Query 021518
Match_columns 311
No_of_seqs 236 out of 1780
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:37:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02883 Branched-chain amino 100.0 1.5E-68 3.2E-73 519.6 29.6 296 12-307 2-306 (384)
2 KOG0975 Branched chain aminotr 100.0 2.8E-67 6E-72 496.5 22.7 254 53-307 37-299 (379)
3 PLN02259 branched-chain-amino- 100.0 1.8E-66 4E-71 505.8 27.5 299 7-307 1-310 (388)
4 PLN02782 Branched-chain amino 100.0 4.1E-64 8.9E-69 491.4 29.1 255 53-307 62-324 (403)
5 PLN03117 Branched-chain-amino- 100.0 1.9E-54 4E-59 418.0 30.2 255 52-307 11-273 (355)
6 PRK13357 branched-chain amino 100.0 2.9E-50 6.3E-55 389.0 30.4 254 54-307 10-271 (356)
7 TIGR01123 ilvE_II branched-cha 100.0 1.1E-42 2.4E-47 330.4 24.6 222 86-307 1-231 (313)
8 TIGR01122 ilvE_I branched-chai 100.0 2.8E-40 6E-45 311.8 24.1 211 86-307 1-224 (298)
9 PRK07544 branched-chain amino 100.0 4.9E-40 1.1E-44 309.4 23.4 208 85-307 11-229 (292)
10 PRK06606 branched-chain amino 100.0 1.5E-39 3.3E-44 308.1 24.9 212 85-307 9-232 (306)
11 cd01557 BCAT_beta_family BCAT_ 100.0 3.5E-39 7.6E-44 302.0 25.2 207 98-307 1-215 (279)
12 COG0115 IlvE Branched-chain am 100.0 2.8E-39 6E-44 303.4 24.3 206 85-305 4-221 (284)
13 PRK12479 branched-chain amino 100.0 4.7E-39 1E-43 303.9 24.2 207 85-307 6-224 (299)
14 PRK08320 branched-chain amino 100.0 1.4E-38 3.1E-43 298.7 24.6 207 85-307 5-223 (288)
15 PRK13356 aminotransferase; Pro 100.0 3.3E-38 7.2E-43 296.2 25.0 206 85-307 9-225 (286)
16 cd01558 D-AAT_like D-Alanine a 100.0 1.5E-37 3.2E-42 288.7 23.7 203 86-307 1-214 (270)
17 PLN02845 Branched-chain-amino- 100.0 3.1E-37 6.8E-42 296.1 24.8 204 85-306 43-256 (336)
18 PRK07650 4-amino-4-deoxychoris 100.0 5.4E-37 1.2E-41 287.4 24.1 204 85-307 2-216 (283)
19 PRK06680 D-amino acid aminotra 100.0 1.4E-36 3.1E-41 285.2 25.7 203 85-307 5-221 (286)
20 PRK07849 4-amino-4-deoxychoris 100.0 1.4E-36 3.1E-41 286.3 24.5 206 85-308 9-232 (292)
21 TIGR03461 pabC_Proteo aminodeo 100.0 2.2E-36 4.8E-41 279.7 23.8 200 86-307 1-210 (261)
22 TIGR01121 D_amino_aminoT D-ami 100.0 4.7E-36 1E-40 280.3 24.7 203 85-307 2-215 (276)
23 PRK12400 D-amino acid aminotra 100.0 1E-35 2.3E-40 279.9 24.6 204 85-307 7-222 (290)
24 PRK06092 4-amino-4-deoxychoris 100.0 1.3E-35 2.9E-40 275.7 23.8 201 85-307 2-212 (268)
25 cd01559 ADCL_like ADCL_like: 4 100.0 1.4E-35 3E-40 272.8 22.7 187 103-307 1-196 (249)
26 cd00449 PLPDE_IV PyridoxaL 5'- 100.0 9E-35 2E-39 267.2 24.4 189 103-307 1-200 (256)
27 PRK09266 hypothetical protein; 100.0 5.6E-34 1.2E-38 264.8 23.8 193 85-306 5-203 (266)
28 PRK07546 hypothetical protein; 99.9 1.5E-25 3.3E-30 201.6 19.8 156 110-296 4-161 (209)
29 PF01063 Aminotran_4: Aminotra 99.9 2.4E-23 5.2E-28 188.1 19.3 162 129-305 1-176 (231)
30 PRK07101 hypothetical protein; 99.8 2.6E-19 5.6E-24 158.9 17.1 142 110-295 3-146 (187)
31 KOG3442 Uncharacterized conser 46.4 41 0.00089 28.2 4.6 46 138-187 58-104 (132)
32 COG5475 Uncharacterized small 31.8 43 0.00092 24.2 2.2 24 72-95 26-55 (60)
33 PF03656 Pam16: Pam16; InterP 27.0 44 0.00095 28.0 1.9 41 137-181 56-97 (127)
34 PF07075 DUF1343: Protein of u 26.0 46 0.00099 32.9 2.1 63 98-185 200-263 (365)
35 PRK13740 conjugal transfer pro 25.5 47 0.001 25.0 1.6 10 128-137 42-51 (70)
No 1
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=1.5e-68 Score=519.64 Aligned_cols=296 Identities=58% Similarity=0.923 Sum_probs=271.3
Q ss_pred HHHh-hhhhhccccccccccccccchhhhhhcccccCCCCCCCCccccCCCCCCCCCCCCccCCceeEEEeec-ceEECC
Q 021518 12 CLRN-FSQSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEKG 89 (311)
Q Consensus 12 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~-~~w~ng 89 (311)
.||+ |.|++.++|+++..+.+.++.+++..++...........++...++||++|+||+++||||++++|.+ ++|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~w~~~ 81 (384)
T PLN02883 2 ALRRCLPQSSTTSSYLSKIWGFRMHGTKAAASVVEEHVSGAEREDEEYADVDWDKLGFSLVRTDFMFATKSCRDGNFEQG 81 (384)
T ss_pred chhhhccccccchhhhhccccceeccccccccchhhhcccccccccccccCCchhcCcCCeecCceEEEEEcCCCcccCC
Confidence 3566 78999999999999999999988887765433333446677778899999999999999999999876 489999
Q ss_pred eeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCc
Q 021518 90 RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 169 (311)
Q Consensus 90 ~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~~~~w 169 (311)
+|+|++++.|||++++|||||+||||||+|+++||++++||+++|++||++||++|+||.++.++|.++|+++++.|+.|
T Consensus 82 ~i~p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~w 161 (384)
T PLN02883 82 YLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRW 161 (384)
T ss_pred eEeeCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeChhHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEEEEecCCcccccCCCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcccchHHHHH
Q 021518 170 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLK 249 (311)
Q Consensus 170 vP~~~~~~lyIRp~~~g~~~~lgv~p~~~~~~~I~~~P~~~y~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~ 249 (311)
||+.+++++||||+++++++.+|+.++.+++++|+++|+++|++.|.+++++.++++++|++|++++++|++|||+++++
T Consensus 162 vp~~~~~~lYIRp~v~~~~~~lG~~~~~~~~~~i~~~p~~~y~~~g~~~v~l~~~~~~~Ra~~~g~g~~K~~~nYa~~ll 241 (384)
T PLN02883 162 VPPPGKGSLYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLE 241 (384)
T ss_pred CCCCCCceEEEEEEEEecCCccCCCCCCCeEEEEEEEecccccccCcceEEEEECccccccCCCCCcccchhhhHHHHHH
Confidence 99988789999999999998899988888999999999999998888899999987789999999999999999999999
Q ss_pred HHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEEecCCCC-----H--HHHHHHHHhc
Q 021518 250 AISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSKFWTLF-----L--ISLLYVALFS 307 (311)
Q Consensus 250 a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP~l~~-----~--~~vl~la~~~ 307 (311)
++++|+++||||+||||..++|+|+|+++||||++++++|+||++++ + ++||++|...
T Consensus 242 a~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNlF~v~~~~l~TP~l~~~iLpGITR~svl~la~~~ 306 (384)
T PLN02883 242 VMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATSGTILGGITRKSIIEIALDL 306 (384)
T ss_pred HHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEeCCCcCCcCcCHHHHHHHHHHHHC
Confidence 99999999999999999855689999999999999999999999953 3 9999998754
No 2
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-67 Score=496.53 Aligned_cols=254 Identities=52% Similarity=0.863 Sum_probs=244.0
Q ss_pred CCccccCCCCCCCCCCCCccCCceeEEEeecceEECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChH
Q 021518 53 SDDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPD 132 (311)
Q Consensus 53 ~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld 132 (311)
..+.+...+||++|+||.++||||++++|++++|..|+|.|++++.+||.+.+|||||++|||||+||++||++++|||+
T Consensus 37 ~~~~k~~~~d~~~L~fg~~~td~m~~~k~~~~gw~~~~I~p~gni~~~Paa~vlhy~~~lfEG~KAyRt~d~~i~LFrPd 116 (379)
T KOG0975|consen 37 QTDEKPAPIDWDELGFGLVFTDHMLTIKWSEDGWSQGEISPFGNLSLHPAAKVLHYGQGLFEGLKAYRTEDGKIRLFRPD 116 (379)
T ss_pred cCCCccCcCCHHHhccCCcccceeEEEeccccCcCCCCccCcCCEeeChhhhceecchhhccccccccCCCCeEEEecch
Confidence 44667778999999999999999999999977899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCceEEEEEEEEecCCcccccCCCCcEEEEEEeecCCcc
Q 021518 133 QNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF 212 (311)
Q Consensus 133 ~Hl~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p~~~~~~~I~~~P~~~y~ 212 (311)
.|++||++||.|++||.|+.+++.++|++++.+|++|||+.+++++||||+++|+++.+|+.++++++|+|+++|+++||
T Consensus 117 ~N~~Rm~~sA~r~~lP~p~~~e~ie~i~~lv~~~~~wVP~~~~~SLyirp~l~Gt~~~Lgv~~~~e~~l~vi~spvg~yf 196 (379)
T KOG0975|consen 117 QNMDRMLRSAERACLPSPDVEEFIEAIKQLVLADKEWVPPPGKGSLYIRPLLIGTDPVLGVSPAPEATLFVIVSPVGPYF 196 (379)
T ss_pred hhHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCcccCCCCCceEEEeeeeccCCcccccccCCcceEEEEEcccchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCEEEEEeccccccCCCCCCCCCcccchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCe--EE
Q 021518 213 KEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLL--NS 290 (311)
Q Consensus 213 ~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~--l~ 290 (311)
+.|++|++|.+.+.++|++|+|+|+.|.++||+++++++.||+++||+|+||||.. +++|+|+++||||+|++|+ |+
T Consensus 197 ~~g~~~v~L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~G~~dvLwL~~d-~~~ItEv~tmNiF~v~~n~~elv 275 (379)
T KOG0975|consen 197 KSGFKGVNLLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSKGASDVLWLDGD-GGYITEVGTMNIFMVKKNEDELV 275 (379)
T ss_pred cccccceEEEEecceeecCCCCCCceeeccccchHHHHHHHHHhcCcceeEEEecC-CCceeeccceeEEEEEcCceeEe
Confidence 99999999999999999999999999999999999999999999999999999995 3499999999999999998 99
Q ss_pred ecCCCCH-------HHHHHHHHhc
Q 021518 291 KFWTLFL-------ISLLYVALFS 307 (311)
Q Consensus 291 TP~l~~~-------~~vl~la~~~ 307 (311)
||++++. +++|+||..-
T Consensus 276 TPp~dg~ILpGvTR~sileLa~~~ 299 (379)
T KOG0975|consen 276 TPPLDGTILPGVTRKSILELARDL 299 (379)
T ss_pred cCCCCCcccCCccHHHHHHHHHHh
Confidence 9999843 9999999764
No 3
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=1.8e-66 Score=505.78 Aligned_cols=299 Identities=64% Similarity=1.062 Sum_probs=269.9
Q ss_pred HHH-HHHHHh-hhhhhccccccccccccccchhhhhhccccc-CCCCCCCCccccCCCCCCCCCCCCccCCceeEEEeec
Q 021518 7 MIR-NACLRN-FSQSLRVGSAFLKSGDFCRYTSQAAASLQQD-CEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSN 83 (311)
Q Consensus 7 ~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~ 83 (311)
||+ ..+||+ |+..++++ . ..++.+.++.+++..++... ........++...++||++|+||+++||||++++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~~td~m~~~~~~~ 78 (388)
T PLN02259 1 MIKTITSLRKTLVLPLHLH-I-RTLQTFAKYNAQAASALREERKKPLYQNGDDVYADLDWDNLGFGLNPADYMYVMKCSK 78 (388)
T ss_pred CccchhhhhhheEeeeehh-h-hhhhhhhhhccccccccchhhccccccccccccccCCccccCCCCcccCceEEEEECC
Confidence 667 788999 88888876 3 67888888888877776432 2223345566778999999999999999999999976
Q ss_pred -ceEECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 021518 84 -DYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQT 162 (311)
Q Consensus 84 -~~w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~~~e~~~~~i~~l 162 (311)
|+|.||+++|++++.|+|.|++|||||+||||||+|+.+||++++||+++|++||++||++|+||.++.++|.++|+++
T Consensus 79 ~~~w~~g~ivp~~~~~i~~~drgl~YGdgvFEglkayr~~~G~i~lfr~~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~l 158 (388)
T PLN02259 79 DGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQT 158 (388)
T ss_pred CCeEECCEEeEchhCeeCchhhHHHhhhhhhhcEEEEECCCCeEeecCcHHHHHHHHHhHHHhCCCCcCHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcCCCCCCceEEEEEEEEecCCcccccCCCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCccc
Q 021518 163 ALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAIS 242 (311)
Q Consensus 163 v~~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p~~~~~~~I~~~P~~~y~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~g 242 (311)
++.|+.|||+.+++++||||+++|+++.+|+.|+.+++++|+++|+++|++.|.+++++.+++++.|++|++++++|++|
T Consensus 159 v~~n~~~vp~~~~~~lyiRp~v~g~~~~lG~~p~~~~~~~i~~~p~~~~~~~g~~~i~l~v~~~~~Ra~p~~~g~~K~~~ 238 (388)
T PLN02259 159 ALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSIT 238 (388)
T ss_pred HHhccccCCCCCCceEEEEEEEEecCCccCcCCCCCcEEEEEEEechhhhhcCcceEEEEeecceeccCCCCCcccchhh
Confidence 99999999998888999999999998888998878899999999999998888888999987679999999999999988
Q ss_pred chHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEEecCCCC-----H--HHHHHHHHhc
Q 021518 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSKFWTLF-----L--ISLLYVALFS 307 (311)
Q Consensus 243 NY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP~l~~-----~--~~vl~la~~~ 307 (311)
||+++++++++|+++||||+||||..++|+|+|+++||||+++|++|+||++++ + ++||++|...
