Query 021522
Match_columns 311
No_of_seqs 95 out of 97
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 05:21:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hct_A TNF receptor-associated 98.9 1.2E-09 4.2E-14 85.8 3.8 98 28-163 17-116 (118)
2 1rmd_A RAG1; V(D)J recombinati 98.5 6.4E-08 2.2E-12 75.3 4.2 87 28-152 22-111 (116)
3 3hcs_A TNF receptor-associated 98.0 6.1E-06 2.1E-10 67.9 4.9 86 28-151 17-104 (170)
4 3knv_A TNF receptor-associated 97.9 5.4E-06 1.9E-10 68.2 3.3 89 26-152 28-128 (141)
5 1v87_A Deltex protein 2; ring- 97.1 0.00025 8.5E-09 54.5 3.3 66 26-113 22-93 (114)
6 2ecm_A Ring finger and CHY zin 97.1 0.00046 1.6E-08 46.3 4.1 49 27-114 3-55 (55)
7 3lrq_A E3 ubiquitin-protein li 97.1 0.00022 7.4E-09 54.7 2.7 49 27-113 20-69 (100)
8 3fl2_A E3 ubiquitin-protein li 97.1 0.00022 7.6E-09 55.9 2.9 49 28-114 51-99 (124)
9 2yur_A Retinoblastoma-binding 97.1 0.00046 1.6E-08 49.9 3.9 37 27-75 13-49 (74)
10 4ayc_A E3 ubiquitin-protein li 97.0 0.00059 2E-08 54.8 4.7 52 28-118 52-103 (138)
11 2ysl_A Tripartite motif-contai 97.0 0.00096 3.3E-08 47.1 5.3 51 27-113 18-68 (73)
12 2djb_A Polycomb group ring fin 97.0 0.00053 1.8E-08 49.1 3.8 50 27-114 13-62 (72)
13 4ic3_A E3 ubiquitin-protein li 97.0 0.00036 1.2E-08 51.0 2.6 22 26-47 21-42 (74)
14 2d8t_A Dactylidin, ring finger 96.9 0.00094 3.2E-08 47.6 4.4 23 25-47 11-33 (71)
15 2ecw_A Tripartite motif-contai 96.8 0.0011 3.8E-08 47.3 4.2 53 28-113 18-70 (85)
16 2csy_A Zinc finger protein 183 96.8 0.00069 2.4E-08 49.3 3.2 50 26-114 12-61 (81)
17 2ecy_A TNF receptor-associated 96.8 0.00047 1.6E-08 48.4 2.1 48 28-113 14-61 (66)
18 2egp_A Tripartite motif-contai 96.8 0.00043 1.5E-08 49.5 1.9 55 28-114 11-65 (79)
19 1jm7_A BRCA1, breast cancer ty 96.8 0.00085 2.9E-08 50.9 3.5 51 28-114 20-70 (112)
20 2ckl_B Ubiquitin ligase protei 96.8 0.00055 1.9E-08 56.1 2.6 49 28-113 53-101 (165)
21 2vje_A E3 ubiquitin-protein li 96.7 0.0019 6.5E-08 46.3 4.6 52 28-118 7-61 (64)
22 3ztg_A E3 ubiquitin-protein li 96.7 0.00096 3.3E-08 49.4 3.0 50 27-112 11-60 (92)
23 2ecv_A Tripartite motif-contai 96.6 0.0026 8.8E-08 45.4 4.5 54 28-114 18-71 (85)
24 2ecg_A Baculoviral IAP repeat- 96.6 0.00075 2.6E-08 49.1 1.7 20 28-47 24-43 (75)
25 3l11_A E3 ubiquitin-protein li 96.5 0.00057 1.9E-08 52.8 0.9 20 28-47 14-33 (115)
26 2kiz_A E3 ubiquitin-protein li 96.5 0.0017 5.8E-08 45.7 3.2 49 27-114 12-63 (69)
27 2yho_A E3 ubiquitin-protein li 96.5 0.0013 4.3E-08 49.2 2.7 21 28-48 17-37 (79)
28 2ckl_A Polycomb group ring fin 96.5 0.0059 2E-07 46.7 6.5 49 28-114 14-62 (108)
29 2ct2_A Tripartite motif protei 96.5 0.003 1E-07 45.8 4.5 52 27-114 13-68 (88)
30 1chc_A Equine herpes virus-1 r 96.5 0.0025 8.5E-08 44.5 3.9 51 28-117 4-55 (68)
31 2vje_B MDM4 protein; proto-onc 96.5 0.0031 1.1E-07 45.0 4.4 53 29-118 7-60 (63)
32 1x4j_A Ring finger protein 38; 96.4 0.0012 4.2E-08 47.3 2.1 37 26-75 20-59 (75)
33 2ea6_A Ring finger protein 4; 96.4 0.0011 3.8E-08 45.9 1.5 48 27-113 13-67 (69)
34 2ea5_A Cell growth regulator w 96.3 0.0022 7.6E-08 46.8 3.0 21 28-48 14-34 (68)
35 1iym_A EL5; ring-H2 finger, ub 96.3 0.002 6.7E-08 43.3 2.4 34 28-73 4-40 (55)
36 1bor_A Transcription factor PM 96.3 0.0016 5.4E-08 45.2 2.0 23 26-48 3-25 (56)
37 2d8s_A Cellular modulator of i 96.3 0.0041 1.4E-07 47.1 4.4 57 26-114 12-70 (80)
38 2xeu_A Ring finger protein 4; 96.3 0.0015 5.3E-08 44.6 1.8 48 28-114 2-56 (64)
39 1z6u_A NP95-like ring finger p 96.3 0.0019 6.3E-08 53.5 2.6 50 28-115 77-126 (150)
40 3ng2_A RNF4, snurf, ring finge 96.3 0.0015 5E-08 45.8 1.7 50 26-114 7-63 (71)
41 2ep4_A Ring finger protein 24; 96.3 0.0027 9.2E-08 45.2 3.0 48 28-114 14-64 (74)
42 3t6p_A Baculoviral IAP repeat- 96.2 0.0016 5.5E-08 61.2 2.2 21 27-47 293-313 (345)
43 2l0b_A E3 ubiquitin-protein li 96.0 0.0022 7.5E-08 48.3 1.7 48 27-113 38-88 (91)
44 2ecn_A Ring finger protein 141 96.0 0.0034 1.2E-07 44.2 2.5 48 27-114 13-60 (70)
45 1g25_A CDK-activating kinase a 96.0 0.0025 8.5E-08 44.6 1.8 49 28-114 2-55 (65)
46 2y43_A E3 ubiquitin-protein li 96.0 0.0046 1.6E-07 46.5 3.2 49 28-114 21-69 (99)
47 1t1h_A Gspef-atpub14, armadill 96.0 0.0075 2.6E-07 43.2 4.2 49 28-114 7-55 (78)
48 1jm7_B BARD1, BRCA1-associated 95.8 0.0035 1.2E-07 48.9 2.0 21 27-47 20-41 (117)
49 1e4u_A Transcriptional repress 95.7 0.0093 3.2E-07 44.8 4.1 12 103-114 51-62 (78)
50 2ect_A Ring finger protein 126 95.7 0.0058 2E-07 43.8 2.8 49 28-115 14-65 (78)
51 2y1n_A E3 ubiquitin-protein li 95.7 0.0072 2.5E-07 58.3 4.3 51 30-118 333-383 (389)
52 2ecl_A Ring-box protein 2; RNF 94.9 0.015 5E-07 43.1 2.8 14 28-41 14-27 (81)
53 4ap4_A E3 ubiquitin ligase RNF 94.6 0.0082 2.8E-07 45.9 0.7 36 27-75 5-47 (133)
54 2ysj_A Tripartite motif-contai 94.0 0.03 1E-06 38.6 2.5 36 27-75 18-53 (63)
55 4ap4_A E3 ubiquitin ligase RNF 93.9 0.019 6.4E-07 43.8 1.4 47 28-113 71-124 (133)
56 3dpl_R Ring-box protein 1; ubi 92.6 0.075 2.6E-06 42.1 3.1 45 28-74 36-87 (106)
57 1wgm_A Ubiquitin conjugation f 92.4 0.031 1.1E-06 43.3 0.6 22 27-48 20-41 (98)
58 2ecj_A Tripartite motif-contai 91.9 0.056 1.9E-06 36.2 1.4 35 27-74 13-47 (58)
59 3htk_C E3 SUMO-protein ligase 91.2 0.18 6.2E-06 46.8 4.4 32 16-47 168-200 (267)
60 1vyx_A ORF K3, K3RING; zinc-bi 91.0 0.1 3.5E-06 37.5 2.1 51 28-112 5-57 (60)
61 2kr4_A Ubiquitin conjugation f 89.8 0.068 2.3E-06 40.1 0.2 22 26-47 11-32 (85)
62 2kre_A Ubiquitin conjugation f 88.3 0.15 5.3E-06 39.5 1.3 21 27-47 27-47 (100)
63 2ct0_A Non-SMC element 1 homol 85.8 0.31 1E-05 36.9 1.7 34 30-75 16-49 (74)
64 3k1l_B Fancl; UBC, ring, RWD, 83.7 1.1 3.7E-05 43.7 4.9 69 25-113 304-372 (381)
65 2c2l_A CHIP, carboxy terminus 83.4 0.32 1.1E-05 41.3 1.0 21 27-47 206-226 (281)
66 4a0k_B E3 ubiquitin-protein li 82.6 0.27 9.2E-06 40.0 0.2 14 28-41 47-60 (117)
67 2a25_A Ubiquitin ligase SIAH1; 79.8 0.47 1.6E-05 40.8 0.7 29 128-156 35-65 (193)
68 3mjh_B Early endosome antigen 78.8 1.2 4E-05 29.9 2.3 20 138-157 13-32 (34)
69 2yu4_A E3 SUMO-protein ligase 76.4 1.1 3.9E-05 33.7 1.9 36 28-76 6-42 (94)
70 1wim_A KIAA0161 protein; ring 74.7 1.4 5E-05 32.7 2.1 56 28-111 4-61 (94)
71 2jun_A Midline-1; B-BOX, TRIM, 72.2 1.2 4.1E-05 33.4 1.0 20 28-47 2-24 (101)
72 2e6s_A E3 ubiquitin-protein li 61.6 3.7 0.00013 31.0 1.9 48 13-70 8-57 (77)
73 2f42_A STIP1 homology and U-bo 60.1 3.1 0.00011 36.0 1.4 35 28-75 105-139 (179)
74 2gli_A Protein (five-finger GL 58.8 5 0.00017 30.4 2.2 34 126-159 94-128 (155)
75 1wim_A KIAA0161 protein; ring 47.5 14 0.00048 27.2 3.1 66 101-178 4-89 (94)
76 1zw8_A Zinc-responsive transcr 47.3 10 0.00035 26.9 2.2 27 128-154 37-64 (64)
77 2c7n_A Rabex-5, GEF 1, RAB gua 42.2 24 0.00081 27.5 3.6 47 119-177 6-65 (74)
78 2ent_A Krueppel-like factor 15 40.6 14 0.00047 22.5 1.8 39 122-161 5-44 (48)
79 2jny_A Uncharacterized BCR; st 36.6 11 0.00037 28.3 0.9 12 101-112 9-20 (67)
80 1f62_A Transcription factor WS 36.2 11 0.00037 25.5 0.8 31 30-70 1-31 (51)
81 2bay_A PRE-mRNA splicing facto 36.0 15 0.00052 26.0 1.6 17 30-46 4-20 (61)
82 2ct1_A Transcriptional repress 34.5 24 0.00082 23.8 2.4 31 128-160 44-75 (77)
83 2gli_A Protein (five-finger GL 33.7 45 0.0015 25.0 4.0 53 102-154 97-154 (155)
84 1wev_A Riken cDNA 1110020M19; 33.3 11 0.00036 28.9 0.4 37 23-70 11-49 (88)
85 2dmd_A Zinc finger protein 64, 33.2 64 0.0022 22.2 4.5 57 102-160 36-94 (96)
86 2pk7_A Uncharacterized protein 32.9 13 0.00045 27.8 0.9 12 102-113 8-19 (69)
87 2jr6_A UPF0434 protein NMA0874 32.8 14 0.00047 27.6 1.0 13 101-113 7-19 (68)
88 2hf1_A Tetraacyldisaccharide-1 32.7 14 0.00047 27.7 0.9 12 102-113 8-19 (68)
89 2ku3_A Bromodomain-containing 32.5 20 0.00069 26.6 1.8 36 25-70 12-49 (71)
90 2js4_A UPF0434 protein BB2007; 32.1 14 0.00048 27.8 0.9 13 101-113 7-19 (70)
91 1wil_A KIAA1045 protein; ring 31.3 33 0.0011 27.6 2.9 69 28-119 14-82 (89)
92 1wjp_A Zinc finger protein 295 30.8 22 0.00077 25.4 1.8 56 103-161 43-100 (107)
93 2d9h_A Zinc finger protein 692 30.5 36 0.0012 22.9 2.7 60 101-162 6-70 (78)
94 3nw0_A Non-structural maintena 30.2 21 0.00073 31.6 1.9 35 29-75 180-214 (238)
95 2yt5_A Metal-response element- 29.9 15 0.00053 25.8 0.8 35 26-70 3-39 (66)
96 2yt9_A Zinc finger-containing 29.4 75 0.0026 21.8 4.3 54 102-157 35-92 (95)
97 2kpi_A Uncharacterized protein 29.3 17 0.00059 26.1 0.9 12 101-112 9-20 (56)
98 2adr_A ADR1; transcription reg 27.8 28 0.00095 22.2 1.7 53 103-157 3-57 (60)
99 3uk3_C Zinc finger protein 217 27.1 30 0.001 21.7 1.7 50 103-154 5-56 (57)
100 3u5n_A E3 ubiquitin-protein li 26.7 39 0.0013 28.8 2.8 32 26-70 4-35 (207)
101 2k5r_A Uncharacterized protein 25.5 20 0.00069 28.7 0.8 13 102-114 8-20 (97)
102 1wvk_A AT2G23090/F21P24.15; st 24.4 44 0.0015 26.4 2.5 43 97-164 40-82 (86)
103 2epx_A Zinc finger protein 28 23.5 55 0.0019 19.6 2.4 35 125-160 8-42 (47)
104 2rpc_A Zinc finger protein ZIC 23.1 60 0.002 24.5 3.0 11 99-109 22-32 (155)
105 2l43_A N-teminal domain from h 23.1 79 0.0027 24.1 3.7 33 28-70 24-58 (88)
106 2dlq_A GLI-kruppel family memb 22.3 91 0.0031 22.2 3.8 51 101-153 6-58 (124)
107 2csh_A Zinc finger protein 297 22.0 43 0.0015 23.8 2.0 52 102-155 37-90 (110)
108 2eln_A Zinc finger protein 406 22.0 49 0.0017 21.0 2.0 27 126-152 6-33 (38)
109 2d9k_A FLN29 gene product; zin 20.9 9.7 0.00033 27.1 -1.8 55 100-158 15-69 (75)
110 2fiy_A Protein FDHE homolog; F 20.4 33 0.0011 31.9 1.2 19 27-45 180-198 (309)
No 1
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.86 E-value=1.2e-09 Score=85.84 Aligned_cols=98 Identities=15% Similarity=0.214 Sum_probs=72.3
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcc
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPL 107 (311)
++.+||||++...++|.|.|. -.| +..|+.++-+... ..||+
T Consensus 17 ~~~~C~IC~~~~~~p~~~~Cg------------H~f-C~~Ci~~~~~~~~-------------------------~~CP~ 58 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCG------------HRF-CKACIIKSIRDAG-------------------------HKCPV 58 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTS------------CEE-EHHHHHHHHHHHC-------------------------SBCTT
T ss_pred CCCCCCcCChhhcCeEECCcC------------Chh-hHHHHHHHHhhCC-------------------------CCCCC
Confidence 678999999999999987553 111 3578888765421 27999
Q ss_pred ccccccCEE--EcchhHHhhccccCcCcccCccccccHHHHHHhhhhhCCCCCCCCCC
Q 021522 108 CRGEVTGWV--VADKVRDYLNEKKRCCEEDQCTFAGTYLELRKHAQLEHPHSRPSKID 163 (311)
Q Consensus 108 CRGeVkGWt--VVe~AR~~LN~K~RsC~~e~CsF~GtY~eLrKHar~~HP~arP~eVD 163 (311)
||..+..-. .....++.|+.-+-.|...+|.++|+|.+|.+|.++-|..+-|-.+|
T Consensus 59 Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~gC~~~~~~~~l~~H~~~c~~~~~~~~~~ 116 (118)
T 3hct_A 59 DNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALLEHHHH 116 (118)
T ss_dssp TCCBCCGGGCEECHHHHHHHHTSEEECSSTTCCCEEEGGGSGGGTSSSCC--------
T ss_pred CCCCcCHHhcccCHHHHHHHccceeECCCCCCCCEEeeHHHHHHHHHchhhhhhhccc
Confidence 999988633 34567788888888999999999999999999999999999887776
No 2
