RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021518
(311 letters)
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 350 bits (900), Expect = e-121
Identities = 91/251 (36%), Positives = 150/251 (59%), Gaps = 2/251 (0%)
Query: 35 YTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSR 93
+ + L+ + ++ N GFG D+M ++ + D + ++
Sbjct: 2 HHHHNSGPLEFTVSANTNPATDAVRESILANPGFGKYYTDHMVSIDYTVDEGWHNAQVIP 61
Query: 94 YGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSID 153
YG I+L PS+ VL+YGQ +FEG+KAYR DG +V FRP+ NA RLQ+ A R+ +P +
Sbjct: 62 YGPIQLDPSAIVLHYGQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEE 121
Query: 154 QFIDAVKQTALANKRWVPP-PGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF 212
FI++++Q +++WVPP G+ SLY+RP ++ + P LG+ P+ EY +L+ ASP G YF
Sbjct: 122 VFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYF 181
Query: 213 KEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKN 272
K G+ P+++++ E+ RA+PGG G K NYA L A ++A G V++LD++ ++
Sbjct: 182 KGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRY 241
Query: 273 LEEVSSCNIFI 283
+EE+ N+F
Sbjct: 242 VEEMGGMNLFF 252
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 339 bits (871), Expect = e-116
Identities = 77/225 (34%), Positives = 120/225 (53%), Gaps = 2/225 (0%)
Query: 62 DWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRK 121
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++
Sbjct: 24 PGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKG 83
Query: 122 EDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIR 181
+D Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+R
Sbjct: 84 KDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVR 143
Query: 182 PLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKA 240
P+L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 144 PVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKL 203
Query: 241 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK 285
NY P + A RG VL+L + + L EV + NIF+
Sbjct: 204 GGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYW 247
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 333 bits (855), Expect = e-113
Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 3/226 (1%)
Query: 62 DWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 120
D +NL FG D+M T++ S+++ +EK + + L P S L+Y LFEG+KA+R
Sbjct: 43 DPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFR 102
Query: 121 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYI 180
D ++ LF+P+ N R+ A R +P ++ ++ ++Q ++ WVP SLYI
Sbjct: 103 GVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYI 162
Query: 181 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVK 239
RP +G+ P LG+ + V SPVG YF G P++L+ ++ RA GG G K
Sbjct: 163 RPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCK 222
Query: 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK 285
NY L A A + G VL+L + + + EV + N+F+
Sbjct: 223 MGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQ-ITEVGTMNLFLYW 267
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 80.7 bits (200), Expect = 1e-17
Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 19/187 (10%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
L+YG +FEG++AY G + FR ++ R A+ + M P + ++ +A+K+
Sbjct: 29 LHYGTSVFEGIRAYETAKGPAI-FRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVR 87
Query: 165 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEY--TFLVFASPVGNYFKEGL--APL 219
N G S YIRPL +G+ LG+ P P +V A G Y E
Sbjct: 88 RN-------GYRSCYIRPLAWMGAKA-LGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGA 139
Query: 220 NLYVEDEFHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 278
L + R G K NY A A G + L LD + + E S
Sbjct: 140 RLITSS-WARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDE--EGYVAEGSG 196