T Consensus 239 NY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~TP~l~~~iL~GITR~sIl~la~~~ 310 (388)
T PLN02259 239 NYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTISTPATNGTILEGITRKSVMEIASDQ 310 (388)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEEcCcEEEEEEECCEEEcCCCcCCcCcCHHHHHHHHHHHHC
Confidence 999999999999999999999999866899999999999999999999999852 2 9999998764
No 4
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=4.1e-64 Score=491.41 Aligned_cols=255 Identities=69% Similarity=1.174 Sum_probs=238.3
Q ss_pred CCccccCCCCCCCCCCCCccCCceeEEEeec-ceEECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeCh
Q 021518 53 SDDESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRP 131 (311)
Q Consensus 53 ~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~-~~w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrl 131 (311)
....+..++||++|+||+++||||++++|++ |+|.||+|+|++++.|+|.|++|||||+||||||+|+++||++++|||
T Consensus 62 ~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~w~ng~ivp~~~~~i~~~d~gl~YGdgvFEg~kayr~~~G~i~lFr~ 141 (403)
T PLN02782 62 TEVTELADIDWDNLGFGLVPTDYMYIMKCNRDGEFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRP 141 (403)
T ss_pred cCCcccccCCccccCCCccccCceEEEEECCCCcEeCCEEEECCCCEeChhhhHHhhhhhhhheEEEEEcCCCcEeeeCh
Confidence 3344456899999999999999999999965 589999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCceEEEEEEEEecCCcccccCCCCcEEEEEEeecCCc
Q 021518 132 DQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNY 211 (311)
Q Consensus 132 d~Hl~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p~~~~~~~I~~~P~~~y 211 (311)
++|++||++||++|+||.++.++|.++|+++++.|+.|||+.+++++||||+++++++.+|+.++.+++++|+++|+++|
T Consensus 142 d~H~~RL~~SA~rL~lp~~~~e~l~~~i~~lv~~n~~~vP~~~~~~lyiRp~v~g~~~~lG~~~~~~~~~~i~~~p~~~~ 221 (403)
T PLN02782 142 EENAIRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNY 221 (403)
T ss_pred HHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCCcCcCCCCCcEEEEEEEECccc
Confidence 99999999999999999999999999999999999999999888899999999999988999888889999999999999
Q ss_pred ccCCCcCEEEEEeccccccCCCCCCCCCcccchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEEe
Q 021518 212 FKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSK 291 (311)
Q Consensus 212 ~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~T 291 (311)
++.|.+++++.++++++|++|++++++|++|||+++++++++|+++||+|+||||..++|+|+|+++||||+++|++|+|
T Consensus 222 ~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~~nY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~T 301 (403)
T PLN02782 222 FKEGVAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVIST 301 (403)
T ss_pred cccCCccEEEEEeCceeecCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEc
Confidence 88888899999987799999999999999999999999999999999999999997558999999999999999999999
Q ss_pred cCCCC-H------HHHHHHHHhc
Q 021518 292 FWTLF-L------ISLLYVALFS 307 (311)
Q Consensus 292 P~l~~-~------~~vl~la~~~ 307 (311)
|+++. + ++||++|...
T Consensus 302 P~l~~~iLpGITR~svlela~~~ 324 (403)
T PLN02782 302 PAIKGTILPGITRKSIIDVARSQ 324 (403)
T ss_pred CCCcCCcCcCHHHHHHHHHHHHc
Confidence 99852 2 9999998754
No 5
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=1.9e-54 Score=418.02 Aligned_cols=255 Identities=58% Similarity=1.032 Sum_probs=229.1
Q ss_pred CCCccccCCCCCCCCCCCCccCCceeEEEeecc-eEECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeC
Q 021518 52 YSDDESADHMDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFR 130 (311)
Q Consensus 52 ~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~-~w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFr 130 (311)
........++||++||||.+|||||+.++|.++ +|.||+++|.+++.|++.|++|+||||||||||+|+..||++++|+
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~~~m~~~~~~~~~~~~ng~~v~~~~a~i~~~drgl~yGDGvFEtir~y~~~~G~i~lf~ 90 (355)
T PLN03117 11 SKADEKYANVKWEELGFALVPTDYMYVAKCKQGESFSEGKIVPYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFR 90 (355)
T ss_pred CCccccccccCccccCCCccccCceEEEEcCCCCeEECCEEEEchhceeCcchhhhhhcceeEeeEEEEECCCCcEeeeC
Confidence 345555677999999999999999999999876 7999999999999999999999999999999999998899999999
Q ss_pred hHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCceEEEEEEEEecCCcccccCCCCcEEEEEEeecCC
Q 021518 131 PDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGN 210 (311)
Q Consensus 131 ld~Hl~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p~~~~~~~I~~~P~~~ 210 (311)
+++|++||++||++|+||.++.++|.+.|.++++.|+.|+|+...+.+||||+++++++..|+.+..++.++|++.|..+
T Consensus 91 l~~Hl~RL~~Sa~~L~i~~p~~~~l~~~i~~lv~~n~~~i~~~~~~~~yir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~ 170 (355)
T PLN03117 91 PDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGKGTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGN 170 (355)
T ss_pred cHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccccCCCCCcEEEEEEEEEecCccCcCCCCCcEEEEEEEeccc
Confidence 99999999999999999998999999999999999999999877778999999988877788877667889999999876
Q ss_pred cccCCCcCEEEEEeccccccCCCCCCCCCcccchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEE
Q 021518 211 YFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNS 290 (311)
Q Consensus 211 y~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~ 290 (311)
++.. .+|+++.+++++.|+.|.+++++|+++||+.++++.++|+++||||+|+||..++|+|+|++++|||+++|++|+
T Consensus 171 ~~~~-~~gi~l~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~G~deaL~ld~~~~g~v~E~~~sNlF~v~~~~l~ 249 (355)
T PLN03117 171 YHKA-SSGLNLKVDHKHRRAHSGGTGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKGNIVS 249 (355)
T ss_pred cccC-CCCEEEEEcCceEeCCCCCccchhhhhhhHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEE
Confidence 6543 478999887567898888899999976999999999999999999999999743479999999999999999999
Q ss_pred ecCCC-----CH--HHHHHHHHhc
Q 021518 291 KFWTL-----FL--ISLLYVALFS 307 (311)
Q Consensus 291 TP~l~-----~~--~~vl~la~~~ 307 (311)
||+++ |+ ++||++|...
T Consensus 250 TP~l~~~iL~GItR~~vl~la~~~ 273 (355)
T PLN03117 250 TPPTSGTILPGVTRKSISELARDI 273 (355)
T ss_pred eCCCcCCCCCCHHHHHHHHHHHHC
Confidence 99984 22 8999998653
No 6
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=2.9e-50 Score=388.97 Aligned_cols=254 Identities=44% Similarity=0.760 Sum_probs=225.2
Q ss_pred CccccCCCCCCCCCCCCccCCceeEEEeecceEECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHh
Q 021518 54 DDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQ 133 (311)
Q Consensus 54 ~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~ 133 (311)
....+..+||++||||++.+|||++..|++|.|.||+++|.+++.|++.|++|+||||||||+|+|++.+|++++|++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~vp~~~a~is~~Drg~~yGDGvFEtir~~~~~~G~~~~f~l~~ 89 (356)
T PRK13357 10 TSDEKRAIDWANLGFGYVFTDHMVVIDYKDGKWHDARLVPYGPLELDPAATVLHYGQEIFEGLKAYRHKDGSIVLFRPDA 89 (356)
T ss_pred ccccccCCCccccCCCccccceeEEEEecCCcccCCeEeeCCCceeCcccchhhhcceeeeeEEEEEcCCCcEeeeChHH
Confidence 33445668999999999999999999999999999999999999999999999999999999999988889988999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCcCCC-CCCceEEEEEEEEecCCcccccCCCCcEEEEEEeecCCcc
Q 021518 134 NAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPP-PGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF 212 (311)
Q Consensus 134 Hl~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~~~~wvP~-~~~~~lyIRp~~~g~~~~lgv~p~~~~~~~I~~~P~~~y~ 212 (311)
|++||.+||++|+|+.++.+++.+.+.++++.|+.|+++ ..++.+|||++++++.+.+|+.+..+++++|++.|..+++
T Consensus 90 Hl~RL~~Sa~~L~i~~~~~~~l~~~i~~li~~n~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~ 169 (356)
T PRK13357 90 NAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGASLYLRPFMIATEPFLGVKPAEEYIFCVIASPVGAYF 169 (356)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCCCCCccEEEEEEEEccCCcccccCCCccEEEEEEEechhhc
Confidence 999999999999999779999999999999999876643 3346899999999887777876656789999999887766
Q ss_pred cCCCcCEEEEEeccccccCCCCCCCCCcccchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEEec
Q 021518 213 KEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSKF 292 (311)
Q Consensus 213 ~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP 292 (311)
..+.+++++.++..+.|..|..++++|+.+||+.+++++++|+++||||+|++|..++|+|+|++++|||++++++++||
T Consensus 170 ~~~~~~v~l~~~~~~~r~~~~~l~~~Kt~~nyl~~vla~~eA~~~G~deaL~ld~~~~G~V~E~s~sNlF~v~~~~l~TP 249 (356)
T PRK13357 170 KGGVKPVSIWVSDEYDRAAPGGTGAAKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTP 249 (356)
T ss_pred ccCCCceEEEEcCCeEecCCCCcchhhcccccHHHHHHHHHHHHCCCCEEEEEcCCCCCEEEEcCcEEEEEEECCEEEEC
Confidence 66667888888756889888888999995599999999999999999999999964479999999999999999999999
Q ss_pred CCCC-----H--HHHHHHHHhc
Q 021518 293 WTLF-----L--ISLLYVALFS 307 (311)
Q Consensus 293 ~l~~-----~--~~vl~la~~~ 307 (311)
|++. + +.||++|...
T Consensus 250 pl~~giL~GItR~~vlela~~~ 271 (356)
T PRK13357 250 PLSGSILPGITRDSLLQLAEDL 271 (356)
T ss_pred CCCCCCCcchHHHHHHHHHHHC
Confidence 9953 2 8888988653
No 7
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=100.00 E-value=1.1e-42 Score=330.40 Aligned_cols=222 Identities=48% Similarity=0.794 Sum_probs=193.5
Q ss_pred EECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 021518 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165 (311)
Q Consensus 86 w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~ 165 (311)
|.||+++|.+++.|++.|++|+||||||||||+|+..+|++++|++++|++||++||++|+|+.++.+++.+.+.++++.