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.52 E-value=6.4e-08 Score=75.26 Aligned_cols=87 Identities=18% Similarity=0.314 Sum_probs=67.9
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcc
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPL 107 (311)
++.+||||++.+.++|.+.| +-.| +..|++++-+.. ...||+
T Consensus 22 ~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~~~-------------------------~~~CP~ 63 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSC------------KHLF-CRICILRCLKVM-------------------------GSYCPS 63 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTT------------SCEE-EHHHHHHHHHHT-------------------------CSBCTT
T ss_pred CCCCCCCCCcHhcCcEEcCC------------CCcc-cHHHHHHHHhHC-------------------------cCcCCC
Confidence 57899999999999998743 3334 567888887651 146999
Q ss_pred ccccccCEEE---cchhHHhhccccCcCcccCccccccHHHHHHhhhh
Q 021522 108 CRGEVTGWVV---ADKVRDYLNEKKRCCEEDQCTFAGTYLELRKHAQL 152 (311)
Q Consensus 108 CRGeVkGWtV---Ve~AR~~LN~K~RsC~~e~CsF~GtY~eLrKHar~ 152 (311)
||..+..-.+ .....+.++.-+-.|...+|.+.|+|.+|.+|.+.
T Consensus 64 Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~gC~~~~~~~~~~~H~~~ 111 (116)
T 1rmd_A 64 CRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEEVSLEKYNHHVSS 111 (116)
T ss_dssp TCCBCCGGGCBCCCHHHHHHHHHCEEECCSTTCCCEEEHHHHHHHHHT
T ss_pred CCCCCCHhhccccHHHHHHHHHHhcCCCCCCCCcchhhHhHHHHHHHH
Confidence 9999876443 34456667777788999999999999999999863
No 3
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.98 E-value=6.1e-06 Score=67.91 Aligned_cols=86 Identities=17% Similarity=0.308 Sum_probs=64.5
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcc
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPL 107 (311)
++.+||||++...++|.+.| +-.| ...|+.++-+... ..||+
T Consensus 17 ~~~~C~IC~~~~~~pv~~~C------------gH~f-C~~Ci~~~~~~~~-------------------------~~CP~ 58 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPC------------GHRF-CKACIIKSIRDAG-------------------------HKCPV 58 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTT------------SCEE-EHHHHHHHHHHHC-------------------------SBCTT
T ss_pred CCCCCCCCChhhcCcEECCC------------CCHH-HHHHHHHHHHhCC-------------------------CCCCC
Confidence 67899999999999987644 2222 2467777655411 27999
Q ss_pred ccccccCE--EEcchhHHhhccccCcCcccCccccccHHHHHHhhh
Q 021522 108 CRGEVTGW--VVADKVRDYLNEKKRCCEEDQCTFAGTYLELRKHAQ 151 (311)
Q Consensus 108 CRGeVkGW--tVVe~AR~~LN~K~RsC~~e~CsF~GtY~eLrKHar 151 (311)
||..+..- .....+++.|+.-+=.|...+|...++|.+|.+|.+
T Consensus 59 Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~GC~~~~~~~~l~~H~~ 104 (170)
T 3hcs_A 59 DNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQA 104 (170)
T ss_dssp TCCBCCGGGCEECHHHHHHHHTSEEECCSTTCCCEEEGGGHHHHHT
T ss_pred CccCcchhhhhhhHHHHHHHhhcccCCCCCCCCceecHhHHHHHHh
Confidence 99998763 234556677777778898899999999999999984
No 4
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.90 E-value=5.4e-06 Score=68.19 Aligned_cols=89 Identities=20% Similarity=0.329 Sum_probs=65.9
Q ss_pred CCccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccC
Q 021522 26 NWDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPAC 105 (311)
Q Consensus 26 eWedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~C 105 (311)
--++.+||||++...++|.+.| +-.| ...|+.++-+. ....|
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~C------------gH~F-C~~Ci~~~~~~-------------------------~~~~C 69 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQC------------GHRY-CSFCLASILSS-------------------------GPQNC 69 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTT------------SCEE-EHHHHHHHGGG-------------------------SCEEC
T ss_pred CCcCcCCCCCChhhcCcEECCC------------CCcc-CHHHHHHHHhc-------------------------CCCCC
Confidence 3467899999999999988643 3222 24688876531 11579
Q ss_pred cccccccc-----------CEEEcchhHHhhccccCcCcccCccccccHHHHHH-hhhh
Q 021522 106 PLCRGEVT-----------GWVVADKVRDYLNEKKRCCEEDQCTFAGTYLELRK-HAQL 152 (311)
Q Consensus 106 PLCRGeVk-----------GWtVVe~AR~~LN~K~RsC~~e~CsF~GtY~eLrK-Har~ 152 (311)
|+||.++. .......+++.|+.-+=.|...+|...|++.+|.. |...
T Consensus 70 P~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~v~Cpn~GC~~~~~l~~l~~~H~~~ 128 (141)
T 3knv_A 70 AACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKEYESCHEGR 128 (141)
T ss_dssp HHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSEEECCSTTCCCEEEHHHHHHHTTTC
T ss_pred CCCCCcccccccccccchhhhcccHHHHHHHcccccccCCCCCCCEeEHHHHHHHHHHH
Confidence 99999762 23345567778888888899999999999999998 8753
No 5
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.14 E-value=0.00025 Score=54.47 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=38.4
Q ss_pred CCccccccccccCCCceeeeecccCCCCCcccc------cCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCC
Q 021522 26 NWDDVTCPICLDFPHNGVLLLCSSYEKGCRPFV------CDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSED 99 (311)
Q Consensus 26 eWedvtCpICME~PHNAVLLlCSSh~KGCRPYM------CdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~ 99 (311)
..++..||||||.-.++++..=..-.++-.|.+ |+-. =|..||+++-+... .
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~---------------------~ 79 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGN---------------------K 79 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTC---------------------C
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHccc---------------------C
Confidence 345679999999876655311111112222322 4433 37899999975422 0
Q ss_pred CCCccCcccccccc
Q 021522 100 SCRPACPLCRGEVT 113 (311)
Q Consensus 100 ~~~L~CPLCRGeVk 113 (311)
.....||+||..+.
T Consensus 80 ~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 80 DGSLQCPSCKTIYG 93 (114)
T ss_dssp SSCCBCTTTCCBSS
T ss_pred CCCCcCCCCCCccC
Confidence 13478999997663
No 6
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.12 E-value=0.00046 Score=46.33 Aligned_cols=49 Identities=35% Similarity=0.750 Sum_probs=35.8
Q ss_pred CccccccccccCCCc----eeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCC
Q 021522 27 WDDVTCPICLDFPHN----GVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCR 102 (311)
Q Consensus 27 WedvtCpICME~PHN----AVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~ 102 (311)
.++..|||||+...+ .++|.| +-. =|..|++++-+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C------------gH~-fc~~Ci~~~~~~~-------------------------- 43 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPC------------GHL-LHRTCYEEMLKEG-------------------------- 43 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTT------------SCE-EETTHHHHHHHHT--------------------------
T ss_pred CCCCcCcccChhhcCCCcCeEecCC------------CCc-ccHHHHHHHHHcC--------------------------
Confidence 457789999998765 555544 322 2678999987641
Q ss_pred ccCccccccccC
Q 021522 103 PACPLCRGEVTG 114 (311)
Q Consensus 103 L~CPLCRGeVkG 114 (311)
..||+||.+|.|
T Consensus 44 ~~CP~Cr~~~~g 55 (55)
T 2ecm_A 44 YRCPLCSGPSSG 55 (55)
T ss_dssp CCCTTSCCSSCC
T ss_pred CcCCCCCCcCCC
Confidence 469999999987
No 7
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.12 E-value=0.00022 Score=54.67 Aligned_cols=49 Identities=22% Similarity=0.526 Sum_probs=36.9
Q ss_pred CccccccccccCCCceee-eecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccC
Q 021522 27 WDDVTCPICLDFPHNGVL-LLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPAC 105 (311)
Q Consensus 27 WedvtCpICME~PHNAVL-LlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~C 105 (311)
-++.+||||++.+.++|+ +.| +-.| +..|+.++-+... ..|
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~C------------gH~F-C~~Ci~~~~~~~~-------------------------~~C 61 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHC------------SKLC-CFSCIRRWLTEQR-------------------------AQC 61 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTT------------CCEE-EHHHHHHHHHHTC-------------------------SBC
T ss_pred CCCCCCccCCccccCccccCCC------------CChh-hHHHHHHHHHHCc-------------------------CCC
Confidence 378999999999999998 543 3333 5678887765421 579
Q ss_pred cccccccc
Q 021522 106 PLCRGEVT 113 (311)
Q Consensus 106 PLCRGeVk 113 (311)
|+||..+.
T Consensus 62 P~Cr~~~~ 69 (100)
T 3lrq_A 62 PHCRAPLQ 69 (100)
T ss_dssp TTTCCBCC
T ss_pred CCCCCcCC
Confidence 99999985
No 8
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.12 E-value=0.00022 Score=55.93 Aligned_cols=49 Identities=24% Similarity=0.575 Sum_probs=37.3
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcc
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPL 107 (311)
++.+||||++...++|.|.| +-+| +..|+.++-+. ....||+
T Consensus 51 ~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~~-------------------------~~~~CP~ 92 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVC------------QHNV-CKDCLDRSFRA-------------------------QVFSCPA 92 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTT------------SCEE-EHHHHHHHHHT-------------------------TCCBCTT
T ss_pred cCCCCCcCChHHcCcEEeeC------------CCcc-cHHHHHHHHhH-------------------------CcCCCCC
Confidence 67899999999999999843 4344 45799888761 1157999
Q ss_pred ccccccC
Q 021522 108 CRGEVTG 114 (311)
Q Consensus 108 CRGeVkG 114 (311)
||..+..
T Consensus 93 Cr~~~~~ 99 (124)
T 3fl2_A 93 CRYDLGR 99 (124)
T ss_dssp TCCBCCT
T ss_pred CCccCCC
Confidence 9999865
No 9
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.07 E-value=0.00046 Score=49.92 Aligned_cols=37 Identities=24% Similarity=0.589 Sum_probs=27.9
Q ss_pred CccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHh
Q 021522 27 WDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNA 75 (311)
Q Consensus 27 WedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka 75 (311)
-++.+||||++...++|+|.+ |+-.| +..|++++-+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~-----------CgH~f-C~~Ci~~~~~~ 49 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPC-----------CGNSY-CDECIRTALLE 49 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSS-----------SCCEE-CTTHHHHHHHH
T ss_pred CCCCCCcCCChHHhCCeEcCC-----------CCCHH-HHHHHHHHHHh
Confidence 368899999999999999862 22222 45799988775
No 10
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.04 E-value=0.00059 Score=54.84 Aligned_cols=52 Identities=23% Similarity=0.675 Sum_probs=37.5
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcc
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPL 107 (311)
++.+||||++...++|+|.| +-.| +..|+.++-+. ...||+
T Consensus 52 ~~~~C~iC~~~~~~~~~~~C------------gH~f-c~~Ci~~~~~~--------------------------~~~CP~ 92 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNC------------AHSF-CSYCINEWMKR--------------------------KIECPI 92 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETT------------SCEE-EHHHHHHHTTT--------------------------CSBCTT
T ss_pred ccCCCcccCcccCCceECCC------------CCCc-cHHHHHHHHHc--------------------------CCcCCC
Confidence 45789999999999999854 3333 45787765321 135999
Q ss_pred ccccccCEEEc
Q 021522 108 CRGEVTGWVVA 118 (311)
Q Consensus 108 CRGeVkGWtVV 118 (311)
||..|....+.
