310 (311)
Q Consensus 254 ~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i~ 310 (311)
+.. ++|++|+|++|.+..+|... .+.+|++|+|++|.++.+|.. +.++++|++|+++
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence 455 88888888888888888764 688888888888888888864 6778888888764
No 53
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.77 E-value=1.6e-05 Score=64.91 Aligned_cols=60 Identities=8% Similarity=0.060 Sum_probs=43.2
Q ss_pred cCCCCCC-CceeEEeeeCCCCCC-CCCCC-CCCCceEEEcCCCC-ccccccccccCccccccccC
Q 021517 250 YLQDPGF-AEVKYLHWYGYPLKS-LPSNL-SAKKLVLVEVPDSD-IERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 250 lp~~~~~-~~Lr~L~l~~~~i~~-lP~~i-~L~~L~~L~L~~~~-i~~LP~~i~~L~~L~~l~i~ 310 (311)
.|..+.. ++|++|++++|.+.. .|..+ ++.+|++|+|++|. +..+| .+.++++|++|+++
T Consensus 104 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC
Confidence 4566666 778888888777764 55556 67778888888776 77777 57777777777664
No 54
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.76 E-value=1e-05 Score=66.02 Aligned_cols=59 Identities=8% Similarity=0.022 Sum_probs=51.1
Q ss_pred cCCCCCC-CceeEEeeeCCC-CCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 250 YLQDPGF-AEVKYLHWYGYP-LKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 250 lp~~~~~-~~Lr~L~l~~~~-i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
.|..+.. ++|++|++++|. +..+| .+ ++.+|++|+|++|.++.+| .+.++++|++|+++
T Consensus 128 ~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 128 ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEEC
T ss_pred hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEee
Confidence 4555666 899999999998 99998 56 7999999999999999998 79999999998874
No 55
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.76 E-value=0.00016 Score=60.16 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=71.4
Q ss_pred eEEEEEeCCCC--HHHHHHHHhcCCCCCCCcEEEEEeCchhHH-Hh-cCCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTC--FSQIESLIGSLDWLTPVSRIIITTRNKQVL-RN-WGVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IlvTTR~~~va-~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+.+||+||++. .+.++.+...+.....+..+|+||+..... .. ......+++++++.++..+++...+......
T Consensus 127 ~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~-- 204 (250)
T 1njg_A 127 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-- 204 (250)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--
T ss_pred ceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--
Confidence 57999999965 556777776665445678889888765421 11 1223589999999999999999877432211
Q ss_pred cHHHHHHHHHHHhCCCchHHHHHHHHh
Q 021517 78 GYEELSCKVMKYAQGVPLALKVLGCFL 104 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai~~~~~~L 104 (311)
-..+....|++.|+|.|..+..+...+
T Consensus 205 ~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 205 HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 123567889999999999888766543
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.76 E-value=2.7e-05 Score=74.74 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=43.1
Q ss_pred CCCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCcccccc-ccccCccccccccC
Q 021517 253 DPGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWH-CVKVCISYYTCGIF 310 (311)
Q Consensus 253 ~~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~l~i~ 310 (311)
.++. ++|++|+|++|.+..+|..+ ++.+|++|+|++|.+..+|. .++++++|++|+++
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 3455 78888888888888887765 57888888888887777765 47778888877764
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.75 E-value=8.2e-06 Score=71.76 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=29.8
Q ss_pred cCCCCCC-CceeEEeeeCCCCC-CCCCCC-CCCCceEEEcCCCCcc-ccccccccCcccccccc
Q 021517 250 YLQDPGF-AEVKYLHWYGYPLK-SLPSNL-SAKKLVLVEVPDSDIE-RLWHCVKVCISYYTCGI 309 (311)
Q Consensus 250 lp~~~~~-~~Lr~L~l~~~~i~-~lP~~i-~L~~L~~L~L~~~~i~-~LP~~i~~L~~L~~l~i 309 (311)
+|..+.. ++|++|+|++|.+. .+|..+ ++.+|++|+|++|.+. .+|..+.++++|++|++
T Consensus 93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 3444444 55555555555544 444444 4555555555555444 44555555555555444
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.75 E-value=2.6e-05 Score=73.88 Aligned_cols=59 Identities=15% Similarity=0.004 Sum_probs=47.1
Q ss_pred CCCCC-CceeEEeeeCCCCCCCCC-CC-CCCCceEEEcCCCCccc--cccccccCccccccccC
Q 021517 252 QDPGF-AEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIER--LWHCVKVCISYYTCGIF 310 (311)
Q Consensus 252 ~~~~~-~~Lr~L~l~~~~i~~lP~-~i-~L~~L~~L~L~~~~i~~--LP~~i~~L~~L~~l~i~ 310 (311)
..+.. ++|++|++++|.+..+|. .+ ++.+|++|+|++|.++. +|.++++|++|++|+++
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~ 157 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence 45666 888888888888888876 46 68888888888888875 68888888888888764
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.75 E-value=1e-05 Score=76.06 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=49.6
Q ss_pred CCCCCC-CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCccc--cccccccCccccccccC
Q 021517 251 LQDPGF-AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIER--LWHCVKVCISYYTCGIF 310 (311)
Q Consensus 251 p~~~~~-~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~--LP~~i~~L~~L~~l~i~ 310 (311)
|..+.. ++|++|+|++|.+..+|.. .+.+|++|+|++|.++. +|..+++|++|++|+++
T Consensus 62 ~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~ 123 (520)
T 2z7x_B 62 ISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123 (520)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEE
T ss_pred hHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEec
Confidence 566777 8899999999998888888 88899999999998886 56888999999888764
No 60
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.75 E-value=3.7e-07 Score=74.86 Aligned_cols=59 Identities=10% Similarity=-0.035 Sum_probs=37.7
Q ss_pred cCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 250 YLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 250 lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
+| .+.. ++|++|++++|.+..+|..+ .+.+|++|+|++|.++.+| +++++.+|++|+++
T Consensus 63 l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 63 IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEES
T ss_pred cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECC
Confidence 44 4444 66777777777666666655 4566777777777666666 46666666666553
No 61
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.75 E-value=2.3e-05 Score=70.28 Aligned_cols=62 Identities=8% Similarity=0.003 Sum_probs=40.8
Q ss_pred ccCC-CCCC-CceeEEeeeCCCCCCCC-CCC-CCCCceEEEcCCCCcccccccc----ccCccccccccC
Q 021517 249 SYLQ-DPGF-AEVKYLHWYGYPLKSLP-SNL-SAKKLVLVEVPDSDIERLWHCV----KVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~-~~~~-~~Lr~L~l~~~~i~~lP-~~i-~L~~L~~L~L~~~~i~~LP~~i----~~L~~L~~l~i~ 310 (311)
.+|. .+.. .+|++|+|++|.+..++ ..+ +|.+|++|+|++|.|+.+|..+ .++.+|++|+++
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 4444 3444 77777777777777664 445 5777777777777777777765 567777777664
No 62
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.74 E-value=3.5e-05 Score=66.19 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=46.8
Q ss_pred ccCCC-CCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccc-cccCccccccccC
Q 021517 249 SYLQD-PGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~-~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i~ 310 (311)
.+|.. +.. ++|++|++++|.+..+|..+ ++.+|++|+|++|+++.+|.. ++++++|++|+++
T Consensus 123 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 44443 455 88888888888888887764 588888888888888888765 4778888888764
No 63
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.73 E-value=1.3e-05 Score=79.20 Aligned_cols=62 Identities=10% Similarity=0.167 Sum_probs=46.4
Q ss_pred ccCCCCCC-CceeEEeeeCCCCC-CCCCCC-CCCCceEEEcCCCCcc-ccccccccCccccccccC
Q 021517 249 SYLQDPGF-AEVKYLHWYGYPLK-SLPSNL-SAKKLVLVEVPDSDIE-RLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~~~~-~~Lr~L~l~~~~i~-~lP~~i-~L~~L~~L~L~~~~i~-~LP~~i~~L~~L~~l~i~ 310 (311)
.+|..++. +.|++|+|++|.+. .+|.++ +|.+|++|||++|++. .+|.++++|++|++|+++
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 55666666 77777888777765 777777 6778888888877776 677777888877777764
No 64
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.73 E-value=1.8e-05 Score=75.33 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=45.0
Q ss_pred CCCCCC-CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCccccc--cccccCccccccccC
Q 021517 251 LQDPGF-AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLW--HCVKVCISYYTCGIF 310 (311)
Q Consensus 251 p~~~~~-~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP--~~i~~L~~L~~l~i~ 310 (311)
|..+.. ++|++|+|++|.+..+|.. .+.+|++|+|++|.+..+| ..+++|++|++|+++
T Consensus 93 ~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~ 154 (562)
T 3a79_B 93 FHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154 (562)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEE
T ss_pred HHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecC
Confidence 455666 7888888888888888877 7888888888888877765 678888888877654
No 65
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.73 E-value=1.8e-05 Score=74.79 Aligned_cols=58 Identities=14% Similarity=0.040 Sum_probs=35.0
Q ss_pred CCCCC-CceeEEeeeCCCCCCCCCC-C-CCCCceEEEcCCCCccc--cccccccCcccccccc
Q 021517 252 QDPGF-AEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIER--LWHCVKVCISYYTCGI 309 (311)
Q Consensus 252 ~~~~~-~~Lr~L~l~~~~i~~lP~~-i-~L~~L~~L~L~~~~i~~--LP~~i~~L~~L~~l~i 309 (311)
..+.. ++|++|+|++|.+..+|.. + ++.+|++|+|++|.++. .|..+++|++|++|++
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 130 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEEC
Confidence 34444 6666666666666666654 4 56666666666666663 3455666666666654
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.73 E-value=1.9e-05 Score=69.84 Aligned_cols=59 Identities=8% Similarity=-0.016 Sum_probs=40.8
Q ss_pred CCCCC-CceeEEeeeCCCCCCCCC-CC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 252 QDPGF-AEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 252 ~~~~~-~~Lr~L~l~~~~i~~lP~-~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
..+.. ++|++|++++|.+..+|. .+ .+.+|++|+|++|.++.+|.++.++++|++|+++
T Consensus 211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECC
T ss_pred HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECC
Confidence 44555 677777777777776665 34 5777777777777777777777777777777654
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.72 E-value=3.9e-05 Score=65.86 Aligned_cols=63 Identities=13% Similarity=0.030 Sum_probs=52.7
Q ss_pred cccCCC-CCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccc-cccCccccccccC
Q 021517 248 ISYLQD-PGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGIF 310 (311)
Q Consensus 248 ~~lp~~-~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i~ 310 (311)
..+|.. +.. ++|++|++++|.+..+|... ++.+|++|+|++|.++.+|.. +.++++|++|++.
T Consensus 146 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 146 QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence 345554 455 99999999999999998875 699999999999999999876 5889999998874
No 68
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.72 E-value=1.5e-05 Score=71.17 Aligned_cols=56 Identities=11% Similarity=0.030 Sum_probs=30.4
Q ss_pred CCC-CceeEEeeeCCCCCCCCCC-C-CCCCceEEEcCCCCcccccc--ccccCcccccccc
Q 021517 254 PGF-AEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERLWH--CVKVCISYYTCGI 309 (311)
Q Consensus 254 ~~~-~~Lr~L~l~~~~i~~lP~~-i-~L~~L~~L~L~~~~i~~LP~--~i~~L~~L~~l~i 309 (311)
+.. ++|++|++++|.+..+|.. + ++.+|++|+|++|.++.+|. .+.++++|++|++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l 156 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEEC
Confidence 444 5555555555555555554 3 45555555555555555554 4555555555543
No 69
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.72 E-value=1.8e-05 Score=75.18 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=51.0
Q ss_pred ccC-CCCCC-CceeEEeeeCCCCCCC-CCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 249 SYL-QDPGF-AEVKYLHWYGYPLKSL-PSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp-~~~~~-~~Lr~L~l~~~~i~~l-P~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
.+| ..+.. ++|++|+|++|.+..+ |..+ +|.+|++|+|++|.++.+|.. .|.+|++|+++
T Consensus 66 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 66 ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 344 46777 9999999999999888 4557 799999999999999999988 89999999875
No 70
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.72 E-value=3.6e-05 Score=68.00 Aligned_cols=55 Identities=11% Similarity=0.039 Sum_probs=31.2
Q ss_pred CCCC-CceeEEeeeCCCCCCC-CCCC-CCCCceEEEcCCCCccccccccccCcccccccc
Q 021517 253 DPGF-AEVKYLHWYGYPLKSL-PSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGI 309 (311)
Q Consensus 253 ~~~~-~~Lr~L~l~~~~i~~l-P~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i 309 (311)
.+.. ++|++|++++|.+..+ |..+ ++.+|++|+|++|.++.+|..+. .+|++|++
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEEC
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEEC
Confidence 4444 6666666666665555 3344 46666666666666666665554 45555544
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.71 E-value=2.6e-05 Score=68.39 Aligned_cols=59 Identities=10% Similarity=0.114 Sum_probs=43.7
Q ss_pred ccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 249 SYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
.++. +.. ++|++|++++|.+..+| .+ ++.+|++|+|++|.++.+|. +.++++|++|+++
T Consensus 77 ~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~ 137 (308)
T 1h6u_A 77 DLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLD 137 (308)
T ss_dssp CCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECC
T ss_pred CChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECC
Confidence 4444 555 78888888888877776 45 68888888888888888775 7888888877764
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.71 E-value=1.6e-05 Score=69.73 Aligned_cols=62 Identities=10% Similarity=0.037 Sum_probs=36.1
Q ss_pred ccCCCC--CC-CceeEEeeeCCCCCCCCCCC-CC-----CCceEEEcCCCCccccc-cccccCccccccccC
Q 021517 249 SYLQDP--GF-AEVKYLHWYGYPLKSLPSNL-SA-----KKLVLVEVPDSDIERLW-HCVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~~--~~-~~Lr~L~l~~~~i~~lP~~i-~L-----~~L~~L~L~~~~i~~LP-~~i~~L~~L~~l~i~ 310 (311)
.+|..+ .. ++|++|+|++|.+..+|..+ .+ .+|++|+|++|.+..+| ..++++++|++|+++
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 181 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECC
T ss_pred hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECC
Confidence 344444 33 66666666666666655555 34 56666666666666665 456666666666553
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.70 E-value=4.1e-05 Score=65.75 Aligned_cols=53 Identities=17% Similarity=0.084 Sum_probs=28.5
Q ss_pred CceeEEeeeCCCCCCCCC-CC-CCCCceEEEcCCCCccc--cccccccCcccccccc
Q 021517 257 AEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIER--LWHCVKVCISYYTCGI 309 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~-~i-~L~~L~~L~L~~~~i~~--LP~~i~~L~~L~~l~i 309 (311)
++|++|++++|.+..+|. .+ ++.+|++|+|++|.++. +|..++++++|++|++
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 555555555555555544 23 45555555555555554 4555555555555544
No 74
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.70 E-value=2.3e-05 Score=69.72 Aligned_cols=63 Identities=11% Similarity=-0.048 Sum_probs=55.5
Q ss_pred ccccCCCCCC-CceeEEeeeC-CCCCCCCC-CC-CCCCceEEEcCCCCcccccc-ccccCccccccccC
Q 021517 247 KISYLQDPGF-AEVKYLHWYG-YPLKSLPS-NL-SAKKLVLVEVPDSDIERLWH-CVKVCISYYTCGIF 310 (311)
Q Consensus 247 ~~~lp~~~~~-~~Lr~L~l~~-~~i~~lP~-~i-~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~l~i~ 310 (311)
...+|. +.. .+|++|+|++ +.+..+|. .+ +|.+|++|+|++|+|+.+|. .+.+|.+|++|+|+
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 456888 877 8999999997 89999995 56 79999999999999999987 46999999999886
No 75
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.69 E-value=4.5e-05 Score=68.96 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=33.4
Q ss_pred CCCC-CceeEEeeeCCCCCCCCCC-C-CCCCceEEEcCCCCcccccccc-ccCcccccccc
Q 021517 253 DPGF-AEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERLWHCV-KVCISYYTCGI 309 (311)
Q Consensus 253 ~~~~-~~Lr~L~l~~~~i~~lP~~-i-~L~~L~~L~L~~~~i~~LP~~i-~~L~~L~~l~i 309 (311)
.+.. ++|++|+|++|.+..+|.. + ++.+|++|+|++|.++.+|.++ +++++|++|++
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 4444 6666666666666655443 3 4666666666666666666554 55666666554
No 76
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.68 E-value=4.9e-05 Score=65.60 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=39.2
Q ss_pred CCC-CceeEEeeeCCCCCCCCCC-C-CCCCceEEEcCCCCcccc-ccccccCccccccccC
Q 021517 254 PGF-AEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERL-WHCVKVCISYYTCGIF 310 (311)
Q Consensus 254 ~~~-~~Lr~L~l~~~~i~~lP~~-i-~L~~L~~L~L~~~~i~~L-P~~i~~L~~L~~l~i~ 310 (311)
+.. ++|++|++++|.+..+|.. + ++.+|++|+|++|.+..+ |..+.++++|++|+++
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 444 6777777777777777664 4 577777777777777666 6667777777777654
No 77
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.68 E-value=3.3e-05 Score=68.92 Aligned_cols=63 Identities=11% Similarity=0.050 Sum_probs=53.7
Q ss_pred cccCC-CCCC-CceeEEeeeCCCCCCCCC-CC-CCCCceEEEcCCCCccccccc-cccCccccccccC
Q 021517 248 ISYLQ-DPGF-AEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGIF 310 (311)
Q Consensus 248 ~~lp~-~~~~-~~Lr~L~l~~~~i~~lP~-~i-~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i~ 310 (311)
..+|. .+.. ++|++|++++|.+..++. .+ ++.+|++|+|++|+++.+|.+ ++++++|++|+++
T Consensus 65 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 65 TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 34555 5666 999999999999998865 57 799999999999999999987 8899999999875
No 78
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.68 E-value=4.2e-05 Score=68.59 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=28.7
Q ss_pred CceeEEeeeCCCCCCCCCC-C-CCCCceEEEcCCCCcccc-ccccccCcccccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERL-WHCVKVCISYYTCGI 309 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~-i-~L~~L~~L~L~~~~i~~L-P~~i~~L~~L~~l~i 309 (311)
++|++|+|++|.+..+|.. + +|.+|++|+|++|.|..+ |..+.+|.+|++|++
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence 5555555555555555543 2 455555555555555555 344555555555544
No 79
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.68 E-value=4.8e-05 Score=65.65 Aligned_cols=60 Identities=15% Similarity=0.051 Sum_probs=48.8
Q ss_pred CCCCCC-CceeEEeeeCCCCCCCCCC-C-CCCCceEEEcCCCCccccccc-cccCccccccccC
Q 021517 251 LQDPGF-AEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGIF 310 (311)
Q Consensus 251 p~~~~~-~~Lr~L~l~~~~i~~lP~~-i-~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i~ 310 (311)
|..+.. ++|++|++++|.+..+|.. + ++.+|++|+|++|+++.+|.. +.++++|++|+++
T Consensus 122 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence 455666 8899999999888888876 4 688899999999888888874 7888888888765
No 80
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.67 E-value=3.3e-05 Score=73.23 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=49.4
Q ss_pred CCCCCC-CceeEEeeeCCCCCCCCC-CC-CCCCceEEEcCCCCcccccc-ccccCccccccccC
Q 021517 251 LQDPGF-AEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIERLWH-CVKVCISYYTCGIF 310 (311)
Q Consensus 251 p~~~~~-~~Lr~L~l~~~~i~~lP~-~i-~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~l~i~ 310 (311)
|..+.. ++|++|+|++|.+..+|. .+ ++.+|++|+|++|+++.+|. .+++|++|++|+++
T Consensus 69 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 132 (570)
T 2z63_A 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132 (570)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECC
T ss_pred cccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecC
Confidence 345666 899999999999888874 56 69999999999999998886 68899999988875
No 81
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.67 E-value=2.5e-05 Score=73.31 Aligned_cols=57 Identities=9% Similarity=0.061 Sum_probs=43.8
Q ss_pred CCCCC-CceeEEeeeCCCCCCC-CCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 252 QDPGF-AEVKYLHWYGYPLKSL-PSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 252 ~~~~~-~~Lr~L~l~~~~i~~l-P~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
..+.. ++|++|+|++|.+..+ |..+ +|.+|++|+|++|+|+.+|.. .+.+|++|+++
T Consensus 39 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 39 SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 34555 7888888888888777 5566 688888888888888888877 78888887764
No 82
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.67 E-value=3.3e-05 Score=71.71 Aligned_cols=60 Identities=12% Similarity=0.040 Sum_probs=44.1
Q ss_pred CCCCCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCcccc-ccccccCccccccccC
Q 021517 251 LQDPGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERL-WHCVKVCISYYTCGIF 310 (311)
Q Consensus 251 p~~~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~L-P~~i~~L~~L~~l~i~ 310 (311)
|..+.. ++|++|+|++|.+..+|..+ ++.+|++|+|++|.+..+ |..+.++.+|++|+++
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~ 136 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEEC
T ss_pred hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECC
Confidence 556666 78888888888887777654 578888888888877776 4467777788777664
No 83
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.67 E-value=2.3e-05 Score=69.18 Aligned_cols=57 Identities=5% Similarity=-0.053 Sum_probs=32.2
Q ss_pred CCCC-CceeEEeeeCCCCCCCCC-CC-CCCCceEEEcCCCCccccccccccCcccccccc
Q 021517 253 DPGF-AEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGI 309 (311)
Q Consensus 253 ~~~~-~~Lr~L~l~~~~i~~lP~-~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i 309 (311)
.+.. ++|++|++++|.+..+|. .+ ++.+|++|+|++|.+..+|.++.++++|++|++
T Consensus 211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 270 (330)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEEC
T ss_pred HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEEC
Confidence 3444 556666666665555544 33 455666666666666666665666666655554
No 84
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.67 E-value=2.4e-05 Score=75.69 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=48.1
Q ss_pred cCCCCC--C-CceeEEeeeCCC-CCCCCCCC-CCCCceEEEcCCCC-cc--ccccccccC------ccccccccC
Q 021517 250 YLQDPG--F-AEVKYLHWYGYP-LKSLPSNL-SAKKLVLVEVPDSD-IE--RLWHCVKVC------ISYYTCGIF 310 (311)
Q Consensus 250 lp~~~~--~-~~Lr~L~l~~~~-i~~lP~~i-~L~~L~~L~L~~~~-i~--~LP~~i~~L------~~L~~l~i~ 310 (311)
+|..++ . ++|++|+|++|. ...+|..+ +|.+|++|+|++|+ ++ .+|.++++| ++|++|+++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC
Confidence 788887 6 888888888887 45788888 68888888888886 77 488888776 788887764
No 85
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.66 E-value=3.2e-05 Score=66.23 Aligned_cols=58 Identities=19% Similarity=0.123 Sum_probs=39.8
Q ss_pred ccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 249 SYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
.+| .+.. ++|++|+|++|.+..+|. + ++.+|++|+|++|+++.+|.... .+|++|++.
