BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021520
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 34 DCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNP-DPDSRKLFVKIANAYEILKDEATRE 92
D Y +LGV +NA+ EIKKAYY+L+ KYHPD N DP +++ F ++A AYE+L DE R+
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 93 QYD 95
QYD
Sbjct: 68 QYD 70
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 45/60 (75%)
Query: 36 YDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPDPDSRKLFVKIANAYEILKDEATREQYD 95
YD+LGV ++A+ +IKKA++KL++KYHPDKN PD+ F +IA AYE L D R++YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Query: 36 YDLLGVSQNANSSEIKKAYYKLSLKYHPDKNP-DPDSRKLFVKIANAYEILKDEATREQY 94
Y LLGVS+ A+S EI++A+ KL+LK HPDKNP +P++ F+KI AYE+LKDE R++Y
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83
Query: 95 D 95
D
Sbjct: 84 D 84
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Query: 36 YDLLGVSQNANSSEIKKAYYKLSLKYHPDKNP-DPDSRKLFVKIANAYEILKDEATREQY 94
Y LLGVS+ A+S EI++A+ KL+LK HPDKNP +P++ F+KI AYE+LKDE R++Y
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64
Query: 95 D 95
D
Sbjct: 65 D 65
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%)
Query: 34 DCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPDPDSRKLFVKIANAYEILKDEATREQ 93
D Y +LGVS+ A+ ++IKKAY KL+ ++HPDKN DP + F++I+ AYEIL +E R
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTN 77
Query: 94 YDYAIAHP 101
YD+ + P
Sbjct: 78 YDHYGSGP 85
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 36 YDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPDPDSRKLFVKIANAYEILKDEATREQYD 95
YD+LGV NA E+KKAY KL+LKYHPDKNP+ + F +I+ AYE+L D RE YD
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEK--FKQISQAYEVLSDAKKRELYD 66
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 45/60 (75%), Gaps = 2/60 (3%)
Query: 36 YDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPDPDSRKLFVKIANAYEILKDEATREQYD 95
YD+LGV +A+ +E+KKAY K++LK+HPDKN PD + F +I+ AYE+L DE R+ YD
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKN--PDGAEQFKQISQAYEVLSDEKKRQIYD 68
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 9/104 (8%)
Query: 28 IYCDEDDCYDLLGVSQNA-NSSEIKKAYYKLSLKYHPDKNPDPDSRKL----FVKIANAY 82
+YC ++CYD+L V++ + ++ KAY L+ K+HPD+ + + + L F IA AY
Sbjct: 10 LYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAY 69
Query: 83 EILKDEATREQYDYAIAHPEEVFYNAARYYHAYYGHKTDPRAVL 126
E LKD+ + YDY + HP++ FYN Y+ YY + P+ L
Sbjct: 70 ETLKDDEAKTNYDYYLDHPDQRFYN----YYQYYRLRAAPKVDL 109
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 36 YDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPD-PDSRKLFVKIANAYEILKDEATREQY 94
Y +LG+ +NA S +IKK+Y KL+LKYHPDKNPD P++ F +I NA+ IL D R Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 95 D 95
D
Sbjct: 80 D 80
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 34 DCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPDPDSRKLFVKIANAYEILKDEATREQ 93
D Y++LGVS+ A+ ++KKAY +L+LK+HPDKN P + + F I AY +L + R+Q
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 94 YDYAIAHP 101
YD + P
Sbjct: 68 YDQFGSGP 75
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 32 EDDCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPDPDSRKLFVKIANAYEILKDEATR 91
E YDLLGVS +AN E+KK Y K +LKYHPDK P D+ K F +I+ A+EIL D R
Sbjct: 7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPDK-PTGDTEK-FKEISEAFEILNDPQKR 64
Query: 92 EQYD 95
E YD
Sbjct: 65 EIYD 68
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 34 DCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNP-DPDSRKLFVKIANAYEILKDEATRE 92
D Y++LGVS+ A EI+KAY +L++KYHPD+N D ++ F +I AYE+L D R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 93 QYD 95
YD
Sbjct: 64 AYD 66