T Consensus 93 Cr~~~~~~~~~ 103 (138)
T 4ayc_A 93 CRKDIKSKTYS 103 (138)
T ss_dssp TCCBCCCEEEC
T ss_pred CCCcCCCCCCc
Confidence 99999887653
No 11
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.04 E-value=0.00096 Score=47.14 Aligned_cols=51 Identities=29% Similarity=0.703 Sum_probs=36.1
Q ss_pred CccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCc
Q 021522 27 WDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACP 106 (311)
Q Consensus 27 WedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CP 106 (311)
-++..||||++...++|+|.| +-.| +..|+.++.+. ......||
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~C------------gH~f-C~~Ci~~~~~~-----------------------~~~~~~CP 61 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDC------------GHNF-CLKCITQIGET-----------------------SCGFFKCP 61 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTT------------CCEE-EHHHHHHHCSS-----------------------SCSCCCCS
T ss_pred ccCCEeccCCcccCCeEEcCC------------CChh-hHHHHHHHHHc-----------------------CCCCCCCC
Confidence 367899999999999999854 2221 45677776441 01346899
Q ss_pred ccccccc
Q 021522 107 LCRGEVT 113 (311)
Q Consensus 107 LCRGeVk 113 (311)
+||..|.
T Consensus 62 ~Cr~~~~ 68 (73)
T 2ysl_A 62 LCKTSVR 68 (73)
T ss_dssp SSCCCCC
T ss_pred CCCCcCC
Confidence 9999875
No 12
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.01 E-value=0.00053 Score=49.06 Aligned_cols=50 Identities=20% Similarity=0.408 Sum_probs=37.6
Q ss_pred CccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCc
Q 021522 27 WDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACP 106 (311)
Q Consensus 27 WedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CP 106 (311)
-++.+||||++.+.++|.|. .|+-.| +..|+.++-+. . ..||
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~-----------~CgH~f-C~~Ci~~~~~~-----~---------------------~~CP 54 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTIT-----------ECLHTF-CKSCIVRHFYY-----S---------------------NRCP 54 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECS-----------SSCCEE-CHHHHHHHHHH-----C---------------------SSCT
T ss_pred CCCCCCCCCChHHHCcCEEC-----------CCCCHH-HHHHHHHHHHc-----C---------------------CcCC
Confidence 46889999999999998872 144444 57899888754 0 4699
Q ss_pred cccccccC
Q 021522 107 LCRGEVTG 114 (311)
Q Consensus 107 LCRGeVkG 114 (311)
+||..|.-
T Consensus 55 ~Cr~~~~~ 62 (72)
T 2djb_A 55 KCNIVVHQ 62 (72)
T ss_dssp TTCCCCCS
T ss_pred CcCcccCc
Confidence 99998864
No 13
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=96.96 E-value=0.00036 Score=50.99 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.4
Q ss_pred CCccccccccccCCCceeeeec
Q 021522 26 NWDDVTCPICLDFPHNGVLLLC 47 (311)
Q Consensus 26 eWedvtCpICME~PHNAVLLlC 47 (311)
--++..|+|||+.+.++|+|-|
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pC 42 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPC 42 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETT
T ss_pred CccCCCCCCCCCCCCCEEEcCC
Confidence 3467899999999999999977
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.93 E-value=0.00094 Score=47.64 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=19.9
Q ss_pred cCCccccccccccCCCceeeeec
Q 021522 25 TNWDDVTCPICLDFPHNGVLLLC 47 (311)
Q Consensus 25 keWedvtCpICME~PHNAVLLlC 47 (311)
...++..||||++.+.++|+|.|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~C 33 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPC 33 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETT
T ss_pred cCCCCCCCccCCcccCCCEEccC
Confidence 46788999999999999999854
No 15
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.84 E-value=0.0011 Score=47.34 Aligned_cols=53 Identities=26% Similarity=0.605 Sum_probs=38.0
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcc
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPL 107 (311)
++..||||++...++|+|.| +-.| +..|+.++-+.... ......||+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~~~~~--------------------~~~~~~CP~ 64 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADC------------NHSF-CRACITLNYESNRN--------------------TDGKGNCPV 64 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTT------------SCCB-CHHHHHHHHHHSBC--------------------TTSCBCCTT
T ss_pred cCCCCcCCChhhCcceeCCC------------CCHH-HHHHHHHHHHhccC--------------------CCCCCCCCC
Confidence 57899999999999997754 2222 35788887765320 123478999
Q ss_pred cccccc
Q 021522 108 CRGEVT 113 (311)
Q Consensus 108 CRGeVk 113 (311)
||..+.
T Consensus 65 Cr~~~~ 70 (85)
T 2ecw_A 65 CRVPYP 70 (85)
T ss_dssp TCCCCC
T ss_pred CCCcCC
Confidence 999875
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.83 E-value=0.00069 Score=49.34 Aligned_cols=50 Identities=24% Similarity=0.401 Sum_probs=37.9
Q ss_pred CCccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccC
Q 021522 26 NWDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPAC 105 (311)
Q Consensus 26 eWedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~C 105 (311)
.-++..||||++...++|+|.| +-.| +..|+.++-+. ...|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~~--------------------------~~~C 52 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKC------------RHYF-CESCALEHFRA--------------------------TPRC 52 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTT------------SCEE-EHHHHHHHHHH--------------------------CSBC
T ss_pred CCCCCCCcCCCchhcCeeEccC------------CCHh-HHHHHHHHHHC--------------------------CCcC
Confidence 4467899999999999998744 3334 56788887653 1469
Q ss_pred ccccccccC
Q 021522 106 PLCRGEVTG 114 (311)
Q Consensus 106 PLCRGeVkG 114 (311)
|+||..|.+
T Consensus 53 P~Cr~~~~~ 61 (81)
T 2csy_A 53 YICDQPTGG 61 (81)
T ss_dssp SSSCCBCCS
T ss_pred CCcCccccc
Confidence 999999974
No 17
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.82 E-value=0.00047 Score=48.43 Aligned_cols=48 Identities=17% Similarity=0.460 Sum_probs=36.1
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcc
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPL 107 (311)
++.+||||++...++|+|. |+-.| +..|++++-+. ....||+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~------------CgH~f-C~~Ci~~~~~~-------------------------~~~~CP~ 55 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTE------------CGHRF-CESCMAALLSS-------------------------SSPKCTA 55 (66)
T ss_dssp CCEECTTTCCEESSCCCCS------------SSCCC-CHHHHHHHHTT-------------------------SSCCCTT
T ss_pred cCCCCCCCChHhcCeeECC------------CCCHH-HHHHHHHHHHh-------------------------CcCCCCC
Confidence 5789999999999999864 44444 56898888641 1256999
Q ss_pred cccccc
Q 021522 108 CRGEVT 113 (311)
Q Consensus 108 CRGeVk 113 (311)
||..|.
T Consensus 56 Cr~~~~ 61 (66)
T 2ecy_A 56 CQESIV 61 (66)
T ss_dssp TCCCCC
T ss_pred CCcCCC
Confidence 999875
No 18
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.81 E-value=0.00043 Score=49.48 Aligned_cols=55 Identities=24% Similarity=0.527 Sum_probs=35.8
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcc
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPL 107 (311)
++.+||||++...++|+|.| +-.| +..|+.++-+... . .......||+
T Consensus 11 ~~~~C~IC~~~~~~p~~l~C------------gH~f-C~~Ci~~~~~~~~---~----------------~~~~~~~CP~ 58 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDC------------GHSL-CRACITVSNKEAV---T----------------SMGGKSSCPV 58 (79)
T ss_dssp CCCEETTTTEECSSCCCCSS------------SCCC-CHHHHSCCCCCCS---S----------------SCCCCCCCSS
T ss_pred cCCCCcCCCcccCCeeECCC------------CCHH-HHHHHHHHHHhcc---c----------------CCCCCCcCCC
Confidence 57899999999999988744 3333 3456665432210 0 0124578999
Q ss_pred ccccccC
Q 021522 108 CRGEVTG 114 (311)
Q Consensus 108 CRGeVkG 114 (311)
||..+.-
T Consensus 59 Cr~~~~~ 65 (79)
T 2egp_A 59 CGISYSF 65 (79)
T ss_dssp SCCCCCS
T ss_pred CCCcCCH
Confidence 9999863
No 19
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.80 E-value=0.00085 Score=50.88 Aligned_cols=51 Identities=29% Similarity=0.655 Sum_probs=37.6
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcc
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPL 107 (311)
++..||||++.+.++|+|. |+-.| +..|+.++-+... ....||+
T Consensus 20 ~~~~C~IC~~~~~~p~~~~------------CgH~f-C~~Ci~~~~~~~~-----------------------~~~~CP~ 63 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTK------------CDHIF-CKFCMLKLLNQKK-----------------------GPSQCPL 63 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCT------------TSCCC-CSHHHHHHHHSSS-----------------------SSCCCTT
T ss_pred CCCCCcccChhhcCeEECC------------CCCHH-HHHHHHHHHHhCC-----------------------CCCCCcC
Confidence 4678999999999999874 44444 5679988876421 1268999
Q ss_pred ccccccC
Q 021522 108 CRGEVTG 114 (311)
Q Consensus 108 CRGeVkG 114 (311)
||..+..
T Consensus 64 Cr~~~~~ 70 (112)
T 1jm7_A 64 CKNDITK 70 (112)
T ss_dssp TSCCCCT
T ss_pred CCCcCCH
Confidence 9998764
No 20
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.78 E-value=0.00055 Score=56.11 Aligned_cols=49 Identities=27% Similarity=0.647 Sum_probs=36.4
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcc
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPL 107 (311)
++.+||||++...++|.|+ -|+-.| +..|++++-+. ....||+
T Consensus 53 ~~~~C~IC~~~~~~p~~~~-----------~CgH~f-C~~Ci~~~~~~-------------------------~~~~CP~ 95 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTK-----------ECLHRF-CADCIITALRS-------------------------GNKECPT 95 (165)
T ss_dssp HHHBCTTTSSBCSSEEEET-----------TTCCEE-EHHHHHHHHHT-------------------------TCCBCTT
T ss_pred CCCCCcccChHhhCcCEeC-----------CCCChh-HHHHHHHHHHh-------------------------CcCCCCC
Confidence 6779999999999999883 233333 56788888652 0156999
Q ss_pred cccccc
Q 021522 108 CRGEVT 113 (311)
Q Consensus 108 CRGeVk 113 (311)
||..|.
T Consensus 96 Cr~~~~ 101 (165)
T 2ckl_B 96 CRKKLV 101 (165)
T ss_dssp TCCBCC
T ss_pred CCCcCC
Confidence 999984
No 21
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.70 E-value=0.0019 Score=46.26 Aligned_cols=52 Identities=27% Similarity=0.657 Sum_probs=36.7
Q ss_pred ccccccccccCCCceeee--ecccCCCCCccc-ccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCcc
Q 021522 28 DDVTCPICLDFPHNGVLL--LCSSYEKGCRPF-VCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPA 104 (311)
Q Consensus 28 edvtCpICME~PHNAVLL--lCSSh~KGCRPY-MCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~ 104 (311)
++..|+||||.|-|+|+| -| .-. .| ..|.++..+. ...