T Consensus 55 ~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~ 114 (263)
T 1xeu_A 55 SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLD 114 (263)
T ss_dssp CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECC
T ss_pred cch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEcc
Confidence 344 3444 777777777777777776 6 67777777777777777775333 667766654
No 86
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.66 E-value=3.3e-05 Score=73.92 Aligned_cols=60 Identities=12% Similarity=-0.007 Sum_probs=38.1
Q ss_pred CCCCCC-CceeEEeeeCCCCCCC-CCCC-CCCCceEEEcCCCCcccc-ccccccCccccccccC
Q 021517 251 LQDPGF-AEVKYLHWYGYPLKSL-PSNL-SAKKLVLVEVPDSDIERL-WHCVKVCISYYTCGIF 310 (311)
Q Consensus 251 p~~~~~-~~Lr~L~l~~~~i~~l-P~~i-~L~~L~~L~L~~~~i~~L-P~~i~~L~~L~~l~i~ 310 (311)
|..+.. ++|++|+|++|.+..+ |..+ ++.+|++|+|++|.++.+ |..++++++|++|+++
T Consensus 74 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~ 137 (606)
T 3t6q_A 74 EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLG 137 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECC
T ss_pred hhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECC
Confidence 445555 6677777776666554 4455 566777777776666666 4566666777666653
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.66 E-value=3.8e-05 Score=65.93 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=39.8
Q ss_pred CCCC-CceeEEeeeCCCCCCCCC-CC-CCCCceEEEcCCCCcccccc-ccccCccccccccC
Q 021517 253 DPGF-AEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIERLWH-CVKVCISYYTCGIF 310 (311)
Q Consensus 253 ~~~~-~~Lr~L~l~~~~i~~lP~-~i-~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~l~i~ 310 (311)
.+.. ++|++|++++|.+..+|. .+ ++.+|++|++++|++..+|. .++++++|++|+++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 132 (276)
T 2z62_A 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132 (276)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECc
Confidence 4555 777777777777776663 34 57777777777777777765 57777777777654
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.65 E-value=3.7e-05 Score=66.82 Aligned_cols=55 Identities=16% Similarity=0.068 Sum_probs=39.1
Q ss_pred CCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 254 PGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 254 ~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
+.. ++|++|++++|.+..+|. + ++.+|++|+|++|.++.+| ++.++++|++|+++
T Consensus 86 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~ 142 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLG 142 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECC
T ss_pred cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEcc
Confidence 444 777777777777777665 5 6777777777777777764 57777777777664
No 89
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.65 E-value=4.1e-05 Score=66.74 Aligned_cols=53 Identities=11% Similarity=0.018 Sum_probs=23.8
Q ss_pred CceeEEeeeCCCCCCCCCC-C-CCCCceEEEcCCCCcccc-ccccccC-cccccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERL-WHCVKVC-ISYYTCGI 309 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~-i-~L~~L~~L~L~~~~i~~L-P~~i~~L-~~L~~l~i 309 (311)
++|++|++++|.+..+|.. + ++.+|++|+|++|.+... |..+.++ .+|++|++
T Consensus 199 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 4455555555544444432 2 344555555555444432 2334444 24444443
No 90
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.64 E-value=3.4e-05 Score=76.31 Aligned_cols=62 Identities=13% Similarity=0.062 Sum_probs=56.6
Q ss_pred ccCCCCCC-CceeEEeeeCCCCC-CCCCCC-CCCCceEEEcCCCCcc-ccccccccCccccccccC
Q 021517 249 SYLQDPGF-AEVKYLHWYGYPLK-SLPSNL-SAKKLVLVEVPDSDIE-RLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~~~~-~~Lr~L~l~~~~i~-~lP~~i-~L~~L~~L~L~~~~i~-~LP~~i~~L~~L~~l~i~ 310 (311)
.+|..++. ..|++|||++|.+. .+|..| +|..|++|+|++|.+. .+|.++++|++|++|+++
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 45667777 99999999999986 899999 8999999999999998 899999999999999986
No 91
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.64 E-value=3.9e-05 Score=76.64 Aligned_cols=60 Identities=7% Similarity=-0.020 Sum_probs=37.2
Q ss_pred CCCCCC-CceeEEeeeCCCCCCC-CCCC-CCCCceEEEcCCCCccc-cccc--cccCccccccccC
Q 021517 251 LQDPGF-AEVKYLHWYGYPLKSL-PSNL-SAKKLVLVEVPDSDIER-LWHC--VKVCISYYTCGIF 310 (311)
Q Consensus 251 p~~~~~-~~Lr~L~l~~~~i~~l-P~~i-~L~~L~~L~L~~~~i~~-LP~~--i~~L~~L~~l~i~ 310 (311)
|..+.. ++|++|+|++|.+..+ |..+ +|.+|++|+|++|.+.. +|.+ +++|++|++|+++
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls 131 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEE
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECC
Confidence 445555 6677777776666655 5555 56667777776666654 4444 6666666666553
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.63 E-value=4.8e-05 Score=66.69 Aligned_cols=56 Identities=11% Similarity=0.018 Sum_probs=47.6
Q ss_pred CCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 253 DPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 253 ~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
.+.. ++|++|++++|.+..+|. + ++.+|++|+|++|.+..+|. ++++.+|++|+++
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIG 159 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECC
T ss_pred hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEcc
Confidence 3555 899999999999988876 6 79999999999999999887 8888999888775
No 93
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.61 E-value=6.1e-05 Score=72.21 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=32.0
Q ss_pred CCCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCcccccccc-ccCcccccccc
Q 021517 253 DPGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHCV-KVCISYYTCGI 309 (311)
Q Consensus 253 ~~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~i-~~L~~L~~l~i 309 (311)
.+.. ++|++|+|++|.+..+|+.. ++.+|++|+|++|.+..+|.++ +++++|++|++
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 4444 55666666666555555443 4556666666666666665553 55555555554
No 94
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.61 E-value=5e-05 Score=70.15 Aligned_cols=59 Identities=17% Similarity=0.063 Sum_probs=46.4
Q ss_pred CCCCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCcccccc-ccccCccccccccC
Q 021517 252 QDPGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWH-CVKVCISYYTCGIF 310 (311)
Q Consensus 252 ~~~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~l~i~ 310 (311)
..+.. ++|++|+|++|.+..+|... ++.+|++|+|++|.++.+|. .+.++++|++|++.
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 179 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCC
Confidence 45555 88888888888888888764 58888888888888888876 57788888887764
No 95
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.61 E-value=4.6e-05 Score=67.59 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=36.1
Q ss_pred CCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 254 PGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 254 ~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
+.. ++|++|++++|.+..+| .+ ++.+|++|+|++|.+..+|. +.++++|++|++.
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLG 140 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECT
T ss_pred hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECC
Confidence 444 66777777777666665 34 57777777777777777665 6666677666553
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.59 E-value=3.5e-05 Score=72.11 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=49.2
Q ss_pred ccCCCCCCCceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 249 SYLQDPGFAEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~~~~~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
.+|.....++|++|+|++|.+..+|+.+ .+.+|++|+|++|.+..+|..++.+++|+++++.
T Consensus 183 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 183 DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245 (487)
T ss_dssp EEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred cccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcC
Confidence 3344333388888888888888888888 7888888888888888888888888888888764
No 97
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.59 E-value=5.3e-05 Score=69.78 Aligned_cols=58 Identities=9% Similarity=-0.004 Sum_probs=33.8
Q ss_pred CCCC-CceeEEeeeCCCCCCC-CCCC-CCCCceEEEcCCCCccc-cccc--cccCccccccccC
Q 021517 253 DPGF-AEVKYLHWYGYPLKSL-PSNL-SAKKLVLVEVPDSDIER-LWHC--VKVCISYYTCGIF 310 (311)
Q Consensus 253 ~~~~-~~Lr~L~l~~~~i~~l-P~~i-~L~~L~~L~L~~~~i~~-LP~~--i~~L~~L~~l~i~ 310 (311)
.+.. ++|++|+|++|.+..+ |..+ ++.+|++|+|++|++.. .|.. ++++++|++|+++
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 137 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECC
T ss_pred cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECC
Confidence 3444 6666666666666554 4455 56666666666666654 3333 6666666666553
No 98
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.59 E-value=4.7e-05 Score=70.66 Aligned_cols=54 Identities=7% Similarity=0.031 Sum_probs=36.4
Q ss_pred CCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCcccccccc
Q 021517 254 PGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGI 309 (311)
Q Consensus 254 ~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i 309 (311)
+.. ++|++|++++|.+..+|. + ++.+|++|+|++|.++.+|. +.++++|++|++
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLEL 141 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEE
T ss_pred hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEEC
Confidence 444 667777777776666665 5 57777777777777777765 667777776655
No 99
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.59 E-value=6.7e-05 Score=65.75 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=50.1
Q ss_pred CCC-CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 254 PGF-AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 254 ~~~-~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
+.. ++|++|+|++|.++.+|..+. .+|++|+|++|+|+.+|. +.++++|++|++.
T Consensus 249 ~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLK 304 (312)
T ss_dssp CCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCCC-TTTSCEEEEEECT
T ss_pred hhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCChh-HhhCCCCCEEecc
Confidence 344 899999999999999999887 899999999999999988 9999999999875
No 100
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.58 E-value=7e-05 Score=69.54 Aligned_cols=53 Identities=15% Similarity=0.057 Sum_probs=31.3
Q ss_pred CceeEEeeeCCCCCCCCC-CC-CCCCceEEEcCCCCccccc-cccccCcccccccc
Q 021517 257 AEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIERLW-HCVKVCISYYTCGI 309 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~-~i-~L~~L~~L~L~~~~i~~LP-~~i~~L~~L~~l~i 309 (311)
++|++|+|++|.+..++. .+ ++.+|++|+|++|.+..++ ..+.++.+|++|++
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence 666666666666655433 34 4666666666666665553 35566666666554
No 101
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.58 E-value=7.4e-05 Score=69.00 Aligned_cols=63 Identities=11% Similarity=0.152 Sum_probs=45.7
Q ss_pred cccCCC-CCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCC-Ccccccc-ccccCccccccccC
Q 021517 248 ISYLQD-PGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDS-DIERLWH-CVKVCISYYTCGIF 310 (311)
Q Consensus 248 ~~lp~~-~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~-~i~~LP~-~i~~L~~L~~l~i~ 310 (311)
..+|.. +.. ++|++|+|++|.+..+|... ++.+|++|+|+++ .+..+|. .+.++.+|++|+++
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence 345544 555 78888888888888887744 6888888888874 7777776 47778888877764
No 102
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.56 E-value=4.4e-05 Score=66.52 Aligned_cols=62 Identities=15% Similarity=0.057 Sum_probs=51.5
Q ss_pred ccCCCCCC-CceeEEeeeCCCCCCC-CCCC-CCCCceEEEcCCCCcccccc-ccccCccccccccC
Q 021517 249 SYLQDPGF-AEVKYLHWYGYPLKSL-PSNL-SAKKLVLVEVPDSDIERLWH-CVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~~~~-~~Lr~L~l~~~~i~~l-P~~i-~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~l~i~ 310 (311)
.+|..+.. ++|++|++++|.+..+ |..+ ++.+|++|+|++|.+..+|. .+.++.+|++|+++
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 36777777 8999999999998877 4566 79999999999999988876 67888899988775
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.56 E-value=9e-05 Score=70.65 Aligned_cols=59 Identities=12% Similarity=0.026 Sum_probs=49.4
Q ss_pred ccccCCCCCCCceeEEeeeCCCCCCCCCCC-CCCCc-------eEEEcCCCCccccccccccCccccccccC
Q 021517 247 KISYLQDPGFAEVKYLHWYGYPLKSLPSNL-SAKKL-------VLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 247 ~~~lp~~~~~~~Lr~L~l~~~~i~~lP~~i-~L~~L-------~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
...+|. +. ++|++|+|++|.++.+|. + + +| ++|+|++|.|+.+|.++.+|++|++|++.
T Consensus 172 L~~lp~-l~-~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 172 LTFLPE-LP-ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238 (571)
T ss_dssp CSCCCC-CC-TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECC
T ss_pred CCCcch-hh-CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEee
Confidence 344666 44 899999999999999999 7 4 66 99999999999999999999999999875
No 104
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.55 E-value=3.1e-05 Score=75.18 Aligned_cols=63 Identities=8% Similarity=0.092 Sum_probs=43.0
Q ss_pred cccCC-CCCC-CceeEEeeeCCCCCCCCC-CC-CCCCceEEEcCCCCccccc-cccccCccccccccC
Q 021517 248 ISYLQ-DPGF-AEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIERLW-HCVKVCISYYTCGIF 310 (311)
Q Consensus 248 ~~lp~-~~~~-~~Lr~L~l~~~~i~~lP~-~i-~L~~L~~L~L~~~~i~~LP-~~i~~L~~L~~l~i~ 310 (311)
..+|. .+.. ++|++|+|++|.+..+|. .+ ++.+|++|+|++|.+...| ..++++++|++|++.