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 34 DCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNP-DPDSRKLFVKIANAYEILKDEATRE 92
D Y++LGVS+ A EI+KAY +L++KYHPD+N D ++ F +I AYE+L D R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 93 QYD 95
YD
Sbjct: 64 AYD 66
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%)
Query: 34 DCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPDPDSRKLFVKIANAYEILKDEATREQ 93
D Y LG+++ A+ EIK+AY + +L+YHPDKN +P + + F +IA AY++L D RE
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 94 YD 95
+D
Sbjct: 64 FD 65
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 34 DCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNP-DPDSRKLFVKIANAYEILKDEATRE 92
D Y++LGVS+ A EI+KAY +L++KYHPD+N D ++ F +I AYE+L D R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 93 QYD 95
YD
Sbjct: 64 AYD 66
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 34 DCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPD--PDSRKLFVKIANAYEILKDEATR 91
D Y++L V + A+S IKKAY KL+LK+HPDKNP+ ++ + F ++A AYE+L D R
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 92 EQYDYAIAHP 101
+ YD + P
Sbjct: 70 DIYDRYGSGP 79
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 36 YDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPD--PDSRKLFVKIANAYEILKDEATREQ 93
Y++LGV +A+ +IKKAY KL+L++HPDKNPD ++ K F ++ AYE+L D R
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 94 YDYA 97
YD A
Sbjct: 72 YDRA 75
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 34 DCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPDPDSRKLFVKIANAYEILKDEATREQ 93
D Y +LGV + IK AY +L+ KYHPD + + D+ F +A A+E+LKDE R +
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 94 YDYAIAHPEEVFYNAARYYH 113
YD H + + R H
Sbjct: 89 YDQLWQHRNDPGFGRQRQTH 108
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Query: 36 YDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPDPD--SRKLFVKIANAYEILKDEATREQ 93
Y++L V ++A++ +IKKAY + +L++HPDKNPD + K F ++A AYE+L D+ RE
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 94 YD 95
YD
Sbjct: 65 YD 66
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 34 DCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPDPDSRKLFVKIANAYEILKDEATREQ 93
D Y ++GV + IK AY +L+ KYHPD + +PD+ F ++A A+E+L DE R +
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 94 YDYAIAH 100
YD H
Sbjct: 66 YDQMWQH 72
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 36 YDLLGVSQNANSSEIKKAYYKLSLKYHPDKNP-DPDSRKLFVKIANAYEILKDEATREQY 94
YDLLGV A ++IK AYY+ YHPD+N ++ + F +I+ AY +L R +Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 95 DYAIAHPEEV 104
D + E++
Sbjct: 80 DRGLLSDEDL 89
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 34 DCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPD-------PDSRKLFVKIANAYEILK 86
D Y +LG +AN S++K+ Y KL L YHPDK + + F++I A++IL
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 87 DEATREQYDYAIAHP 101
+E T+++YD + P
Sbjct: 77 NEETKKKYDLQRSGP 91
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 34 DCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPD-------PDSRKLFVKIANAYEILK 86
D Y +LG +AN S++K+ Y KL L YHPDK + + F++I A++IL
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 87 DEATREQYD 95
+E T+ +YD
Sbjct: 71 NEETKREYD 79
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 34 DCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPD----PDSRKLFVKIANAYEILKDEA 89
D Y +LGV +NA EI KAY KL+L++HPD + + K F+ IA A E+L D
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 90 TREQYD 95
R+++D
Sbjct: 443 MRKKFD 448
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 34 DCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPD----PDSRKLFVKIANAYEILKDEA 89
D Y +LGV +NA EI KAY KL+L++HPD + + K F+ IA A E+L D