T Consensus 1 ~~nG~~~~~~~a~i~~~Drg~~yGdGvFEtir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~~~~~~l~~~l~~~~~~ 80 (313)
T TIGR01123 1 WHNGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLEALRQLVKA 80 (313)
T ss_pred CCCCEEEECccCeeCcchhHHHhhhhheeeeeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999998888999899999999999999999999977999999999999999
Q ss_pred cCCcCCCC-CCceEEEEEEEEecCCcccccCCCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcccch
Q 021518 166 NKRWVPPP-GKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNY 244 (311)
Q Consensus 166 ~~~wvP~~-~~~~lyIRp~~~g~~~~lgv~p~~~~~~~I~~~P~~~y~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~gNY 244 (311)
|+.++|+. .++.+||||+++++++.+|+.+.+.+.++|++.|..+++..|.+++++.+...+.|..|..++++|+.+||
T Consensus 81 ~~~~~~~~~~~~~~~ir~~v~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~K~~~ny 160 (313)
T TIGR01123 81 NKDWVPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVFASPVGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNY 160 (313)
T ss_pred ccccCCCCCCCCcEEEEeEEEecCCccccCCCCccEEEEEEEEchhhccccccceeEEecccceecCCCCCccceecccc
Confidence 98877643 34579999999988877788766678899999988777666666777766556788888778999996699
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeC-CeEEecCCCC-----H--HHHHHHHHhc
Q 021518 245 APVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKV-LLNSKFWTLF-----L--ISLLYVALFS 307 (311)
Q Consensus 245 ~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~-~~l~TP~l~~-----~--~~vl~la~~~ 307 (311)
+.+++++++|+++||||+|++|++.+|+|+|++++|||++++ |+++|||++. + +.||++|...
T Consensus 161 l~~vla~~eA~~~g~deal~ld~~g~g~v~E~~~sNlf~v~~~g~l~Tp~l~~~~L~GItR~~vi~l~~~~ 231 (313)
T TIGR01123 161 AASLLAQAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDL 231 (313)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCCeEEEEcCcEeEEEEEcCCEEEeCCCCCCCCcchHHHHHHHHHHHc
Confidence 999999999999999999999983223499999999999985 7999999862 2 8888888643
No 8
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=100.00 E-value=2.8e-40 Score=311.78 Aligned_cols=211 Identities=28% Similarity=0.410 Sum_probs=182.0
Q ss_pred EECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHH
Q 021518 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164 (311)
Q Consensus 86 w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv~ 164 (311)
|.||+++|.+++.|++.|++|+||||+|||||+|++.||. ++|++++|++||.+||++|+|+.+ +.+++.+.|.++++
T Consensus 1 ~~ng~~v~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~~-~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~ 79 (298)
T TIGR01122 1 WMDGEFVDWEDAKVHVLTHALHYGTGVFEGIRAYDTDKGP-AIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETLR 79 (298)
T ss_pred CcCCEEEEhhhcccChhhhhhhccceEEEEEEEEcCCCcc-eeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999664433 489999999999999999999977 89999999999999
Q ss_pred HcCCcCCCCCCceEEEEEEEEecCCcccccCC--CCcEEEEEEeecCCcccCC--CcCEEEEEeccccccCCCC-CCCCC
Q 021518 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATPGG-AGGVK 239 (311)
Q Consensus 165 ~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p~--~~~~~~I~~~P~~~y~~~g--~~~v~l~v~~~~~Ra~p~g-~g~~K 239 (311)
.++. ..+|||++++++.+.+|+.+. .+++++|++.|...|+... .+++++.++ ++.|..+.. ++++|
T Consensus 80 ~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~-~~~r~~~~~~~~~~K 151 (298)
T TIGR01122 80 KNNL-------RSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVS-SWRRNAPNTIPTAAK 151 (298)
T ss_pred hcCC-------CCEEEEEEEEEccCCCCcCCCCCCCceEEEEEeccccccCcccccCCeEEEEE-EEEcCCCCCcCccch
Confidence 9864 468999999988777787653 3678899998886654321 257889887 478877766 48999
Q ss_pred cccchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEEecCCC-C----H--HHHHHHHHhc
Q 021518 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSKFWTL-F----L--ISLLYVALFS 307 (311)
Q Consensus 240 t~gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP~l~-~----~--~~vl~la~~~ 307 (311)
+.+||+.++++.++|+++|+||+|++|+ +|+|+|++++|||+++||+|+||+++ + + +.||++|...
T Consensus 152 ~~~~yl~~v~a~~~a~~~g~de~l~ld~--~g~v~E~s~sNlf~v~~~~l~TP~~~~~~L~GItR~~il~la~~~ 224 (298)
T TIGR01122 152 AGGNYLNSLLAKSEARRHGYDEAILLDV--EGYVAEGSGENIFIVKDGVLFTPPVTSSILPGITRDTVITLAKEL 224 (298)
T ss_pred hhhhhHHHHHHHHHHHHcCCCEEEEECC--CCCEEECCceEEEEEECCEEECCCCCCCcCcchHHHHHHHHHHHc
Confidence 9855999999999999999999999998 89999999999999999999999985 2 2 8888887654
No 9
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=4.9e-40 Score=309.40 Aligned_cols=208 Identities=23% Similarity=0.356 Sum_probs=178.4
Q ss_pred eEECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 021518 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (311)
Q Consensus 85 ~w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (311)
.|.||+++|.++..+++.|++|+||||||||+|+| +|+ +|++++|++||++||++|+|+.+ +.+.+.+.+.+++
T Consensus 11 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i 85 (292)
T PRK07544 11 IWMDGELVPWRDAKVHVLTHGLHYASSVFEGERAY---GGK--IFKLREHSERLRRSAELLDFEIPYSVAEIDAAKKETL 85 (292)
T ss_pred EEECCEEEEhHHCccChhhhHhhhcceeEEeeEee---CCc--ccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999 776 78999999999999999999987 8999999999999
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCcccccCCC-CcEEEEEEeecCCccc--CCCcCEEEEEeccccccCCCC-CCCCC
Q 021518 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP-EYTFLVFASPVGNYFK--EGLAPLNLYVEDEFHRATPGG-AGGVK 239 (311)
Q Consensus 164 ~~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p~~-~~~~~I~~~P~~~y~~--~g~~~v~l~v~~~~~Ra~p~g-~g~~K 239 (311)
+.++. .+.|||++++++.+.+|..+.. ...++|...|...++. .+.+++++.+++ +.|..|.. .+.+|
T Consensus 86 ~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~gv~l~~~~-~~r~~~~~~~~~~k 157 (292)
T PRK07544 86 AANGL-------TDAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRLDIAK-WRRPDPETAPSAAK 157 (292)
T ss_pred HhcCC-------CCeEEEEEEEecCCCCCcCCCCCCcEEEEEEeccccccCccccCCCEEEEEeE-EEcCCCCCcCHhhh
Confidence 99864 4689999999888777766443 4566777666554442 334688998874 77776665 46779
Q ss_pred cccchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEEecCCCCH------HHHHHHHHhc
Q 021518 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSKFWTLFL------ISLLYVALFS 307 (311)
Q Consensus 240 t~gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP~l~~~------~~vl~la~~~ 307 (311)
++|||+.+++++++|+++|+||+|++|+ +|+|+|++++|||+++||+|+||+++++ +.|+++|...
T Consensus 158 ~~~~yl~~vla~~~A~~~G~deal~ld~--~g~V~E~~~sNlf~v~~~~l~TP~~~~~L~GItR~~vl~~a~~~ 229 (292)
T PRK07544 158 AAGLYMICTISKHAAEAKGYADALMLDY--RGYVAEATGANIFFVKDGVIHTPTPDCFLDGITRQTVIELAKRR 229 (292)
T ss_pred hhcccHHHHHHHHHHHHcCCCeEEEECC--CCCEEEcCceEEEEEECCEEECCCCcccccchhHHHHHHHHHHc
Confidence 8889999999999999999999999998 8999999999999999999999998643 8888887653
No 10
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=1.5e-39 Score=308.07 Aligned_cols=212 Identities=27% Similarity=0.400 Sum_probs=183.6
Q ss_pred eEECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 021518 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (311)
Q Consensus 85 ~w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (311)
.|.||+++|.+++.|++.|++|+||||||||+|++++++|.. +|++++|++||++||+.|+|+.| +.+++.+.|.+++
T Consensus 9 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEtir~~~g~~~~~-~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i 87 (306)
T PRK06606 9 IWFNGELVPWEDAKVHVLTHALHYGTGVFEGIRAYDTPKGPA-IFRLREHTKRLFNSAKILRMEIPYSVDELMEAQREVV 87 (306)
T ss_pred EEECCEEEEhHHcccChhhhhhhhcceeEEEEEEecCCCCCe-eeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999999999999999999998776663 89999999999999999999987 7899999999999
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCcccccCC-CCcEEEEEEeecCCcccC-C-CcCEEEEEeccccccCCCC-CCCCC
Q 021518 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA-PEYTFLVFASPVGNYFKE-G-LAPLNLYVEDEFHRATPGG-AGGVK 239 (311)
Q Consensus 164 ~~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p~-~~~~~~I~~~P~~~y~~~-g-~~~v~l~v~~~~~Ra~p~g-~g~~K 239 (311)
+.++. ...|||++++++.+.+|+.+. ..+.++|++.|..+|+.. + .+++++.++ ++.|..+.. ++.+|
T Consensus 88 ~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~K 159 (306)
T PRK06606 88 RKNNL-------KSAYIRPLVFVGDEGLGVRPHGLPTDVAIAAWPWGAYLGEEALEKGIRVKVS-SWTRHAPNSIPTRAK 159 (306)
T ss_pred HhcCC-------CCEEEEEEEEecCCccCcCCCCCCceEEEEEeccccccCcccccCCeEEEEe-eEecCCCCCcCcchh
Confidence 99864 478999999988877777654 357888888887665432 2 257889887 467777665 57899
Q ss_pred cccchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEEecCCCC-H------HHHHHHHHhc
Q 021518 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSKFWTLF-L------ISLLYVALFS 307 (311)
Q Consensus 240 t~gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP~l~~-~------~~vl~la~~~ 307 (311)
+.+||+.++++.++|+++|+||+|++|+ +|+|+|++++|||+++||+|+||+++. + +.|+++|...
T Consensus 160 ~~~nyl~~vla~~ea~~~G~de~l~l~~--~g~v~E~~~sNlf~v~~~~l~TP~~~~giL~GitR~~vl~~~~~~ 232 (306)
T PRK06606 160 ASGNYLNSILAKTEARRNGYDEALLLDV--EGYVSEGSGENIFIVRDGVLYTPPLTSSILEGITRDTVITLAKDL 232 (306)
T ss_pred hhhccHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCceEEEEEECCEEECCCCcCCcCCCHHHHHHHHHHHHc
Confidence 8679999999999999999999999998 899999999999999999999999853 2 8888887643
No 11
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=100.00 E-value=3.5e-39 Score=302.02 Aligned_cols=207 Identities=45% Similarity=0.722 Sum_probs=179.9
Q ss_pred ccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCce
Q 021518 98 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGS 177 (311)
Q Consensus 98 ~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~~~~wvP~~~~~~ 177 (311)
.+++.|++|+||||||||+|+|+..||+.++|++++|++||.+||+.|+|+.++.+++.+.+.++++.|+.|+|.....+
T Consensus 1 ~i~~~drg~~yGdgvFEtir~~~~~~g~g~~~~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~~i~~~~~~~~~~~~~~ 80 (279)
T cd01557 1 SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDADWVPYGGGAS 80 (279)
T ss_pred CcCccccHhhcChhheeeEEEEecCCCCEeEECHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCC
Confidence 47899999999999999999997555655689999999999999999999955999999999999999999987766668
Q ss_pred EEEEEEEEecCCcccccCCCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcccchHHHHHHHHHHHhC
Q 021518 178 LYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNR 257 (311)
Q Consensus 178 lyIRp~~~g~~~~lgv~p~~~~~~~I~~~P~~~y~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~eA~~~ 257 (311)
.|||++++++.+.+|..+..+++++|++.|..+++....+++++.++ ++.|..|...+.+|+.+||+.+++++++|+++
T Consensus 81 ~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~~ 159 (279)
T cd01557 81 LYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEKGVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAEK 159 (279)
T ss_pred EEEEEEEEeccccCCcCCCCccEEEEEEEEccccccCCCCCeEEEEe-eEEcCCCCCCcccchhhccHHHHHHHHHHHHC
Confidence 99999999887777877556678999999887665433467888887 57888886688899856999999999999999
Q ss_pred CCCEEEEEcCCCC-CeEEEecceeEEEEeCCeEEecCCC-CH------HHHHHHHHhc
Q 021518 258 GFSDVLYLDSVNK-KNLEEVSSCNIFILKVLLNSKFWTL-FL------ISLLYVALFS 307 (311)
Q Consensus 258 G~dd~L~Ld~~~~-g~V~E~~~sNiF~vk~~~l~TP~l~-~~------~~vl~la~~~ 307 (311)
|+||+|++|+ + |+|+|++++|||++++++|+||+++ ++ +.|+++|...