Query: 279 CNIFILK 285
N+F ++
Sbjct: 197 ENLFFVR 203
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like
PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A
{Corynebacterium glutamicum}
Length = 315
Score = 80.8 bits (200), Expect = 1e-17
Identities = 42/199 (21%), Positives = 67/199 (33%), Gaps = 32/199 (16%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165
L G G+FE + DG ++ R + A + +P P ++ + A +
Sbjct: 43 LTRGDGIFETLLIR---DGHA--CNVRRHGERFKASAALLGLPEPILEDWEKATQMGI-- 95
Query: 166 NKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAP--------------EYTFLVFASPVGN 210
+ W P G L G GLA E+ V S G
Sbjct: 96 -ESWYSHPNAGEASCTWTLSRGRSS-TGLASGWLTITPVSSDKLAQREHGVSVMTSSRGY 153
Query: 211 YFKEGLAPLNLYVEDEFHRAT----PGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLD 266
GL + E + P G K + YA + A+ AK+ GF DV++ D
Sbjct: 154 SIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTL-AYAANMAALRYAKSNGFDDVIFTD 212
Query: 267 SVNKKNLEEVSSCNIFILK 285
+ E ++ + K
Sbjct: 213 G---DRVLEGATSTVVSFK 228
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 79.9 bits (198), Expect = 2e-17
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
L+YG +FEG++ Y G +V FR ++ RL A+ P SID+ ++A +
Sbjct: 30 LHYGTSVFEGIRCYDSHKGPVV-FRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIR 88
Query: 165 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYT--FLVFASPVGNYFKEGL--APL 219
N S YIRPL+ VG +G+ P Y+ ++ A P G Y +
Sbjct: 89 KN-------NLTSAYIRPLIFVGDVG-MGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGI 140
Query: 220 NLYVEDEFHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 278
+ V ++RA P KA NY L S A+ G+ + + LD + E +
Sbjct: 141 DAMVSS-WNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDV--NGYISEGAG 197
Query: 279 CNIFILK 285
N+F +K
Sbjct: 198 ENLFEVK 204
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 80.0 bits (198), Expect = 3e-17
Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 17/186 (9%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
L+YG G+FEG++AY+ DG +FR ++ RL A+ M P + A +
Sbjct: 52 LHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQRDVVR 111
Query: 165 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAP-EYTFLVFASPVGNYFKEGL--APLN 220
NK S Y+RP++ +GS LG++ + A P G Y E +
Sbjct: 112 ENKL-------ESCYLRPIIWIGSEK-LGVSAKGNTIHVAIAAWPWGAYLGEEGLAKGIR 163
Query: 221 LYVEDEFHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSC 279
+ F R + KA Y + A A G+ + L LD + E S
Sbjct: 164 VKTSS-FTRHHVNVSMVRAKASGWYVNSILANQEATADGYDEALLLDV--DGYVSEGSGE 220
Query: 280 NIFILK 285
N F++
Sbjct: 221 NFFLVN 226
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
pneumophila}
Length = 272
Score = 74.9 bits (185), Expect = 9e-16
Identities = 38/195 (19%), Positives = 79/195 (40%), Gaps = 29/195 (14%)
Query: 98 ELSPSSGV---LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SID 153
+++PS G+ + G+GLFE ++ + + RL A ++ +P S D
Sbjct: 12 DMTPSFGIDDRIFLGEGLFETIRVN---SSK--PSFAYMHWERLGNSARQLGIPFEISFD 66
Query: 154 QFIDAVKQTALANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYTFLVFAS-PVGNY 211
+ + + Q + I+ +L G GLA + + L+F +
Sbjct: 67 DWFEHLIQKIQKDNL-------YHGGIKAILSGGPAS-RGLAERGQVSQLIFQTFNYSIQ 118
Query: 212 FKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAP-VLKAISRAKNRGFSDVLYLDSVNK 270
P+ L + R +K++ NY ++ A +A G D L+ ++ N
Sbjct: 119 KH----PVRLISI-NWLRDKANPLYQLKSV-NYLEAII-AQRQAIAVGADDALFFNTEN- 170
Query: 271 KNLEEVSSCNIFILK 285
++ E + N+F+++
Sbjct: 171 -HVTETTCANLFLIE 184
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 74.1 bits (183), Expect = 1e-15
Identities = 33/186 (17%), Positives = 65/186 (34%), Gaps = 27/186 (14%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165
+G G F + DG++ L + RLQ +R+ + Q +K A