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEcc
Confidence 34554 3555 777777777777777764 45 6777777777777766654 456777777777654
No 105
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.54 E-value=4.5e-05 Score=76.29 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=33.8
Q ss_pred cCCCCC--C-CceeEEeeeCCC-CCCCCCCC-CCCCceEEEcCCCC-ccc--cccccccCc-------cccccccC
Q 021517 250 YLQDPG--F-AEVKYLHWYGYP-LKSLPSNL-SAKKLVLVEVPDSD-IER--LWHCVKVCI-------SYYTCGIF 310 (311)
Q Consensus 250 lp~~~~--~-~~Lr~L~l~~~~-i~~lP~~i-~L~~L~~L~L~~~~-i~~--LP~~i~~L~-------~L~~l~i~ 310 (311)
+|..++ . ++|++|+|++|. ...+|..+ +|.+|++|+|++|+ ++. +|.++++|. +|++|+++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence 555554 4 556666666555 34555555 46666666666554 552 555555554 55555543
No 106
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.53 E-value=6.8e-05 Score=72.51 Aligned_cols=52 Identities=12% Similarity=0.064 Sum_probs=27.9
Q ss_pred ceeEEeeeCCCCCCCCCCC---CCCCceEEEcCCCCccccccccccCcccccccc
Q 021517 258 EVKYLHWYGYPLKSLPSNL---SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGI 309 (311)
Q Consensus 258 ~Lr~L~l~~~~i~~lP~~i---~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i 309 (311)
+|++|+|++|.+..+|..+ .+.+|++|+|++|.++.+|.++.++++|++|++
T Consensus 489 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543 (636)
T ss_dssp GCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEEC
T ss_pred CccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEEC
Confidence 5555555555555555544 355555555555555555555555555555544
No 107
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.52 E-value=4.1e-05 Score=72.33 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=24.9
Q ss_pred CceeEEeeeCCCCCCCCC-CC-CCCCceEEEcCCCCccccccc-cccCcccccccc
Q 021517 257 AEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGI 309 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~-~i-~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i 309 (311)
++|++|++++|.+..+|. .+ ++.+|++|+|++|.+..+|.. +++|++|++|++
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 445555555544444442 23 344555555555444444443 444444444443
No 108
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.52 E-value=6.3e-05 Score=63.13 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=49.9
Q ss_pred ccccCC-CCCC-CceeEEeeeCCC-CCCCCCC-C-CCCCceEEEcCC-CCcccccc-ccccCccccccccC
Q 021517 247 KISYLQ-DPGF-AEVKYLHWYGYP-LKSLPSN-L-SAKKLVLVEVPD-SDIERLWH-CVKVCISYYTCGIF 310 (311)
Q Consensus 247 ~~~lp~-~~~~-~~Lr~L~l~~~~-i~~lP~~-i-~L~~L~~L~L~~-~~i~~LP~-~i~~L~~L~~l~i~ 310 (311)
...+|. .+.. ++|++|++++++ ++.+|.. + ++.+|++|+|++ +.++.+|. .+.++++|++|++.
T Consensus 43 l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~ 113 (239)
T 2xwt_C 43 LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113 (239)
T ss_dssp CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE
T ss_pred ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC
Confidence 345555 4555 899999999997 8888874 4 789999999988 78988885 56788888888763
No 109
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.50 E-value=4.8e-05 Score=75.97 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=44.5
Q ss_pred cCCCCCC-CceeEEeeeCCCCCC-CCCC--C-CCCCceEEEcCCCCccccc--cccccCccccccccC
Q 021517 250 YLQDPGF-AEVKYLHWYGYPLKS-LPSN--L-SAKKLVLVEVPDSDIERLW--HCVKVCISYYTCGIF 310 (311)
Q Consensus 250 lp~~~~~-~~Lr~L~l~~~~i~~-lP~~--i-~L~~L~~L~L~~~~i~~LP--~~i~~L~~L~~l~i~ 310 (311)
.|..+.. ++|++|+|++|.+.. +|.. + +|.+|++|+|++|.+..++ ..+++|++|++|+++
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 3666777 888888888888764 5554 5 6888888888888777764 467888888877653
No 110
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.49 E-value=0.0001 Score=70.44 Aligned_cols=57 Identities=19% Similarity=0.106 Sum_probs=44.2
Q ss_pred CCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCcccc-ccccccCccccccccC
Q 021517 254 PGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERL-WHCVKVCISYYTCGIF 310 (311)
Q Consensus 254 ~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~L-P~~i~~L~~L~~l~i~ 310 (311)
+.. ++|++|++++|.+..+|..+ ++.+|++|+|++|.+..+ |..+.++++|++|++.
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 555 88888888888888888888 688888888888887776 4567777777777654
No 111
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.49 E-value=5.8e-05 Score=66.35 Aligned_cols=54 Identities=6% Similarity=-0.023 Sum_probs=49.8
Q ss_pred CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 257 AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
++|++|++++|.+..+|....+.+|++|+|++|.++.+|.++..+++|++|+++
T Consensus 169 ~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222 (317)
T ss_dssp TTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT
T ss_pred CcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECc
Confidence 889999999999999987778999999999999999999999999999999875
No 112
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.49 E-value=0.0061 Score=54.54 Aligned_cols=172 Identities=16% Similarity=0.058 Sum_probs=101.9
Q ss_pred EEEEEeCCCCHHH-------HHHHHhcCCCCCCCcEEEEEeCchhHHH----hc--CCCceEEcCCCCHHHHHHHHHHhh
Q 021517 3 VLIVFDDVTCFSQ-------IESLIGSLDWLTPVSRIIITTRNKQVLR----NW--GVRKIYEMKALEYHHAIRLFSRHA 69 (311)
Q Consensus 3 ~LlVLDdv~~~~~-------~~~l~~~~~~~~~gs~IlvTTR~~~va~----~~--~~~~~~~l~~L~~~~a~~Lf~~~a 69 (311)
.+|||||++.... +..+.... .+..||+||+...... .. .....+.+++++.++..++|...+
T Consensus 135 ~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~ 210 (384)
T 2qby_B 135 AIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYA 210 (384)
T ss_dssp EEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHH
T ss_pred CEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 3899999986543 22333222 6778999998753211 11 112389999999999999999875
Q ss_pred c---CCCCCCccHHHHHHHHHHHhC---CCch-HHHHHHHHh--c---c-ccHHHHHHHHHHHhccCcccHHHHHhhhcc
Q 021517 70 F---KQNHPDVGYEELSCKVMKYAQ---GVPL-ALKVLGCFL--H---K-REKEVWESATDKLQRILYPSILEVLKISYD 136 (311)
Q Consensus 70 ~---~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~~~~L--~---~-~~~~~w~~~~~~l~~~~~~~i~~~l~~sy~ 136 (311)
. .....++ +....+++.|+ |.|. |+..+.... + . -+.+.+..+++... ...+.-++.
T Consensus 211 ~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~ 280 (384)
T 2qby_B 211 EYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVK 280 (384)
T ss_dssp HHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHH
Confidence 3 2222233 44566777777 8776 444333322 2 1 26677777666542 234566778
Q ss_pred cCchhhhhhhhhhhcCCCCcCH-HHHHHHHHHcCCCc------ccchHHHhhcccceec
Q 021517 137 SLDDKEKNIFLDVACFFQGEDV-DLVMKFFNASGFYP------EIGMSVLVDKSLIAID 188 (311)
Q Consensus 137 ~L~~~~k~cfl~ls~fp~~~~~-~~l~~~w~a~g~~~------~~~~~~L~~~sl~~~~ 188 (311)
.|+++.+..+..++....+-+. +....+-...|... ..+++.|.+.+++...
T Consensus 281 ~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 281 ALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp SSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 8888888777766661110111 12222222333221 3457889999999875
No 113
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.48 E-value=7.2e-05 Score=68.83 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=45.3
Q ss_pred CCCCC-CceeEEeeeCCCCCCCCCC-C-CCCCceEEEcCCCCcccccc-ccccCccccccccC
Q 021517 252 QDPGF-AEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERLWH-CVKVCISYYTCGIF 310 (311)
Q Consensus 252 ~~~~~-~~Lr~L~l~~~~i~~lP~~-i-~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~l~i~ 310 (311)
..+.. ++|++|+|++|.+..+|.. + ++.+|++|+|++|.|..+|. .+.++.+|++|++.
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence 34555 7888888888888888874 4 68888888888888888876 57778888887764
No 114
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.48 E-value=1.5e-06 Score=71.23 Aligned_cols=61 Identities=8% Similarity=-0.046 Sum_probs=38.2
Q ss_pred ccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCcccccc--ccccCccccccccC
Q 021517 249 SYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWH--CVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~--~i~~L~~L~~l~i~ 310 (311)
.+|..+.. ++|++|++++|.+..+| .+ ++.+|++|+|++|.+..+|. .+.++++|+++++.
T Consensus 84 ~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 84 KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence 34444444 66777777777666666 45 56667777777766666654 56666666666553
No 115
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.48 E-value=6.8e-05 Score=69.53 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=31.7
Q ss_pred CCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccc
Q 021517 254 PGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCG 308 (311)
Q Consensus 254 ~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~ 308 (311)
+.. ++|++|++++|.+..+|. + ++.+|++|+|++|.+..+|. ++++.+|++|.
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 162 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLS 162 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEE
T ss_pred hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEee
Confidence 444 666666666666666654 4 56666666666666666553 56666666554
No 116
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.48 E-value=5.7e-05 Score=75.51 Aligned_cols=53 Identities=4% Similarity=0.046 Sum_probs=24.5
Q ss_pred CceeEEeeeCCCCCCCCCCC-CCCC-ceEEEcCCCCccccccccccCcc--cccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNL-SAKK-LVLVEVPDSDIERLWHCVKVCIS--YYTCGI 309 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i-~L~~-L~~L~L~~~~i~~LP~~i~~L~~--L~~l~i 309 (311)
++|++|+|++|.+..+|.++ ++.+ |++|+|++|.+..+|..+..+.. |++|++
T Consensus 595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEEC
T ss_pred CcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEEC
Confidence 44444444444444444444 3444 44444444444444444444332 444443
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.48 E-value=8.4e-05 Score=63.60 Aligned_cols=61 Identities=11% Similarity=-0.085 Sum_probs=51.5
Q ss_pred ccccCCCCCC-CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 247 KISYLQDPGF-AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 247 ~~~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
...+|. +.. ++|++|++++|.+..+|.... .+|++|+|++|.++.+| ++.++.+|++|+++
T Consensus 75 i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 75 ISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIR 136 (263)
T ss_dssp CCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECT
T ss_pred cCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECC
Confidence 334555 666 999999999999999987557 89999999999999987 59999999999875
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.47 E-value=9.6e-05 Score=68.53 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=36.2
Q ss_pred CCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 254 PGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 254 ~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
+.. ++|++|++++|.+..+| + ++.+|++|+|++|.++.+| ++++++|++|++.
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCA 135 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECT
T ss_pred cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECC
Confidence 444 67777777777776665 5 5777777777777777765 6777777776653
No 119
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.46 E-value=0.00014 Score=70.03 Aligned_cols=52 Identities=27% Similarity=0.203 Sum_probs=47.8
Q ss_pred CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 257 AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
++|++|++++|.+..+|. .+.+|++|+|++|+|+.+|.++++|++|++|++.
T Consensus 241 ~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 241 SELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred CcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence 789999999999999988 6788999999999999999999999999999875
No 120
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.45 E-value=7.6e-05 Score=68.69 Aligned_cols=59 Identities=7% Similarity=0.015 Sum_probs=37.6
Q ss_pred CCCCC-CceeEEeeeCCCCCCC-CCCC-CCCCceEEEcCCCCcccccccc-ccCccccccccC
Q 021517 252 QDPGF-AEVKYLHWYGYPLKSL-PSNL-SAKKLVLVEVPDSDIERLWHCV-KVCISYYTCGIF 310 (311)
Q Consensus 252 ~~~~~-~~Lr~L~l~~~~i~~l-P~~i-~L~~L~~L~L~~~~i~~LP~~i-~~L~~L~~l~i~ 310 (311)
..+.. ++|++|+|++|.+..+ |..+ ++.+|++|+|++|+++.+|.++ .++++|++|++.
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence 34444 6677777777766655 4455 5777777777777777776543 566677666653
No 121
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.45 E-value=0.0001 Score=67.82 Aligned_cols=64 Identities=11% Similarity=0.098 Sum_probs=49.4
Q ss_pred ccccCC-CCCC-CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCC-Ccccccc-ccccCccccccccC
Q 021517 247 KISYLQ-DPGF-AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDS-DIERLWH-CVKVCISYYTCGIF 310 (311)
Q Consensus 247 ~~~lp~-~~~~-~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~-~i~~LP~-~i~~L~~L~~l~i~ 310 (311)
...+|. .+.. ++|++|+|++|.+..+|... ++.+|++|+|+++ .+..+|. .+.+|.+|++|+++
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 345554 3555 88999999999988888754 6889999999885 7888876 57888888888764
No 122
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.45 E-value=8.9e-05 Score=71.25 Aligned_cols=55 Identities=15% Similarity=0.057 Sum_probs=44.6
Q ss_pred CCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 254 PGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 254 ~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
+.. ++|++|+|++|.+..+| .+ +|.+|++|+|++|.+..+| ++.+|.+|++|+++
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLG 139 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECC
T ss_pred hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECC
Confidence 444 88888888888888877 56 7888888888888888876 58888888888775
No 123
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.43 E-value=0.0001 Score=64.06 Aligned_cols=59 Identities=10% Similarity=0.026 Sum_probs=49.3
Q ss_pred ccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 249 SYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
.+|. +.. ++|++|++++|.+..+| .+ ++.+|++|+|++|.++.+ ..++++++|++|+++
T Consensus 104 ~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 104 DLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLE 164 (291)
T ss_dssp CGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECC
T ss_pred CChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEcc
Confidence 3443 566 99999999999999885 45 799999999999999998 479999999998875
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.40 E-value=0.00018 Score=69.32 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=27.2
Q ss_pred CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCcccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWH 296 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~ 296 (311)
++|++|+|++|.++.+|. .+.+|++|+|++|+++.+|.
T Consensus 81 ~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~ 118 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA 118 (622)
T ss_dssp TTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC
T ss_pred CCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC
Confidence 677777777777777776 56667777777777777766
No 125
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.37 E-value=0.00015 Score=63.44 Aligned_cols=58 Identities=12% Similarity=0.065 Sum_probs=49.0
Q ss_pred CCCCCC----CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 251 LQDPGF----AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 251 p~~~~~----~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
|..+.. ++|++|+|++|.++.+|..+. .+|++|+|++|+|+.+|. ...+++|+.|++.
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~ 302 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLD 302 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCCCCSCCC-TTSCCCCSCEECS
T ss_pred hhhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCcCCCCch-hhhCCCccEEECc
Confidence 555544 599999999999999998884 789999999999999986 7888999988875
No 126
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.35 E-value=0.00016 Score=64.01 Aligned_cols=56 Identities=5% Similarity=-0.060 Sum_probs=38.4
Q ss_pred CCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 254 PGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 254 ~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
+.. ++|++|++++|.+..+|. + ++.+|++|++++|.....+..+.++++|++|++.