T Consensus 160 g~de~l~ld~--~~g~v~E~~~sNlf~v~~~~l~TP~~~~~~L~Gitr~~v~~~~~~~ 215 (279)
T cd01557 160 GYDQALWLDG--AHGYVAEVGTMNIFFVKDGELITPPLDGSILPGITRDSILELARDL 215 (279)
T ss_pred CCCEEEEEcC--CCCEEEEeCcEEEEEEECCEEEcCCCcCCCCCchHHHHHHHHHHHc
Confidence 9999999998 6 9999999999999999999999996 22 8888887653
No 12
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.8e-39 Score=303.41 Aligned_cols=206 Identities=35% Similarity=0.492 Sum_probs=178.2
Q ss_pred eEECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 021518 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (311)
Q Consensus 85 ~w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (311)
.|.||+++|.+++.+++.|+++|||++||||+|+| +|+ +||+++|++||++||++|+||.| +.+++.....+++
T Consensus 4 ~~~~g~~~~~~~~~~~~~~~~~~~g~~vFE~~r~~---~g~--~~~l~~H~~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~ 78 (284)
T COG0115 4 IWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAY---NGK--LFRLDEHLARLKRSAKRLGLPRPESEEEIELLIQLLL 78 (284)
T ss_pred EeECCEEccCcccccCcccceeccccceeEEEEEe---CCc--ccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999 564 89999999999999999999998 6666666666666
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCcccccCCCCcEEEEEEeecCCcccCCC--cCEEEEEeccccccCCCCCC-CCCc
Q 021518 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGL--APLNLYVEDEFHRATPGGAG-GVKA 240 (311)
Q Consensus 164 ~~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p~~~~~~~I~~~P~~~y~~~g~--~~v~l~v~~~~~Ra~p~g~g-~~Kt 240 (311)
+.++ |.+ .+|+||+++++++.+|+.+..++.+.|+++|+++|++.+. +++.+.+++ ..|..|.+++ .+|+
T Consensus 79 ~~~~-~~~-----~~y~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~k~ 151 (284)
T COG0115 79 AKNN-LVP-----GLYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLKGGRLEKGVVLVISS-PVRRAPPGPGAAKKT 151 (284)
T ss_pred HhhC-CCC-----ceEEEEEEEeecCCCCcCCCCccEEEEEEEecccccCcccccCCeEEEEee-hhhccCCCcchhhhh
Confidence 6654 333 3999999999999999988778999999999999998763 677777763 4566665544 4666
Q ss_pred ccchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEe-CCeEEecCCCC-----H--HHHHHHHH
Q 021518 241 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK-VLLNSKFWTLF-----L--ISLLYVAL 305 (311)
Q Consensus 241 ~gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk-~~~l~TP~l~~-----~--~~vl~la~ 305 (311)
+||+++++++++|+++|++|+|++|. +|+|+|++++|||+++ ||+++||++++ + ++||++|.
T Consensus 152 -~~y~~~~~a~~~A~~~G~~eal~~~~--~G~V~Eg~~sNvf~v~~dg~~~TP~~~~~iL~GitR~~li~la~ 221 (284)
T COG0115 152 -GNYLSSVLAKREAKAAGADEALLLDE--DGYVTEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAK 221 (284)
T ss_pred -cccHHHHHHHHHHHHCCCCEEEEecC--CCeEEEcCcceEEEEEECCEEECCCCCCCccccHHHHHHHHHHH
Confidence 59999999999999999999999998 8999999999999999 88999999953 2 88999987
No 13
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=4.7e-39 Score=303.88 Aligned_cols=207 Identities=23% Similarity=0.308 Sum_probs=177.6
Q ss_pred eEECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 021518 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (311)
Q Consensus 85 ~w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (311)
.|.||+++|.++..|++.|++|+||||||||||++ +|+ +|++++|++||++||++|+|+.| +.+++.+.+.+++
T Consensus 6 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i 80 (299)
T PRK12479 6 IYMNGEFVEKEKAVVSVYDHGFLYGDGVFEGIRSY---GGN--VFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQTL 80 (299)
T ss_pred EEECCEEeEHHHCccccccchhheeeeEEEEEEEE---CCE--ecCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 776 78999999999999999999987 7999999999999
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCcccccCC--CCcEEEEEEeecCCcccCC-CcCEEEEEeccccccCCCCC-CCCC
Q 021518 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGA-GGVK 239 (311)
Q Consensus 164 ~~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p~--~~~~~~I~~~P~~~y~~~g-~~~v~l~v~~~~~Ra~p~g~-g~~K 239 (311)
+.++. ...|||++++++.+.+|+.+. .++.++|++.|...+.... .+++++.++ .+.|..|..+ ..+|
T Consensus 81 ~~~~~-------~~~~ir~~v~rg~g~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~-~~~r~~~~~~~~~~K 152 (299)
T PRK12479 81 QKNEY-------ADAYIRLIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLSVVSV-ASRRNTPDALDPRIK 152 (299)
T ss_pred HHcCC-------CCeEEEEEEEecCCCCCCCCccCCCceEEEEEEEcccCChhHHhCCeEEEEE-eEeccCCCccCccch
Confidence 98764 468999999988777777654 3568888888865332111 145777776 4678777655 6899
Q ss_pred cccchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEEecCCCC-----H--HHHHHHHHhc
Q 021518 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSKFWTLF-----L--ISLLYVALFS 307 (311)
Q Consensus 240 t~gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP~l~~-----~--~~vl~la~~~ 307 (311)
+. ||+.++++.++|+++|+||+||+|+ +|+|+|++++|||+++|++|+||+++. + +.|++++...
T Consensus 153 ~~-nyl~~vla~~ea~~~g~de~l~ld~--~g~v~E~s~sNlf~v~~~~l~TP~l~~giL~GItR~~il~~~~~~ 224 (299)
T PRK12479 153 SM-NYLNNVLVKIEAAQAGVLEALMLNQ--QGYVCEGSGDNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERL 224 (299)
T ss_pred hh-hhHHHHHHHHHHHHcCCCEEEEEcC--CCcEEECCceEEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHc
Confidence 97 9999999999999999999999998 899999999999999999999999852 2 8888887654
No 14
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1.4e-38 Score=298.66 Aligned_cols=207 Identities=26% Similarity=0.344 Sum_probs=176.4
Q ss_pred eEECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 021518 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (311)
Q Consensus 85 ~w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (311)
.|.||++++..+..+++.|++|+|||||||||+++ +|+ +|++++|++||.+||++|+|+.| +.+.+.+.+.+++
T Consensus 5 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~~v~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i 79 (288)
T PRK08320 5 IYLNGEFVPKEEAKVSVFDHGFLYGDGVFEGIRAY---NGR--VFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLETL 79 (288)
T ss_pred EEECCEEEEHHHCcccccchhhhhcceEEEEEEEE---CCE--eecHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 776 78999999999999999999877 7999999999999
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCcccccCC--CCcEEEEEEeecCCcccC-CCcCEEEEEeccccccCCCCC-CCCC
Q 021518 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKE-GLAPLNLYVEDEFHRATPGGA-GGVK 239 (311)
Q Consensus 164 ~~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p~--~~~~~~I~~~P~~~y~~~-g~~~v~l~v~~~~~Ra~p~g~-g~~K 239 (311)
+.++. .+.+||++++++.+.+|+.+. .++.+++++.|..++... -.+++++.+.+ +.|..+..+ ..+|
T Consensus 80 ~~~~~-------~~~~iri~v~rg~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~r~~~~~~~~~~K 151 (288)
T PRK08320 80 RKNNL-------RDAYIRLVVSRGVGDLGLDPRKCPKPTVVCIAEPIGLYPGELYEKGLKVITVS-TRRNRPDALSPQVK 151 (288)
T ss_pred HhcCC-------CCEEEEEEEEECCCcCCCCcccCCCceEEEEEEEcCcCChhHHhcCeEEEEEe-eeccCCCCcCccch
Confidence 99864 568999999988777787654 356778888876543321 01466776663 567766554 6899
Q ss_pred cccchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEEecCCCC-----H--HHHHHHHHhc
Q 021518 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSKFWTLF-----L--ISLLYVALFS 307 (311)
Q Consensus 240 t~gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP~l~~-----~--~~vl~la~~~ 307 (311)
+. ||+.++++.++|+++|+||+|++|+ +|+|+|++++|||+++||+++||+++. + +.|++++...
T Consensus 152 ~~-nyl~~v~a~~~A~~~g~de~L~ld~--~g~v~E~s~sNlf~~~~~~l~TP~~~~~~L~GitR~~ll~~~~~~ 223 (288)
T PRK08320 152 SL-NYLNNILAKIEANLAGVDEAIMLND--EGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIAKEL 223 (288)
T ss_pred hh-hhHHHHHHHHHHHHcCCCEEEEECC--CCeEEEcCcEEEEEEECCEEECCCCcCCCCcCHHHHHHHHHHHHc
Confidence 97 9999999999999999999999998 899999999999999999999999842 2 8888887653
No 15
>PRK13356 aminotransferase; Provisional
Probab=100.00 E-value=3.3e-38 Score=296.15 Aligned_cols=206 Identities=20% Similarity=0.257 Sum_probs=170.3
Q ss_pred eEECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 021518 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (311)
Q Consensus 85 ~w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (311)
.|.||++++.+...+++.|++|+||||||||+|+| +|+ +|++++|++||.+||++|+|+.+ +.+++.+.+.+++
T Consensus 9 ~~~nG~~~~~~~~~i~~~drg~~yGdgvFEtir~~---~g~--~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~i 83 (286)
T PRK13356 9 TFFDGEWHEGNVPIMGPADHAAWLGSTVFDGARAF---EGV--TPDLDLHCARVNRSAEALGLKPTVSAEEIEALAREGL 83 (286)
T ss_pred EEECCEEcchhhcccccccchhhhcceeEEEEEEe---cCC--CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 666 68999999999999999999866 8999999999999
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCcc-cccCC-CCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCC-CCCCCc
Q 021518 164 LANKRWVPPPGKGSLYIRPLLVGSGPIL-GLAPA-PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGG-AGGVKA 240 (311)
Q Consensus 164 ~~~~~wvP~~~~~~lyIRp~~~g~~~~l-gv~p~-~~~~~~I~~~P~~~y~~~g~~~v~l~v~~~~~Ra~p~g-~g~~Kt 240 (311)
+.+.. ...+|||++++++.+.. |..+. ..+.+.+...+...... +++++.++ ++.|..+.. .+++|+
T Consensus 84 ~~~~~------~~~~~ir~~v~rg~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~gv~l~~~-~~~r~~~~~~~~~~K~ 153 (286)
T PRK13356 84 KRFDP------DTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEP---TGFSLTLS-PFRRPTLEMAPTDAKA 153 (286)
T ss_pred HHcCC------CCcEEEEEEEEeccCcccCcCCCcCCceEEEEEEccCCCCC---CcEEEEEe-eeecCCCCCCCcccee
Confidence 98853 24689999998775433 34333 23444555554322112 56888887 477876654 578998
Q ss_pred ccchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEEecCCC-----CH--HHHHHHHHhc
Q 021518 241 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSKFWTL-----FL--ISLLYVALFS 307 (311)
Q Consensus 241 ~gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP~l~-----~~--~~vl~la~~~ 307 (311)
++||+.++++.++|+++|+||+||+|. +|+|+|++++|||+++||+|+||+++ |+ +.|+++|...