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pC-------gH~~~C------~~C~~~~~~~--------------------------~~~ 47 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKT-------GHLMAC------FTCAKKLKKR--------------------------NKP 47 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTE-------EEEEEC------HHHHHHHHHT--------------------------TCC
T ss_pred CcCCCCcCCCCCCCEEEECCCC-------CChhhH------HHHHHHHHHc--------------------------CCc
Confidence 567899999999999987 44 221 22 2577777642 036
Q ss_pred CccccccccCEEEc
Q 021522 105 CPLCRGEVTGWVVA 118 (311)
Q Consensus 105 CPLCRGeVkGWtVV 118 (311)
||+||..|.....+
T Consensus 48 CPiCR~~i~~~i~i 61 (64)
T 2vje_A 48 CPVCRQPIQMIVLT 61 (64)
T ss_dssp CTTTCCCCCEEEEE
T ss_pred CCCcCcchhceEee
Confidence 99999999876543
No 22
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.67 E-value=0.00096 Score=49.37 Aligned_cols=50 Identities=24% Similarity=0.580 Sum_probs=35.4
Q ss_pred CccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCc
Q 021522 27 WDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACP 106 (311)
Q Consensus 27 WedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CP 106 (311)
-++.+||||++...++|+|.| |+-+| ...|+.++-+.. ....||
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~-----------CgH~f-C~~Ci~~~~~~~------------------------~~~~CP 54 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPC-----------CGNSY-CDECIRTALLES------------------------DEHTCP 54 (92)
T ss_dssp CTTTEETTTTEECSSCEECTT-----------TCCEE-CHHHHHHHHHHC------------------------TTCCCT
T ss_pred CcCCCCCCCChhhcCceECCC-----------CCCHH-HHHHHHHHHHhc------------------------CCCcCc
Confidence 367899999999999999862 22222 245887775531 126899
Q ss_pred cccccc
Q 021522 107 LCRGEV 112 (311)
Q Consensus 107 LCRGeV 112 (311)
+||..+
T Consensus 55 ~Cr~~~ 60 (92)
T 3ztg_A 55 TCHQND 60 (92)
T ss_dssp TTCCSS
T ss_pred CCCCcC
Confidence 999986
No 23
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.57 E-value=0.0026 Score=45.43 Aligned_cols=54 Identities=30% Similarity=0.649 Sum_probs=38.2
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcc
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPL 107 (311)
++..||||++...++|+|.| +-.| +..|+.++-+.... ......||+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~~~~~--------------------~~~~~~CP~ 64 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDC------------GHSF-CQACLTANHKKSML--------------------DKGESSCPV 64 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSS------------SCCB-CTTHHHHHHHHHHH--------------------TTSCCCCTT
T ss_pred CCCCCCCCCcccCCceeCCC------------CCHH-HHHHHHHHHHHhhc--------------------CCCCCcCCC
Confidence 67899999999999988744 3333 45799887665210 012478999
Q ss_pred ccccccC
Q 021522 108 CRGEVTG 114 (311)
Q Consensus 108 CRGeVkG 114 (311)
||..+.-
T Consensus 65 Cr~~~~~ 71 (85)
T 2ecv_A 65 CRISYQP 71 (85)
T ss_dssp TCCSSCS
T ss_pred CCCccCH
Confidence 9998863
No 24
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.55 E-value=0.00075 Score=49.15 Aligned_cols=20 Identities=30% Similarity=0.693 Sum_probs=18.2
Q ss_pred ccccccccccCCCceeeeec
Q 021522 28 DDVTCPICLDFPHNGVLLLC 47 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlC 47 (311)
++.+|+|||+.+.++|+|-|
T Consensus 24 ~~~~C~IC~~~~~~~~~~pC 43 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPC 43 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSS
T ss_pred CCCCCCcCCCCCCCEEEecC
Confidence 67789999999999999877
No 25
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=96.54 E-value=0.00057 Score=52.82 Aligned_cols=20 Identities=30% Similarity=0.757 Sum_probs=17.9
Q ss_pred ccccccccccCCCceeeeec
Q 021522 28 DDVTCPICLDFPHNGVLLLC 47 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlC 47 (311)
++.+||||++...++|.|.|
T Consensus 14 ~~~~C~iC~~~~~~p~~~~C 33 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPC 33 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTT
T ss_pred CCCCCccCCcccCceeEcCC
Confidence 68899999999999999855
No 26
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=96.52 E-value=0.0017 Score=45.65 Aligned_cols=49 Identities=27% Similarity=0.601 Sum_probs=33.9
Q ss_pred CccccccccccCC---CceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCc
Q 021522 27 WDDVTCPICLDFP---HNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRP 103 (311)
Q Consensus 27 WedvtCpICME~P---HNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L 103 (311)
=++..|+||++.- ...++|. |+-.| |..|+.++-+.. .
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~------------C~H~f-c~~Ci~~~~~~~--------------------------~ 52 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP------------CMHLF-HQVCVDQWLITN--------------------------K 52 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT------------TSCEE-EHHHHHHHHHHC--------------------------S
T ss_pred CCCCCCeeCCccccCCCcEEEeC------------CCCHH-HHHHHHHHHHcC--------------------------C
Confidence 3567899998765 4455554 44443 688999987641 1
Q ss_pred cCccccccccC
Q 021522 104 ACPLCRGEVTG 114 (311)
Q Consensus 104 ~CPLCRGeVkG 114 (311)
.||+||..|..
T Consensus 53 ~CP~Cr~~~~~ 63 (69)
T 2kiz_A 53 KCPICRVDIEA 63 (69)
T ss_dssp BCTTTCSBSCS
T ss_pred CCcCcCccccC
Confidence 39999998864
No 27
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.51 E-value=0.0013 Score=49.23 Aligned_cols=21 Identities=19% Similarity=0.561 Sum_probs=18.4
Q ss_pred ccccccccccCCCceeeeecc
Q 021522 28 DDVTCPICLDFPHNGVLLLCS 48 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCS 48 (311)
++..|+|||+.+.++|+|-|-
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCg 37 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCG 37 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTC
T ss_pred CCCEeEEeCcccCcEEEECCC
Confidence 567899999999999999763
No 28
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.51 E-value=0.0059 Score=46.72 Aligned_cols=49 Identities=18% Similarity=0.564 Sum_probs=35.7
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcc
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPL 107 (311)
++.+||||++..-++|.|+ -|+-+| +..|+.++-+. ...||+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~-----------~CgH~f-C~~Ci~~~~~~--------------------------~~~CP~ 55 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTII-----------ECLHSF-CKTCIVRYLET--------------------------SKYCPI 55 (108)
T ss_dssp GGTBCTTTSSBCSSEEEET-----------TTCCEE-EHHHHHHHHTS--------------------------CSBCTT
T ss_pred CcCCCccCChHHhCcCEeC-----------CCCChh-hHHHHHHHHHh--------------------------CCcCcC
Confidence 6789999999999999872 133333 45677766432 156999
Q ss_pred ccccccC
Q 021522 108 CRGEVTG 114 (311)
Q Consensus 108 CRGeVkG 114 (311)
||..+..
T Consensus 56 Cr~~~~~ 62 (108)
T 2ckl_A 56 CDVQVHK 62 (108)
T ss_dssp TCCBSCS
T ss_pred CCccccc
Confidence 9999874
No 29
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.49 E-value=0.003 Score=45.80 Aligned_cols=52 Identities=23% Similarity=0.509 Sum_probs=37.9
Q ss_pred CccccccccccCCCc----eeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCC
Q 021522 27 WDDVTCPICLDFPHN----GVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCR 102 (311)
Q Consensus 27 WedvtCpICME~PHN----AVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~ 102 (311)
-++..||||++...+ .|+|.|. -.| |..|++++.+... ..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~Cg------------H~f-C~~Ci~~~~~~~~-----------------------~~ 56 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCG------------HTI-CRQCLEKLLASSI-----------------------NG 56 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSS------------CEE-EHHHHHHHHHHCS-----------------------SC
T ss_pred cCCCCCccCCccccccCCCeEECCCC------------Chh-hHHHHHHHHHcCC-----------------------CC
Confidence 367889999999998 8887652 212 5689998877521 23
Q ss_pred ccCccccccccC
Q 021522 103 PACPLCRGEVTG 114 (311)
Q Consensus 103 L~CPLCRGeVkG 114 (311)
..||+||..+.-
T Consensus 57 ~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 57 VRCPFCSKITRI 68 (88)
T ss_dssp BCCTTTCCCBCC
T ss_pred cCCCCCCCcccc
Confidence 689999998764
No 30
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.47 E-value=0.0025 Score=44.53 Aligned_cols=51 Identities=35% Similarity=0.690 Sum_probs=36.4
Q ss_pred ccccccccccCCCce-eeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCc
Q 021522 28 DDVTCPICLDFPHNG-VLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACP 106 (311)
Q Consensus 28 edvtCpICME~PHNA-VLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CP 106 (311)
++..||||++.+.+. ++|.| +-.| |..|+.++-+.. ..||
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C------------~H~f-c~~Ci~~~~~~~--------------------------~~CP 44 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPC------------LHAF-CYVCITRWIRQN--------------------------PTCP 44 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTT------------TEEE-STTHHHHHHHHS--------------------------CSTT
T ss_pred CCCCCeeCCccccCCcEecCC------------CCee-HHHHHHHHHhCc--------------------------CcCc
Confidence 356899999999985 55543 3222 568999876431 2699
Q ss_pred cccccccCEEE
Q 021522 107 LCRGEVTGWVV 117 (311)
Q Consensus 107 LCRGeVkGWtV 117 (311)
+||..|..+..
T Consensus 45 ~Cr~~~~~~~~ 55 (68)
T 1chc_A 45 LCKVPVESVVH 55 (68)
T ss_dssp TTCCCCCCEEC
T ss_pred CCChhhHhhhh
Confidence 99999998753
No 31
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.46 E-value=0.0031 Score=45.00 Aligned_cols=53 Identities=25% Similarity=0.627 Sum_probs=36.4
Q ss_pred cccccccccCCCceeeeecccCCCCCccc-ccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcc
Q 021522 29 DVTCPICLDFPHNGVLLLCSSYEKGCRPF-VCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (311)
Q Consensus 29 dvtCpICME~PHNAVLLlCSSh~KGCRPY-MCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPL 107 (311)
+..|+||||.|-|+|||.- .|.-. .| ..|..++++. ...||+
T Consensus 7 ~~~C~IC~~~~~~~~~~~~-----pCgH~~~C------~~C~~~~~~~--------------------------~~~CPi 49 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHG-----RTGHLVTC------FHCARRLKKA--------------------------GASCPI 49 (63)
T ss_dssp GSBCTTTSSSBSCEEEEET-----TEEEEEEC------HHHHHHHHHT--------------------------TCBCTT
T ss_pred CCCCcccCCcCCCeEEEec-----CCCCHhHH------HHHHHHHHHh--------------------------CCcCCC
Confidence 4579999999999998821 12221 22 3677777642 036999
Q ss_pred ccccccCEEEc
Q 021522 108 CRGEVTGWVVA 118 (311)
Q Consensus 108 CRGeVkGWtVV 118 (311)
||..|.....+
T Consensus 50 CR~~i~~~i~i 60 (63)
T 2vje_B 50 CKKEIQLVIKV 60 (63)
T ss_dssp TCCBCCEEEEE
T ss_pred cCchhhceEEE
Confidence 99999876654
No 32
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.43 E-value=0.0012 Score=47.33 Aligned_cols=37 Identities=22% Similarity=0.617 Sum_probs=24.8
Q ss_pred CCccccccccccCCCce---eeeecccCCCCCcccccCCCCCccchHHHHHHh
Q 021522 26 NWDDVTCPICLDFPHNG---VLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNA 75 (311)
Q Consensus 26 eWedvtCpICME~PHNA---VLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka 75 (311)
.-++..|+|||+...+. +.|.| +-. =|..|++++-+.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C------------~H~-fh~~Ci~~w~~~ 59 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPC------------NHE-FHAKCVDKWLKA 59 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETT------------TEE-EETTHHHHHHHH
T ss_pred cCCCCCCeECCcccCCCCeEEEECC------------CCH-hHHHHHHHHHHc
Confidence 34678999999765554 55544 222 368899998754
No 33
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.36 E-value=0.0011 Score=45.88 Aligned_cols=48 Identities=31% Similarity=0.607 Sum_probs=35.0
Q ss_pred CccccccccccCCCce-------eeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCC
Q 021522 27 WDDVTCPICLDFPHNG-------VLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSED 99 (311)
Q Consensus 27 WedvtCpICME~PHNA-------VLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~ 99 (311)
-++..||||++...+. |+|.|. -.| |..|++++-+. .
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg------------H~f-c~~Ci~~~~~~-----~------------------ 56 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECG------------HVF-CSQCLRDSLKN-----A------------------ 56 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSS------------CEE-EHHHHHHHHHH-----C------------------
T ss_pred CCCCCCcccCccccccccccCCeEeCCCC------------Chh-cHHHHHHHHHc-----C------------------
Confidence 3678999999998776 777652 222 67899988753 0
Q ss_pred CCCccCcccccccc
Q 021522 100 SCRPACPLCRGEVT 113 (311)
Q Consensus 100 ~~~L~CPLCRGeVk 113 (311)
..||+||.+|.
T Consensus 57 ---~~CP~Cr~~~~ 67 (69)
T 2ea6_A 57 ---NTCPTCRKKIN 67 (69)
T ss_dssp ---SSCTTTCCCCC
T ss_pred ---CCCCCCCCccC
Confidence 36999998874
No 34
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.32 E-value=0.0022 Score=46.76 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=18.2
Q ss_pred ccccccccccCCCceeeeecc
Q 021522 28 DDVTCPICLDFPHNGVLLLCS 48 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCS 48 (311)
++..|+|||+.|-+.|||-|-
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCg 34 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCR 34 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTT
T ss_pred CCCCCCCcCcCCCCEEEECCC
Confidence 467899999999999999763
No 35
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=96.30 E-value=0.002 Score=43.34 Aligned_cols=34 Identities=29% Similarity=0.735 Sum_probs=22.6
Q ss_pred ccccccccccCCCc---eeeeecccCCCCCcccccCCCCCccchHHHHH
Q 021522 28 DDVTCPICLDFPHN---GVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFK 73 (311)
Q Consensus 28 edvtCpICME~PHN---AVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFk 73 (311)
++..|+|||+...+ .+.|. . |+-. =|..|++++-
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~------~-----C~H~-f~~~Ci~~w~ 40 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLP------R-----CGHG-FHAECVDMWL 40 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECS------S-----SCCE-ECTTHHHHTT
T ss_pred CCCcCccCCccccCCCceEECC------C-----CCCc-ccHHHHHHHH
Confidence 45789999998766 55554 1 3322 3678998774
No 36
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.30 E-value=0.0016 Score=45.24 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.1
Q ss_pred CCccccccccccCCCceeeeecc
Q 021522 26 NWDDVTCPICLDFPHNGVLLLCS 48 (311)
Q Consensus 26 eWedvtCpICME~PHNAVLLlCS 48 (311)
+.++.+||||++...+.|+|.|.