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~ 163 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVT 163 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECC
T ss_pred HcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEec
Confidence 444 777788887777777776 5 6777777787777333334447777777777654
No 127
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.32 E-value=0.0003 Score=68.21 Aligned_cols=56 Identities=13% Similarity=-0.048 Sum_probs=27.4
Q ss_pred CCC-CceeEEeeeCCCCCCCCC-CC-CCCCceEEEcCCCCccccccc---cccCcccccccc
Q 021517 254 PGF-AEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIERLWHC---VKVCISYYTCGI 309 (311)
Q Consensus 254 ~~~-~~Lr~L~l~~~~i~~lP~-~i-~L~~L~~L~L~~~~i~~LP~~---i~~L~~L~~l~i 309 (311)
+.. ++|++|++++|.+..+|. .+ ++.+|++|+|++|.++.+|.. ..++.+|++|++
T Consensus 117 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence 444 555555555555544432 23 455555555555555555432 123345555544
No 128
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.30 E-value=0.00012 Score=68.51 Aligned_cols=61 Identities=5% Similarity=-0.029 Sum_probs=53.7
Q ss_pred cCCCCC-C-CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 250 YLQDPG-F-AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 250 lp~~~~-~-~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
.|..+. . ++|++|+|++|.+..+|....+.+|++|+|++|.++.+|.++..+.+|++|+++
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls 222 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT
T ss_pred ChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEec
Confidence 455554 4 899999999999999987778999999999999999999999999999999875
No 129
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.27 E-value=0.00018 Score=66.67 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=50.2
Q ss_pred cccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 248 ISYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 248 ~~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
..+| .+.. ++|++|++++|.+..+| + ++.+|++|+|++|.++.+| ++++++|++|+++
T Consensus 55 ~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 55 TDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp CCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred ccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 3455 4666 99999999999999987 7 7999999999999999986 8999999999875
No 130
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.26 E-value=0.00023 Score=68.40 Aligned_cols=59 Identities=10% Similarity=0.028 Sum_probs=50.7
Q ss_pred ccCCCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccCccccccccC
Q 021517 249 SYLQDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 249 ~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
.+| .+.. ++|++|+|++|.+..+|. + .|.+|++|+|++|.+..+ ..+++|.+|++|+++
T Consensus 101 ~l~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 101 DLS-SLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLE 161 (605)
T ss_dssp CCT-TSTTCTTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECC
T ss_pred CCh-hhccCCCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECc
Confidence 344 5666 999999999999998864 6 899999999999999999 579999999999875
No 131
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.25 E-value=0.00016 Score=63.16 Aligned_cols=52 Identities=8% Similarity=0.039 Sum_probs=45.5
Q ss_pred CceeEEeeeCCCCCCC-CCCC-CC---CCceEEEcCCCCccccccccccCccccccccC
Q 021517 257 AEVKYLHWYGYPLKSL-PSNL-SA---KKLVLVEVPDSDIERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~l-P~~i-~L---~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i~ 310 (311)
++|++|+|++|.+..+ |+.+ .+ .+|++|+|++|.++.+|.++. ++|++|+++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLS 280 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECC
Confidence 8899999999999887 8877 54 699999999999999999886 788888775
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.22 E-value=0.00043 Score=64.03 Aligned_cols=57 Identities=14% Similarity=0.037 Sum_probs=35.9
Q ss_pred ccCCCCCC-CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCccccccccccCcccccccc
Q 021517 249 SYLQDPGF-AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKVCISYYTCGI 309 (311)
Q Consensus 249 ~lp~~~~~-~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i 309 (311)
.+| .++. ++|++|++++|.+..+|..+ .+|++|+|++|.++.+| +++++++|++|++
T Consensus 145 ~lp-~~~~l~~L~~L~l~~N~l~~lp~~~--~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 145 KLP-ELQNSSFLKIIDVDNNSLKKLPDLP--PSLEFIAAGNNQLEELP-ELQNLPFLTAIYA 202 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred CCc-ccCCCCCCCEEECCCCcCcccCCCc--ccccEEECcCCcCCcCc-cccCCCCCCEEEC
Confidence 355 3555 67777777777666666544 35666666666666666 4666666666655
No 133
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.19 E-value=0.0039 Score=55.58 Aligned_cols=180 Identities=13% Similarity=0.060 Sum_probs=99.4
Q ss_pred eEEEEEeCCCCHH------HHHHHHhcCCC-CCCCcEEEEEeCchhHHHhcC------C-CceEEcCCCCHHHHHHHHHH
Q 021517 2 KVLIVFDDVTCFS------QIESLIGSLDW-LTPVSRIIITTRNKQVLRNWG------V-RKIYEMKALEYHHAIRLFSR 67 (311)
Q Consensus 2 r~LlVLDdv~~~~------~~~~l~~~~~~-~~~gs~IlvTTR~~~va~~~~------~-~~~~~l~~L~~~~a~~Lf~~ 67 (311)
+.+||+|+++... .+..+...+.. ...+..+|+||+.......+. . ...+.+++++.++..+++..
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~ 208 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTK 208 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHH
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHH
Confidence 6799999997643 34444433311 134556788888664432221 1 14899999999999999988
Q ss_pred hhcCCCCCCccHHHHHHHHHHHhC---CCchHHHH-HHHHhc-----c--c-cHHHHHHHHHHHhccCcccHHHHHhhhc
Q 021517 68 HAFKQNHPDVGYEELSCKVMKYAQ---GVPLALKV-LGCFLH-----K--R-EKEVWESATDKLQRILYPSILEVLKISY 135 (311)
Q Consensus 68 ~a~~~~~~~~~~~~~~~~i~~~c~---glPLai~~-~~~~L~-----~--~-~~~~w~~~~~~l~~~~~~~i~~~l~~sy 135 (311)
.+........-..+....+++.++ |.|..+.. +..... + . +.+.+..+++... ...+.-++
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~ 281 (386)
T 2qby_A 209 RAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE-------RDRVRDII 281 (386)
T ss_dssp HHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH-------HHHHHHHH
T ss_pred HHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-------hchHHHHH
Confidence 652111111112345666777777 99874433 322221 1 1 4555555554432 23455567
Q ss_pred ccCchhhhhhhhhhhcCCC-C---cCHHHHHHH----HHHcCCCc------ccchHHHhhcccceec
Q 021517 136 DSLDDKEKNIFLDVACFFQ-G---EDVDLVMKF----FNASGFYP------EIGMSVLVDKSLIAID 188 (311)
Q Consensus 136 ~~L~~~~k~cfl~ls~fp~-~---~~~~~l~~~----w~a~g~~~------~~~~~~L~~~sl~~~~ 188 (311)
..+|...+..+..++...+ + +....+.+. -..-|..+ ..+++.|...+++...
T Consensus 282 ~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 282 LTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 7888888777766664221 2 223333221 12223221 3568889999999764
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.17 E-value=0.0003 Score=62.61 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=27.8
Q ss_pred ccCCCCCC-CceeEEeeeC-CCCCCCCCCC--CCCCceEEEcCCCCccccccc-cccCcccccc
Q 021517 249 SYLQDPGF-AEVKYLHWYG-YPLKSLPSNL--SAKKLVLVEVPDSDIERLWHC-VKVCISYYTC 307 (311)
Q Consensus 249 ~lp~~~~~-~~Lr~L~l~~-~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l 307 (311)
.+|..+.. .+|+.|++.+ +.++.+|..+ ++.+|++|||++|+|+.+|.+ +.+|++|+.+
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l 231 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 231 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhc
Confidence 34444444 4555555543 3355555433 355555555555555555532 3344444433
No 135
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.15 E-value=0.00052 Score=57.44 Aligned_cols=57 Identities=11% Similarity=-0.046 Sum_probs=36.3
Q ss_pred CCC-Ccee-EEeeeCCCCCCCCCCC-CCCCceEEEcCCC-Ccccccc-ccccC-ccccccccC
Q 021517 254 PGF-AEVK-YLHWYGYPLKSLPSNL-SAKKLVLVEVPDS-DIERLWH-CVKVC-ISYYTCGIF 310 (311)
Q Consensus 254 ~~~-~~Lr-~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~-~i~~LP~-~i~~L-~~L~~l~i~ 310 (311)
+.. ++|+ +|+++++.+..+|..+ ...+|++|+|++| .++.+|. .+..+ .+|++|+++
T Consensus 151 ~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213 (239)
T ss_dssp TTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred ccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence 444 6677 7777777766776655 4466777777776 3776654 35566 666666654
No 136
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.11 E-value=0.0037 Score=55.98 Aligned_cols=201 Identities=12% Similarity=0.072 Sum_probs=112.0
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCC----CCcEEEEEeCchhHHHhcC-------CCceEEcCCCCHHHHHHHHHHh
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLT----PVSRIIITTRNKQVLRNWG-------VRKIYEMKALEYHHAIRLFSRH 68 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~----~gs~IlvTTR~~~va~~~~-------~~~~~~l~~L~~~~a~~Lf~~~ 68 (311)
+.+||||+++.. +....+...+.... .+..||+||+......... ....+.+++++.++..+++...
T Consensus 126 ~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~ 205 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDR 205 (389)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHH
T ss_pred eEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHH
Confidence 578999999764 44666655543211 3667888888765433321 1136999999999999999887
Q ss_pred hcCCCCCCccHHHHHHHHHHHh---------CCCchHHHHHHHH-hc-----cc---cHHHHHHHHHHHhccCcccHHHH
Q 021517 69 AFKQNHPDVGYEELSCKVMKYA---------QGVPLALKVLGCF-LH-----KR---EKEVWESATDKLQRILYPSILEV 130 (311)
Q Consensus 69 a~~~~~~~~~~~~~~~~i~~~c---------~glPLai~~~~~~-L~-----~~---~~~~w~~~~~~l~~~~~~~i~~~ 130 (311)
+........-..+....+++.+ +|.|-.+..+... .. +. +.+....+...... ..
T Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------~~ 278 (389)
T 1fnn_A 206 AKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF-------GI 278 (389)
T ss_dssp HHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC-------CC
T ss_pred HHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh-------hh
Confidence 5321111112235677888888 7887544433222 21 11 33333333333221 11
Q ss_pred HhhhcccCchhhhhhhhhhhcCC---C--CcCHHHHHHHHH----HcCCCc------ccchHHHhhcccceecCC-----
Q 021517 131 LKISYDSLDDKEKNIFLDVACFF---Q--GEDVDLVMKFFN----ASGFYP------EIGMSVLVDKSLIAIDSH----- 190 (311)
Q Consensus 131 l~~sy~~L~~~~k~cfl~ls~fp---~--~~~~~~l~~~w~----a~g~~~------~~~~~~L~~~sl~~~~~~----- 190 (311)
+.-.+..|+.+.+.++..++.+. . ......+...+. ..|... ..++++|.+.+++.....
T Consensus 279 ~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g 358 (389)
T 1fnn_A 279 SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEG 358 (389)
T ss_dssp CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCC
Confidence 22335667888887777777543 2 233344444332 223221 245899999999987532
Q ss_pred --CcE-------EeCHHHHHHHHHHHhh
Q 021517 191 --KKI-------TMHDLLQELGREIVRQ 209 (311)
Q Consensus 191 --~~~-------~mH~lv~~~~~~~~~~ 209 (311)
+.+ ..|+++..+...+..+
T Consensus 359 ~~g~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 359 VRGRTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp ----CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 222 2445666555555444
No 137
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.91 E-value=0.034 Score=49.44 Aligned_cols=177 Identities=14% Similarity=0.061 Sum_probs=99.6
Q ss_pred CeEEEEEeCCCCHHH-------HHHHHhcCCCC--CCCcEEEEEeCchhH--------HHhcCCCceEEcCCCCHHHHHH
Q 021517 1 MKVLIVFDDVTCFSQ-------IESLIGSLDWL--TPVSRIIITTRNKQV--------LRNWGVRKIYEMKALEYHHAIR 63 (311)
Q Consensus 1 kr~LlVLDdv~~~~~-------~~~l~~~~~~~--~~gs~IlvTTR~~~v--------a~~~~~~~~~~l~~L~~~~a~~ 63 (311)
++.+|||||++.... +..+....... ..+..+|.||+.... ...++ ...+.+++++.++..+
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~ 208 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRD 208 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHH
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHH
Confidence 367999999986532 33333322211 345577888876532 22221 1478999999999999
Q ss_pred HHHHhhc---CCCCCCccHHHHHHHHHHHhC---CCch-HHHHHHHHhc-----c--c-cHHHHHHHHHHHhccCcccHH
Q 021517 64 LFSRHAF---KQNHPDVGYEELSCKVMKYAQ---GVPL-ALKVLGCFLH-----K--R-EKEVWESATDKLQRILYPSIL 128 (311)
Q Consensus 64 Lf~~~a~---~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~~~~L~-----~--~-~~~~w~~~~~~l~~~~~~~i~ 128 (311)
++...+. .....++ +....+++.++ |.|- |+..+..+.. + . +.+.+..+++... .
T Consensus 209 il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~ 278 (387)
T 2v1u_A 209 ILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE-------R 278 (387)
T ss_dssp HHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------H
T ss_pred HHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------h
Confidence 9998752 2222233 34566777777 9993 3333332221 1 1 5666666665432 2
Q ss_pred HHHhhhcccCchhhhhhhhhhh-cCCCC--cCHHHHHHH----HHHcCCCc------ccchHHHhhcccceec
Q 021517 129 EVLKISYDSLDDKEKNIFLDVA-CFFQG--EDVDLVMKF----FNASGFYP------EIGMSVLVDKSLIAID 188 (311)
Q Consensus 129 ~~l~~sy~~L~~~~k~cfl~ls-~fp~~--~~~~~l~~~----w~a~g~~~------~~~~~~L~~~sl~~~~ 188 (311)
..+.-++..|+.+.+..+..++ ++... +....+.+. ....|..+ ..+++.|...|+++..
T Consensus 279 ~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 279 DRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred chHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 2355567888988887776666 33311 223333332 22233221 3458888899999874
No 138
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.90 E-value=0.0067 Score=52.78 Aligned_cols=101 Identities=8% Similarity=0.082 Sum_probs=65.2
Q ss_pred CeEEEEEeCCCC--HHHHHHHHhcCCCCCCCcEEEEEeCchhH-HHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCC
Q 021517 1 MKVLIVFDDVTC--FSQIESLIGSLDWLTPVSRIIITTRNKQV-LRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPD 76 (311)
Q Consensus 1 kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IlvTTR~~~v-a~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~ 76 (311)
++.++|+||++. .+.++.+...+.....++.+|+||+...- ...+ .....+++.+++.++..+++...+...+..
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~- 185 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVK- 185 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCC-
Confidence 367999999986 34455555444333467788888876432 1111 233589999999999999998876322111
Q ss_pred ccHHHHHHHHHHHhCCCchH-HHHHHHH
Q 021517 77 VGYEELSCKVMKYAQGVPLA-LKVLGCF 103 (311)
Q Consensus 77 ~~~~~~~~~i~~~c~glPLa-i~~~~~~ 103 (311)
-..+....+++.|+|.|.. +..+...
T Consensus 186 -~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 186 -YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp -BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1235678899999999954 4444433
No 139
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.88 E-value=0.00041 Score=59.43 Aligned_cols=34 Identities=29% Similarity=0.308 Sum_probs=15.7
Q ss_pred CceeEEeeeCCCCCCCCCCC-CCC--CceEEEcCCCCc
Q 021517 257 AEVKYLHWYGYPLKSLPSNL-SAK--KLVLVEVPDSDI 291 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i-~L~--~L~~L~L~~~~i 291 (311)
++|++|+|++|.+..+. .+ .|. +|++|+|++|.+
T Consensus 196 ~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 196 PNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp TTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTT
T ss_pred CCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcC
Confidence 45555555555554442 22 222 555555555544
No 140
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.85 E-value=0.0013 Score=62.70 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=25.1
Q ss_pred CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCCCcccccccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKV 300 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~~i~~LP~~i~~ 300 (311)
++|++|+|++|.+..+|. +. .+|++|+|++|+|+.+|. +.+
T Consensus 160 ~~L~~L~Ls~N~L~~lp~-l~-~~L~~L~Ls~N~L~~lp~-~~~ 200 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTFLPE-LP-ESLEALDVSTNLLESLPA-VPV 200 (571)
T ss_dssp TTCCEEECCSSCCSCCCC-CC-TTCCEEECCSSCCSSCCC-CC-
T ss_pred CCcCEEECCCCCCCCcch-hh-CCCCEEECcCCCCCchhh-HHH
Confidence 566666666666666666 54 566666666666666666 443
No 141
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.80 E-value=0.0013 Score=58.43 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=46.3
Q ss_pred ccccCCCC-CC-CceeEEeeeCCCCCCCCCCCCCCCceEEEcCCC-CccccccccccCcccccccc
Q 021517 247 KISYLQDP-GF-AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDS-DIERLWHCVKVCISYYTCGI 309 (311)
Q Consensus 247 ~~~lp~~~-~~-~~Lr~L~l~~~~i~~lP~~i~L~~L~~L~L~~~-~i~~LP~~i~~L~~L~~l~i 309 (311)
...+|.+. .. ++|++|++++|+++++|... +.+|+.|.+.++ +++.||. +.+|.+|+.+.+
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~-~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l 253 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYG-LENLKKLRARSTYNLKKLPT-LEKLVALMEASL 253 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCCCCSSS-CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEEC
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCccChhh-hccchHhhhccCCCcCcCCC-chhCcChhhCcC
Confidence 45677664 55 99999999999999999875 334444444444 7999995 899999998765
No 142
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.75 E-value=0.0044 Score=50.48 Aligned_cols=99 Identities=9% Similarity=0.027 Sum_probs=65.5
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCchhHH-Hh-cCCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQVL-RN-WGVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~va-~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+.+||+||++.. +..+.+...+.....++++|+||+..... .. ......+.+.+++.++..+++...+...+..
T Consensus 103 ~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~-- 180 (226)
T 2chg_A 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK-- 180 (226)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--
T ss_pred ceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC--
Confidence 578999999764 34555555444345677889988765321 11 1222488999999999999998876432211
Q ss_pred cHHHHHHHHHHHhCCCchHHHHHHH
Q 021517 78 GYEELSCKVMKYAQGVPLALKVLGC 102 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai~~~~~ 102 (311)
-..+....+++.++|.|..+..+..
T Consensus 181 ~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 181 ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1235677888999999986554443
No 143
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.75 E-value=0.002 Score=59.56 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=17.7
Q ss_pred ceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCcccccc
Q 021517 258 EVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWH 296 (311)
Q Consensus 258 ~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~ 296 (311)
.|++|++++|.+..+|. + ++.+|++|++++|.++.+|.
T Consensus 216 ~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 216 SLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp TCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS
T ss_pred cccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccc
Confidence 44444444444444442 3 44445555555544444444
No 144
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.69 E-value=0.00021 Score=62.94 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=43.6
Q ss_pred cCCCCCC-CceeEEeeeCCCCC-CCCCCC-CCCCceEEEcCCC-Ccc--ccccccccCccccccccC
Q 021517 250 YLQDPGF-AEVKYLHWYGYPLK-SLPSNL-SAKKLVLVEVPDS-DIE--RLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 250 lp~~~~~-~~Lr~L~l~~~~i~-~lP~~i-~L~~L~~L~L~~~-~i~--~LP~~i~~L~~L~~l~i~ 310 (311)
+|..+.. ++|++|++++|.+. ..|..+ ++.+|++|+|++| .++ .+|..+.++++|++|++.