T Consensus 154 ~~nyl~~vla~~ea~~~g~deal~ld~--~G~v~E~~~sNlf~v~~~~l~TP~~~~~~L~GItR~~vi~~a~~~ 225 (286)
T PRK13356 154 GCLYPNNARALREARSRGFDNALVLDM--LGNVAETATSNVFMVKDGVVFTPVPNGTFLNGITRQRVIALLRED 225 (286)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCceEEEEEECCEEEcCCCCCCcccCHHHHHHHHHHHHc
Confidence 779999999999999999999999998 79999999999999999999999985 23 8888888654
No 16
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=100.00 E-value=1.5e-37 Score=288.71 Aligned_cols=203 Identities=19% Similarity=0.214 Sum_probs=166.1
Q ss_pred EECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHH
Q 021518 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164 (311)
Q Consensus 86 w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv~ 164 (311)
|.||+++|..++.+++.|++|+|||++|||||++ +|+ +|++++|++||.+||++|+|+.+ +.+++.+.+.++++
T Consensus 1 ~~nG~~~~~~~~~i~~~d~g~~~G~gvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~ 75 (270)
T cd01558 1 YLNGEYVPREEAKVSVFDRGFLFGDGVYEVIRVY---NGK--PFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVA 75 (270)
T ss_pred CcCCeEeEHHHCccccccchhcccceEEEEEEEE---CCE--EecHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999 776 79999999999999999999976 89999999999999
Q ss_pred HcCCcCCCCCCceEEEEEEEEecCCcccccC--CCCcEEEEEEeecCCcccC-CCcCEEEEEeccccccCCCCCCCCCcc
Q 021518 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAP--APEYTFLVFASPVGNYFKE-GLAPLNLYVEDEFHRATPGGAGGVKAI 241 (311)
Q Consensus 165 ~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p--~~~~~~~I~~~P~~~y~~~-g~~~v~l~v~~~~~Ra~p~g~g~~Kt~ 241 (311)
.++. ..+.+|+|+ +++.+..|..+ ...+.++|++.|..+++.. -.+++++.+++ ..|. ...++|+.
T Consensus 76 ~~~~-----~~~~~~~~~--t~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~~-~~~~---~~~~~K~~ 144 (270)
T cd01558 76 KNEG-----GEGDVYIQV--TRGVGPRGHDFPKCVKPTVVIITQPLPLPPAELLEKGVRVITVP-DIRW---LRCDIKSL 144 (270)
T ss_pred HcCC-----CCceEEEEE--EeCCCccCCCCCCCCCCEEEEEEEecCCCChhhhhcCeEEEEec-cccc---CCCCchhh
Confidence 9853 234666765 44444445443 2356788888887532211 12567887764 4443 34689997
Q ss_pred cchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEEecCCC-C----H--HHHHHHHHhc
Q 021518 242 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSKFWTL-F----L--ISLLYVALFS 307 (311)
Q Consensus 242 gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP~l~-~----~--~~vl~la~~~ 307 (311)
||+.++++.++|+++|+||+|++|+ +|+|+|++++|||+++||+|+||+++ + + +.|+++|...
T Consensus 145 -ny~~~~~a~~~a~~~g~de~l~ld~--~g~v~E~~~sNif~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~ 214 (270)
T cd01558 145 -NLLNNVLAKQEAKEAGADEAILLDA--DGLVTEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKEL 214 (270)
T ss_pred -ccHHHHHHHHHHHHcCCCEEEEEcC--CCEEEEcCcEEEEEEECCEEECCCCcCCCCCChHHHHHHHHHHHc
Confidence 9999999999999999999999998 89999999999999999999999985 2 2 8888887643
No 17
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=100.00 E-value=3.1e-37 Score=296.11 Aligned_cols=204 Identities=18% Similarity=0.151 Sum_probs=172.2
Q ss_pred eEECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 021518 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (311)
Q Consensus 85 ~w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (311)
+|.||+++|.+++.|++.|++|+||||+|||||++ +|+ +|++++|++||++||++|+|+.+ +.+++.+.|.+++
T Consensus 43 ~~~nG~~v~~~~a~i~~~Drgl~~GdGvFETirv~---~G~--~~~le~Hl~RL~~Sa~~L~i~~p~~~~~l~~~i~~~i 117 (336)
T PLN02845 43 SVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIR---DGH--LYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTV 117 (336)
T ss_pred EEECCEEccHHHCcccccccceeecceEEEEEEEE---CCE--EcCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999 787 78999999999999999999987 8999999999999
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCcccccC--CCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcc
Q 021518 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAP--APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAI 241 (311)
Q Consensus 164 ~~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p--~~~~~~~I~~~P~~~y~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~ 241 (311)
+.++. .+.+||++++++.+.+++.+ ..++++++++.|...+. ...+++++.+++ +.|. +..+.++|+.
T Consensus 118 ~~~~~-------~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~gv~l~~~~-~~~~-~~~~~~~Kt~ 187 (336)
T PLN02845 118 AASGC-------RNGSLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQ-DRPEGVKVVTSS-VPIK-PPQFATVKSV 187 (336)
T ss_pred HhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEccccccc-cccCCeEEEEee-eeec-CCccccchhh
Confidence 99864 46789988887765555543 34678888887754222 113568887764 4553 3346789997
Q ss_pred cchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEe-CCeEEecCCCCH------HHHHHHHHh
Q 021518 242 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK-VLLNSKFWTLFL------ISLLYVALF 306 (311)
Q Consensus 242 gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk-~~~l~TP~l~~~------~~vl~la~~ 306 (311)
||+.++++.++|+++|+||+|++|+ +|+|+|++++|||+++ |++|+||+++++ +.||++|..
T Consensus 188 -nyl~~vla~~eA~~~G~deaLlln~--~G~V~Egt~sNiF~v~~~~~l~TP~l~~iL~GItR~~vlela~~ 256 (336)
T PLN02845 188 -NYLPNALSQMEAEERGAFAGIWLDE--EGFVAEGPNMNVAFLTNDGELVLPPFDKILSGCTARRVLELAPR 256 (336)
T ss_pred -hhHHHHHHHHHHHHcCCCEEEEECC--CCcEEEcCcceEEEEEECCEEEeCCCCCcCccHHHHHHHHHHHh
Confidence 9999999999999999999999998 8999999999999885 999999998633 888888774
No 18
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=5.4e-37 Score=287.39 Aligned_cols=204 Identities=20% Similarity=0.206 Sum_probs=171.9
Q ss_pred eEECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 021518 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (311)
Q Consensus 85 ~w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (311)
.|.||+++|..++.+++.|++|+||+++|||||+| +|+ +|++++|++||++||+.|+|+.+ +.+.+.+.+.+++
T Consensus 2 ~~~nG~~~~~~~~~v~~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~l~~~~ 76 (283)
T PRK07650 2 IYVNGQYVEEEEARISPFDHGYLYGLGVFETFRIY---NGH--PFLLDDHYDRLNDALDTLQIEWTMTKDEVLLILKNLL 76 (283)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEE---CCE--EEcHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999 787 68899999999999999999987 7999999999999
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCcccccCC--CCcEEEEEEeecCCcc-cCCCcCEEEEEeccccccCCCCCCCCCc
Q 021518 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYF-KEGLAPLNLYVEDEFHRATPGGAGGVKA 240 (311)
Q Consensus 164 ~~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p~--~~~~~~I~~~P~~~y~-~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt 240 (311)
+.++. ...+||++++++.+.+++.+. ..+.++|+..|..+.. .....++.+ ...|..++...++|+
T Consensus 77 ~~~~~-------~~~~iRl~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Kt 145 (283)
T PRK07650 77 EKNGL-------ENAYVRFNVSAGIGEIGLQTEMYEEPTVIVYMKPLAPPGLPAEKEGVVL----KQRRNTPEGAFRLKS 145 (283)
T ss_pred HhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEEcCCCCChhhcCeEEEE----EEEecCCCCCcchhH
Confidence 98753 568999999988666666643 4578888888874322 111222322 245666777889999
Q ss_pred ccchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEEecCCCC-----H--HHHHHHHHhc
Q 021518 241 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSKFWTLF-----L--ISLLYVALFS 307 (311)
Q Consensus 241 ~gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP~l~~-----~--~~vl~la~~~ 307 (311)
+ ||+.++++.++|+++|+||+|++|. +|+|+|++++|||++++|+++||+++. + +.||++|...
T Consensus 146 ~-~y~~~v~a~~~a~~~g~de~llln~--~G~v~E~s~sNif~v~~g~l~TP~l~~g~L~GitR~~li~~~~~~ 216 (283)
T PRK07650 146 H-HYLNNILGKREIGNDPNKEGIFLTE--EGYVAEGIVSNLFWVKGDIVYTPSLETGILNGITRAFVIKVLEEL 216 (283)
T ss_pred H-hHHHHHHHHHHHHHcCCCeEEEECC--CCeEEEcCceEEEEEECCEEEcCCCcCCCcccHHHHHHHHHHHHc
Confidence 7 9999999999999999999999998 899999999999999999999999853 2 8888887544
No 19
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1.4e-36 Score=285.16 Aligned_cols=203 Identities=16% Similarity=0.166 Sum_probs=168.0
Q ss_pred eEECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 021518 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (311)
Q Consensus 85 ~w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (311)
+|.||+++|.++..|++.|++|+||||+|||+|+| +|+ +|++++|++||++||++|+|+.+ +.+++.+.|.+++
T Consensus 5 ~~~nG~~~~~~~~~i~~~drg~~yGdGvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~~ 79 (286)
T PRK06680 5 AYVNGRYVNHREARVHIEDRGFQFADGIYEVCAVR---DGK--LVDLDRHLARLFRSLGEIRIAPPMTRAELVEVLRELI 79 (286)
T ss_pred EEECCEEEEHHHCcccccccccceeeEEEEEEEEE---CCE--EechHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 787 68899999999999999999977 8999999999999
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCccccc-C--CCCcEEEEEEeecCCcccC--CCcCEEEEEeccccccCCCCCCCC
Q 021518 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLA-P--APEYTFLVFASPVGNYFKE--GLAPLNLYVEDEFHRATPGGAGGV 238 (311)
Q Consensus 164 ~~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~-p--~~~~~~~I~~~P~~~y~~~--g~~~v~l~v~~~~~Ra~p~g~g~~ 238 (311)
+.++. ...+||++++++.+..+.. + ..++.++|++.|..+|... -.+++++.+.+. .| ....++
T Consensus 80 ~~~~~-------~~~~lr~~vtrG~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~~~~~~~-~~---~~~~~~ 148 (286)
T PRK06680 80 RRNRV-------REGLVYLQVTRGVARRDHVFPAADVKPSVVVFAKSVDFARPAAAAETGIKVITVPD-NR---WKRCDI 148 (286)
T ss_pred HHcCC-------CceEEEEEEEeCCCCCCCCCCCCCCCcEEEEEEEeccccCChhHHhCCeEEEEecC-CC---CCCCCc
Confidence 99864 3457777777665444443 2 2467889999987652211 125677776532 23 234679
Q ss_pred CcccchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEE-eCCeEEecCCCC-----H--HHHHHHHHhc
Q 021518 239 KAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL-KVLLNSKFWTLF-----L--ISLLYVALFS 307 (311)
Q Consensus 239 Kt~gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~v-k~~~l~TP~l~~-----~--~~vl~la~~~ 307 (311)
|+. ||+.++++.++|+++|+||+|++| +|+|+|++++|||++ +|++|+||+++. + +.++++|...
T Consensus 149 Ks~-nyl~~vla~~eA~~~g~dd~l~ld---~g~v~E~~~sN~f~~~~~~~l~TP~~~~~iL~Gitr~~il~~a~~~ 221 (286)
T PRK06680 149 KSV-GLLPNVLAKQAAKEAGAQEAWMVD---DGFVTEGASSNAWIVTKDGKLVTRPADNFILPGITRHTLIDLAKEL 221 (286)
T ss_pred chh-ccHHHHHHHHHHHHCCCCEEEEec---CCEEEEcCcEEEEEEEECCEEEeCCCCCCCCcCHHHHHHHHHHHHc
Confidence 998 999999999999999999999998 489999999999999 999999999852 2 8888888754
No 20
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=1.4e-36 Score=286.26 Aligned_cols=206 Identities=19% Similarity=0.165 Sum_probs=169.8
Q ss_pred eEECC-----eeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 021518 85 YFEKG-----RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAV 159 (311)
Q Consensus 85 ~w~ng-----~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~~~e~~~~~i 159 (311)
+|.|| +++|.+++.|++.|++++||||+|||||++ +|+ ++++++|++||++||+.|+|+.++.+++.++|
T Consensus 9 ~~~ng~~~~~~~~~~~~a~i~~~drg~~~GdgvFEt~rv~---~g~--i~~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~~i 83 (292)
T PRK07849 9 VTLDPYGGSERVHDPSAPLLHADDLAAVRGDGVFETLLVR---DGR--PCNLEAHLERLARSAALLDLPEPDLDRWRRAV 83 (292)
T ss_pred EEECCCCccceEechHHCCccchhcchhccceEEEEEEEE---CCE--ECCHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 79999 999999999999999999999999999999 777 67889999999999999999998899999999
Q ss_pred HHHHHHcCCcCCCCCCceEEEEEEEEecCCcccccCCCCcEEEEEEeecCCcc-cCCCcCEEEEEeccc-----cccCCC
Q 021518 160 KQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF-KEGLAPLNLYVEDEF-----HRATPG 233 (311)
Q Consensus 160 ~~lv~~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p~~~~~~~I~~~P~~~y~-~~g~~~v~l~v~~~~-----~Ra~p~ 233 (311)
.++++.+.. .....+||++++++.+.. ..+.++|.+.|...+. ....+++++.+++.- .+..|.