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~Cg 25 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCL 25 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTS
T ss_pred cccCCCceEeCCccCCeEEcCCC
Confidence 56889999999999999998774
No 37
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.29 E-value=0.0041 Score=47.13 Aligned_cols=57 Identities=21% Similarity=0.458 Sum_probs=39.4
Q ss_pred CCccccccccccC--CCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCc
Q 021522 26 NWDDVTCPICLDF--PHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRP 103 (311)
Q Consensus 26 eWedvtCpICME~--PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L 103 (311)
+-++..|+||++. +-+.++|-| .|+-. .-+-|..||+|+-+... +.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC-----~C~Gs---~h~fH~~Cl~~Wl~~~~------------------------~~ 59 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPC-----HCTGS---LHFVHQACLQQWIKSSD------------------------TR 59 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSS-----SCCSS---SCCEETTHHHHHHHHHC------------------------CS
T ss_pred CCCCCCCeEcCccccCCCeeEecc-----ccCCc---CCeeCHHHHHHHHhhCC------------------------CC
Confidence 4567899999963 356666655 22211 25679999999987632 26
Q ss_pred cCccccccccC
Q 021522 104 ACPLCRGEVTG 114 (311)
Q Consensus 104 ~CPLCRGeVkG 114 (311)
.|||||.++.-
T Consensus 60 ~CplCr~~~~~ 70 (80)
T 2d8s_A 60 CCELCKYEFIM 70 (80)
T ss_dssp BCSSSCCBCCC
T ss_pred CCCCCCCeeec
Confidence 79999998753
No 38
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.28 E-value=0.0015 Score=44.56 Aligned_cols=48 Identities=31% Similarity=0.611 Sum_probs=35.0
Q ss_pred ccccccccccCCCce-------eeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCC
Q 021522 28 DDVTCPICLDFPHNG-------VLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDS 100 (311)
Q Consensus 28 edvtCpICME~PHNA-------VLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~ 100 (311)
++..||||++...+. |++.|. -. =|..|++++-+. .
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg------------H~-fc~~Ci~~~~~~-----~------------------- 44 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG------------HV-FCSQCLRDSLKN-----A------------------- 44 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS------------CE-EEHHHHHHHHHH-----C-------------------
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC------------Cc-hhHHHHHHHHHc-----C-------------------
Confidence 578999999988775 677653 12 167899988754 0
Q ss_pred CCccCccccccccC
Q 021522 101 CRPACPLCRGEVTG 114 (311)
Q Consensus 101 ~~L~CPLCRGeVkG 114 (311)
..||+||..+..
T Consensus 45 --~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 45 --NTCPTCRKKINH 56 (64)
T ss_dssp --SBCTTTCCBCTT
T ss_pred --CCCCCCCccCCc
Confidence 379999998763
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.28 E-value=0.0019 Score=53.45 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=37.2
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcc
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPL 107 (311)
++.+||||++...++|+|.| +-+| +..|+.++-+. ....||+
T Consensus 77 ~~~~C~IC~~~~~~pv~~~C------------gH~f-C~~Ci~~~~~~-------------------------~~~~CP~ 118 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTEC------------FHNV-CKDCLQRSFKA-------------------------QVFSCPA 118 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTT------------SCEE-EHHHHHHHHHT-------------------------TCCBCTT
T ss_pred cCCEeecCChhhcCCEEcCC------------CCch-hHHHHHHHHHh-------------------------CCCcCCC
Confidence 56799999999999999754 3223 35788887763 1157999
Q ss_pred ccccccCE
Q 021522 108 CRGEVTGW 115 (311)
Q Consensus 108 CRGeVkGW 115 (311)
||..+...
T Consensus 119 Cr~~~~~~ 126 (150)
T 1z6u_A 119 CRHDLGQN 126 (150)
T ss_dssp TCCBCCTT
T ss_pred CCccCCCC
Confidence 99998754
No 40
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=96.27 E-value=0.0015 Score=45.80 Aligned_cols=50 Identities=30% Similarity=0.564 Sum_probs=36.5
Q ss_pred CCccccccccccCCCce-------eeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCC
Q 021522 26 NWDDVTCPICLDFPHNG-------VLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSE 98 (311)
Q Consensus 26 eWedvtCpICME~PHNA-------VLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~ 98 (311)
..++..||||++...+. |+|.|. -. -|..|++++-+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg------------H~-fc~~Ci~~~~~~~---------------------- 51 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECG------------HV-FCSQCLRDSLKNA---------------------- 51 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTS------------CE-EEHHHHHHHHHHC----------------------
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCC------------Ch-HhHHHHHHHHHcC----------------------
Confidence 45788999999998776 676552 22 2678999886531
Q ss_pred CCCCccCccccccccC
Q 021522 99 DSCRPACPLCRGEVTG 114 (311)
Q Consensus 99 ~~~~L~CPLCRGeVkG 114 (311)
..||+||..+..
T Consensus 52 ----~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 52 ----NTCPTCRKKINH 63 (71)
T ss_dssp ----SBCTTTCCBCCC
T ss_pred ----CCCCCCCCccCh
Confidence 369999998863
No 41
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.25 E-value=0.0027 Score=45.19 Aligned_cols=48 Identities=25% Similarity=0.549 Sum_probs=32.5
Q ss_pred ccccccccccCCCce---eeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCcc
Q 021522 28 DDVTCPICLDFPHNG---VLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPA 104 (311)
Q Consensus 28 edvtCpICME~PHNA---VLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~ 104 (311)
++..|+|||+...+. ++|. |+-. =|..|++++-+.. ..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~------------C~H~-f~~~Ci~~~~~~~--------------------------~~ 54 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICP------------CKHA-FHRKCLIKWLEVR--------------------------KV 54 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEET------------TTEE-EEHHHHHHHHHHC--------------------------SB
T ss_pred CCCCCcCCCcccCCCCcEEEcC------------CCCE-ecHHHHHHHHHcC--------------------------Cc
Confidence 467899999985443 3333 3322 2678999987541 25
Q ss_pred CccccccccC
Q 021522 105 CPLCRGEVTG 114 (311)
Q Consensus 105 CPLCRGeVkG 114 (311)
||+||.+|..
T Consensus 55 CP~Cr~~~~~ 64 (74)
T 2ep4_A 55 CPLCNMPVLQ 64 (74)
T ss_dssp CTTTCCBCSS
T ss_pred CCCcCccccc
Confidence 9999998865
No 42
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.22 E-value=0.0016 Score=61.16 Aligned_cols=21 Identities=29% Similarity=0.721 Sum_probs=19.0
Q ss_pred CccccccccccCCCceeeeec
Q 021522 27 WDDVTCPICLDFPHNGVLLLC 47 (311)
Q Consensus 27 WedvtCpICME~PHNAVLLlC 47 (311)
-++..|||||+.+.++|+|-|
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpC 313 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPC 313 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETT
T ss_pred cCCCCCCccCCcCCceEEcCC
Confidence 367899999999999999977
No 43
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=96.03 E-value=0.0022 Score=48.26 Aligned_cols=48 Identities=25% Similarity=0.603 Sum_probs=33.0
Q ss_pred CccccccccccCCCc---eeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCc
Q 021522 27 WDDVTCPICLDFPHN---GVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRP 103 (311)
Q Consensus 27 WedvtCpICME~PHN---AVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L 103 (311)
-++..|+|||+...+ .+.|.| +-. =|..|++++-+. ..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C------------~H~-Fh~~Ci~~wl~~--------------------------~~ 78 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPC------------HHY-FHKPCVSIWLQK--------------------------SG 78 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETT------------TEE-EEHHHHHHHHTT--------------------------TC
T ss_pred CCCCCCcccChhhcCCCcEEecCC------------CCh-HHHHHHHHHHHc--------------------------CC
Confidence 467899999987665 555544 322 367899988532 02
Q ss_pred cCcccccccc
Q 021522 104 ACPLCRGEVT 113 (311)
Q Consensus 104 ~CPLCRGeVk 113 (311)
.||+||..|.
T Consensus 79 ~CP~Cr~~~~ 88 (91)
T 2l0b_A 79 TCPVCRCMFP 88 (91)
T ss_dssp BCTTTCCBSS
T ss_pred cCcCcCccCC
Confidence 6999999874
No 44
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.01 E-value=0.0034 Score=44.23 Aligned_cols=48 Identities=31% Similarity=0.835 Sum_probs=34.0
Q ss_pred CccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCc
Q 021522 27 WDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACP 106 (311)
Q Consensus 27 WedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CP 106 (311)
-++..||||++.+.+ |+|.|. -. -|..|++++.+ ....||
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~Cg------------H~-fc~~Ci~~~~~--------------------------~~~~CP 52 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCA------------HS-FCQKCIDKWSD--------------------------RHRNCP 52 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTT------------EE-ECHHHHHHSSC--------------------------CCSSCH
T ss_pred CCCCCCeeCCcCccC-cccCCC------------Cc-ccHHHHHHHHH--------------------------CcCcCC
Confidence 467899999999999 887762 11 15678776532 125699
Q ss_pred cccccccC
Q 021522 107 LCRGEVTG 114 (311)
Q Consensus 107 LCRGeVkG 114 (311)
+||..|..
T Consensus 53 ~Cr~~~~~ 60 (70)
T 2ecn_A 53 ICRLQMTG 60 (70)
T ss_dssp HHHHCTTC
T ss_pred CcCCcccC
Confidence 99998874
No 45
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.99 E-value=0.0025 Score=44.59 Aligned_cols=49 Identities=24% Similarity=0.501 Sum_probs=31.8
Q ss_pred cccccccccc-CCCce----eeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCC
Q 021522 28 DDVTCPICLD-FPHNG----VLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCR 102 (311)
Q Consensus 28 edvtCpICME-~PHNA----VLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~ 102 (311)
++.+||||++ ..-|+ |++.| +-.| +..|++++... ..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~C------------gH~f-C~~Ci~~~~~~-------------------------~~ 43 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVC------------GHTL-CESCVDLLFVR-------------------------GA 43 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTT------------CCCE-EHHHHHHHHHT-------------------------TS
T ss_pred CCCcCCcCCCCccCCCccCeecCCC------------CCHh-HHHHHHHHHHc-------------------------CC
Confidence 6789999999 44444 34433 3333 56788887542 01
Q ss_pred ccCccccccccC
Q 021522 103 PACPLCRGEVTG 114 (311)
Q Consensus 103 L~CPLCRGeVkG 114 (311)
..||+||..+..
T Consensus 44 ~~CP~Cr~~~~~ 55 (65)
T 1g25_A 44 GNCPECGTPLRK 55 (65)
T ss_dssp SSCTTTCCCCSS
T ss_pred CcCCCCCCcccc
Confidence 479999998864
No 46
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=95.95 E-value=0.0046 Score=46.53 Aligned_cols=49 Identities=27% Similarity=0.662 Sum_probs=35.6
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcc
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPL 107 (311)
++.+||||++...++|.|. -|+-+| +..|+.++.+. ...||+
T Consensus 21 ~~~~C~IC~~~~~~p~~~~-----------~CgH~f-C~~Ci~~~~~~--------------------------~~~CP~ 62 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIP-----------QCSHNY-CSLCIRKFLSY--------------------------KTQCPT 62 (99)
T ss_dssp HHTBCTTTCSBCSSEEECT-----------TTCCEE-EHHHHHHHHTT--------------------------CCBCTT
T ss_pred CCCCcccCChhhCCcCEEC-----------CCCCHh-hHHHHHHHHHC--------------------------CCCCCC
Confidence 5689999999999999883 133222 46788877642 147999
Q ss_pred ccccccC
Q 021522 108 CRGEVTG 114 (311)
Q Consensus 108 CRGeVkG 114 (311)
||..+..
T Consensus 63 Cr~~~~~ 69 (99)
T 2y43_A 63 CCVTVTE 69 (99)
T ss_dssp TCCBCCG
T ss_pred CCCcCCh
Confidence 9999874
No 47
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=95.95 E-value=0.0075 Score=43.24 Aligned_cols=49 Identities=16% Similarity=0.429 Sum_probs=34.4
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcc
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPL 107 (311)
++.+||||++...+.|+|.| +-+| +..|+.++-+. ....||+
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~C------------gH~f-c~~Ci~~~~~~-------------------------~~~~CP~ 48 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVST------------GQTY-ERSSIQKWLDA-------------------------GHKTCPK 48 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETT------------TEEE-EHHHHHHHHTT-------------------------TCCBCTT
T ss_pred ccCCCCCccccccCCEEcCC------------CCee-cHHHHHHHHHH-------------------------CcCCCCC
Confidence 57899999999999999844 3222 24566666531 1257999
Q ss_pred ccccccC
Q 021522 108 CRGEVTG 114 (311)
Q Consensus 108 CRGeVkG 114 (311)
||..+..
T Consensus 49 C~~~~~~ 55 (78)
T 1t1h_A 49 SQETLLH 55 (78)
T ss_dssp TCCBCSS
T ss_pred CcCCCCh
Confidence 9998864
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.80 E-value=0.0035 Score=48.88 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.4
Q ss_pred CccccccccccCCCceeee-ec
Q 021522 27 WDDVTCPICLDFPHNGVLL-LC 47 (311)
Q Consensus 27 WedvtCpICME~PHNAVLL-lC 47 (311)
-++.+||||++...++|+| .|
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~C 41 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGC 41 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSS
T ss_pred hhCCCCCCCChHhhCccEeCCC
Confidence 3688999999999999998 55
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=95.73 E-value=0.0093 Score=44.78 Aligned_cols=12 Identities=33% Similarity=0.775 Sum_probs=10.3
Q ss_pred ccCccccccccC
Q 021522 103 PACPLCRGEVTG 114 (311)
Q Consensus 103 L~CPLCRGeVkG 114 (311)
..||+||..+..