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence 4455555 78888888888765 456666 6788888888887 676 377777778888877764
No 145
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.62 E-value=0.00032 Score=63.17 Aligned_cols=54 Identities=6% Similarity=-0.013 Sum_probs=33.2
Q ss_pred CceeEEeeeCCCCCC-----CCCCC-CCCCceEEEcCCCCcc-----ccccccccC---------ccccccccC
Q 021517 257 AEVKYLHWYGYPLKS-----LPSNL-SAKKLVLVEVPDSDIE-----RLWHCVKVC---------ISYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~-----lP~~i-~L~~L~~L~L~~~~i~-----~LP~~i~~L---------~~L~~l~i~ 310 (311)
++|++|+|++|.+.. +|..+ ++.+|++|+|++|.+. .++..+.++ ++|++|+++
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 667777777766654 56566 5667777777776654 344444444 666666654
No 146
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.60 E-value=0.00056 Score=61.58 Aligned_cols=61 Identities=18% Similarity=0.150 Sum_probs=48.9
Q ss_pred cCCCCCC-CceeEEeeeCCCC-----CCCCCCC-CCCCceEEEcCCCCccc-----ccccc--ccCccccccccC
Q 021517 250 YLQDPGF-AEVKYLHWYGYPL-----KSLPSNL-SAKKLVLVEVPDSDIER-----LWHCV--KVCISYYTCGIF 310 (311)
Q Consensus 250 lp~~~~~-~~Lr~L~l~~~~i-----~~lP~~i-~L~~L~~L~L~~~~i~~-----LP~~i--~~L~~L~~l~i~ 310 (311)
+|..+.. ++|++|+|++|.+ ..+|..+ ++.+|++|+|++|.|.. +|..+ +++++|++|+++
T Consensus 208 ~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~ 282 (386)
T 2ca6_A 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 282 (386)
T ss_dssp HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECC
T ss_pred HHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECc
Confidence 3435666 8999999999988 6788888 78999999999998876 47777 448889988875
No 147
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.30 E-value=0.0013 Score=57.65 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=50.8
Q ss_pred CCCCCC-CceeEEeeeCCCCCC--CCCCC-CCCCceEEEcCCCCcc-ccccccccCccccccccC
Q 021517 251 LQDPGF-AEVKYLHWYGYPLKS--LPSNL-SAKKLVLVEVPDSDIE-RLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 251 p~~~~~-~~Lr~L~l~~~~i~~--lP~~i-~L~~L~~L~L~~~~i~-~LP~~i~~L~~L~~l~i~ 310 (311)
+..+.. ++|++|++++|.+.. +|..+ ++.+|++|+|++|.+. ..|..++++++|++|++.
T Consensus 86 ~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 86 LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred chhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 333455 999999999998763 77777 7999999999999887 688899999999999875
No 148
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.74 E-value=0.011 Score=44.70 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=32.4
Q ss_pred ccCCCCCCCceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCC
Q 021517 249 SYLQDPGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDS 289 (311)
Q Consensus 249 ~lp~~~~~~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~ 289 (311)
.+|..+. ..|++|+|++|.|+.||..+ .|.+|++|+|.+|
T Consensus 24 ~vP~~lp-~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 24 SLPTAFP-VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TSCSCCC-TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred cCCCCCC-cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 5554432 67899999999999999887 5999999999886
No 149
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=95.62 E-value=0.0012 Score=59.05 Aligned_cols=53 Identities=9% Similarity=0.025 Sum_probs=34.0
Q ss_pred ceeEEeeeCCCCCCC-CCCC-CC-----CCceEEEcCCCCccccccc-----cccC-ccccccccC
Q 021517 258 EVKYLHWYGYPLKSL-PSNL-SA-----KKLVLVEVPDSDIERLWHC-----VKVC-ISYYTCGIF 310 (311)
Q Consensus 258 ~Lr~L~l~~~~i~~l-P~~i-~L-----~~L~~L~L~~~~i~~LP~~-----i~~L-~~L~~l~i~ 310 (311)
+|++|+|++|.+... |..+ .+ .+|++|+|++|.+...+.. +.++ .+|++|+++
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 117 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG 117 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECc
Confidence 677788877777655 3333 33 7778888877777755432 4444 677777664
No 150
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.94 E-value=0.059 Score=46.73 Aligned_cols=99 Identities=12% Similarity=0.102 Sum_probs=65.4
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCchhH-HHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQV-LRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~v-a~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+.++|+||++.. +.++.+...+.....++++|+||....- .... .....+.+.+++.++..+++...+...+..
T Consensus 111 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~-- 188 (327)
T 1iqp_A 111 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-- 188 (327)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE--
T ss_pred CeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC--
Confidence 568999999854 4456665555444567788888876532 1111 112378999999999999998876432211
Q ss_pred cHHHHHHHHHHHhCCCchHHHHHHH
Q 021517 78 GYEELSCKVMKYAQGVPLALKVLGC 102 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai~~~~~ 102 (311)
-..+....|++.++|.|..+..+..
T Consensus 189 ~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 189 LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 1235677888999999986654443
No 151
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.92 E-value=0.021 Score=43.00 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=41.1
Q ss_pred eEEeeeCCCCC--CCCCCCCCCCceEEEcCCCCcccccccc-ccCccccccccC
Q 021517 260 KYLHWYGYPLK--SLPSNLSAKKLVLVEVPDSDIERLWHCV-KVCISYYTCGIF 310 (311)
Q Consensus 260 r~L~l~~~~i~--~lP~~i~L~~L~~L~L~~~~i~~LP~~i-~~L~~L~~l~i~ 310 (311)
.+++.++.+++ ++|..+- .+|++|+|++|+|+.||.++ ..|.+|++|.|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp-~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 63 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP-VDTTELVLTGNNLTALPPGLLDALPALRTAHLG 63 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC-TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC
T ss_pred CEEEeCCCCCccccCCCCCC-cCCCEEECCCCcCCccChhhhhhccccCEEEec
Confidence 36788888888 9998772 24789999999999999875 678899988775
No 152
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=94.89 E-value=0.0042 Score=56.95 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=23.5
Q ss_pred ceeEEeeeCCCCC-----CCCCCC-CCCCceEEEcCCCCcc
Q 021517 258 EVKYLHWYGYPLK-----SLPSNL-SAKKLVLVEVPDSDIE 292 (311)
Q Consensus 258 ~Lr~L~l~~~~i~-----~lP~~i-~L~~L~~L~L~~~~i~ 292 (311)
+|++|+|++|.+. .+|..+ ++.+|++|+|++|.+.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 5777777777665 456666 5677777777777654
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.75 E-value=0.0055 Score=52.39 Aligned_cols=53 Identities=13% Similarity=0.072 Sum_probs=43.6
Q ss_pred CceeEEeeeCCCCCCCC---CCC-CCCCceEEEcCCCCccccccccccCc--cccccccC
Q 021517 257 AEVKYLHWYGYPLKSLP---SNL-SAKKLVLVEVPDSDIERLWHCVKVCI--SYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP---~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~--~L~~l~i~ 310 (311)
++|+.|+|++|.+..++ ..+ ++.+|++|+|++|.|+.+ .++.+|. +|+.|.+.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~ 228 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLD 228 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECT
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEcc
Confidence 68999999999987765 455 699999999999999988 4467776 78877664
No 154
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=94.68 E-value=0.0083 Score=53.39 Aligned_cols=54 Identities=15% Similarity=-0.130 Sum_probs=37.0
Q ss_pred CceeEEeeeCCCCCCCCC-----CC-CCCCceEEEcCCCC--------ccccccccccCccccccccC
Q 021517 257 AEVKYLHWYGYPLKSLPS-----NL-SAKKLVLVEVPDSD--------IERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~-----~i-~L~~L~~L~L~~~~--------i~~LP~~i~~L~~L~~l~i~ 310 (311)
++|++|+|++|.+...+. .+ .+.+|++|+|++|. +..++..+.++++|+.++++
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~ 292 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTT
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecC
Confidence 477888888877765543 23 46778888887776 55566667777777777664
No 155
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=94.64 E-value=0.0065 Score=55.68 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=28.7
Q ss_pred CceeEEeeeCCCCC-----CCCCCC-CCCCceEEEcCCCCccc---------cccccccCccccccc
Q 021517 257 AEVKYLHWYGYPLK-----SLPSNL-SAKKLVLVEVPDSDIER---------LWHCVKVCISYYTCG 308 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~-----~lP~~i-~L~~L~~L~L~~~~i~~---------LP~~i~~L~~L~~l~ 308 (311)
+.|++|++++|.+. .+|..+ ++.+|++|+|++|.+.. +|....+|++|+.++
T Consensus 370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~ 436 (461)
T 1z7x_W 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 436 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecc
Confidence 45666666666655 455555 46666666666665543 344444555555443
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.36 E-value=0.0063 Score=54.63 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=45.9
Q ss_pred cCCCCCC-CceeEEeeeCCCCC-----CCCCCC-CCCCceEEEcCCCCcc-----ccccccccCccccccccC
Q 021517 250 YLQDPGF-AEVKYLHWYGYPLK-----SLPSNL-SAKKLVLVEVPDSDIE-----RLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 250 lp~~~~~-~~Lr~L~l~~~~i~-----~lP~~i-~L~~L~~L~L~~~~i~-----~LP~~i~~L~~L~~l~i~ 310 (311)
++..+.. +.|++|+|++|.+. .|+..+ ...+|++|+|++|.|. .++..+.+.++|++|+++
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECT
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEecc
Confidence 3344445 78999999999875 345566 5778999999999886 466677778888888875
No 157
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.12 E-value=0.0058 Score=54.92 Aligned_cols=45 Identities=9% Similarity=-0.030 Sum_probs=33.7
Q ss_pred cCCCCCC-CceeEEeeeCCCCC-----CCCCCC-CCCCceEEEcCCCCcccc
Q 021517 250 YLQDPGF-AEVKYLHWYGYPLK-----SLPSNL-SAKKLVLVEVPDSDIERL 294 (311)
Q Consensus 250 lp~~~~~-~~Lr~L~l~~~~i~-----~lP~~i-~L~~L~~L~L~~~~i~~L 294 (311)
++..+.. +.|++|+|++|.+. .++..+ ....|++|+|++|.|..-
T Consensus 203 L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 3444555 78999999999886 344555 578899999999987653
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.97 E-value=0.0093 Score=47.81 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=31.3
Q ss_pred CceeEEeeeCCCCCC-----CCCCC-CCCCceEEEc--CCCCccc-----cccccccCccccccccC
Q 021517 257 AEVKYLHWYGYPLKS-----LPSNL-SAKKLVLVEV--PDSDIER-----LWHCVKVCISYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~-----lP~~i-~L~~L~~L~L--~~~~i~~-----LP~~i~~L~~L~~l~i~ 310 (311)
+.|++|+|++|.|.. |...+ ....|++|+| ++|.|.. |.+.+.+.++|++|++.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 566666666666543 44445 4556667777 5565543 44555555666666553
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=93.91 E-value=0.021 Score=45.44 Aligned_cols=31 Identities=3% Similarity=-0.076 Sum_probs=14.5
Q ss_pred CceEEEcCCC-Cccccc-cccccCccccccccC
Q 021517 280 KLVLVEVPDS-DIERLW-HCVKVCISYYTCGIF 310 (311)
Q Consensus 280 ~L~~L~L~~~-~i~~LP-~~i~~L~~L~~l~i~ 310 (311)
+|++|+|++| +|+.-- ..+.++++|++|+++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~ 147 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLS 147 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEE
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECC
Confidence 3555555555 343310 123455566655543
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.72 E-value=0.32 Score=42.87 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=63.8
Q ss_pred eEEEEEeCCCC--HHHHHHHHhcCCCCCCCcEEEEEeCchh-HHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTC--FSQIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IlvTTR~~~-va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+.++|+||++. .+.++.+...+.....+..+|++|.... +...+ .....+++.+++.++..+++...+-..+..
T Consensus 120 ~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~-- 197 (373)
T 1jr3_A 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-- 197 (373)
T ss_dssp SEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--
T ss_pred eEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--
Confidence 46899999975 3445666655543445667777776443 21111 223689999999999999998765221111
Q ss_pred cHHHHHHHHHHHhCCCchHHHHHH
Q 021517 78 GYEELSCKVMKYAQGVPLALKVLG 101 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai~~~~ 101 (311)
-..+....|++.++|.|..+..+.
T Consensus 198 ~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 198 HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 123556789999999998776554
No 161
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.57 E-value=0.0091 Score=56.57 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=32.5
Q ss_pred CceeEEeeeCCCCC-----CCCCCC-CCCCceEEEcCCCCccccccccccCcccccccc
Q 021517 257 AEVKYLHWYGYPLK-----SLPSNL-SAKKLVLVEVPDSDIERLWHCVKVCISYYTCGI 309 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~-----~lP~~i-~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l~i 309 (311)
+.|++|+++++.+. .+|..+ ++.+|++|+|++|.+..+|..+.++++|++|++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l 250 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCG 250 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEE
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcc
Confidence 56667777666654 333333 466677777777666666666666666665554
No 162
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.37 E-value=0.83 Score=39.09 Aligned_cols=98 Identities=9% Similarity=0.056 Sum_probs=65.6
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCchh-HHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~-va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|+++.. +..+.+...+.....++++|+||.... +.... .....+.+.+++.++..+++...+-..+..
T Consensus 103 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~-- 180 (319)
T 2chq_A 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK-- 180 (319)
T ss_dssp CEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC--
T ss_pred ceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC--
Confidence 568999999753 446667766665556778888876643 21111 223489999999999999998776432221
Q ss_pred cHHHHHHHHHHHhCCCchHHHHHH
Q 021517 78 GYEELSCKVMKYAQGVPLALKVLG 101 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai~~~~ 101 (311)
-..+....+++.++|.+..+....
T Consensus 181 i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 181 ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 123566788899999987655443
No 163
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=93.10 E-value=0.014 Score=52.19 Aligned_cols=54 Identities=9% Similarity=0.055 Sum_probs=42.9
Q ss_pred CceeEEeeeCCCCCC-CCCCC----CCCCceEEEcCCCCccc-----cccccccCccccccccC
Q 021517 257 AEVKYLHWYGYPLKS-LPSNL----SAKKLVLVEVPDSDIER-----LWHCVKVCISYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~-lP~~i----~L~~L~~L~L~~~~i~~-----LP~~i~~L~~L~~l~i~ 310 (311)
++||+|+|++|.+.. .+..+ .+.+|++|+|+.|.+.. ++.++.++++|+.|+++
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence 899999999998642 22222 37799999999998776 78888889999988875
No 164
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=92.74 E-value=0.021 Score=45.65 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=16.1
Q ss_pred CceeEEee--eCCCCCC-----CCCCC-CCCCceEEEcCCCCc
Q 021517 257 AEVKYLHW--YGYPLKS-----LPSNL-SAKKLVLVEVPDSDI 291 (311)
Q Consensus 257 ~~Lr~L~l--~~~~i~~-----lP~~i-~L~~L~~L~L~~~~i 291 (311)
+.|++|+| ++|.+.. +.+.+ ....|++|+|++|.|
T Consensus 121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 121 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 45555555 4444432 22333 234555555555544
No 165
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=92.37 E-value=0.084 Score=46.08 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=44.5
Q ss_pred ccccCCCCCC--CceeEEeeeCCCCCCCCCCC--CCCCce-EEEcCCCCccccc-cccccCcccccccc
Q 021517 247 KISYLQDPGF--AEVKYLHWYGYPLKSLPSNL--SAKKLV-LVEVPDSDIERLW-HCVKVCISYYTCGI 309 (311)
Q Consensus 247 ~~~lp~~~~~--~~Lr~L~l~~~~i~~lP~~i--~L~~L~-~L~L~~~~i~~LP-~~i~~L~~L~~l~i 309 (311)
...+|..... .+|+.|+|.++ ++.+|+.. ++.+|+ .++|+. +++.++ .....+.+|+++.+
T Consensus 238 i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 238 ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 4456665444 78888888876 88888765 688888 888877 787776 45677777777765
No 166
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=91.67 E-value=0.026 Score=53.39 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=37.2
Q ss_pred CceeEEeeeCCCCCC-----CCCCC-CCCCceEEEcCCCC--c--cccccccccCccccccccC
Q 021517 257 AEVKYLHWYGYPLKS-----LPSNL-SAKKLVLVEVPDSD--I--ERLWHCVKVCISYYTCGIF 310 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~-----lP~~i-~L~~L~~L~L~~~~--i--~~LP~~i~~L~~L~~l~i~ 310 (311)
++|++|++++|.+.. ++... .+.+|++|+|++|. + ..++.-+.++++|++|++.
T Consensus 156 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp TTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred CCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 789999999887433 44444 57789999998886 2 3344444566888888764
No 167
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=91.57 E-value=0.055 Score=51.09 Aligned_cols=58 Identities=10% Similarity=0.044 Sum_probs=38.3
Q ss_pred CCCCC-CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccc--cccccccCcccccccc
Q 021517 252 QDPGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIER--LWHCVKVCISYYTCGI 309 (311)
Q Consensus 252 ~~~~~-~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~--LP~~i~~L~~L~~l~i 309 (311)
..+.. ++|+.|+++++....+|..+ .+.+|++|+|++|.+.. ++..+.++++|++|++
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEec
Confidence 34455 77777777777667777777 57788888888876432 3333566666666654
No 168
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=91.41 E-value=0.23 Score=43.19 Aligned_cols=59 Identities=10% Similarity=-0.048 Sum_probs=48.2
Q ss_pred cccCCCCCC--Ccee-EEeeeCCCCCCCCCCC--CCCCceEEEcCCCCcccccc-ccccCcccccc
Q 021517 248 ISYLQDPGF--AEVK-YLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWH-CVKVCISYYTC 307 (311)
Q Consensus 248 ~~lp~~~~~--~~Lr-~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~l 307 (311)
..++..... ..|+ .|++.+ +++.+++.. ++.+|+.|+|++++++.++. ...++.+|+++
T Consensus 262 ~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 262 KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 445555444 8899 999998 899998654 79999999999999999997 56788888876
No 169
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.35 E-value=1.3 Score=38.73 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=61.9
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCchh-HHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~-va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|+++.. +..+.+...+.....++.+|++|.+.+ +...+ .-...+.+.+++.++..+.+.... ..