T Consensus 84 ~~~v~~~~~-----~~~~~~iRl~v~~g~~~~-----~~~~~~i~~~p~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~p~ 153 (292)
T PRK07849 84 ELAIEEWRA-----PEDEAALRLVYSRGRESG-----GAPTAWVTVSPVPERVARARREGVSVITLDRGYPSDAAERAPW 153 (292)
T ss_pred HHHHHHhcC-----CCCCeEEEEEEeCCCCCC-----CCCeEEEEEeecCccchhhccCCeEEEEEeccccCcccccCcc
Confidence 999998631 014679998887664432 2467888888875332 112356888776321 123455
Q ss_pred CCCCCCcccchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEEecCCCC-H------HHHHHHHHh
Q 021518 234 GAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSKFWTLF-L------ISLLYVALF 306 (311)
Q Consensus 234 g~g~~Kt~gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP~l~~-~------~~vl~la~~ 306 (311)
.+.++|++ ||+.++++.++|+++|+||+|++|. +|+|+|++++|||+++|++++||+++. + +.||++|..
T Consensus 154 ~~~~~Kt~-ny~~~i~a~~~A~~~g~dd~L~ld~--~G~v~E~s~~Nif~~~~g~l~TP~~~~giL~GItR~~vie~~~~ 230 (292)
T PRK07849 154 LLAGAKTL-SYAVNMAALRYAARRGADDVIFTST--DGYVLEGPTSTVVIATDDRLLTPPPWYGILPGTTQAALFEVARE 230 (292)
T ss_pred cccccchh-hhHHHHHHHHHHHHcCCCEEEEEcC--CCcEEECCceEEEEEECCEEECCCCcCCCCccHHHHHHHHHHHH
Confidence 57889997 9999999999999999999999998 799999999999999999999999852 2 888888765
Q ss_pred cc
Q 021518 307 SH 308 (311)
Q Consensus 307 ~~ 308 (311)
.+
T Consensus 231 ~g 232 (292)
T PRK07849 231 KG 232 (292)
T ss_pred cC
Confidence 43
No 21
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=100.00 E-value=2.2e-36 Score=279.72 Aligned_cols=200 Identities=22% Similarity=0.211 Sum_probs=164.9
Q ss_pred EECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 021518 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165 (311)
Q Consensus 86 w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~ 165 (311)
|.||+. +..+++.|++|+||++||||||++ +|+ +|++++|++||.+||+.|+|+.|+.+++.+.+.++++.
T Consensus 1 ~~nG~~----~~~i~~~d~g~~~G~gvFEt~r~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~~~~~~~~ 71 (261)
T TIGR03461 1 WVNGVL----QTQISVSDRGLQYGDGCFTTAKVR---NGK--IELLDLHLERLQDAAARLGIPLPDWDALREEMAQLAAG 71 (261)
T ss_pred CcCCcc----cCccCcccccccccceeEEEEEEE---CCE--eccHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Confidence 788884 678999999999999999999999 787 78899999999999999999998899999999999987
Q ss_pred cCCcCCCCCCceEEEEEEEEecCCcccccC--CCCcEEEEEEeecCCcccCC-CcCEEEEEeccccccCCCCCCCCCccc
Q 021518 166 NKRWVPPPGKGSLYIRPLLVGSGPILGLAP--APEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 242 (311)
Q Consensus 166 ~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p--~~~~~~~I~~~P~~~y~~~g-~~~v~l~v~~~~~Ra~p~g~g~~Kt~g 242 (311)
+. ..+||+.+.++.+..|..+ ..++.++|++.|..+++... .+|+++.+++ ..+..+..+.++|+.
T Consensus 72 ~~---------~~~ir~~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~Kt~- 140 (261)
T TIGR03461 72 YS---------LGVLKVIISRGSGGRGYSPPGCSDPTRIISVSPYPAHYSAWQQQGIRLGVSP-VRLGRNPLLAGIKHL- 140 (261)
T ss_pred CC---------CeEEEEEEecCCCCCCCCCCCCCCCcEEEEeccCcccChhHhcCCEEEEEec-cccCCCCCCcCcccc-
Confidence 63 3578887876544444433 34567888888876554322 2678888874 444434457889997
Q ss_pred chHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEEecCCC-----CH--HHHHHHHHhc
Q 021518 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSKFWTL-----FL--ISLLYVALFS 307 (311)
Q Consensus 243 NY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP~l~-----~~--~~vl~la~~~ 307 (311)
||+.++++.++|+++|+||+|++|+ +|+|+|++++|||+++||+|+||+++ |+ ++||+++...
T Consensus 141 ~y~~~~~a~~~A~~~g~de~llln~--~g~v~E~s~sNif~~~~~~l~TP~~~~~~L~GItR~~il~~~~~~ 210 (261)
T TIGR03461 141 NRLEQVLIKAELENSEADEALVLDT--DGNVVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALLPAL 210 (261)
T ss_pred ccHHHHHHHHHhhhcCCCEEEEECC--CCCEEEeccEEEEEEECCEEECCCccccCcccHHHHHHHHHHHHc
Confidence 9999999999999999999999998 89999999999999999999999985 22 8888887654
No 22
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=100.00 E-value=4.7e-36 Score=280.25 Aligned_cols=203 Identities=15% Similarity=0.157 Sum_probs=162.1
Q ss_pred eEECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 021518 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (311)
Q Consensus 85 ~w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (311)
.|.||+++|.++..+++.|++|+||||||||||+| +|+ +|++++|++||++||++|+|+.+ +.+.+.+.|.+++
T Consensus 2 ~~~nG~~~~~~~~~i~~~drgl~yGdgvFEtir~~---~g~--~~~l~~H~~RL~~Sa~~l~i~~~~~~~~l~~~i~~~~ 76 (276)
T TIGR01121 2 VLWNGQLVEREEAKIDIEDRGYQFGDGVYEVIRVY---NGK--LFTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELV 76 (276)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEE---CCE--EeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999 776 78999999999999999999976 8999999999999
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCccccc-CC--CCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCc
Q 021518 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLA-PA--PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKA 240 (311)
Q Consensus 164 ~~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~-p~--~~~~~~I~~~P~~~y~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt 240 (311)
+.++. ...+||+.+.++....+.. |. ..+.++++..|....+..-.+++++.+..+ .| ....++|+
T Consensus 77 ~~~~~-------~~~~irl~~~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~-~~---~~~~~~K~ 145 (276)
T TIGR01121 77 EKNNL-------NTGHVYFQVTRGVAPRNHQFPAGTVKPVITAYTKEVPRPEENLEKGVKAITVED-IR---WLRCDIKS 145 (276)
T ss_pred HhcCC-------CceEEEEEEEcCCCCcCCCCCCCCCCcEEEEEEecccCChhHHhcCeEEEEecC-CC---ccCCCcch
Confidence 99864 3567777776553333332 22 235666777665422111124566655432 23 22467999
Q ss_pred ccchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEEecCCCC-----H--HHHHHHHHhc
Q 021518 241 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSKFWTLF-----L--ISLLYVALFS 307 (311)
Q Consensus 241 ~gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP~l~~-----~--~~vl~la~~~ 307 (311)
. ||+.++++.++|+++|+||+|+++ +|+|+|++++|||+++||+++||+++. + ++|+++|...
T Consensus 146 ~-nyl~~vla~~eA~~~g~de~l~~~---~g~v~E~~~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~a~~~ 215 (276)
T TIGR01121 146 L-NLLGNVLAKQEAHEKGAYEAILHR---GGTVTEGSSSNVYGIKDGVLYTHPANNLILNGITRMVILACAEEN 215 (276)
T ss_pred h-hhHHHHHHHHHHHHcCCCEEEEec---CCeEEecCceeEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHC
Confidence 7 999999999999999999999995 589999999999999999999999953 2 8888888654
No 23
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1e-35 Score=279.86 Aligned_cols=204 Identities=16% Similarity=0.121 Sum_probs=161.1
Q ss_pred eEECCeeeeCCC--cccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHH
Q 021518 85 YFEKGRLSRYGK--IELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQ 161 (311)
Q Consensus 85 ~w~ng~i~p~~~--~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~-~~e~~~~~i~~ 161 (311)
.|.||+++|.++ ..|++.|++|+||||||||||++ +|+ +|++++|++||.+||++|+|+.| +.+++.+.+.+
T Consensus 7 ~~~ng~~v~~~~~~~~i~~~drgl~yGdgvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~l~~~l~~ 81 (290)
T PRK12400 7 VLWNDAVIDTTKQKTYIELEERGLQFGDGVYEVIRLY---KGN--FHLLDPHITRLYRSMEEIELTLPFSKAELITLLYK 81 (290)
T ss_pred EEECCEEechHHcCceeccccchhhhcceEEEEEEEE---CCE--ecccHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 799999999984 45999999999999999999999 777 67899999999999999999987 79999999999
Q ss_pred HHHHcCCcCCCCCCceEEEEEEEEecCCcccccCC--CCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCC
Q 021518 162 TALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVK 239 (311)
Q Consensus 162 lv~~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p~--~~~~~~I~~~P~~~y~~~g~~~v~l~v~~~~~Ra~p~g~g~~K 239 (311)
+++.++. ....+||++++++.+..+..++ ..+++++++.|...+...-.+++++.+.+. . +....++|
T Consensus 82 ~~~~~~~------~~~~~iri~v~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~---~~~~~~~K 151 (290)
T PRK12400 82 LIENNNF------HEDGTIYLQVSRGVQARTHTFSYDVPPTIYAYITKKERPALWIEYGVRAISEPD-T---RWLRCDIK 151 (290)
T ss_pred HHHhcCC------CCCEEEEEEEEeCCCCCCCCCCCCCCcEEEEEEecccCchhHHhcCcEEEECCC-C---CccCCCCc
Confidence 9999852 1356788888876554444432 345666666543211111124566655421 1 22346789
Q ss_pred cccchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEEecCCCC-----H--HHHHHHHHhc
Q 021518 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSKFWTLF-----L--ISLLYVALFS 307 (311)
Q Consensus 240 t~gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP~l~~-----~--~~vl~la~~~ 307 (311)
+. ||+.+++++++|+++|+||+|++| +|+|+|++++|||+++||+|+|||++. + +.||++|...
T Consensus 152 t~-nyl~~vla~~ea~~~g~deaL~l~---~g~v~E~t~sNif~v~~~~l~TPpl~~g~L~GItR~~llela~~~ 222 (290)
T PRK12400 152 SL-NLLPNILAATKAERKGCKEALFVR---NGTVTEGSHSNFFLIKNGTLYTHPANHLILNGIIRQYVLSLAKTL 222 (290)
T ss_pred cc-ccHHHHHHHHHHHHcCCCEEEEEc---CCEEEEcCceEEEEEECCEEEeCCCCCCcCcCHHHHHHHHHHHHc
Confidence 97 999999999999999999999995 599999999999999999999999853 2 8888988643
No 24
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=100.00 E-value=1.3e-35 Score=275.72 Aligned_cols=201 Identities=20% Similarity=0.173 Sum_probs=163.4
Q ss_pred eEECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 021518 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 164 (311)
Q Consensus 85 ~w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~ 164 (311)
+|.||++ ...+++.|++|+|||++|||||++ +|+ +|++++|++||++||++|+||.++.+.+.+.+.+++.
T Consensus 2 ~~~nG~~----~~~i~~~d~g~~~GdgvFEtir~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~l~~~~~ 72 (268)
T PRK06092 2 FWINGQP----QESLSVSDRSTQYGDGCFTTARVR---DGQ--VSLLSRHLQRLQDACERLAIPLDDWAQLEQEMKQLAA 72 (268)
T ss_pred EEECCcC----cCccCccccccccccceeeEEEEE---CCe--eccHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Confidence 5889985 468999999999999999999999 787 6888999999999999999999877888888887773
Q ss_pred HcCCcCCCCCCceEEEEEEEEecCCcccccCC--CCcEEEEEEeecCCcccCC-CcCEEEEEeccccccCCCCCCCCCcc
Q 021518 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAI 241 (311)
Q Consensus 165 ~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p~--~~~~~~I~~~P~~~y~~~g-~~~v~l~v~~~~~Ra~p~g~g~~Kt~ 241 (311)
.. ...+||++++++.+..|..+. .++.++|++.|..++.... .+++++.+++ ..+..+..+.++|+.