T Consensus 51 ~~CP~CR~~~~~ 62 (78)
T 1e4u_A 51 GLCPACRKPYPE 62 (78)
T ss_dssp SBCTTTCCBCSS
T ss_pred CCCCCCCCccCC
Confidence 679999998875
No 50
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.72 E-value=0.0058 Score=43.85 Aligned_cols=49 Identities=27% Similarity=0.645 Sum_probs=32.4
Q ss_pred ccccccccccCCCc---eeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCcc
Q 021522 28 DDVTCPICLDFPHN---GVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPA 104 (311)
Q Consensus 28 edvtCpICME~PHN---AVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~ 104 (311)
++..|+|||+.-.+ .++|. |+-.| |..|+.++-+. ...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~------------C~H~f-c~~Ci~~~~~~--------------------------~~~ 54 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLP------------CNHLF-HDSCIVPWLEQ--------------------------HDS 54 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECT------------TSCEE-ETTTTHHHHTT--------------------------TCS
T ss_pred CCCCCeeCCccccCCCCEEEeC------------CCCee-cHHHHHHHHHc--------------------------CCc
Confidence 56789999876543 34444 33322 67899888532 036
Q ss_pred CccccccccCE
Q 021522 105 CPLCRGEVTGW 115 (311)
Q Consensus 105 CPLCRGeVkGW 115 (311)
||+||.+|..-
T Consensus 55 CP~Cr~~~~~~ 65 (78)
T 2ect_A 55 CPVCRKSLTGQ 65 (78)
T ss_dssp CTTTCCCCCCS
T ss_pred CcCcCCccCCc
Confidence 99999998763
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.72 E-value=0.0072 Score=58.32 Aligned_cols=51 Identities=24% Similarity=0.547 Sum_probs=39.0
Q ss_pred ccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcccc
Q 021522 30 VTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPLCR 109 (311)
Q Consensus 30 vtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPLCR 109 (311)
..|+||||.+-++|++-|. -.+ +..|+.++.+. ....||+||
T Consensus 333 ~~C~ICle~~~~pv~lpCG------------H~F-C~~Ci~~wl~~-------------------------~~~~CP~CR 374 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCG------------HLM-CTSCLTSWQES-------------------------EGQGCPFCR 374 (389)
T ss_dssp SBCTTTSSSBCCEEEETTC------------CEE-CHHHHHHHHHH-------------------------TCSBCTTTC
T ss_pred CCCCccCcCCCCeEEeCCC------------Chh-hHHHHHHHHhc-------------------------CCCCCCCCC
Confidence 6899999999999998763 222 46799988763 014699999
Q ss_pred ccccCEEEc
Q 021522 110 GEVTGWVVA 118 (311)
Q Consensus 110 GeVkGWtVV 118 (311)
..|..-.++
T Consensus 375 ~~i~~~~~i 383 (389)
T 2y1n_A 375 CEIKGTEPI 383 (389)
T ss_dssp CBCCEEEEC
T ss_pred CccCCceeE
Confidence 999886654
No 52
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.91 E-value=0.015 Score=43.05 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=11.1
Q ss_pred ccccccccccCCCc
Q 021522 28 DDVTCPICLDFPHN 41 (311)
Q Consensus 28 edvtCpICME~PHN 41 (311)
++.+|+|||+.=.+
T Consensus 14 ~~~~C~IC~~~~~~ 27 (81)
T 2ecl_A 14 ECDTCAICRVQVMD 27 (81)
T ss_dssp CCSCBTTTTBCTTS
T ss_pred CCCCCcccChhhhc
Confidence 57889999987654
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=94.58 E-value=0.0082 Score=45.87 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=26.4
Q ss_pred CccccccccccCCCce-------eeeecccCCCCCcccccCCCCCccchHHHHHHh
Q 021522 27 WDDVTCPICLDFPHNG-------VLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNA 75 (311)
Q Consensus 27 WedvtCpICME~PHNA-------VLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka 75 (311)
-++.+||||+|..-+. |+|.| +-.| |..|++++-+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~C------------gH~f-c~~Ci~~~~~~ 47 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTEC------------GHVF-CSQCLRDSLKN 47 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETT------------CCEE-EHHHHHHHHTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCC------------CChh-hHHHHHHHHHh
Confidence 4678999999987665 88765 3323 67899998653
No 54
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.99 E-value=0.03 Score=38.64 Aligned_cols=36 Identities=28% Similarity=0.711 Sum_probs=27.7
Q ss_pred CccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHh
Q 021522 27 WDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNA 75 (311)
Q Consensus 27 WedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka 75 (311)
-++.+||||++...++|+|.| +-.| +..|+.++.+.
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~~ 53 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDC------------GHNF-CLKCITQIGET 53 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTT------------SSEE-CHHHHHHHHHH
T ss_pred ccCCCCCcCCchhCCeEEeCC------------CCcc-hHHHHHHHHHc
Confidence 367899999999999999854 3222 45799888774
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=93.85 E-value=0.019 Score=43.83 Aligned_cols=47 Identities=32% Similarity=0.651 Sum_probs=34.3
Q ss_pred ccccccccccCCCce-------eeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCC
Q 021522 28 DDVTCPICLDFPHNG-------VLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDS 100 (311)
Q Consensus 28 edvtCpICME~PHNA-------VLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~ 100 (311)
++..||||++...+. |++.|. -.-|.+|++++-+..
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-------------H~fc~~Ci~~~~~~~------------------------ 113 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECG-------------HVFCSQCLRDSLKNA------------------------ 113 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTS-------------BEEEHHHHHHHHHHC------------------------
T ss_pred CCCCCCCCCCccccccccCcceEeCCCC-------------ChhhHHHHHHHHHcC------------------------
Confidence 567899999987664 777773 124678998887641
Q ss_pred CCccCcccccccc
Q 021522 101 CRPACPLCRGEVT 113 (311)
Q Consensus 101 ~~L~CPLCRGeVk 113 (311)
..||+||..|.
T Consensus 114 --~~CP~Cr~~~~ 124 (133)
T 4ap4_A 114 --NTCPTCRKKIN 124 (133)
T ss_dssp --SBCTTTCCBCC
T ss_pred --CCCCCCCCcCC
Confidence 37999998875
No 56
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=92.57 E-value=0.075 Score=42.09 Aligned_cols=45 Identities=22% Similarity=0.566 Sum_probs=23.5
Q ss_pred ccccccccccCCCceeeeecc-----cCCCCCccc--ccCCCCCccchHHHHHH
Q 021522 28 DDVTCPICLDFPHNGVLLLCS-----SYEKGCRPF--VCDTDHLHSNCLDRFKN 74 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCS-----Sh~KGCRPY--MCdTS~RHSNCLDQFkk 74 (311)
++.+|+||++.=....+ .|- +...+|... -|+-. =|..|++++-+
T Consensus 36 ~~d~CaIC~~~~~~~c~-~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~ 87 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCI-ECQANQASATSEECTVAWGVCNHA-FHFHCISRWLK 87 (106)
T ss_dssp CSCCCSSSCSCTTSCCT-THHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHT
T ss_pred CCCCCccCChhHhCcCc-hhhccccccCCccceEeecccCcE-ECHHHHHHHHH
Confidence 57799999987554311 111 112222211 14433 47889998854
No 57
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=92.37 E-value=0.031 Score=43.33 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.0
Q ss_pred CccccccccccCCCceeeeecc
Q 021522 27 WDDVTCPICLDFPHNGVLLLCS 48 (311)
Q Consensus 27 WedvtCpICME~PHNAVLLlCS 48 (311)
=++.+||||++...+.|+|-|.
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG 41 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSS 41 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTT
T ss_pred cHhcCCcCccccccCCeECCCC
Confidence 4788999999999999999876
No 58
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.91 E-value=0.056 Score=36.19 Aligned_cols=35 Identities=20% Similarity=0.693 Sum_probs=25.8
Q ss_pred CccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHH
Q 021522 27 WDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKN 74 (311)
Q Consensus 27 WedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkk 74 (311)
-++..||||++...++|+|.| +-.| +..|+.++-+
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~ 47 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIEC------------GHNF-CKACITRWWE 47 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSS------------CCCC-CHHHHHHHTT
T ss_pred ccCCCCccCCcccCccEeCCC------------CCcc-CHHHHHHHHH
Confidence 367899999999999988754 3333 4678887743
No 59
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=91.17 E-value=0.18 Score=46.82 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=27.7
Q ss_pred cCccccccccCCccccccccccCCCceeee-ec
Q 021522 16 CDMEDVQLNTNWDDVTCPICLDFPHNGVLL-LC 47 (311)
Q Consensus 16 ~~~ed~~l~keWedvtCpICME~PHNAVLL-lC 47 (311)
.+-+|+......++.+||||++...+.|.+ .|
T Consensus 168 ~dDDDI~v~~~~~el~CPIcl~~f~DPVts~~C 200 (267)
T 3htk_C 168 ADEDDLQIEGGKIELTCPITCKPYEAPLISRKC 200 (267)
T ss_dssp TCSSCCCCCSSBCCSBCTTTSSBCSSEEEESSS
T ss_pred CCCccceecCCceeeECcCccCcccCCeeeCCC
Confidence 344699999999999999999999999986 44
No 60
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=91.00 E-value=0.1 Score=37.53 Aligned_cols=51 Identities=25% Similarity=0.523 Sum_probs=35.7
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCC--CCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccC
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDT--DHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPAC 105 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdT--S~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~C 105 (311)
+...|.||++-..+.+++-| .|.. .|-|..||++..+..+ +..|
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC----------~C~gs~~~~H~~Cl~~W~~~~~------------------------~~~C 50 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRAC----------GCTGELENVHRSCLSTWLTISR------------------------NTAC 50 (60)
T ss_dssp SCCEETTTTEECSCCCCCSC----------CCSSGGGSCCHHHHHHHHHHHT------------------------CSBC
T ss_pred CCCEeEEeecCCCCceecCc----------CCCCchhhhHHHHHHHHHHhCC------------------------CCcc
Confidence 46789999987766544333 2322 3789999999987532 2579
Q ss_pred ccccccc
Q 021522 106 PLCRGEV 112 (311)
Q Consensus 106 PLCRGeV 112 (311)
|||+-+.
T Consensus 51 ~~C~~~~ 57 (60)
T 1vyx_A 51 QICGVVY 57 (60)
T ss_dssp TTTCCBC
T ss_pred CCCCCee
Confidence 9999764
No 61
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=89.77 E-value=0.068 Score=40.06 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=19.3
Q ss_pred CCccccccccccCCCceeeeec
Q 021522 26 NWDDVTCPICLDFPHNGVLLLC 47 (311)
Q Consensus 26 eWedvtCpICME~PHNAVLLlC 47 (311)
-=++.+||||++...+.|++-|
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~c 32 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPS 32 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTT
T ss_pred CchheECcccCchhcCCeECCC
Confidence 3478999999999999999865
No 62
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=88.31 E-value=0.15 Score=39.53 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=18.9
Q ss_pred CccccccccccCCCceeeeec
Q 021522 27 WDDVTCPICLDFPHNGVLLLC 47 (311)
Q Consensus 27 WedvtCpICME~PHNAVLLlC 47 (311)
=++.+||||++...+.|+|-|
T Consensus 27 p~~~~CpI~~~~m~dPV~~~c 47 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPS 47 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETT
T ss_pred cHhhCCcCccCcccCCeECCC
Confidence 378899999999999999975
No 63
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.77 E-value=0.31 Score=36.87 Aligned_cols=34 Identities=24% Similarity=0.713 Sum_probs=23.5
Q ss_pred ccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHh
Q 021522 30 VTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNA 75 (311)
Q Consensus 30 vtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka 75 (311)
..|.||.+.=+.. +-|. .|+..| |..|+++|-+.
T Consensus 16 ~~C~IC~~~i~~g---------~~C~--~C~h~f-H~~Ci~kWl~~ 49 (74)
T 2ct0_A 16 KICNICHSLLIQG---------QSCE--TCGIRM-HLPCVAKYFQS 49 (74)
T ss_dssp CBCSSSCCBCSSS---------EECS--SSCCEE-CHHHHHHHSTT
T ss_pred CcCcchhhHcccC---------CccC--CCCchh-hHHHHHHHHHh
Confidence 6899999876643 3344 554433 89999999653
No 64
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=83.74 E-value=1.1 Score=43.68 Aligned_cols=69 Identities=17% Similarity=0.470 Sum_probs=41.7
Q ss_pred cCCccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCcc
Q 021522 25 TNWDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPA 104 (311)
Q Consensus 25 keWedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~ 104 (311)
++=....|+||++.=+.. -.--+|-|.-=-|+-. =|+.||.+.-++...+..+ -....-.
T Consensus 304 ~ee~~~ECaICys~~l~~----g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqS---------------Fnvi~G~ 363 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDG----GEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTF---------------LEVSFGQ 363 (381)
T ss_dssp CCCSCCSCSSSCCSSCTT----CCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCT---------------TTCCEEE
T ss_pred cccCCccCcccceeecCC----CCCccccccCCccCCc-cchHHHHHHHHhCCCcccc---------------ccccCCC
Confidence 344567899999986531 1112233333334433 4899999988875533211 1345578
Q ss_pred Ccccccccc
Q 021522 105 CPLCRGEVT 113 (311)
Q Consensus 105 CPLCRGeVk 113 (311)
||+||.+|.
T Consensus 364 CPyCr~pIs 372 (381)
T 3k1l_B 364 CPFCKAKLS 372 (381)
T ss_dssp CTTTCCEEE
T ss_pred CCCCCCcCC
Confidence 999998764
No 65
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=83.36 E-value=0.32 Score=41.26 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=18.6
Q ss_pred CccccccccccCCCceeeeec
Q 021522 27 WDDVTCPICLDFPHNGVLLLC 47 (311)
Q Consensus 27 WedvtCpICME~PHNAVLLlC 47 (311)
-++.+||||++...+.|.+.|
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~ 226 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPS 226 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSS
T ss_pred CcccCCcCcCCHhcCCeECCC
Confidence 367899999999999999865
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=82.62 E-value=0.27 Score=39.96 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=1.0
Q ss_pred ccccccccccCCCc
Q 021522 28 DDVTCPICLDFPHN 41 (311)
Q Consensus 28 edvtCpICME~PHN 41 (311)
++.+|+|||+.=..
T Consensus 47 ~~d~CaICl~~~~~ 60 (117)
T 4a0k_B 47 VVDNCAICRNHIMD 60 (117)
T ss_dssp CC------------
T ss_pred CCCcCeECChhhcC
Confidence 45699999987443
No 67
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=79.77 E-value=0.47 Score=40.77 Aligned_cols=29 Identities=17% Similarity=0.411 Sum_probs=23.1
Q ss_pred ccCcCcc--cCccccccHHHHHHhhhhhCCC
Q 021522 128 KKRCCEE--DQCTFAGTYLELRKHAQLEHPH 156 (311)
Q Consensus 128 K~RsC~~--e~CsF~GtY~eLrKHar~~HP~ 156 (311)
++-+|.. ..|+|+|+|++|-.|.+..|..
