RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021518
(311 letters)
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid
aminotransferase {Human (Homo sapiens), mitochondrial
[TaxId: 9606]}
Length = 363
Score = 167 bits (422), Expect = 1e-49
Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 1/226 (0%)
Query: 61 MDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 120
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++
Sbjct: 21 GPGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFK 80
Query: 121 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYI 180
+D Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+
Sbjct: 81 GKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYV 140
Query: 181 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK-EGLAPLNLYVEDEFHRATPGGAGGVK 239
RP+L+G+ P LG++ V PVG YF + P++L + F RA GG G K
Sbjct: 141 RPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYK 200
Query: 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK 285
NY P + A RG VL+L + + E +
Sbjct: 201 LGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWT 246
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
{Escherichia coli [TaxId: 562]}
Length = 304
Score = 101 bits (253), Expect = 1e-25
Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 13/201 (6%)
Query: 89 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
G + R+ ++ S L+YG +FEG++ Y G V+FR ++ RL A+ P
Sbjct: 9 GEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGP-VVFRHREHMQRLHDSAKIYRFP 67
Query: 149 SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTF--LVFAS 206
+ A + + S YIRPL+ +G+ P Y+ ++ A
Sbjct: 68 VSQSIDELME------ACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAF 121
Query: 207 PVGNYFKEGLAPLNL-YVEDEFHRATPGGAGGVKAIS-NYAPVLKAISRAKNRGFSDVLY 264
P G Y + + ++RA P NY L S A+ G+ + +
Sbjct: 122 PWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIA 181
Query: 265 LDSVNKKNLEEVSSCNIFILK 285
LD + E + N+F +K
Sbjct: 182 LD--VNGYISEGAGENLFEVK 200
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
strain YM-1 [TaxId: 1409]}
Length = 277
Score = 54.2 bits (129), Expect = 4e-09
Identities = 30/198 (15%), Positives = 64/198 (32%), Gaps = 18/198 (9%)
Query: 89 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
++ + ++++ +G G++E +K Y E +F +++ RL AE++ +
Sbjct: 7 DQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRIT 61
Query: 149 SPSIDQFI-DAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 207
P + + N+ G +Y + S ++ +
Sbjct: 62 IPYTKDKFHQLLHELVEKNELN-----TGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTK 116
Query: 208 VGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDS 267
E L E R + N + A A +G + +
Sbjct: 117 ENPRPLENLEKGVKATFVEDIRWLRCDIKSL----NLLGAVLAKQEAHEKGCYEAILHR- 171
Query: 268 VNKKNLEEVSSCNIFILK 285
+ E SS N+F +K
Sbjct: 172 --NNTVTEGSSSNVFGIK 187
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli
[TaxId: 562]}
Length = 269
Score = 49.7 bits (117), Expect = 1e-07
Identities = 19/146 (13%), Positives = 38/146 (26%), Gaps = 12/146 (8%)
Query: 99 LSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDA 158
L+ S +G G F + DG+ + + RLQ +R+ + Q
Sbjct: 12 LAVSDRATQFGDGCFTTARVI---DGK--VSLLSAHIQRLQDACQRLMISCDFWPQLEQ- 65
Query: 159 VKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAP 218
K G L + G + T ++ + ++
Sbjct: 66 ------EMKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNE 119
Query: 219 LNLYVEDEFHRATPGGAGGVKAISNY 244
G+K ++
Sbjct: 120 GITLALSPVRLGRNPHLAGIKHLNRL 145
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId:
1260]}
Length = 53
Score = 26.5 bits (58), Expect = 0.62
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 249 KAISRAKNRGFSDVLYLDSVNK-KNLEEVSSCNIFILK 285
AI+ K G + Y +++NK K +EEV++ ILK
Sbjct: 13 DAIAELKKAGITSDFYFNAINKAKTVEEVNALKNEILK 50
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 28.6 bits (62), Expect = 0.85
Identities = 13/135 (9%), Positives = 32/135 (23%), Gaps = 4/135 (2%)
Query: 30 GDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKG 89
+ + A + + + + + + +
Sbjct: 214 EAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQ 273
Query: 90 RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRP-DQNAIRLQTGAERMCMP 148
L G +E+ + L M + G N +R T
Sbjct: 274 GLEGLGGVEVLGGTEANILFCRLDSAMIDALLKAGFGFYHDRWGPNVVRFVTSF---ATT 330
Query: 149 SPSIDQFIDAVKQTA 163
+ +D ++ V+ A
Sbjct: 331 AEDVDHLLNQVRLAA 345
>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus
halodurans [TaxId: 86665]}
Length = 224
Score = 25.6 bits (56), Expect = 6.4
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 103 SGVLNYGQGLF----EGMKAYRKEDGQLVLFRPDQNAIRLQTG---AERMCMPSPSIDQF 155
G+ N+ + M+A + + F D AE + +P + F
Sbjct: 98 VGLNNHMGSKIVENEKIMRAILEVVKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIF 157
Query: 156 IDAVKQTA 163
+D +
Sbjct: 158 LDNTHSSR 165
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,161,282
Number of extensions: 54104
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 9
Length of query: 311
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,240,546
Effective search space: 280363396
Effective search space used: 280363396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)