T Consensus 73 ~~---------~~~~iri~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~ 142 (268)
T PRK06092 73 EL---------ENGVLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYSRWREQGITLALCP-TRLGRNPLLAGIKHL 142 (268)
T ss_pred hC---------CCeEEEEEEEccCCCCCCCCCCCCCCeEEEEeccCCccChhHhhCCEEEEEec-cccCCCCCccCcchh
Confidence 21 346788888877655555543 4567888888886554321 2678888875 333333346789997
Q ss_pred cchHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEEecCCC-----CH--HHHHHHHHhc
Q 021518 242 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSKFWTL-----FL--ISLLYVALFS 307 (311)
Q Consensus 242 gNY~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP~l~-----~~--~~vl~la~~~ 307 (311)
||+.++++.++|+++|+||+|++|+ +|+|+|++++|||+++||+++||+++ |+ +.||++|...
T Consensus 143 -ny~~~~~a~~~A~~~g~de~l~l~~--~g~v~E~s~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~~~~~ 212 (268)
T PRK06092 143 -NRLEQVLIRAELEQTEADEALVLDS--EGWVIECCAANLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQS 212 (268)
T ss_pred -hhHHHHHHHHHHHhcCCCEEEEECC--CCCEEEccceEEEEEECCEEECCCccccCcccHHHHHHHHHHHHc
Confidence 9999999999999999999999998 89999999999999999999999985 22 8888887654
No 25
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=100.00 E-value=1.4e-35 Score=272.83 Aligned_cols=187 Identities=25% Similarity=0.301 Sum_probs=158.5
Q ss_pred CcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCceEEEEE
Q 021518 103 SGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRP 182 (311)
Q Consensus 103 d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~~~~wvP~~~~~~lyIRp 182 (311)
|++|+|||++|||||+| +|+ +|++++|++||++||++|+|+.++.+++.+.|.++++.++. ...+||+
T Consensus 1 Drg~~~GdgvFEt~~~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~ 68 (249)
T cd01559 1 DRGFAYGDGVFETMRAL---DGR--LFLLDAHLARLERSARRLGIPEPDLPRLRAALESLLAANDI-------DEGRIRL 68 (249)
T ss_pred CCcccccceeEEEEEEE---CCE--EccHHHHHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHhCCC-------CceEEEE
Confidence 68999999999999999 776 68999999999999999999955999999999999999864 4679999
Q ss_pred EEEecCCcccccC--CCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcccchHHHHHHHHHHHhCCCC
Q 021518 183 LLVGSGPILGLAP--APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFS 260 (311)
Q Consensus 183 ~~~g~~~~lgv~p--~~~~~~~I~~~P~~~y~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~eA~~~G~d 260 (311)
+++++.+..|+.+ ..++.++|.+.|... ....+++++.+++ +.|..++.++++|+. ||+.++++.++|+++|+|
T Consensus 69 ~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~-ny~~~~~a~~~a~~~g~d 144 (249)
T cd01559 69 ILSRGPGGRGYAPSVCPGPALYVSVIPLPP--AWRQDGVRLITCP-VRLGEQPLLAGLKHL-NYLENVLAKREARDRGAD 144 (249)
T ss_pred EEecCCCCCCCCCCCCCCCEEEEEeccCCH--HHHhCCcEEEEcc-cccCCCCCCCCcchh-hhHHHHHHHHHHHhcCCC
Confidence 9987765455543 346788888888653 1123578888874 677677789999996 999999999999999999
Q ss_pred EEEEEcCCCCCeEEEecceeEEEEeCCeEEecCCCC-H------HHHHHHHHhc
Q 021518 261 DVLYLDSVNKKNLEEVSSCNIFILKVLLNSKFWTLF-L------ISLLYVALFS 307 (311)
Q Consensus 261 d~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP~l~~-~------~~vl~la~~~ 307 (311)
|+||+|+ +|+|+|++++|||++++|+++||+++. + +.|++++...
T Consensus 145 e~l~l~~--~g~v~E~~~~Nif~~~~~~~~TP~~~~g~L~Gitr~~~l~~~~~~ 196 (249)
T cd01559 145 EALFLDT--DGRVIEGTASNLFFVKDGELVTPSLDRGGLAGITRQRVIELAAAK 196 (249)
T ss_pred EEEEEcC--CCCEEEecceEEEEEECCEEECCCcccCccccHHHHHHHHHHHHc
Confidence 9999998 799999999999999999999999853 2 8888887544
No 26
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=100.00 E-value=9e-35 Score=267.24 Aligned_cols=189 Identities=37% Similarity=0.499 Sum_probs=159.8
Q ss_pred CcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHHcCCcCCCCCCceEEEE
Q 021518 103 SGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIR 181 (311)
Q Consensus 103 d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv~~~~~wvP~~~~~~lyIR 181 (311)
|++|+|||++|||||++ +|+ +|++++|++||.+||+.|+|+.+ +.+.+.+.+.++++.+.. ...+||
T Consensus 1 drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~sa~~l~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~ir 68 (256)
T cd00449 1 DRGLHYGDGVFEGLRAG---KGR--LFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAANNG-------ASLYIR 68 (256)
T ss_pred CceeeccceEEEEEEEc---CcE--EEChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------CCEEEE
Confidence 68999999999999998 777 78999999999999999999954 999999999999998653 578999
Q ss_pred EEEEecCCcccccC--CCCcEEEEEEeecCCcccCCCcCEEEEEecccccc-CCCCCCCCCcccchHHHHHHHHHHHhCC
Q 021518 182 PLLVGSGPILGLAP--APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRA-TPGGAGGVKAISNYAPVLKAISRAKNRG 258 (311)
Q Consensus 182 p~~~g~~~~lgv~p--~~~~~~~I~~~P~~~y~~~g~~~v~l~v~~~~~Ra-~p~g~g~~Kt~gNY~~~l~a~~eA~~~G 258 (311)
++++++.+.+|..+ ..++.+++++.|..++.....+|+++.+++ ..|. .+..+.++|++ ||+.++++.++|+++|
T Consensus 69 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~Kt~-~~~~~~~a~~~a~~~g 146 (256)
T cd00449 69 PLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSP-DRRRAAPGGTGDAKTG-GNLNSVLAKQEAAEAG 146 (256)
T ss_pred EEEEecccccCCCCCCCCCcEEEEEEeeccccccccCCCeEEEEee-eEEeCCCCCCccchhh-CCHHHHHHHHHHHHcC
Confidence 99998876666653 356889999988866411224678888875 3443 45568899998 9999999999999999
Q ss_pred CCEEEEEcCCCCCeEEEecceeEEEEeCCeEEecCCCC-H------HHHHHHHHhc
Q 021518 259 FSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSKFWTLF-L------ISLLYVALFS 307 (311)
Q Consensus 259 ~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP~l~~-~------~~vl~la~~~ 307 (311)
+||+|++|+ +|+|+|++++|||++++++|+||+++. + +.||++|...
T Consensus 147 ~de~llld~--~g~v~E~s~sNlf~~~~~~l~TP~~~~g~L~GitR~~vl~~~~~~ 200 (256)
T cd00449 147 ADEALLLDD--NGYVTEGSASNVFIVKDGELVTPPLDGGILPGITRDSVIELAKEL 200 (256)
T ss_pred CCEEEEECC--CCcEEEcCceEEEEEECCEEEeCCCCCCcCcchhHHHHHHHHHHc
Confidence 999999998 799999999999999999999999863 2 8888887543
No 27
>PRK09266 hypothetical protein; Provisional
Probab=100.00 E-value=5.6e-34 Score=264.79 Aligned_cols=193 Identities=18% Similarity=0.110 Sum_probs=158.9
Q ss_pred eEECCeeeeCCCcccCcCCcceeccCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 021518 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 164 (311)
Q Consensus 85 ~w~ng~i~p~~~~~l~~~d~~l~yG~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~ 164 (311)
+|.||+++|..++. .+++||||+|||||++ +|+ +|++++|++||.+||++|+++.++.+++.+.+.++++
T Consensus 5 ~~~nG~~~~~~~a~-----~~~~~GdgvFETir~~---~g~--~~~l~~Hl~RL~~sa~~l~~~~~~~~~l~~~l~~~~~ 74 (266)
T PRK09266 5 IELNGRPATAEDLA-----ALALANYGHFTSMQVR---DGR--VRGLDLHLQRLRRASRELFGAALDDDRVRAQLRAALA 74 (266)
T ss_pred EEECCEECCHHHhh-----hHhhccceEEEEEEEE---CCE--EcCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 69999999998875 4999999999999999 777 6889999999999999997765689999999999984
Q ss_pred HcCCcCCCCCCceEEEEEEEEecCCcccccCC-CCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcccc
Q 021518 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA-PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISN 243 (311)
Q Consensus 165 ~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p~-~~~~~~I~~~P~~~y~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~gN 243 (311)
. .. ...|||++++++.+.+|..+. .+++++|++.|..++. .+++++.+++ +.|.. .++|+. |
T Consensus 75 ~-~~-------~~~~ir~~v~r~~g~~~~~~~~~~~~~~i~~~~~~~~~---~~~v~l~~~~-~~r~~----~~~K~~-~ 137 (266)
T PRK09266 75 A-GP-------ADASVRVTVFAPDFDFRNPLADVAPDVLVATSPPADGP---AGPLRLQSVP-YEREL----PHIKHV-G 137 (266)
T ss_pred c-CC-------CcEEEEEEEEecCcccCCCCCCCCceEEEEEecCCcCC---CCCeEEEEEE-ecccC----CCCCCC-C
Confidence 3 22 468999999876556665332 4567888888764432 3567787764 55644 469998 9
Q ss_pred hHHHHHHHHHHHhCCCCEEEEEcCCCCCeEEEecceeEEEEeCCeEEecCCCCH-----HHHHHHHHh
Q 021518 244 YAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKVLLNSKFWTLFL-----ISLLYVALF 306 (311)
Q Consensus 244 Y~~~l~a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNiF~vk~~~l~TP~l~~~-----~~vl~la~~ 306 (311)
|..+++++++|+++|+||+|++|. +|+|+|++++|||+++||+|+||+...+ +.|++++..
T Consensus 138 ~l~~vla~~~a~~~g~de~l~ln~--~g~v~E~~~sNlf~v~~~~l~TP~~~~L~GItR~~ll~~~~~ 203 (266)
T PRK09266 138 TFGQLHLRRLAQRAGFDDALFVDP--DGRVSEGATWNLGFWDGGAVVWPQAPALPGVTMALLQRGLER 203 (266)
T ss_pred cHHHHHHHHHHHHcCCCeEEEEcC--CCcEEEcCceEEEEEECCEEECCCCCccchHHHHHHHHHHHH
Confidence 999999999999999999999998 8999999999999999999999997432 777787753
No 28
>PRK07546 hypothetical protein; Provisional
Probab=99.94 E-value=1.5e-25 Score=201.57 Aligned_cols=156 Identities=15% Similarity=0.095 Sum_probs=123.8
Q ss_pred CeEEEEEEEE-EcCCCeEEeeChHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCceEEEEEEEEecC
Q 021518 110 QGLFEGMKAY-RKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSG 188 (311)
Q Consensus 110 ~~vFEglkay-~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~~~~wvP~~~~~~lyIRp~~~g~~ 188 (311)
.++||||+++ .| + ++++++|++||.+||+.|++|.+ .+.+.+.+.++++.+. +.++||.++.+++
T Consensus 4 ~~lfETi~~~~~G---~--~~~l~~Hl~RL~~sa~~l~~~~~-~~~l~~~l~~~~~~~~--------~~~~vrl~~~~~g 69 (209)
T PRK07546 4 FELIETLRWEPGA---G--FPRLDRHLARLERSARALGFPCD-PAAVRAKLAEAVAGAQ--------GPLRLRLTLARDG 69 (209)
T ss_pred ccEEEEEEEeCCC---C--cccHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhhccC--------CCeEEEEEEcCCC
Confidence 4799999987 44 4 78899999999999999999984 6788899998887632 4578997766442
Q ss_pred CcccccCCCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcccchHHHHHHHHHHHhCCCCEEEEEcCC
Q 021518 189 PILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSV 268 (311)
Q Consensus 189 ~~lgv~p~~~~~~~I~~~P~~~y~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~eA~~~G~dd~L~Ld~~ 268 (311)
.+.+...|..+.... .+.++.+.+ ..+..+..+..+||. ||+.++++.++|+++|+||+|++|+
T Consensus 70 -----------~~~i~~~p~~~~~~~--~~~~l~~~~-~~~~~~~~~~~~Kt~-nr~~~v~a~~~a~~~g~de~l~l~~- 133 (209)
T PRK07546 70 -----------RLTVETAPLPPLPPD--TVWRVAIAR-TRLDSADPLLRYKTT-RRAAYDAARAELPPAEADEVILLNE- 133 (209)
T ss_pred -----------CEEEEEecCCCCCCC--CcEEEEEcC-cccCCCCcchhcccC-ChHHHHHHHHHHhhCCCCEEEEECC-
Confidence 245666666432211 345666653 345444456789997 9999999999999999999999998
Q ss_pred CCCeEEEecceeEEEEeCCeEE-ecCCCC
Q 021518 269 NKKNLEEVSSCNIFILKVLLNS-KFWTLF 296 (311)
Q Consensus 269 ~~g~V~E~~~sNiF~vk~~~l~-TP~l~~ 296 (311)
+|+|+|++++|||++++|+++ ||+++.