T Consensus 35 ~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~ 65 (193)
T 2a25_A 35 RPYSCPCPGASCKWQGSLDAVMPHLMHQHKS 65 (193)
T ss_dssp -CEECCCC--CCCCEECSTTHHHHHHHHCTT
T ss_pred CCccCCCCCCCCcCCCCHHHHHHHHHHHCCC
Confidence 3445555 5699999999999999999985
No 68
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=78.78 E-value=1.2 Score=29.92 Aligned_cols=20 Identities=30% Similarity=0.217 Sum_probs=17.0
Q ss_pred cccccHHHHHHhhhhhCCCC
Q 021522 138 TFAGTYLELRKHAQLEHPHS 157 (311)
Q Consensus 138 sF~GtY~eLrKHar~~HP~a 157 (311)
..-+++.+|..|...+|+..
T Consensus 13 ~~l~s~~~L~~Hye~~H~~~ 32 (34)
T 3mjh_B 13 KSLGSADELFKHYEAVHDAG 32 (34)
T ss_dssp CEESSHHHHHHHHHHHTSSS
T ss_pred HHcCCHHHHHHHHHhccccC
Confidence 34589999999999999864
No 69
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.44 E-value=1.1 Score=33.72 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=26.1
Q ss_pred ccccccccccCCCceeeee-cccCCCCCcccccCCCCCccchHHHHHHhh
Q 021522 28 DDVTCPICLDFPHNGVLLL-CSSYEKGCRPFVCDTDHLHSNCLDRFKNAY 76 (311)
Q Consensus 28 edvtCpICME~PHNAVLLl-CSSh~KGCRPYMCdTS~RHSNCLDQFkka~ 76 (311)
++.+||||++...+.|.+. | +-+|- -.|+.+|-+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~c------------Gh~f~-r~cI~~~l~~~ 42 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVC------------GHTYE-EDAIVRMIESR 42 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSS------------CCEEE-HHHHHHHHHHH
T ss_pred cEeECcCcCchhcCCEEcCCC------------CCeec-HHHHHHHHHHc
Confidence 5688999999999999984 5 22222 35777777654
No 70
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.73 E-value=1.4 Score=32.68 Aligned_cols=56 Identities=18% Similarity=0.408 Sum_probs=32.2
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcc
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPL 107 (311)
+..+||||||.--..+++.-. +|-=.-| ..|+.+|-+...... ....+.||.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~----~CgH~FC------~~Cl~~~~~~~i~~g------------------~~~~i~CP~ 55 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIA----QCQCIFC------TLCLKQYVELLIKEG------------------LETAISCPD 55 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEET----TTTEEEE------HHHHHHHHHHHHHHC------------------SCCCEECSC
T ss_pred CCcCCcccCcccccccceEcC----CCCCccc------HHHHHHHHHHHhhcC------------------CcccccCcc
Confidence 567999999875554443210 2221222 368888877632111 113478999
Q ss_pred --cccc
Q 021522 108 --CRGE 111 (311)
Q Consensus 108 --CRGe 111 (311)
|+..
T Consensus 56 ~~C~~~ 61 (94)
T 1wim_A 56 AACPKQ 61 (94)
T ss_dssp TTCSSC
T ss_pred ccCCCC
Confidence 9976
No 71
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=72.16 E-value=1.2 Score=33.39 Aligned_cols=20 Identities=25% Similarity=0.662 Sum_probs=16.5
Q ss_pred cccccccccc-CCCceee--eec
Q 021522 28 DDVTCPICLD-FPHNGVL--LLC 47 (311)
Q Consensus 28 edvtCpICME-~PHNAVL--LlC 47 (311)
|+++|+||++ ++..||. |.|
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C 24 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTC 24 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTT
T ss_pred CCCCCcCCCCCCCCCceEECCcC
Confidence 6799999996 5889997 655
No 72
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.62 E-value=3.7 Score=31.05 Aligned_cols=48 Identities=19% Similarity=0.401 Sum_probs=33.7
Q ss_pred ccccCccccccccCC--ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHH
Q 021522 13 LIACDMEDVQLNTNW--DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLD 70 (311)
Q Consensus 13 ~~~~~~ed~~l~keW--edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLD 70 (311)
++.+.-.+=+.+..| .+-.|.||....+..-||+|- .|+..| |-.||+
T Consensus 8 ~~~~~c~~C~~~~~w~C~~c~C~vC~~~~~~~~ll~CD---------~C~~~y-H~~Cl~ 57 (77)
T 2e6s_A 8 RNDTECDLCGGDPEKKCHSCSCRVCGGKHEPNMQLLCD---------ECNVAY-HIYCLN 57 (77)
T ss_dssp CCCCCCTTTCSCSSSCCSSSSCSSSCCCCCSTTEEECS---------SSCCEE-ETTSSS
T ss_pred cCCccChhhcCCCCeECCCCCCcCcCCcCCCCCEEEcC---------CCCccc-cccccC
Confidence 344443344455678 455899999988888999998 466666 888875
No 73
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=60.12 E-value=3.1 Score=35.98 Aligned_cols=35 Identities=6% Similarity=0.036 Sum_probs=25.8
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHh
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNA 75 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka 75 (311)
++.+||||++...+.|++-| +.+|-. .|+.++-+.
T Consensus 105 ~~f~CPI~~elm~DPV~~~~------------Ghtfer-~~I~~~l~~ 139 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPS------------GITYDR-KDIEEHLQR 139 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTT------------SCEEEH-HHHHHHHHH
T ss_pred HhhcccCccccCCCCeECCC------------CCEECH-HHHHHHHHh
Confidence 78899999999999999954 333333 466666654
No 74
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=58.81 E-value=5 Score=30.39 Aligned_cols=34 Identities=29% Similarity=0.542 Sum_probs=14.7
Q ss_pred ccccCcCcccCcccc-ccHHHHHHhhhhhCCCCCC
Q 021522 126 NEKKRCCEEDQCTFA-GTYLELRKHAQLEHPHSRP 159 (311)
Q Consensus 126 N~K~RsC~~e~CsF~-GtY~eLrKHar~~HP~arP 159 (311)
+.|+-.|..+.|... .+...|.+|++..|...+|
T Consensus 94 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~ 128 (155)
T 2gli_A 94 GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128 (155)
T ss_dssp TCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCC
T ss_pred CCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence 344444444444332 2334455555444544443
No 75
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=47.49 E-value=14 Score=27.22 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=46.1
Q ss_pred CCccCccccccccCEEEc-----------chhHHhhccc-------cCcCcccCcccc--ccHHHHHHhhhhhCCCCCCC
Q 021522 101 CRPACPLCRGEVTGWVVA-----------DKVRDYLNEK-------KRCCEEDQCTFA--GTYLELRKHAQLEHPHSRPS 160 (311)
Q Consensus 101 ~~L~CPLCRGeVkGWtVV-----------e~AR~~LN~K-------~RsC~~e~CsF~--GtY~eLrKHar~~HP~arP~ 160 (311)
..+.||+|-..+.+-..+ +-.++|+..| +-.|+..+|... =+..++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~l----------- 72 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECM----------- 72 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHH-----------
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHH-----------
Confidence 457899999887764322 3457777754 358999999988 667777655
Q ss_pred CCCchhHHHHHHhhhhhh
Q 021522 161 KIDPARQLDWENFQQSSE 178 (311)
Q Consensus 161 eVDP~rq~~W~~lE~ere 178 (311)
+++....+|+++-.++.
T Consensus 73 -l~~~~~~ky~~~~~~~~ 89 (94)
T 1wim_A 73 -VAAEIMQRYKKLQFERS 89 (94)
T ss_dssp -SCHHHHHHHHHHHHHSS
T ss_pred -CCHHHHHHHHHHHHHhh
Confidence 35677778887665554
No 76
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}
Probab=47.28 E-value=10 Score=26.94 Aligned_cols=27 Identities=22% Similarity=0.564 Sum_probs=22.4
Q ss_pred ccCcCcccCccccc-cHHHHHHhhhhhC
Q 021522 128 KKRCCEEDQCTFAG-TYLELRKHAQLEH 154 (311)
Q Consensus 128 K~RsC~~e~CsF~G-tY~eLrKHar~~H 154 (311)
+.-.|.-++|.+.| ...+|..|+|.+|
T Consensus 37 ~~~~C~W~~C~~~~~~~~~L~~Hir~~H 64 (64)
T 1zw8_A 37 EPLACNWEDCDFLGDDTASIVNHINAQH 64 (64)
T ss_dssp CCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred CCCEeeCCCCcCCCCChHHHHhhccccC
Confidence 36689999999754 4679999999998
No 77
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=42.22 E-value=24 Score=27.50 Aligned_cols=47 Identities=21% Similarity=0.459 Sum_probs=27.5
Q ss_pred chhHHhhccccCcCcccCcccccc----------HHHHHHhhhhhCCCCCCCCCCchhHHHH---HHhhhhh
Q 021522 119 DKVRDYLNEKKRCCEEDQCTFAGT----------YLELRKHAQLEHPHSRPSKIDPARQLDW---ENFQQSS 177 (311)
Q Consensus 119 e~AR~~LN~K~RsC~~e~CsF~Gt----------Y~eLrKHar~~HP~arP~eVDP~rq~~W---~~lE~er 177 (311)
+.++-...+.+.-|.. +|-|-|| |+++.+|.+.+ +.+.+| ++|++|-
T Consensus 6 ~~~~~q~pe~~~lC~n-gCGFfGnpaT~nlCSkCyrd~~~k~~q~-----------q~~~~~~~~~~~~~~~ 65 (74)
T 2c7n_A 6 ERRGIHVDQSDLLCKK-GCGYYGNPAWQGFCSKCWREEYHKARQK-----------QIQEDWELAERLQREE 65 (74)
T ss_dssp ------------CCTT-CSSSCCCGGGTTCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCcchhHHh-CCCCCCChhhcCccHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 3444455667777866 9999998 88987777776 688999 5666653
No 78
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.59 E-value=14 Score=22.54 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=24.9
Q ss_pred HHhhccccCcCcccCcccc-ccHHHHHHhhhhhCCCCCCCC
Q 021522 122 RDYLNEKKRCCEEDQCTFA-GTYLELRKHAQLEHPHSRPSK 161 (311)
Q Consensus 122 R~~LN~K~RsC~~e~CsF~-GtY~eLrKHar~~HP~arP~e 161 (311)
|.+.+.|+-.|....|... ..-..|++|++. |...+|-+
T Consensus 5 ~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k~~~ 44 (48)
T 2ent_A 5 SSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-HSGVKPSG 44 (48)
T ss_dssp CSSCCCCCEECCSSSCCCEESSHHHHHHHHTT-SCCCCSCS
T ss_pred CCcCCCCCeECCCCCCCCccCCHHHHHHHHHH-hCCCCCCC
Confidence 3445566666765456543 345789999876 87777743
No 79
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=36.63 E-value=11 Score=28.27 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=10.0
Q ss_pred CCccCccccccc
Q 021522 101 CRPACPLCRGEV 112 (311)
Q Consensus 101 ~~L~CPLCRGeV 112 (311)
.-|+||.|.|..
T Consensus 9 eiL~CP~ck~~L 20 (67)
T 2jny_A 9 EVLACPKDKGPL 20 (67)
T ss_dssp CCCBCTTTCCBC
T ss_pred HHhCCCCCCCcC
Confidence 349999999975
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=36.18 E-value=11 Score=25.52 Aligned_cols=31 Identities=29% Similarity=0.754 Sum_probs=24.1
Q ss_pred ccccccccCCCceeeeecccCCCCCcccccCCCCCccchHH
Q 021522 30 VTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLD 70 (311)
Q Consensus 30 vtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLD 70 (311)
|.|.||-..-...-||+|- .|+..| |-.||+
T Consensus 1 a~C~vC~~~~~~~~ll~Cd---------~C~~~~-H~~Cl~ 31 (51)
T 1f62_A 1 ARCKVCRKKGEDDKLILCD---------ECNKAF-HLFCLR 31 (51)
T ss_dssp CCCTTTCCSSCCSCCEECT---------TTCCEE-CHHHHC
T ss_pred CCCCCCCCCCCCCCEEECC---------CCChhh-CcccCC
Confidence 5799999887778899997 356555 788886
No 81
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=36.03 E-value=15 Score=26.00 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=15.1
Q ss_pred ccccccccCCCceeeee
Q 021522 30 VTCPICLDFPHNGVLLL 46 (311)
Q Consensus 30 vtCpICME~PHNAVLLl 46 (311)
..||||++...|.|++.