T Consensus 109 ~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~-- 182 (334)
T 1a5t_A 109 AKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TM-- 182 (334)
T ss_dssp CEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CC--
T ss_pred cEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CC--
Confidence 457899999854 445666666654445677777766543 33322 334589999999999999888765 11
Q ss_pred cHHHHHHHHHHHhCCCchHHHHH
Q 021517 78 GYEELSCKVMKYAQGVPLALKVL 100 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai~~~ 100 (311)
..+.+..+++.++|.|..+..+
T Consensus 183 -~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 183 -SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp -CHHHHHHHHHHTTTCHHHHHHT
T ss_pred -CHHHHHHHHHHcCCCHHHHHHH
Confidence 1245577899999999765443
No 170
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.29 E-value=1.5 Score=36.74 Aligned_cols=114 Identities=14% Similarity=0.106 Sum_probs=62.1
Q ss_pred eEEEEEeCCCCH------------HHHHHHHhcCCC---CCCCcEEEEEeCchhHHHhc----CCCceEEcCCCCH-HHH
Q 021517 2 KVLIVFDDVTCF------------SQIESLIGSLDW---LTPVSRIIITTRNKQVLRNW----GVRKIYEMKALEY-HHA 61 (311)
Q Consensus 2 r~LlVLDdv~~~------------~~~~~l~~~~~~---~~~gs~IlvTTR~~~va~~~----~~~~~~~l~~L~~-~~a 61 (311)
..+|++||++.. ...+.+...+.. .+.+..||.||......... .....+.+++++. ++-
T Consensus 125 ~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i 204 (272)
T 1d2n_A 125 LSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQL 204 (272)
T ss_dssp EEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHH
T ss_pred CcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHH
Confidence 468999998643 223444433322 22344577788777554431 2245789999988 555
Q ss_pred HHHHHHhhcCCCCCCccHHHHHHHHHHHhCC------CchHHHHHHHHhccccHHHHHHHHHHHhcc
Q 021517 62 IRLFSRHAFKQNHPDVGYEELSCKVMKYAQG------VPLALKVLGCFLHKREKEVWESATDKLQRI 122 (311)
Q Consensus 62 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~g------lPLai~~~~~~L~~~~~~~w~~~~~~l~~~ 122 (311)
..++.... .. ..+....+++.+.| +.-++..+-..........+..+++.+.+.
T Consensus 205 ~~i~~~~~----~~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 205 LEALELLG----NF---KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHHHHHT----CS---CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHT
T ss_pred HHHHHhcC----CC---CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHc
Confidence 55555421 11 13456778888877 334333333332222445566666555443
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.18 E-value=0.23 Score=40.65 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=56.3
Q ss_pred EEEEEeCCCCHH--H--HHHHHhcCCCC-CCCc-EEEEEeCch---------hHHHhcCCCceEEcCCCCHHHHHHHHHH
Q 021517 3 VLIVFDDVTCFS--Q--IESLIGSLDWL-TPVS-RIIITTRNK---------QVLRNWGVRKIYEMKALEYHHAIRLFSR 67 (311)
Q Consensus 3 ~LlVLDdv~~~~--~--~~~l~~~~~~~-~~gs-~IlvTTR~~---------~va~~~~~~~~~~l~~L~~~~a~~Lf~~ 67 (311)
-+||+||++... . .+.+...+... ..+. ++|+||+.. .+...+.....+.+.+++.++..+++..
T Consensus 106 ~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~ 185 (242)
T 3bos_A 106 DLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQR 185 (242)
T ss_dssp SEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHH
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHH
Confidence 478999997532 1 22222221100 1222 477777632 2222222236899999999999999988
Q ss_pred hhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 021517 68 HAFKQNHPDVGYEELSCKVMKYAQGVPLALKVLG 101 (311)
Q Consensus 68 ~a~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 101 (311)
.+..... .-..+....+++.++|.+-.+..+.
T Consensus 186 ~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 186 RAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 7632221 1123566788888998876655443
No 172
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=89.27 E-value=0.079 Score=50.00 Aligned_cols=59 Identities=10% Similarity=0.078 Sum_probs=46.2
Q ss_pred cCCCCCC-CceeEEeeeCCCCCCCC-----CCC-CCCCceEEEcCCC-CccccccccccCcccccccc
Q 021517 250 YLQDPGF-AEVKYLHWYGYPLKSLP-----SNL-SAKKLVLVEVPDS-DIERLWHCVKVCISYYTCGI 309 (311)
Q Consensus 250 lp~~~~~-~~Lr~L~l~~~~i~~lP-----~~i-~L~~L~~L~L~~~-~i~~LP~~i~~L~~L~~l~i 309 (311)
++..... ++|++|++++|. ..++ ..+ ++.+|++|+|++| .+..+|..+.++++|++|++
T Consensus 176 l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred HHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 4444445 899999999997 3333 222 4799999999999 88889999999999999875
No 173
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.04 E-value=1.1 Score=38.43 Aligned_cols=100 Identities=14% Similarity=0.053 Sum_probs=60.9
Q ss_pred EEEEEeCCCCHH--HHHHHHhcCCCC------------------CCCcEEEEEeCchh-HHHhc--CCCceEEcCCCCHH
Q 021517 3 VLIVFDDVTCFS--QIESLIGSLDWL------------------TPVSRIIITTRNKQ-VLRNW--GVRKIYEMKALEYH 59 (311)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~------------------~~gs~IlvTTR~~~-va~~~--~~~~~~~l~~L~~~ 59 (311)
.+|++|++.... ..+.+...+... .++..+|.||.... +.... .....+.+.+++.+
T Consensus 92 ~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~ 171 (324)
T 1hqc_A 92 DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPE 171 (324)
T ss_dssp CEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHH
T ss_pred CEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHH
Confidence 478999998643 333333222111 02345666665432 11111 12358999999999
Q ss_pred HHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHh
Q 021517 60 HAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKVLGCFL 104 (311)
Q Consensus 60 ~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 104 (311)
+...++...+...... -..+....+++.|+|.|-.+..+...+
T Consensus 172 e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 172 ELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp HHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999998877432221 123567889999999998777665544
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.39 E-value=2.5 Score=39.27 Aligned_cols=96 Identities=11% Similarity=0.163 Sum_probs=55.7
Q ss_pred eEEEEEeCCCCHH-----HHHHHHhcCCCCCCCcEEEEEeCchh---HHHhcCCCceEEcCCCCHHHHHHHHHHhhcCCC
Q 021517 2 KVLIVFDDVTCFS-----QIESLIGSLDWLTPVSRIIITTRNKQ---VLRNWGVRKIYEMKALEYHHAIRLFSRHAFKQN 73 (311)
Q Consensus 2 r~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IlvTTR~~~---va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 73 (311)
+.+||+|+++... .+..+...+.. .+..||+++.... +.........+.+.+++.++..+.+...+....
T Consensus 149 ~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~ 226 (516)
T 1sxj_A 149 HFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREK 226 (516)
T ss_dssp SEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 5789999996431 13333333221 2334555554432 222223345789999999999999887764322
Q ss_pred -CCCccHHHHHHHHHHHhCC-CchHHHHHHH
Q 021517 74 -HPDVGYEELSCKVMKYAQG-VPLALKVLGC 102 (311)
Q Consensus 74 -~~~~~~~~~~~~i~~~c~g-lPLai~~~~~ 102 (311)
..++ +....|++.++| ++-|+..+..
T Consensus 227 ~~i~~---~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 227 FKLDP---NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp CCCCT---THHHHHHHHTTTCHHHHHHHHTH
T ss_pred CCCCH---HHHHHHHHHcCCcHHHHHHHHHH
Confidence 2222 346678888998 4555555543
No 175
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.33 E-value=1.8 Score=37.66 Aligned_cols=97 Identities=6% Similarity=0.089 Sum_probs=59.3
Q ss_pred EEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCch-hHHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCC-CCc
Q 021517 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNH-PDV 77 (311)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~-~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~-~~~ 77 (311)
-++|+|++... +..+.+...+.....++.+|++|... .+...+ .-...+++.+++.++..+.+...+-..+. .+.
T Consensus 136 ~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (354)
T 1sxj_E 136 KCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET 215 (354)
T ss_dssp EEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC
T ss_pred eEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc
Confidence 38999999864 22344443332223466777777653 222222 22368999999999999999877632211 110
Q ss_pred cHHHHHHHHHHHhCCCchHHHHHH
Q 021517 78 GYEELSCKVMKYAQGVPLALKVLG 101 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLai~~~~ 101 (311)
.+....|++.++|.+-.+..+.
T Consensus 216 --~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 216 --KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp --SHHHHHHHHHHTTCHHHHHHHH
T ss_pred --HHHHHHHHHHcCCCHHHHHHHH
Confidence 2556788899999886554443
No 176
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=85.84 E-value=0.31 Score=43.40 Aligned_cols=55 Identities=13% Similarity=0.016 Sum_probs=31.8
Q ss_pred CCceeEEeeeCCCCCCC-CCCC---CCCCceEEEcCCC--------Ccccccccc--ccCccccccccC
Q 021517 256 FAEVKYLHWYGYPLKSL-PSNL---SAKKLVLVEVPDS--------DIERLWHCV--KVCISYYTCGIF 310 (311)
Q Consensus 256 ~~~Lr~L~l~~~~i~~l-P~~i---~L~~L~~L~L~~~--------~i~~LP~~i--~~L~~L~~l~i~ 310 (311)
.++|+.|+|..|.+..- ...+ ++.+|++|+|+.+ .+..+...+ +.+++|++|+++
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~ 260 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV 260 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEE
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCC
Confidence 47888888887764311 0112 4778888887531 133333323 356788888764
No 177
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=85.16 E-value=2 Score=39.19 Aligned_cols=93 Identities=10% Similarity=0.114 Sum_probs=56.9
Q ss_pred EEEEEeCCCCHH----HHHHHHhcCCC-CCCCcEEEEEeCch---------hHHHhcCCCceEEcCCCCHHHHHHHHHHh
Q 021517 3 VLIVFDDVTCFS----QIESLIGSLDW-LTPVSRIIITTRNK---------QVLRNWGVRKIYEMKALEYHHAIRLFSRH 68 (311)
Q Consensus 3 ~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IlvTTR~~---------~va~~~~~~~~~~l~~L~~~~a~~Lf~~~ 68 (311)
-+|++||++... .-+.+...+.. ...|..||+||... .+...+.....+.+++++.++-.+++.+.
T Consensus 196 ~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~ 275 (440)
T 2z4s_A 196 DILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKM 275 (440)
T ss_dssp SEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHH
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 479999996432 22233322210 13467888888762 23333433457899999999999999887
Q ss_pred hcCCC-CCCccHHHHHHHHHHHhCCCchHHH
Q 021517 69 AFKQN-HPDVGYEELSCKVMKYAQGVPLALK 98 (311)
Q Consensus 69 a~~~~-~~~~~~~~~~~~i~~~c~glPLai~ 98 (311)
+-..+ ..++ +....|++.++|.+-.+.
T Consensus 276 ~~~~~~~i~~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 276 LEIEHGELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHTCCCCT---THHHHHHHHCCSCHHHHH
T ss_pred HHHcCCCCCH---HHHHHHHHhcCCCHHHHH
Confidence 73211 1222 345677888888875444
No 178
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.24 E-value=4.9 Score=34.77 Aligned_cols=97 Identities=13% Similarity=0.157 Sum_probs=60.1
Q ss_pred EEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCchh-HHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCcc
Q 021517 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (311)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~-va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 78 (311)
-+|++|++... ...+.+...+.......++|++|.... +.... .....+.+.+++.++....+...+...+.. -
T Consensus 135 ~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i 212 (353)
T 1sxj_D 135 KIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVK--C 212 (353)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCC--C
T ss_pred eEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCC--C
Confidence 48999998643 334445444433344567777765432 21111 112378999999999999998876332211 1
Q ss_pred HHHHHHHHHHHhCCCchHHHHHH
Q 021517 79 YEELSCKVMKYAQGVPLALKVLG 101 (311)
Q Consensus 79 ~~~~~~~i~~~c~glPLai~~~~ 101 (311)
..+....|++.++|.|-.+..+.
T Consensus 213 ~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 213 DDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp CHHHHHHHHHHTSSCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 23567889999999987655443
No 179
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=81.54 E-value=5.5 Score=33.37 Aligned_cols=92 Identities=22% Similarity=0.290 Sum_probs=52.8
Q ss_pred EEEEEeCCCCH----------------HHHHHHHhcCC--CCCCCcEEEEEeCchhHHH-----hcCCCceEEcCCCCHH
Q 021517 3 VLIVFDDVTCF----------------SQIESLIGSLD--WLTPVSRIIITTRNKQVLR-----NWGVRKIYEMKALEYH 59 (311)
Q Consensus 3 ~LlVLDdv~~~----------------~~~~~l~~~~~--~~~~gs~IlvTTR~~~va~-----~~~~~~~~~l~~L~~~ 59 (311)
.+|++||++.. ..+..+...+. ....+..||.||...+... .......+.++.++.+
T Consensus 112 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~ 191 (285)
T 3h4m_A 112 SIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEK 191 (285)
T ss_dssp EEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHH
T ss_pred eEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHH
Confidence 68999999653 11333332221 1234567788887543221 1122357899999999
Q ss_pred HHHHHHHHhhcCCCCC-CccHHHHHHHHHHHhCCC-chHHH
Q 021517 60 HAIRLFSRHAFKQNHP-DVGYEELSCKVMKYAQGV-PLALK 98 (311)
Q Consensus 60 ~a~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~c~gl-PLai~ 98 (311)
+-.+++...+...... ... ...+++.+.|. |-.|.
T Consensus 192 ~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 192 GRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp HHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHH
Confidence 9999998887433221 222 34566666663 43443
No 180
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.03 E-value=16 Score=29.75 Aligned_cols=93 Identities=11% Similarity=0.161 Sum_probs=52.0
Q ss_pred eEEEEEeCCCCH-----------------HHHHHHHhcCCC--CCCCcEEEEEeCchhHHH-hc----CCCceEEcCCCC
Q 021517 2 KVLIVFDDVTCF-----------------SQIESLIGSLDW--LTPVSRIIITTRNKQVLR-NW----GVRKIYEMKALE 57 (311)
Q Consensus 2 r~LlVLDdv~~~-----------------~~~~~l~~~~~~--~~~gs~IlvTTR~~~va~-~~----~~~~~~~l~~L~ 57 (311)
..+|++|+++.. ..+..+...+.. ...+..||.||....... .. .....+.++..+
T Consensus 99 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~ 178 (262)
T 2qz4_A 99 PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT 178 (262)
T ss_dssp SEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCC
T ss_pred CeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcC
Confidence 468999999864 112333332221 123556777776544211 11 233578899999
Q ss_pred HHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCch
Q 021517 58 YHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPL 95 (311)
Q Consensus 58 ~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPL 95 (311)
.++-.+++...+..... ..........+++.+.|.+-
T Consensus 179 ~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 179 LQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp HHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCH
T ss_pred HHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCH
Confidence 99999999887633221 22222234678888888754
No 181
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=79.57 E-value=8.9 Score=33.20 Aligned_cols=97 Identities=12% Similarity=-0.029 Sum_probs=63.8
Q ss_pred eEEEEEeCCCC---HHHHHHHHhcCCCCCCCcEEEEEeCc-------hhHHHhc-CCCceEEcCCCCHHHHHHHHHHhhc
Q 021517 2 KVLIVFDDVTC---FSQIESLIGSLDWLTPVSRIIITTRN-------KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAF 70 (311)
Q Consensus 2 r~LlVLDdv~~---~~~~~~l~~~~~~~~~gs~IlvTTR~-------~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~ 70 (311)
+=++|+|++.. .+.++.+...+.+..+++.+|++|.. ..+...+ .....++..+++.++....+...+-
T Consensus 77 ~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 77 RQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAK 156 (343)
T ss_dssp CEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHH
Confidence 44788999865 35567777666544567777776643 2444443 3346889999999999888877663
Q ss_pred CCCCCCccHHHHHHHHHHHhCCCchHHHHH
Q 021517 71 KQNHPDVGYEELSCKVMKYAQGVPLALKVL 100 (311)
Q Consensus 71 ~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 100 (311)
..+. .-..+.+..+++.++|.+.++...
T Consensus 157 ~~g~--~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 157 QLNL--ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HTTC--EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HcCC--CCCHHHHHHHHHHhchHHHHHHHH
Confidence 2221 112356778889999988776653
No 182
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=79.55 E-value=25 Score=30.09 Aligned_cols=97 Identities=13% Similarity=0.140 Sum_probs=57.0
Q ss_pred EEEEEeCCCCH--HHHHHHHhcCCCCC------------------CCcEEEEEeCchhH-HHhc--CCCceEEcCCCCHH
Q 021517 3 VLIVFDDVTCF--SQIESLIGSLDWLT------------------PVSRIIITTRNKQV-LRNW--GVRKIYEMKALEYH 59 (311)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~------------------~gs~IlvTTR~~~v-a~~~--~~~~~~~l~~L~~~ 59 (311)
.+|+||++... +..+.+...+.... ++..+|.||..... .... .....+.+.+++.+
T Consensus 108 ~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~ 187 (338)
T 3pfi_A 108 DILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDS 187 (338)
T ss_dssp CEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHH
T ss_pred CEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHH
Confidence 47899999854 33444443332111 12456655554321 1111 23368999999999
Q ss_pred HHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 021517 60 HAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKVLG 101 (311)
Q Consensus 60 ~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 101 (311)
+...++...+-... ..-..+....+++.+.|.|-.+..+.