Sbjct: 19 TQFGDGCFTTARVI---DGKVSLL--SAHIQRLQDACQRLMISCDFWPQLEQEMKTLAAE 73
Query: 166 NKRWVPPPGKGSLYIRPLLV--GSGPILGLAPAPEY--TFLVFASPVGNYFKEGLA-PLN 220
+ + ++ +++ GSG G + T ++ + ++ +
Sbjct: 74 QQ---------NGVLK-VVISRGSGG-RGYSTLNSGPATRILSVTAYPAHYDRLRNEGIT 122
Query: 221 LYVEDEFHRATPGGAGGVKAISNYAP-VLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSC 279
L + G+K + N VL S + + L LDS + + E +
Sbjct: 123 LALSP-VRLGRNPHLAGIKHL-NRLEQVL-IRSHLEQTNADEALVLDS--EGWVTECCAA 177
Query: 280 NIFILK 285
N+F K
Sbjct: 178 NLFWRK 183
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 70.3 bits (173), Expect = 4e-14
Identities = 36/185 (19%), Positives = 62/185 (33%), Gaps = 26/185 (14%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165
L YG GLFE + G +++ RL+ G R+ +P + A
Sbjct: 41 LAYGDGLFETLAVR---AGT--PRLLERHLARLEEGCRRLAIP-LDTAALRQELLAFCAA 94
Query: 166 NKRWVPPPGKGSLYIRPLL-VGSGPILGLAPA--PEYTFLVFASPVGNYFKEGLA-PLNL 221
+ ++ G G G AP ++ SP Y + + L
Sbjct: 95 LG---------DGVAKLIVTRGEGL-RGYAPPAEASPRRILSGSPRPAYPERHWQQGVRL 144
Query: 222 YVEDEFHRATPGGAGGVKAISNYAP-VLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCN 280
+ A G+K + N VL A + + G ++ L LD + E N
Sbjct: 145 FAC-RTRLAEQPLLAGLKHL-NRLEQVL-ARAEWSDAGHAEGLMLDVHE--RVVEGVFSN 199
Query: 281 IFILK 285
+ ++
Sbjct: 200 LLLVL 204
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 60.2 bits (147), Expect = 8e-11
Identities = 35/183 (19%), Positives = 71/183 (38%), Gaps = 34/183 (18%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165
L +G +F ++A G+ +++ RL+ A + + P + F++ ++ A
Sbjct: 18 LYHGASVFTTLRAE---GGR--PLWLEEHLARLRRHALALGLSYPGDEAFLEDLEALLRA 72
Query: 166 NKRWVPPPGKGSLYIRPLL-VGSGP-ILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYV 223
+ + +R VG G + P P+ Y +EG + + +
Sbjct: 73 FPK--------APCLRLRFTVGEGVRLSEARPYAPL-------PLSLY-REG---VRVRL 113
Query: 224 EDEFHRATPGGAGGVKAISNYAP-VLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF 282
+R P A K NY P L A+ A+ G + L LD+ ++ + S +
Sbjct: 114 TG--YRVHPDLA-RYKT-GNYLPYRL-ALEEARKEGAFEGLLLDAFG--HVVDGSRTSPL 166
Query: 283 ILK 285
+ +
Sbjct: 167 LFR 169
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 59.9 bits (146), Expect = 1e-10
Identities = 32/183 (17%), Positives = 62/183 (33%), Gaps = 35/183 (19%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
+ ++E ++ Y F ++ RL+ A+ +P S D+F +K A
Sbjct: 36 KSLQGAVYETLRTY---SRA--PFAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGAD 90
Query: 165 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYV 223
K+ + I+ L SG + L SP+ E + + +
Sbjct: 91 EFKQ--------EVRIKVYLFPDSGEV-----------LFVFSPLNIPDLE--TGVEVKI 129
Query: 224 EDEFHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF 282
R +K + ++R + DV+ L + E S N+F
Sbjct: 130 S-NVRRIPDLSTPPALKI-TGR--TDIVLARREIVDCYDVILLGLNG--QVCEGSFSNVF 183
Query: 283 ILK 285
++K
Sbjct: 184 LVK 186
>3qqm_A MLR3007 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Length = 221
Score = 56.1 bits (136), Expect = 2e-09
Identities = 29/178 (16%), Positives = 43/178 (24%), Gaps = 30/178 (16%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165
L E M+ G L A RL A + Q I V AL
Sbjct: 12 DTADFELIETMRWQ---PGTSFLRFDRHLA-RLYGSAAELGFACD--PQRIAEVLSDALD 65
Query: 166 NKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVED 225
R ++ R L + + P + LA
Sbjct: 66 GAR-------TAMRTR-LALARNGDATASAQP-----YEPLAADKVWILRLART------ 106
Query: 226 EFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFI 283
+ K S A S +VL + + + E + N+F
Sbjct: 107 --RLDSQNTLLRHKT-SRRQLYTHARSEYLVTQADEVLLANE--RGEICEGTITNVFA 159
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 53.2 bits (129), Expect = 2e-08
Identities = 38/207 (18%), Positives = 69/207 (33%), Gaps = 55/207 (26%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