T Consensus 134 -~G~v~E~s~~Ni~~~~~~~~~~TP~~~~ 161 (209)
T PRK07546 134 -RGEVCEGTITNVFLDRGGGMLTTPPLSC 161 (209)
T ss_pred -CCcEEEcCceeEEEEECCEEEECCCCcC
Confidence 899999999999999999999 999853
No 29
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=99.91 E-value=2.4e-23 Score=188.06 Aligned_cols=162 Identities=25% Similarity=0.234 Sum_probs=118.9
Q ss_pred eChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHHcCCcCCCCCCceEEEEEEEEecCCcccccCCCCcEEEEEEee
Q 021518 129 FRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 207 (311)
Q Consensus 129 Frld~Hl~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv~~~~~wvP~~~~~~lyIRp~~~g~~~~lgv~p~~~~~~~I~~~P 207 (311)
|++++|++||.+||+.+ +..+ +.+.+.+.+.++++.+.. .+..|||++++++++..+..+............
T Consensus 1 f~l~~Hl~Rl~~S~~~l-~~~~~~~~~l~~~i~~~~~~~~~------~~~~~ir~~v~~g~~~~~~~~~~~~~~~~~~~~ 73 (231)
T PF01063_consen 1 FFLDEHLERLRRSARAL-IGLPFSREELREIIQELLEANPD------QGEGYIRITVTRGGGPLGGSPPENSAPPPFSIA 73 (231)
T ss_dssp ETHHHHHHHHHHHHHHT-TTHSSHHHHHHHHHHHHHHHTTS------SSSEEEEEEEEETSSSSSSSECSEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHcCC------CCCcEEEEEEEcCCCCcCccCcccccccccccc
Confidence 78999999999999999 5544 889999999999998861 255699999999887777765543332222111
Q ss_pred cCCcccCCCcCEEEEEeccccccCCC-----CCCCCCcccchHHHHH-HHHHHHhCCCCEEEEEcCCCCCeEEEecceeE
Q 021518 208 VGNYFKEGLAPLNLYVEDEFHRATPG-----GAGGVKAISNYAPVLK-AISRAKNRGFSDVLYLDSVNKKNLEEVSSCNI 281 (311)
Q Consensus 208 ~~~y~~~g~~~v~l~v~~~~~Ra~p~-----g~g~~Kt~gNY~~~l~-a~~eA~~~G~dd~L~Ld~~~~g~V~E~~~sNi 281 (311)
..... +..........++.+. .++++|++ ||..+.+ +.++|+++|+||+|++|. +|+|+|++++||
T Consensus 74 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Kt~-~~~~~~~~~~~~a~~~g~de~ll~d~--~G~v~E~~~sNi 145 (231)
T PF01063_consen 74 PPRRP-----PPPLVGSVGVRRASPPLPRPNPLPRHKTT-NRLANVLAALRAAREKGADEALLLDE--DGNVTEGSTSNI 145 (231)
T ss_dssp TCHHH-----HEEEEEECSEECETTTSE-TTTSTTS-BS-HHHHHHHHHHHHHHHTTSSEEEEEET--TSBEEEESSSEE
T ss_pred ccccC-----CcceeeeeeEEeccccccccCCCCCeeEC-CcchhhHHHHHHHHhcCcchhheecC--CCCcCCCCCccc
Confidence 11111 1111111122233222 37899998 9999988 777777999999999998 899999999999
Q ss_pred EEEeCCeEEecCCCC-H------HHHHHHHH
Q 021518 282 FILKVLLNSKFWTLF-L------ISLLYVAL 305 (311)
Q Consensus 282 F~vk~~~l~TP~l~~-~------~~vl~la~ 305 (311)
|+++||+++||+++. + +.+++++.
T Consensus 146 f~~~~~~~~TP~~~~giL~Gitr~~ll~~~~ 176 (231)
T PF01063_consen 146 FFVKDGTLYTPPLDSGILPGITRQLLLELAK 176 (231)
T ss_dssp EEEETTEEEEESGSSSSB--HHHHHHHHHHH
T ss_pred ccccCCEEEcCChhhhhccHHHHHHHHHHHH
Confidence 999999999999864 2 77777776
No 30
>PRK07101 hypothetical protein; Provisional
Probab=99.83 E-value=2.6e-19 Score=158.91 Aligned_cols=142 Identities=12% Similarity=0.062 Sum_probs=101.0
Q ss_pred CeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCC-C-CHHHHHHHHHHHHHHcCCcCCCCCCceEEEEEEEEec
Q 021518 110 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPS-P-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGS 187 (311)
Q Consensus 110 ~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~-~-~~e~~~~~i~~lv~~~~~wvP~~~~~~lyIRp~~~g~ 187 (311)
.++||||+++ +|+ ++++++|++||.+||+.+++.. + +.+++.+.+.++ . ++..++|.++ +.
T Consensus 3 ~~l~ETir~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~----~-------~~~~r~rl~~-~~ 65 (187)
T PRK07101 3 FPLFETIAIE---DGE--IQNLSYHQQRYERTLAEFYGKEAPFDLAEIIQPPTEL----Q-------EGLVRCRIDY-NA 65 (187)
T ss_pred CcceEEEeee---CCe--eccHHHHHHHHHHHHHHHcccCCcccHHHHhhchhhh----c-------CCCEEEEEEe-cC
Confidence 4699999999 776 7889999999999999998855 4 777777777554 1 2457888655 33
Q ss_pred CCcccccCCCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcccchHHHHHHHHHHHhCCCCEEEEEcC
Q 021518 188 GPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDS 267 (311)
Q Consensus 188 ~~~lgv~p~~~~~~~I~~~P~~~y~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~eA~~~G~dd~L~Ld~ 267 (311)
+ .+++ ...|..+.. .+++++..+++ ..-++|+. ||. .+....|++.|+||+|++|
T Consensus 66 g-~~~~----------~~~~~~~~~---~~~~~~~~~~~-------~~~~~Kt~-~r~--~~~~~~a~~~g~de~l~~~- 120 (187)
T PRK07101 66 E-IYQV----------QYFPYQRRP---IRSFQPVYCDD-------IDYSLKYT-DRS--ALNELFAQKGECDEIIIIK- 120 (187)
T ss_pred C-cEEE----------EEEcCCCCC---cCceEEEecCC-------cccccccC-CHH--HHHHHHHHhCCCCEEEEEc-
Confidence 2 2222 222322111 23455544332 12378997 663 3455566778999999997
Q ss_pred CCCCeEEEecceeEEEEeCCeEEecCCC
Q 021518 268 VNKKNLEEVSSCNIFILKVLLNSKFWTL 295 (311)
Q Consensus 268 ~~~g~V~E~~~sNiF~vk~~~l~TP~l~ 295 (311)
+|+|+|++++|||+++||+|+||+..
T Consensus 121 --~G~v~E~~~sNi~~~~~~~~~TP~~~ 146 (187)
T PRK07101 121 --NGLVTDTSIGNLAFFDGKQWFTPKKP 146 (187)
T ss_pred --CCEEEEccceEEEEEECCEEEcCCCC
Confidence 59999999999999999999999963
No 31
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.43 E-value=41 Score=28.19 Aligned_cols=46 Identities=15% Similarity=0.295 Sum_probs=37.3
Q ss_pred HHHHHhhcCCCCC-CHHHHHHHHHHHHHHcCCcCCCCCCceEEEEEEEEec
Q 021518 138 LQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGS 187 (311)
Q Consensus 138 L~~Sa~~L~mp~~-~~e~~~~~i~~lv~~~~~wvP~~~~~~lyIRp~~~g~ 187 (311)
|+.++..|++..+ +.+++.+--..|.+.|.. ..||++||.-=+++.
T Consensus 58 lqEa~qILnV~~~ln~eei~k~yehLFevNdk----skGGSFYLQSKVfRA 104 (132)
T KOG3442|consen 58 LQEAQQILNVKEPLNREEIEKRYEHLFEVNDK----SKGGSFYLQSKVFRA 104 (132)
T ss_pred HHHHhhHhCCCCCCCHHHHHHHHHHHHhccCc----ccCcceeehHHHHHH
Confidence 6788999999987 999999999999999875 246899997545543
No 32
>COG5475 Uncharacterized small protein [Function unknown]
Probab=31.83 E-value=43 Score=24.18 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=17.8
Q ss_pred cCCceeEEEeecc------eEECCeeeeCC
Q 021518 72 PADYMYTMKCSND------YFEKGRLSRYG 95 (311)
Q Consensus 72 ~td~m~~~~~~~~------~w~ng~i~p~~ 95 (311)
-+|.|++++|-+| .+...+++|+.
T Consensus 26 ss~Gmy~C~Wf~g~g~~~~~F~ed~Lvp~~ 55 (60)
T COG5475 26 SSDGMYECRWFDGYGVKREAFHEDELVPGE 55 (60)
T ss_pred ccCCeEEEEEecCCCcccccccccceeccc
Confidence 3579999999876 46677777754
No 33
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=26.98 E-value=44 Score=28.02 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=28.5
Q ss_pred HHHHHHhhcCCCCC-CHHHHHHHHHHHHHHcCCcCCCCCCceEEEE
Q 021518 137 RLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIR 181 (311)
Q Consensus 137 RL~~Sa~~L~mp~~-~~e~~~~~i~~lv~~~~~wvP~~~~~~lyIR 181 (311)
=+..++..|+++.. +.|++.+.-..|.+.|.. ..|||.||.
T Consensus 56 tl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~----~kGGSfYLQ 97 (127)
T PF03656_consen 56 TLDEARQILNVKEELSREEIQKRYKHLFKANDP----SKGGSFYLQ 97 (127)
T ss_dssp -HHHHHHHHT--G--SHHHHHHHHHHHHHHT-C----CCTS-HHHH
T ss_pred CHHHHHHHcCCCCccCHHHHHHHHHHHHhccCC----CcCCCHHHH
Confidence 34678889999985 999999999999999973 245787763
No 34
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.05 E-value=46 Score=32.87 Aligned_cols=63 Identities=24% Similarity=0.335 Sum_probs=44.8
Q ss_pred ccCcCCcceec-cCeEEEEEEEEEcCCCeEEeeChHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCc
Q 021518 98 ELSPSSGVLNY-GQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKG 176 (311)
Q Consensus 98 ~l~~~d~~l~y-G~~vFEglkay~~~dG~i~lFrld~Hl~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~~~~wvP~~~~~ 176 (311)
.++-.+.++.| |.++||+..+--|. |.-+.| +.+|-|..+.+.+.+.+++. +. .
T Consensus 200 Nlpt~~sa~lYpg~~l~EgtnlSeGR-GTt~PF-------------e~iGAP~id~~~la~~ln~~----~l-------~ 254 (365)
T PF07075_consen 200 NLPTLESALLYPGTCLFEGTNLSEGR-GTTRPF-------------EIIGAPWIDPERLAAELNAL----KL-------P 254 (365)
T ss_pred CCCChhHHhhccceeEeccccccccc-CCCccc-------------eeeCCCCCCHHHHHHHHHhc----cC-------C
Confidence 46667888888 89999998887553 666677 67898888877777666542 11 2
Q ss_pred eEEEEEEEE
Q 021518 177 SLYIRPLLV 185 (311)
Q Consensus 177 ~lyIRp~~~ 185 (311)
.++.||+.+
T Consensus 255 Gv~frp~~f 263 (365)
T PF07075_consen 255 GVRFRPVSF 263 (365)
T ss_pred CeeEeeeee
Confidence 467788776
No 35
>PRK13740 conjugal transfer protein TraY; Provisional
Probab=25.52 E-value=47 Score=24.98 Aligned_cols=10 Identities=20% Similarity=0.169 Sum_probs=6.7
Q ss_pred eeChHhHHHH
Q 021518 128 LFRPDQNAIR 137 (311)
Q Consensus 128 lFrld~Hl~R 137 (311)
.+|+.+|+.|
T Consensus 42 ~lRL~DHL~r 51 (70)
T PRK13740 42 QIRLRDHLKR 51 (70)
T ss_pred HHHHHHHHHh
Confidence 3567777777
Done!