T Consensus 188 e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 188 ELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp HHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999987763322 11223567778888999985554433
No 183
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=77.78 E-value=2.5 Score=37.90 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=36.1
Q ss_pred CceeEEeeeCCCCCCCCCCC-CCCCceEEEcCCCCccccccc-cccCcccccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGI 309 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i-~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i 309 (311)
.+|+.++|.++++..+|... ...+|+.+.|.. +++.++.. ..++.+|+.+.+
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEEC
T ss_pred ccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEec
Confidence 77788888777777777766 557777777764 47777653 456667776654
No 184
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=74.48 E-value=3.2 Score=37.20 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=25.8
Q ss_pred CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccccccCcccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHCVKVCISYYTC 307 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l 307 (311)
..|+.+.+.. .++.++... ++.+|+.++|+.++++.+|.+.-...+|+.+
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l 208 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEV 208 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEE
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEE
Confidence 4455555553 455555433 4555666666555555555544434444433
No 185
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=73.99 E-value=2.2 Score=33.65 Aligned_cols=64 Identities=9% Similarity=-0.043 Sum_probs=43.0
Q ss_pred ccccCCCCCC-CceeEEeeeCCCCCCC-CCCC-CCCCceEEEcCCC-Cccccc-cccccC----ccccccccC
Q 021517 247 KISYLQDPGF-AEVKYLHWYGYPLKSL-PSNL-SAKKLVLVEVPDS-DIERLW-HCVKVC----ISYYTCGIF 310 (311)
Q Consensus 247 ~~~lp~~~~~-~~Lr~L~l~~~~i~~l-P~~i-~L~~L~~L~L~~~-~i~~LP-~~i~~L----~~L~~l~i~ 310 (311)
...+|..... ..|+.||+++|.|+.- -..+ ++.+|++|+|++| .|+.-- ..|.++ .+|++|+|+
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls 122 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII 122 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEE
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcC
Confidence 3477876655 8999999999986531 1234 6999999999999 465421 123333 257777664
No 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=73.64 E-value=35 Score=29.22 Aligned_cols=98 Identities=12% Similarity=0.067 Sum_probs=55.5
Q ss_pred eEEEEEeCCCCH-------------HHHHHHHhcCC---CCCCCcEEEEEeCchhHH-Hh--cCCCceEEcCCCCHHHHH
Q 021517 2 KVLIVFDDVTCF-------------SQIESLIGSLD---WLTPVSRIIITTRNKQVL-RN--WGVRKIYEMKALEYHHAI 62 (311)
Q Consensus 2 r~LlVLDdv~~~-------------~~~~~l~~~~~---~~~~gs~IlvTTR~~~va-~~--~~~~~~~~l~~L~~~~a~ 62 (311)
..+|++|+++.. .....+...+. ....+..||.||...... .. -.....+.++..+.++-.
T Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~ 185 (322)
T 1xwi_A 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARA 185 (322)
T ss_dssp SEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHH
T ss_pred CcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHH
Confidence 468999999754 11223332221 123445566566543211 11 134467899999999999
Q ss_pred HHHHHhhcCCCCCCccHHHHHHHHHHHhCCCc-hHHHHHH
Q 021517 63 RLFSRHAFKQNHPDVGYEELSCKVMKYAQGVP-LALKVLG 101 (311)
Q Consensus 63 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 101 (311)
+++........... .......|++.+.|.. -.|..+.
T Consensus 186 ~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 186 AMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp HHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99988763322111 1345677888888874 3444443
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=73.55 E-value=27 Score=29.88 Aligned_cols=97 Identities=10% Similarity=0.012 Sum_probs=55.7
Q ss_pred eEEEEEeCCCCHH-------------HHHHHHhcC---CCCCCCcEEEEEeCchhHHH-h--cCCCceEEcCCCCHHHHH
Q 021517 2 KVLIVFDDVTCFS-------------QIESLIGSL---DWLTPVSRIIITTRNKQVLR-N--WGVRKIYEMKALEYHHAI 62 (311)
Q Consensus 2 r~LlVLDdv~~~~-------------~~~~l~~~~---~~~~~gs~IlvTTR~~~va~-~--~~~~~~~~l~~L~~~~a~ 62 (311)
..+|++|+++... ....+...+ .....+..||.||....... . -.....+.++..+.++-.
T Consensus 111 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~ 190 (322)
T 3eie_A 111 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 190 (322)
T ss_dssp SEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHH
T ss_pred CeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHH
Confidence 3689999997431 123333222 22234556666776543211 0 023457889999999999
Q ss_pred HHHHHhhcCCCCCCccHHHHHHHHHHHhCCC-chHHHHH
Q 021517 63 RLFSRHAFKQNHPDVGYEELSCKVMKYAQGV-PLALKVL 100 (311)
Q Consensus 63 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~ 100 (311)
+++...+....... .......|++.+.|. +-.|..+
T Consensus 191 ~il~~~~~~~~~~~--~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 191 TMFEINVGDTPCVL--TKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp HHHHHHHTTCCCCC--CHHHHHHHHHTTTTCCHHHHHHH
T ss_pred HHHHHHhccCCCCC--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 99998874322211 124567788888874 4344433
No 188
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=73.48 E-value=45 Score=28.96 Aligned_cols=96 Identities=10% Similarity=0.030 Sum_probs=54.9
Q ss_pred eEEEEEeCCCCHH-------------HHHHHHhcC---CCCCCCcEEEEEeCchh-----HHHhcCCCceEEcCCCCHHH
Q 021517 2 KVLIVFDDVTCFS-------------QIESLIGSL---DWLTPVSRIIITTRNKQ-----VLRNWGVRKIYEMKALEYHH 60 (311)
Q Consensus 2 r~LlVLDdv~~~~-------------~~~~l~~~~---~~~~~gs~IlvTTR~~~-----va~~~~~~~~~~l~~L~~~~ 60 (311)
..+|++|+++... ....+...+ .....+..||.||.... +.. .....+.+...+.++
T Consensus 144 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 221 (355)
T 2qp9_X 144 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAA 221 (355)
T ss_dssp SEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHH
T ss_pred CeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHH
Confidence 4689999998531 122332222 21234556666776442 222 345678899999999
Q ss_pred HHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCC-chHHHHHH
Q 021517 61 AIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGV-PLALKVLG 101 (311)
Q Consensus 61 a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~ 101 (311)
-.+++...+.......+ ......|++.+.|. +-.|..+.
T Consensus 222 r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 222 RTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999887733221111 24567788888884 43444433
No 189
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=72.73 E-value=5.8 Score=33.65 Aligned_cols=66 Identities=9% Similarity=0.059 Sum_probs=45.4
Q ss_pred EEEEEeCCC-----------CHHHHHHHHhcCCCCCCCcEEEEEeCchhH----------HHhcCCCceEEcCCCCHHHH
Q 021517 3 VLIVFDDVT-----------CFSQIESLIGSLDWLTPVSRIIITTRNKQV----------LRNWGVRKIYEMKALEYHHA 61 (311)
Q Consensus 3 ~LlVLDdv~-----------~~~~~~~l~~~~~~~~~gs~IlvTTR~~~v----------a~~~~~~~~~~l~~L~~~~a 61 (311)
-+|++|+++ ..+....+...+.....+..||.||..... ... ....+.+++++.++-
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~ 209 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEEL 209 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHH
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHH
Confidence 378999998 444456666555444556778888865432 222 226889999999999
Q ss_pred HHHHHHhhc
Q 021517 62 IRLFSRHAF 70 (311)
Q Consensus 62 ~~Lf~~~a~ 70 (311)
.+++...+-
T Consensus 210 ~~il~~~l~ 218 (309)
T 3syl_A 210 FEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987763
No 190
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=70.98 E-value=9.9 Score=32.50 Aligned_cols=93 Identities=12% Similarity=0.070 Sum_probs=52.4
Q ss_pred eEEEEEeCCCCHH---HHHHHHhcCCCCCCCcEEEEEeCchh-----HHHhcCCCceEEcCCCCHHHHHHHH-------H
Q 021517 2 KVLIVFDDVTCFS---QIESLIGSLDWLTPVSRIIITTRNKQ-----VLRNWGVRKIYEMKALEYHHAIRLF-------S 66 (311)
Q Consensus 2 r~LlVLDdv~~~~---~~~~l~~~~~~~~~gs~IlvTTR~~~-----va~~~~~~~~~~l~~L~~~~a~~Lf-------~ 66 (311)
+-+||+||++... ..+.+...+.....+.++|+||.... +... ...+.+++++.++-.+++ .
T Consensus 106 ~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~~~l~ 182 (324)
T 3u61_B 106 QKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR---CRVITFGQPTDEDKIEMMKQMIRRLT 182 (324)
T ss_dssp EEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH---SEEEECCCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh---CcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 5689999999754 34444444332234567888887643 1222 147899999988843332 2
Q ss_pred HhhcCCCCCCccHHHHHHHHHHHhCCCchHHH
Q 021517 67 RHAFKQNHPDVGYEELSCKVMKYAQGVPLALK 98 (311)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~i~~~c~glPLai~ 98 (311)
..+...+..-++ .+....+++.++|.+-.+.
T Consensus 183 ~~~~~~~~~~~~-~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 183 EICKHEGIAIAD-MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HHHHHHTCCBSC-HHHHHHHHHHTCSCTTHHH
T ss_pred HHHHHcCCCCCc-HHHHHHHHHhCCCCHHHHH
Confidence 222111111111 2556778888888765433
No 191
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=69.14 E-value=31 Score=30.04 Aligned_cols=98 Identities=12% Similarity=0.034 Sum_probs=54.8
Q ss_pred eEEEEEeCCCCH-------------HHHHHHHhcCCC----CCCCcEEEEEeCchh-HHHhc--CCCceEEcCCCCHHHH
Q 021517 2 KVLIVFDDVTCF-------------SQIESLIGSLDW----LTPVSRIIITTRNKQ-VLRNW--GVRKIYEMKALEYHHA 61 (311)
Q Consensus 2 r~LlVLDdv~~~-------------~~~~~l~~~~~~----~~~gs~IlvTTR~~~-va~~~--~~~~~~~l~~L~~~~a 61 (311)
..+|+||+++.. .....+...+.. ...+..||.||.... +.... .....+.+...+.++.
T Consensus 177 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r 256 (357)
T 3d8b_A 177 PAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASAR 256 (357)
T ss_dssp SEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHH
T ss_pred CeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHH
Confidence 468999999532 113333333221 123445665665432 11111 3345788999999999
Q ss_pred HHHHHHhhcCCCCCCccHHHHHHHHHHHhCCC-chHHHHHH
Q 021517 62 IRLFSRHAFKQNHPDVGYEELSCKVMKYAQGV-PLALKVLG 101 (311)
Q Consensus 62 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~ 101 (311)
.+++...+-..... -..+....|++.+.|. +-+|..+.
T Consensus 257 ~~il~~~~~~~~~~--l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 257 KQIVINLMSKEQCC--LSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp HHHHHHHHHTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHhhcCCC--ccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99988776322211 1134567788888884 44555443
No 192
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=68.40 E-value=52 Score=29.62 Aligned_cols=97 Identities=12% Similarity=0.074 Sum_probs=56.5
Q ss_pred eEEEEEeCCCCH-------------HHHHHHHhcCCC---CCCCcEEEEEeCchhHHH-hc--CCCceEEcCCCCHHHHH
Q 021517 2 KVLIVFDDVTCF-------------SQIESLIGSLDW---LTPVSRIIITTRNKQVLR-NW--GVRKIYEMKALEYHHAI 62 (311)
Q Consensus 2 r~LlVLDdv~~~-------------~~~~~l~~~~~~---~~~gs~IlvTTR~~~va~-~~--~~~~~~~l~~L~~~~a~ 62 (311)
..+|++|+++.. .....+...+.. ...+..||.||....... .. .....+.++..+.++-.
T Consensus 228 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~ 307 (444)
T 2zan_A 228 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARA 307 (444)
T ss_dssp SEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHH
T ss_pred CeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHH
Confidence 468999999854 123445544432 134556666775542211 11 33457889999999999
Q ss_pred HHHHHhhcCCCCCCccHHHHHHHHHHHhCCCc-hHHHHH
Q 021517 63 RLFSRHAFKQNHPDVGYEELSCKVMKYAQGVP-LALKVL 100 (311)
Q Consensus 63 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 100 (311)
.+|...+....... .......|++.+.|.. -.|..+
T Consensus 308 ~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 308 AMFRLHLGSTQNSL--TEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp HHHHHHHTTSCEEC--CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 99988763322111 1245567888888854 344443
No 193
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=68.21 E-value=19 Score=30.69 Aligned_cols=89 Identities=11% Similarity=0.135 Sum_probs=51.4
Q ss_pred EEEEEeCCCCHH----HHHHHHhcCCC-CCCCcEEEEEeCch---------hHHHhcCCCceEEcCCCCHHHHHHHHHHh
Q 021517 3 VLIVFDDVTCFS----QIESLIGSLDW-LTPVSRIIITTRNK---------QVLRNWGVRKIYEMKALEYHHAIRLFSRH 68 (311)
Q Consensus 3 ~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IlvTTR~~---------~va~~~~~~~~~~l~~L~~~~a~~Lf~~~ 68 (311)
-+|++||+.... ..+.+...+.. ...|..||+||... .+...+.....+.+++ +.++-.+++...
T Consensus 100 ~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~ 178 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEK 178 (324)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHH
T ss_pred CEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHH
Confidence 479999996532 12222222110 12456788888643 2233333335789999 999999999888
Q ss_pred hcCCCCCCccHHHHHHHHHHHhCCCch
Q 021517 69 AFKQNHPDVGYEELSCKVMKYAQGVPL 95 (311)
Q Consensus 69 a~~~~~~~~~~~~~~~~i~~~c~glPL 95 (311)
+......- ..+....|++.+ |..-
T Consensus 179 ~~~~~~~l--~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 179 LKEFNLEL--RKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHTTCCC--CHHHHHHHHHHC-SSHH
T ss_pred HHhcCCCC--CHHHHHHHHHhC-CCHH
Confidence 74322111 134566677777 6543
No 194
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=66.07 E-value=24 Score=30.51 Aligned_cols=90 Identities=10% Similarity=0.046 Sum_probs=54.6
Q ss_pred EEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCc-----------------hhHHHhcCCCceEEcCCCCHHHHHH
Q 021517 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRN-----------------KQVLRNWGVRKIYEMKALEYHHAIR 63 (311)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~-----------------~~va~~~~~~~~~~l~~L~~~~a~~ 63 (311)
.+|++|++... +..+.+...+...... .++++|.. ..+...+ ..+.+++++.++..+
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQ 266 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHH
Confidence 48999999864 4456666555433333 34444431 2222222 358999999999999
Q ss_pred HHHHhhcCCCCCCccHHHHHHHHHHHhC-CCchHHH
Q 021517 64 LFSRHAFKQNHPDVGYEELSCKVMKYAQ-GVPLALK 98 (311)
Q Consensus 64 Lf~~~a~~~~~~~~~~~~~~~~i~~~c~-glPLai~ 98 (311)
++...+-.... .-..+....|++.+. |.|-.+.
T Consensus 267 il~~~~~~~~~--~~~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 267 ILRIRCEEEDV--EMSEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHHHHHHHTTC--CBCHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHHhcCCCHHHHH
Confidence 99877643221 122356677888886 7665443
No 195
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=63.56 E-value=63 Score=28.33 Aligned_cols=70 Identities=16% Similarity=0.078 Sum_probs=41.4
Q ss_pred CcEEEEEeCchhHH-Hhc--CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCch-HHHHH
Q 021517 29 VSRIIITTRNKQVL-RNW--GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPL-ALKVL 100 (311)
Q Consensus 29 gs~IlvTTR~~~va-~~~--~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 100 (311)
+..||.||...... ... .....+.+...+.++-.+++...+-..... -..+....|++.+.|..- +|..+
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 34556566543211 111 233578899999999999998776332211 122456788888888654 44444
No 196
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=62.47 E-value=28 Score=31.59 Aligned_cols=98 Identities=14% Similarity=0.171 Sum_probs=55.5
Q ss_pred eEEEEEeCCCCHH--HHHHHHhcCCCCCCCcEEEEEeCchh--HHH-hcCCCceEEcCCCCHHHHHHHHHHhhcCCC---
Q 021517 2 KVLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNKQ--VLR-NWGVRKIYEMKALEYHHAIRLFSRHAFKQN--- 73 (311)
Q Consensus 2 r~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~~--va~-~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~--- 73 (311)
+.+|++|++.... ..+.+...+.. +.-.-|..||.+.. +.. ...-..++.+.+++.++...++.+.+-...