+G G++E +K Y +G+ +F +++ RL AE++ + P + D+F + +
Sbjct: 24 YQFGDGVYEVVKVY---NGE--MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVE 78
Query: 165 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLA-PAPEYTFLVFASPVGNYFKEGLAPLNLY 222
N + +I + G+ P P ++ N
Sbjct: 79 KN-------ELNTGHIYFQVTRGTSP-RAHQFPENTVKPVIIGYTKENPRPL-------- 122
Query: 223 VEDEFHRATPGGAGGVKAIS--------------NY-APVLKAISRAKNRGFSDVLYLDS 267
GVKA N VL A A +G + + L
Sbjct: 123 ---------ENLEKGVKATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAI-LHR 171
Query: 268 VNKKNLEEVSSCNIFILKVLLNSKFWT 294
+ E SS N+F +K + +T
Sbjct: 172 --NNTVTEGSSSNVFGIK---DGILYT 193
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 4e-04
Identities = 57/371 (15%), Positives = 92/371 (24%), Gaps = 150/371 (40%)
Query: 2 MRPATMIRNACLRNFSQSLRV--GSAF----LKSGDFCRYTSQAAASLQQDCEPSA---- 51
RP T + + + L V S F L+ F + + D EP+
Sbjct: 6 TRPLT-LSHG---SLEHVLLVPTASFFIASQLQE-QFNKILPEPTEGFAADDEPTTPAEL 60
Query: 52 ----------YSDDESADHMDWDNLGFGLTP--ADYMYTMKCSND--------------- 84
+ D L LT Y+ ND
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFD-QVLNLCLTEFENCYL----EGNDIHALAAKLLQENDTT 115
Query: 85 ----------YFEKGRLSRYGKIELSPSSGVLN---------Y----GQGLFEGMKAYRK 121
Y +++ + +S + GQG + Y +
Sbjct: 116 LVKTKELIKNYITARIMAK-RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD---DYFE 171
Query: 122 EDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDA--------VKQTALANK------ 167
E L+ + + I ++ T A K
Sbjct: 172 E---------------LR---DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 168 ---RWVPPPGK--GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLY 222
W+ P Y+ + + S P++G+ Y +V A G P L
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHY--VVTAK------LLGFTPGELR 264
Query: 223 VEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF 282
AT G V A+ AI+ S + SV K
Sbjct: 265 --SYLKGATGHSQGLVTAV--------AIAETD----SWESFFVSVRK------------ 298
Query: 283 ILKVLLNSKFW 293
+ VL F+
Sbjct: 299 AITVL----FF 305
Score = 33.5 bits (76), Expect = 0.11
Identities = 53/292 (18%), Positives = 80/292 (27%), Gaps = 118/292 (40%)
Query: 56 ESADHMDWDNLGFGLT------P----------------ADYMYTMKCSNDYFEKGRLS- 92
AD+ D GF + P +Y M + G+L
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS-AMIF--ETIVDGKLKT 1703
Query: 93 ---------RYGKIELSPSSGVLN---YGQ--------GLFEGMKAYRKEDGQLVLFRPD 132
G+L+ + Q FE +K G L D
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK----SKG---LIPAD 1756
Query: 133 Q----------NAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKG-SLY-- 179
A L + A+ M SI+ ++ V + + VP G S Y
Sbjct: 1757 ATFAGHSLGEYAA--LASLADVM-----SIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 180 --IRPLLVGSGPILGLAP--------APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHR 229
I P V + +LV V NY N
Sbjct: 1810 IAINPGRVAAS--FSQEALQYVVERVGKRTGWLV--EIV-NY--------N--------- 1847
Query: 230 ATPGG----AGGVKAISNYAPVLKAISRAKNRGFSDVLYL-DSVNKKNLEEV 276
AG ++A+ VL I + + D++ L S+ +LEEV
Sbjct: 1848 -VENQQYVAAGDLRALDTVTNVLNFI-KLQK---IDIIELQKSL---SLEEV 1891
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.21
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 20/46 (43%)
Query: 117 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQT 162
+A +K L L+ D +P++ A+K T
Sbjct: 20 QALKKLQASLKLYADDS---------------APAL-----AIKAT 45
Score = 27.2 bits (59), Expect = 4.9
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 10/32 (31%)
Query: 213 KEGL----APLNLYVEDEFHRATPGGAGGVKA 240
K+ L A L LY +D + P A +KA
Sbjct: 19 KQALKKLQASLKLYADD----SAP--ALAIKA 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.28
Identities = 44/301 (14%), Positives = 74/301 (24%), Gaps = 116/301 (38%)