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 90 TREQYD 95
R+++D
Sbjct: 443 XRKKFD 448
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 31 DEDDCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPDPDSRKLFVKIANA 81
+ D +D+LGV A+ E+ KAY KL++ HPDK P S F + NA
Sbjct: 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNA 75
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 31 DEDDCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPD-PDSRKLFVKIANAYEILKDEA 89
D +D Y LLG + ++ +I + +L+ HPDK+P+ P + + F K+ A EIL +E
Sbjct: 18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEE 77
Query: 90 TREQYDY 96
+R +YD+
Sbjct: 78 SRARYDH 84
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
Length = 174
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 37 DLLGVSQNA--NSSEIKKAYYKLSLKYHPDKNPDPDSRKLFVKIANAYEILKD 87
DLLG+ ++A N ++KAY K ++HPDK D + K K+ Y+ ++D
Sbjct: 15 DLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMK---KMNTLYKKMED 64
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T
Antigen
Length = 114
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 37 DLLGVSQNA--NSSEIKKAYYKLSLKYHPDKNPDPDSRKLFVKIANAYEILKD 87
DLLG+ ++A N ++KAY K ++HPDK D + K K+ Y+ ++D
Sbjct: 12 DLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMK---KMNTLYKKMED 61
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 47 SSEIKKAYYKLSLKYHPDKNPD 68
SE KK +L LK+HPDKNP+
Sbjct: 30 ESERKKIIRRLYLKWHPDKNPE 51
>pdb|1V4N|A Chain A, Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosphorylase
Homologue From Sulfolobus Tokodaii
pdb|1V4N|B Chain B, Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosphorylase
Homologue From Sulfolobus Tokodaii
pdb|1V4N|C Chain C, Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosphorylase
Homologue From Sulfolobus Tokodaii
Length = 281
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 23/87 (26%)
Query: 7 IRWYAITSAIVLLLLISPSVAIYCDEDDCYDLLGVSQN-------------------ANS 47
I W + A ++ + + P V + C+ + CY ++G+ + N+
Sbjct: 178 IVWKEVFKADIIGMTLVPEVNLACEAEMCYSVIGMVTDYDVFADIPVTAEEVTKVMAENT 237
Query: 48 SEIKKAYYKLSLKYHPDKNPDPDSRKL 74
+++KK Y++ ++ P+K PD RK
Sbjct: 238 AKVKKLLYEV-IRRLPEK---PDERKC 260
>pdb|3GHG|C Chain C, Crystal Structure Of Human Fibrinogen
pdb|3GHG|F Chain F, Crystal Structure Of Human Fibrinogen
pdb|3GHG|I Chain I, Crystal Structure Of Human Fibrinogen
pdb|3GHG|L Chain L, Crystal Structure Of Human Fibrinogen
Length = 411
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Query: 10 YAITSAIVLLLLISPSVAIYCDEDDCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPDP 69
Y T+ + L + + D D+L +N +SE+K+ + L Y+PD++ P
Sbjct: 18 YCPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENK-TSEVKQLIKAIQLTYNPDESSKP 76
Query: 70 D--------SRKLFVKIANAYEILKDEATREQYDYAIAHPEEVF 105
+ SRK+ EI+K EA+ +D +I + +E++
Sbjct: 77 NMIDAATLKSRKMLE------EIMKYEASILTHDSSIRYLQEIY 114
>pdb|1SVA|1 Chain 1, Simian Virus 40
pdb|1SVA|2 Chain 2, Simian Virus 40
pdb|1SVA|3 Chain 3, Simian Virus 40
pdb|1SVA|4 Chain 4, Simian Virus 40
pdb|1SVA|5 Chain 5, Simian Virus 40
pdb|1SVA|6 Chain 6, Simian Virus 40
Length = 361
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 12 ITSAIVLLLLISPSVAIYCDEDDCY----DLLGVSQNANSSEIKKA---YYKLSLKYHPD 64
IT+ +LL V C D Y D+ G+ N + ++ K Y+K++L+
Sbjct: 236 ITNTATTVLLDEQGVGPLCKADSLYVSAVDICGLFTNTSGTQQWKGLPRYFKITLRKRSV 295
Query: 65 KNPDPDS 71
KNP P S
Sbjct: 296 KNPYPIS 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,933,910
Number of Sequences: 62578
Number of extensions: 342066
Number of successful extensions: 730
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 682
Number of HSP's gapped (non-prelim): 41
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)