T Consensus 107 ~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~ 185 (447)
T 3pvs_A 107 RTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGY 185 (447)
T ss_dssp CEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSS
T ss_pred CcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhh
Confidence 5689999998653 34555555442 22222333555542 111 112235889999999999999988763311
Q ss_pred --CCCccHHHHHHHHHHHhCCCchHHHHH
Q 021517 74 --HPDVGYEELSCKVMKYAQGVPLALKVL 100 (311)
Q Consensus 74 --~~~~~~~~~~~~i~~~c~glPLai~~~ 100 (311)
....-..+....+++.++|.+-.+..+
T Consensus 186 ~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 186 GGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred ccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 111122356677888888887655433
No 197
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=56.21 E-value=10 Score=32.46 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=46.9
Q ss_pred eEEEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEEeCch-hHHHhcCCCceEEcCCCCHHHHHHHHHHhh
Q 021517 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNK-QVLRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (311)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~-~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a 69 (311)
+-++|+|+++.. +..+.+...+....+.+.+|++|.+. .+...+... .+++.++++++..+.+.+.+
T Consensus 83 ~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 83 RKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred ceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 457899999753 44666666654444567776666443 454555445 99999999999999988776
No 198
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=53.47 E-value=18 Score=31.48 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=38.5
Q ss_pred CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCcccccc-ccccCcccccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWH-CVKVCISYYTCGI 309 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~l~i 309 (311)
.+|+.+.+.++.++.+++.. ++.+|+.+.|+. +++.++. ...++.+|+.+.|
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEE
Confidence 78888888888888888765 688888888865 4777765 3556677766544
No 199
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=50.50 E-value=18 Score=27.49 Aligned_cols=62 Identities=10% Similarity=0.035 Sum_probs=35.0
Q ss_pred eEEEEEeCCCCHH---------H-HHHHHhcCCCCCCCcEEEEEeCchhHHHhc-------CCCceEEcCCCCHHHHHHH
Q 021517 2 KVLIVFDDVTCFS---------Q-IESLIGSLDWLTPVSRIIITTRNKQVLRNW-------GVRKIYEMKALEYHHAIRL 64 (311)
Q Consensus 2 r~LlVLDdv~~~~---------~-~~~l~~~~~~~~~gs~IlvTTR~~~va~~~-------~~~~~~~l~~L~~~~a~~L 64 (311)
+.+||+||++... . .+.+...+. ..+..+|.||......... .--..+.+.+++.++..++
T Consensus 116 ~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~i 193 (195)
T 1jbk_A 116 NVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAI 193 (195)
T ss_dssp TEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTT
T ss_pred CeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHH
Confidence 4689999997642 1 222222221 2345577777765532211 1123688999988887665
Q ss_pred H
Q 021517 65 F 65 (311)
Q Consensus 65 f 65 (311)
+
T Consensus 194 l 194 (195)
T 1jbk_A 194 L 194 (195)
T ss_dssp C
T ss_pred h
Confidence 3
No 200
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.90 E-value=1.1e+02 Score=26.11 Aligned_cols=93 Identities=10% Similarity=0.086 Sum_probs=54.3
Q ss_pred eEEEEEeCCCC--HHHHHHHHhcCCCCCCCcEEEEEeCchh-HHHhc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 021517 2 KVLIVFDDVTC--FSQIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (311)
Q Consensus 2 r~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IlvTTR~~~-va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 77 (311)
+-++|+|++.. .+..+.+...+......+++|++|.... +...+ .-...+.+.+++.++..+.+...+-.....
T Consensus 111 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~-- 188 (340)
T 1sxj_C 111 FKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLK-- 188 (340)
T ss_dssp CEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCC--
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCC--
Confidence 35789999864 3334444443332234566777765432 21111 223478999999999888887665221111
Q ss_pred cHHHHHHHHHHHhCCCchH
Q 021517 78 GYEELSCKVMKYAQGVPLA 96 (311)
Q Consensus 78 ~~~~~~~~i~~~c~glPLa 96 (311)
-..+..+.+++.++|.+--
T Consensus 189 i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 189 LSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp BCHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHcCCCHHH
Confidence 1134567788888888764
No 201
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=46.22 E-value=35 Score=30.12 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=27.4
Q ss_pred EEEEeCCCCH---HHHHHHHhcCCCCCCCcEEEEEeCchhHHHhcCCCceEEc
Q 021517 4 LIVFDDVTCF---SQIESLIGSLDWLTPVSRIIITTRNKQVLRNWGVRKIYEM 53 (311)
Q Consensus 4 LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IlvTTR~~~va~~~~~~~~~~l 53 (311)
+||||++... ...+.+...+.....|..||++|-+..++.. ++..+.+
T Consensus 318 ~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~--~d~i~~l 368 (415)
T 4aby_A 318 SVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR--AHHHYKV 368 (415)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT--CSEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh--cCeEEEE
Confidence 7899999743 2222222222111236778888888888754 3445554
No 202
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=45.12 E-value=8.9 Score=30.67 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=22.0
Q ss_pred EEEEeCCCCHH-----HHHHHHhcCCCCCCCcEEEEEeCchh
Q 021517 4 LIVFDDVTCFS-----QIESLIGSLDWLTPVSRIIITTRNKQ 40 (311)
Q Consensus 4 LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IlvTTR~~~ 40 (311)
|||||++-... ..+.+...+.....+..||+|+|...
T Consensus 123 lvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 123 MVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp EEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred EEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 79999984321 12233333322335667999999963
No 203
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=36.76 E-value=17 Score=18.22 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=13.7
Q ss_pred hCCCchHHHHHHHHhcc
Q 021517 90 AQGVPLALKVLGCFLHK 106 (311)
Q Consensus 90 c~glPLai~~~~~~L~~ 106 (311)
-.-+|||+.++|+.+..
T Consensus 8 rrklplavav~agv~~a 24 (28)
T 2vda_B 8 RRKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCCTHHHHHHHHTTCC
T ss_pred cccCchHHHHHHHHhHh
Confidence 34689999999998754
No 204
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=35.40 E-value=1e+02 Score=27.65 Aligned_cols=91 Identities=12% Similarity=0.013 Sum_probs=54.2
Q ss_pred EEEEeCCCCH--HHHHHHHhcCCCCCCCcEEEEE---------eC----ch----hHHHhcCCCceEEcCCCCHHHHHHH
Q 021517 4 LIVFDDVTCF--SQIESLIGSLDWLTPVSRIIIT---------TR----NK----QVLRNWGVRKIYEMKALEYHHAIRL 64 (311)
Q Consensus 4 LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IlvT---------TR----~~----~va~~~~~~~~~~l~~L~~~~a~~L 64 (311)
++++|++... +..+.+...+.......-|+.| |. .. .+...+ ..+.+.+++.++..+.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~~i 374 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMKQI 374 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHHHH
Confidence 7899999754 5577777776544334322244 22 11 122222 3579999999999999
Q ss_pred HHHhhcCCCCCCccHHHHHHHHHHHh-CCCchHHHH
Q 021517 65 FSRHAFKQNHPDVGYEELSCKVMKYA-QGVPLALKV 99 (311)
Q Consensus 65 f~~~a~~~~~~~~~~~~~~~~i~~~c-~glPLai~~ 99 (311)
+...+-.... .-..+....|++.+ +|.|-.+..
T Consensus 375 L~~~~~~~~~--~~~~~~~~~i~~~a~~g~~r~a~~ 408 (456)
T 2c9o_A 375 IKIRAQTEGI--NISEEALNHLGEIGTKTTLRYSVQ 408 (456)
T ss_dssp HHHHHHHHTC--CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHhCC--CCCHHHHHHHHHHccCCCHHHHHH
Confidence 9877521111 11224566777777 777764443
No 205
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=34.09 E-value=1.9e+02 Score=23.65 Aligned_cols=68 Identities=22% Similarity=0.160 Sum_probs=41.3
Q ss_pred CcEEEEEeCchh-----HHHhcCCCceEEcCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCch-HHHHH
Q 021517 29 VSRIIITTRNKQ-----VLRNWGVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPL-ALKVL 100 (311)
Q Consensus 29 gs~IlvTTR~~~-----va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 100 (311)
+..||.||.... +... ....+.+...+.++-..++...+-..... -..+....+++.+.|.+- ++..+
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 456677776542 2222 33577888888888888887765322111 112456778888988875 44444
No 206
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=30.73 E-value=62 Score=27.95 Aligned_cols=52 Identities=25% Similarity=0.392 Sum_probs=39.9
Q ss_pred CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccc-cccCcccccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHC-VKVCISYYTCGI 309 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~l~i 309 (311)
..|+.+.+.. ++..++... ++.+|+.+.+.++.++.+++. ..++.+|+.+.|
T Consensus 263 ~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 263 TALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 6788888753 477788765 689999999999889998754 566777776654
No 207
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=29.28 E-value=47 Score=29.05 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=24.3
Q ss_pred CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCcccccc-ccccCcccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWH-CVKVCISYYTC 307 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~l 307 (311)
..|+.+++.. .++.+++.. ++.+|+.++++.+ ++.++. ...++.+|+.+
T Consensus 320 ~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 320 TSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKV 371 (394)
T ss_dssp TTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEE
T ss_pred CCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEE
Confidence 5555555532 255554432 4566666666543 555543 23444555444
No 208
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=28.24 E-value=49 Score=24.61 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=17.5
Q ss_pred EEEEeCCCCHH-----HHHHHHhcCCCCCCCc-EEEEEeCc
Q 021517 4 LIVFDDVTCFS-----QIESLIGSLDWLTPVS-RIIITTRN 38 (311)
Q Consensus 4 LlVLDdv~~~~-----~~~~l~~~~~~~~~gs-~IlvTTR~ 38 (311)
+|||||+.... .+-.+..... ..|. .||+||+.
T Consensus 86 lLilDE~~~~~~~~~~~l~~li~~~~--~~g~~~iiits~~ 124 (149)
T 2kjq_A 86 YLAVDQVEKLGNEEQALLFSIFNRFR--NSGKGFLLLGSEY 124 (149)
T ss_dssp EEEEESTTCCCSHHHHHHHHHHHHHH--HHTCCEEEEEESS
T ss_pred EEEEeCccccChHHHHHHHHHHHHHH--HcCCcEEEEECCC
Confidence 78999997532 1222222111 1233 48888874
No 209
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=27.49 E-value=13 Score=29.78 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=6.1
Q ss_pred CceeEEeeeCCCC
Q 021517 257 AEVKYLHWYGYPL 269 (311)
Q Consensus 257 ~~Lr~L~l~~~~i 269 (311)
+.|+.|+|++|.|
T Consensus 98 ~tL~~L~L~~N~I 110 (197)
T 1pgv_A 98 PSLRVLNVESNFL 110 (197)
T ss_dssp SSCCEEECCSSBC
T ss_pred CccCeEecCCCcC
Confidence 4444455444443
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=26.71 E-value=1.9e+02 Score=26.28 Aligned_cols=93 Identities=12% Similarity=0.145 Sum_probs=50.2
Q ss_pred eEEEEEeCCCCH-------------HHHHHHHhcCCC--CCCCcEEEEEeCchhH-HHhc----CCCceEEcCCCCHHHH
Q 021517 2 KVLIVFDDVTCF-------------SQIESLIGSLDW--LTPVSRIIITTRNKQV-LRNW----GVRKIYEMKALEYHHA 61 (311)
Q Consensus 2 r~LlVLDdv~~~-------------~~~~~l~~~~~~--~~~gs~IlvTTR~~~v-a~~~----~~~~~~~l~~L~~~~a 61 (311)
..+|+||+++.. .....+...+.. ...+..||.||..... .... .....+.+...+.++-
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR 377 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHH
Confidence 358999999311 112333332221 2234566667665532 1111 3345789999999999
Q ss_pred HHHHHHhhcCCCC-CCccHHHHHHHHHHHhCCC-chHHH
Q 021517 62 IRLFSRHAFKQNH-PDVGYEELSCKVMKYAQGV-PLALK 98 (311)
Q Consensus 62 ~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~c~gl-PLai~ 98 (311)
.++|...+-.... ....+ .++++.+.|. +-.+.
T Consensus 378 ~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 378 LEILQIHTKNMKLADDVDL----EQVANETHGHVGADLA 412 (489)
T ss_dssp HHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHH
T ss_pred HHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHH
Confidence 9999887632221 12223 4466667665 43343
No 211
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=25.17 E-value=2.9e+02 Score=22.85 Aligned_cols=91 Identities=14% Similarity=0.199 Sum_probs=51.3
Q ss_pred eEEEEEeCCCCHH----------------HHHHHHhcCCC--CCCCcEEEEEeCchhHHH-h-c---CCCceEEcCCCCH
Q 021517 2 KVLIVFDDVTCFS----------------QIESLIGSLDW--LTPVSRIIITTRNKQVLR-N-W---GVRKIYEMKALEY 58 (311)
Q Consensus 2 r~LlVLDdv~~~~----------------~~~~l~~~~~~--~~~gs~IlvTTR~~~va~-~-~---~~~~~~~l~~L~~ 58 (311)
..+|++|+++... ....+...+.. ...+..||.||...+... . . .....+.++..+.
T Consensus 109 p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~ 188 (301)
T 3cf0_A 109 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 188 (301)
T ss_dssp SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCH
T ss_pred CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCH
Confidence 3689999997421 12333322211 123556777776553221 1 1 2346789999999
Q ss_pred HHHHHHHHHhhcCCCC-CCccHHHHHHHHHHHhCCCchH
Q 021517 59 HHAIRLFSRHAFKQNH-PDVGYEELSCKVMKYAQGVPLA 96 (311)
Q Consensus 59 ~~a~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~c~glPLa 96 (311)
++-.+++....-.... ....+ ..+++.+.|.|-+
T Consensus 189 ~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 189 KSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp HHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred HHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 9999988776632221 12222 3455667777644
No 212
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=24.88 E-value=57 Score=28.49 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=39.1
Q ss_pred CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCccccccccccCcccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHCVKVCISYYTC 307 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~l 307 (311)
..|+.+++..+ ++.+++.. ++.+|+.++++.+ ++.......+..+|+.+
T Consensus 343 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 343 TSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred CCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 78999999765 88888765 6999999999764 66666777888888765
No 213
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=24.50 E-value=19 Score=27.55 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=19.5
Q ss_pred EEEEEeCCCC--HHHH-----HHHHhcCCCCCCCcEEEEEeCch
Q 021517 3 VLIVFDDVTC--FSQI-----ESLIGSLDWLTPVSRIIITTRNK 39 (311)
Q Consensus 3 ~LlVLDdv~~--~~~~-----~~l~~~~~~~~~gs~IlvTTR~~ 39 (311)
-+|||||++. .+.| ..+..... ..|..||+||...
T Consensus 102 ~llilDE~~~~~~~~~~~~~l~~ll~~~~--~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 102 PVLVLDDLGSERLSDWQRELISYIITYRY--NNLKSTIITTNYS 143 (180)
T ss_dssp SEEEEETCSSSCCCHHHHHHHHHHHHHHH--HTTCEEEEECCCC
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHHHHHHH--HcCCCEEEEcCCC
Confidence 3799999973 2222 22222211 2466788888643
No 214
>2gkw_B Tumor necrosis factor receptor superfamily member; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens}
Probab=24.07 E-value=50 Score=16.43 Aligned_cols=17 Identities=18% Similarity=0.071 Sum_probs=12.8
Q ss_pred CCCCCCCcEEEEEeCch
Q 021517 23 LDWLTPVSRIIITTRNK 39 (311)
Q Consensus 23 ~~~~~~gs~IlvTTR~~ 39 (311)
+|....|+-++|||...
T Consensus 4 lPa~eeGaT~lVtTKT~ 20 (26)
T 2gkw_B 4 VPATELGSTELVTTKTA 20 (26)
T ss_pred ccccccCceEEEEeccC
Confidence 45556789999999754
No 215
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=23.54 E-value=2.5e+02 Score=23.96 Aligned_cols=21 Identities=0% Similarity=0.077 Sum_probs=18.7
Q ss_pred ceEEcCCCCHHHHHHHHHHhh
Q 021517 49 KIYEMKALEYHHAIRLFSRHA 69 (311)
Q Consensus 49 ~~~~l~~L~~~~a~~Lf~~~a 69 (311)
..+.+.+.+.++-.+++..++
T Consensus 191 ~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 191 TEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp EEEECCCCCHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHH
Confidence 468999999999999998876
No 216
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=22.04 E-value=98 Score=26.91 Aligned_cols=49 Identities=10% Similarity=0.246 Sum_probs=25.2
Q ss_pred CceeEEeeeCCCCCCCCCCC--CCCCceEEEcCCCCcccccc-ccccCcccccc
Q 021517 257 AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWH-CVKVCISYYTC 307 (311)
Q Consensus 257 ~~Lr~L~l~~~~i~~lP~~i--~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~l 307 (311)
..|+.+++.. +++.+++.. ++.+|+.+.|..+ ++.++. ...++.+|+.+
T Consensus 311 ~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 311 ISLKSIDIPE-GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TTCCEEECCT-TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred CCcCEEEeCC-cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 5566666643 255554433 4566666666443 555543 33455555544
No 217
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=20.64 E-value=1.2e+02 Score=19.45 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=31.8
Q ss_pred CCCchHHHHHHHHhccccHHHHHHHHHHHhccCc-ccHHHHHhhhcccCchhhhh
Q 021517 91 QGVPLALKVLGCFLHKREKEVWESATDKLQRILY-PSILEVLKISYDSLDDKEKN 144 (311)
Q Consensus 91 ~glPLai~~~~~~L~~~~~~~w~~~~~~l~~~~~-~~i~~~l~~sy~~L~~~~k~ 144 (311)
||.|.-...+..++.. +.+++...++.....+. .+...-++-+++.++.+.|.
T Consensus 1 ~~Cpal~~~v~~~l~~-s~~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~ 54 (70)
T 1utg_A 1 GICPRFAHVIENLLLG-TPSSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRE 54 (70)
T ss_dssp CCCHHHHHHHHHHHHS-CHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCchhHHHHHHHHhcC-CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5678888888888877 55666666554333221 22344556667777665543
No 218
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=20.20 E-value=1.7e+02 Score=23.66 Aligned_cols=60 Identities=12% Similarity=0.253 Sum_probs=31.4
Q ss_pred EEEEeCCCCHH--HHHHHHhcCCCC-----------CCCcEEEEEeCch--h----------HHHhcCCCceEEcCCCCH
Q 021517 4 LIVFDDVTCFS--QIESLIGSLDWL-----------TPVSRIIITTRNK--Q----------VLRNWGVRKIYEMKALEY 58 (311)
Q Consensus 4 LlVLDdv~~~~--~~~~l~~~~~~~-----------~~gs~IlvTTR~~--~----------va~~~~~~~~~~l~~L~~ 58 (311)
+|+||++.... ..+.+...+..+ ..+.+||.||... . ....+.. ..+.++++++
T Consensus 103 ~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~ 181 (265)
T 2bjv_A 103 TLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPLRE 181 (265)
T ss_dssp EEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCGGG
T ss_pred EEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCChhh
Confidence 78999998542 333343332211 1345788887653 1 1112221 3578888876
Q ss_pred --HHHHHH
Q 021517 59 --HHAIRL 64 (311)
Q Consensus 59 --~~a~~L 64 (311)
++-..+
T Consensus 182 R~~di~~l 189 (265)
T 2bjv_A 182 RESDIMLM 189 (265)
T ss_dssp CHHHHHHH
T ss_pred hhHHHHHH
Confidence 444443
Done!