Query: 12 CLRNFSQSLRVGSAFLKSGDFCRYTSQAAASLQQDC-EPSAYSDDESADHMDWDNLGFGL 70
L S+ + F++ Y + ++ + +PS +
Sbjct: 70 TLL--SKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQR---------- 116
Query: 71 TPADYMYTMKCSNDYFEKGRLSRYGKI--------ELSPSSGVLNYGQGLFEGMKAYRKE 122
D +Y N F K +SR EL P+ VL G G
Sbjct: 117 ---DRLYN---DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL---GS------ 161
Query: 123 DGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRP 182
G+ + A +C+ + + W+
Sbjct: 162 -GKTWV-------------ALDVCLSYKVQCKMDFKI--------FWL------------ 187
Query: 183 LLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG--LAPL-NLYVEDEFHRATPGGAGGVK 239
+ N L L L ++ P
Sbjct: 188 ------------------------NLKNCNSPETVLEMLQKLL-----YQIDPNWTSRSD 218
Query: 240 AISNYAPVLKAISRAKNRGFSDVLY------LDSV-NKKNLEEVS-SCNIFILKVLLNSK 291
SN + +I R Y L +V N K + SC K+LL ++
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-----KILLTTR 273
Query: 292 F 292
F
Sbjct: 274 F 274
Score = 28.7 bits (63), Expect = 2.8
Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 22/136 (16%)
Query: 170 VPPPGKGSLYIRPLLVGSGP-----ILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVE 224
G+L + L+ + Y FL SP+ ++ +Y+E
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL--MSPIKTEQRQPSMMTRMYIE 114
Query: 225 --DEFHRA----TPGGAGGVKAISNYAPVLKAISRAKN------RGF--SDVLYLDSVNK 270
D + ++ L + AKN G + + LD
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WVALDVCLS 173
Query: 271 KNLEEVSSCNIFILKV 286
++ IF L +
Sbjct: 174 YKVQCKMDFKIFWLNL 189
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131,
NYSGXRC, structural genomics, protein structure
initiative; 2.04A {Pseudomonas syringae PV}
Length = 398
Score = 28.7 bits (64), Expect = 2.5
Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 17/96 (17%)
Query: 87 EKGRLSRYGKIELSPSSGVLNY-----GQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTG 141
+ ++ G L P++ + + +GLFE + +A
Sbjct: 300 QPAQILERGMGYLHPNALIDDRIGGGHPEGLFEAWANLYYRFALAM------DATDRSDT 353
Query: 142 AERMCMPSPSID------QFIDAVKQTALANKRWVP 171
+ P ID ++++ +A + WV
Sbjct: 354 QALSAVRYPGIDAGVEGVRWVERCVLSADNDSIWVA 389
>3vg8_G Hypothetical protein TTHB210; alpha and beta proteins (A+B),
unknown function; 2.20A {Thermus thermophilus}
Length = 116
Score = 27.5 bits (60), Expect = 2.6
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 173 PGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATP 232
PG G+LY+ P + GP L A +VF P+ + L + YV+
Sbjct: 16 PGLGTLYVDPSTLPEGPFLAYDRAGNLVKVVFMVPL-----KKLNESHKYVDIGTKTLRA 70
Query: 233 GGAGGVKAISNY 244
G + ++
Sbjct: 71 LGITRIDHVNMI 82
>2d1g_A Acid phosphatase; ACPA, decavanadate vanadate, hydrolase; HET: DVT
ETE PGE; 1.75A {Francisella tularensis subsp}
Length = 498
Score = 27.2 bits (59), Expect = 8.4
Identities = 18/133 (13%), Positives = 34/133 (25%), Gaps = 12/133 (9%)
Query: 50 SAYSDDESADHMDWDNLGF-----GLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSG 104
S ++ A D N+G G+T + K ++ + + S
Sbjct: 223 SGDTNTAVAKITDGYNIGHYLTQKGITWGWFQGGFKPTSYSGKTAICDAMSTNKFGVKSR 282
Query: 105 VLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 164
F K + G+ I +F A+ Q +
Sbjct: 283 DYIPHHEPFNYWKETSN-------PHHLAPSDDKYIGSNDQANHQYDISEFWKALDQNNM 335
Query: 165 ANKRWVPPPGKGS 177
++ PG
Sbjct: 336 PAVSYLKAPGYQD 348
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,766,721
Number of extensions: 283159
Number of successful extensions: 584
Number of sequences better than 10.0: 1
Number of HSP's gapped: 560
Number of HSP's successfully gapped: 27
Length of query: 311
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 218
Effective length of database: 4,105,140
Effective search space: 894920520
Effective search space used: 894920520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)