T Consensus 4 ~~CpIs~~~m~dPV~~~ 20 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSP 20 (61)
T ss_dssp CCCTTTCSCCSSEEEET
T ss_pred EEecCCCCCCCCCEEeC
Confidence 47999999999999884
No 82
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.45 E-value=24 Score=23.81 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=22.5
Q ss_pred ccCcCcccCcccc-ccHHHHHHhhhhhCCCCCCC
Q 021522 128 KKRCCEEDQCTFA-GTYLELRKHAQLEHPHSRPS 160 (311)
Q Consensus 128 K~RsC~~e~CsF~-GtY~eLrKHar~~HP~arP~ 160 (311)
|+-.|. .|... .+-..|.+|++..|+...|+
T Consensus 44 ~~~~C~--~C~~~f~~~~~L~~H~~~~H~~~~p~ 75 (77)
T 2ct1_A 44 AKFHCP--HCDTVIARKSDLGVHLRKQHSYSGPS 75 (77)
T ss_dssp SSEECS--SSSCEESSHHHHHHHHHHTSCCSCCC
T ss_pred CccCCC--CCCCccCCHHHHHHHHHHhCCCCCCC
Confidence 344454 36544 35678999999999999996
No 83
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=33.73 E-value=45 Score=25.03 Aligned_cols=53 Identities=28% Similarity=0.348 Sum_probs=35.2
Q ss_pred CccCcc--ccccccCEE-Ecchh-HHhhccccCcCcccCcccc-ccHHHHHHhhhhhC
Q 021522 102 RPACPL--CRGEVTGWV-VADKV-RDYLNEKKRCCEEDQCTFA-GTYLELRKHAQLEH 154 (311)
Q Consensus 102 ~L~CPL--CRGeVkGWt-VVe~A-R~~LN~K~RsC~~e~CsF~-GtY~eLrKHar~~H 154 (311)
...|++ |--...-.. +..-. +.+.+.|+-.|....|... .+-..|++|++..|
T Consensus 97 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hh 154 (155)
T 2gli_A 97 PYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154 (155)
T ss_dssp CEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred CeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence 478998 854332221 12222 4566778888988778765 45679999999876
No 84
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.26 E-value=11 Score=28.86 Aligned_cols=37 Identities=19% Similarity=0.550 Sum_probs=24.9
Q ss_pred cccCCccccccccccCCC--ceeeeecccCCCCCcccccCCCCCccchHH
Q 021522 23 LNTNWDDVTCPICLDFPH--NGVLLLCSSYEKGCRPFVCDTDHLHSNCLD 70 (311)
Q Consensus 23 l~keWedvtCpICME~PH--NAVLLlCSSh~KGCRPYMCdTS~RHSNCLD 70 (311)
+.++ ++..|.||...=. ...||+|- .|+..| |-.||+
T Consensus 11 ~~~e-~~~~C~vC~~~~~~~~~~ll~CD---------~C~~~y-H~~Cl~ 49 (88)
T 1wev_A 11 FAME-MGLACVVCRQMTVASGNQLVECQ---------ECHNLY-HQDCHK 49 (88)
T ss_dssp CHHH-HCCSCSSSCCCCCCTTCCEEECS---------SSCCEE-ETTTSS
T ss_pred ccCC-CCCcCCCCCCCCCCCCCceEECC---------CCCCeE-cCccCC
Confidence 3344 5788999987633 35788886 366666 777754
No 85
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=33.21 E-value=64 Score=22.16 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=34.2
Q ss_pred CccCccccccccCEE-EcchhHHhhccccCcCcccCcccc-ccHHHHHHhhhhhCCCCCCC
Q 021522 102 RPACPLCRGEVTGWV-VADKVRDYLNEKKRCCEEDQCTFA-GTYLELRKHAQLEHPHSRPS 160 (311)
Q Consensus 102 ~L~CPLCRGeVkGWt-VVe~AR~~LN~K~RsC~~e~CsF~-GtY~eLrKHar~~HP~arP~ 160 (311)
...|+.|--...-.. +..-.+.+...|+-.|.. |... .+-..|.+|++.-|....|+
T Consensus 36 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~p~ 94 (96)
T 2dmd_A 36 PYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI--CPYASRNSSQLTVHLRSHTGDSGPS 94 (96)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHSCCCCCEECSS--SSCEESSHHHHHHHHTTCCSCCCCC
T ss_pred CEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCC--CCCccCCHHHHHHHHHHhcCCCCCC
Confidence 478999964432211 122333444566666765 5443 36679999999877766664
No 86
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=32.91 E-value=13 Score=27.81 Aligned_cols=12 Identities=42% Similarity=1.160 Sum_probs=10.0
Q ss_pred CccCcccccccc
Q 021522 102 RPACPLCRGEVT 113 (311)
Q Consensus 102 ~L~CPLCRGeVk 113 (311)
-|+||.|.|...
T Consensus 8 iL~CP~ck~~L~ 19 (69)
T 2pk7_A 8 ILACPICKGPLK 19 (69)
T ss_dssp TCCCTTTCCCCE
T ss_pred heeCCCCCCcCe
Confidence 489999999864
No 87
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=32.75 E-value=14 Score=27.63 Aligned_cols=13 Identities=23% Similarity=0.616 Sum_probs=10.4
Q ss_pred CCccCcccccccc
Q 021522 101 CRPACPLCRGEVT 113 (311)
Q Consensus 101 ~~L~CPLCRGeVk 113 (311)
.-|+||.|.|...
T Consensus 7 ~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 7 DILVCPVTKGRLE 19 (68)
T ss_dssp CCCBCSSSCCBCE
T ss_pred hheECCCCCCcCe
Confidence 3499999999753
No 88
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=32.67 E-value=14 Score=27.68 Aligned_cols=12 Identities=42% Similarity=1.126 Sum_probs=9.8
Q ss_pred CccCcccccccc
Q 021522 102 RPACPLCRGEVT 113 (311)
Q Consensus 102 ~L~CPLCRGeVk 113 (311)
-|+||.|.|...
T Consensus 8 iL~CP~ck~~L~ 19 (68)
T 2hf1_A 8 ILVCPLCKGPLV 19 (68)
T ss_dssp ECBCTTTCCBCE
T ss_pred heECCCCCCcCe
Confidence 389999999753
No 89
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=32.52 E-value=20 Score=26.55 Aligned_cols=36 Identities=31% Similarity=0.785 Sum_probs=27.6
Q ss_pred cCCccccccccccC--CCceeeeecccCCCCCcccccCCCCCccchHH
Q 021522 25 TNWDDVTCPICLDF--PHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLD 70 (311)
Q Consensus 25 keWedvtCpICME~--PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLD 70 (311)
...++..|.||.+. ....-||+|- .|+..| |-.||.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD---------~C~~~~-H~~Cl~ 49 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCD---------MCNLAV-HQECYG 49 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECS---------SSCCEE-EHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECC---------CCCCcc-ccccCC
Confidence 45678899999865 4677899997 466666 778875
No 90
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=32.14 E-value=14 Score=27.77 Aligned_cols=13 Identities=31% Similarity=0.922 Sum_probs=10.3
Q ss_pred CCccCcccccccc
Q 021522 101 CRPACPLCRGEVT 113 (311)
Q Consensus 101 ~~L~CPLCRGeVk 113 (311)
.-|+||.|.|...
T Consensus 7 ~iL~CP~ck~~L~ 19 (70)
T 2js4_A 7 DILVCPVCKGRLE 19 (70)
T ss_dssp CCCBCTTTCCBEE
T ss_pred hheECCCCCCcCE
Confidence 3499999999753
No 91
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=31.28 E-value=33 Score=27.55 Aligned_cols=69 Identities=28% Similarity=0.589 Sum_probs=41.6
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCccCCCCCCccCcc
Q 021522 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (311)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~s~~~~~~~~~~~~~~~~~~L~CPL 107 (311)
.|..|+||--++ +-+|+- || +|.-.| |.+||.+--.--+..+ -.+...+. ...--.||-
T Consensus 14 ~D~~C~VC~~~t-~~~l~p-------CR--vC~Rvf-H~~CL~r~gy~~~~~a---~e~~l~A~-------T~~GWSC~~ 72 (89)
T 1wil_A 14 NDEMCDVCEVWT-AESLFP-------CR--VCTRVF-HDGCLRRMGYIQGDSA---AEVTEMAH-------TETGWSCHY 72 (89)
T ss_dssp CSCCCTTTCCCC-SSCCSS-------CS--SSSSCC-CHHHHHHHTSCCCCCC---CSCSCCCS-------SSSSCCCTT
T ss_pred CCcccCcccccc-ccceec-------cc--cccccc-cHhhcccccccccHHH---HHHHHccC-------CCCCccccc
Confidence 688999999888 445554 44 576666 8999987533322211 11111111 234478999
Q ss_pred ccccccCEEEcc
Q 021522 108 CRGEVTGWVVAD 119 (311)
Q Consensus 108 CRGeVkGWtVVe 119 (311)
| ++.||-+.|
T Consensus 73 C--enL~lLLtE 82 (89)
T 1wil_A 73 C--DNINLLLTE 82 (89)
T ss_dssp T--CCCCSSSCC
T ss_pred c--chhhhhcch
Confidence 9 788876554
No 92
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=30.78 E-value=22 Score=25.44 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=35.4
Q ss_pred ccCccccccccCEEEc-chhHHhhccccCcCcccCcccc-ccHHHHHHhhhhhCCCCCCCC
Q 021522 103 PACPLCRGEVTGWVVA-DKVRDYLNEKKRCCEEDQCTFA-GTYLELRKHAQLEHPHSRPSK 161 (311)
Q Consensus 103 L~CPLCRGeVkGWtVV-e~AR~~LN~K~RsC~~e~CsF~-GtY~eLrKHar~~HP~arP~e 161 (311)
..|+.|--...-..-. .-.+ +...|+-.|.. |... -+...|++|++..|...+|-.
T Consensus 43 ~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~~~~ 100 (107)
T 1wjp_A 43 AVCPYCSLRFFSPELKQEHES-KCEYKKLTCLE--CMRTFKSSFSIWRHQVEVHNQNNMAP 100 (107)
T ss_dssp BCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGG--GTEECSSHHHHHHHHHHTSCCCCCCC
T ss_pred ccCCCCCCccCCHHHHHHHHH-cCCCCCccCcc--ccchhCCHHHHHHHHHHHcCCCCCCC
Confidence 6788887554432211 1222 55666666754 6554 356789999998998877753
No 93
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.48 E-value=36 Score=22.90 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=37.9
Q ss_pred CCccCccccccccCEE-EcchhHHhhc---cccCcCcccCcccc-ccHHHHHHhhhhhCCCCCCCCC
Q 021522 101 CRPACPLCRGEVTGWV-VADKVRDYLN---EKKRCCEEDQCTFA-GTYLELRKHAQLEHPHSRPSKI 162 (311)
Q Consensus 101 ~~L~CPLCRGeVkGWt-VVe~AR~~LN---~K~RsC~~e~CsF~-GtY~eLrKHar~~HP~arP~eV 162 (311)
....|+.|--...-.. +..--+.+.+ .|+-.|.. |... -+-..|++|++..|+..+|..-
T Consensus 6 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~~~~~~~~ 70 (78)
T 2d9h_A 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKSHPALLLAPQ 70 (78)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTT--TCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred cCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCC--CCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence 4478999965433222 2223344444 56666655 6543 3457899999999999988654
No 94
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=30.20 E-value=21 Score=31.64 Aligned_cols=35 Identities=20% Similarity=0.620 Sum_probs=22.7
Q ss_pred cccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHh
Q 021522 29 DVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNA 75 (311)
Q Consensus 29 dvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka 75 (311)
--.|.||-+.=. ..+.|.- |++ .-|-.|+++|-+.
T Consensus 180 i~~C~iC~~iv~---------~g~~C~~--C~~-~~H~~C~~~~~~~ 214 (238)
T 3nw0_A 180 VKICNICHSLLI---------QGQSCET--CGI-RMHLPCVAKYFQS 214 (238)
T ss_dssp CCBCTTTCSBCS---------SCEECSS--SCC-EECHHHHHHHTTT
T ss_pred CCcCcchhhHHh---------CCcccCc--cCh-HHHHHHHHHHHHh
Confidence 346999977544 3444543 664 4588999998643
No 95
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=29.92 E-value=15 Score=25.84 Aligned_cols=35 Identities=20% Similarity=0.526 Sum_probs=24.7
Q ss_pred CCccccccccccC--CCceeeeecccCCCCCcccccCCCCCccchHH
Q 021522 26 NWDDVTCPICLDF--PHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLD 70 (311)
Q Consensus 26 eWedvtCpICME~--PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLD 70 (311)
+-++..|.||-.. .-..-||+|- .|+..| |-.||+
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd---------~C~~~~-H~~C~~ 39 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICD---------KCGQGY-HQLCHT 39 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECS---------SSCCEE-ETTTSS
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECC---------CCChHH-HhhhCC
Confidence 3467899999975 3447899997 356666 667764
No 96
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=29.39 E-value=75 Score=21.75 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=30.3
Q ss_pred CccCccccccccCEE-EcchhHHhhcc--ccCcCcccCcccc-ccHHHHHHhhhhhCCCC
Q 021522 102 RPACPLCRGEVTGWV-VADKVRDYLNE--KKRCCEEDQCTFA-GTYLELRKHAQLEHPHS 157 (311)
Q Consensus 102 ~L~CPLCRGeVkGWt-VVe~AR~~LN~--K~RsC~~e~CsF~-GtY~eLrKHar~~HP~a 157 (311)
...|+.|--...-.. +..-.+.+.+. |+-.|.. |... .+-..|.+|++..|+..
T Consensus 35 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~ 92 (95)
T 2yt9_A 35 PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQS--CGKGFSRPDHLNGHIKQVHSGP 92 (95)
T ss_dssp SEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSS--SCCCBSSHHHHHHHHHHTSCCC
T ss_pred CCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCC--ccchhCCHHHHHHHHHHhcCCC
Confidence 367888854322111 11222333333 5555644 6543 45678999999999753
No 97
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=29.27 E-value=17 Score=26.08 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=9.9
Q ss_pred CCccCccccccc
Q 021522 101 CRPACPLCRGEV 112 (311)
Q Consensus 101 ~~L~CPLCRGeV 112 (311)
.-|+||.|.|..
T Consensus 9 ~iL~CP~c~~~L 20 (56)
T 2kpi_A 9 EILACPACHAPL 20 (56)
T ss_dssp TSCCCSSSCSCE
T ss_pred hheeCCCCCCcc
Confidence 348999999974
No 98
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=27.81 E-value=28 Score=22.15 Aligned_cols=53 Identities=26% Similarity=0.301 Sum_probs=31.7
Q ss_pred ccCccccccccCEE-EcchhHHhhccccCcCcccCcccc-ccHHHHHHhhhhhCCCC
Q 021522 103 PACPLCRGEVTGWV-VADKVRDYLNEKKRCCEEDQCTFA-GTYLELRKHAQLEHPHS 157 (311)
Q Consensus 103 L~CPLCRGeVkGWt-VVe~AR~~LN~K~RsC~~e~CsF~-GtY~eLrKHar~~HP~a 157 (311)
..|+.|--...-.. +..-.+.+.+.|+-.|.. |... .+-..|.+|++..|+..
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~ 57 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSGN 57 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTT--TCCEESSHHHHHHHHTTTSCCS
T ss_pred CcCCCCccccCCHHHHHHHHHHhCCCCCccCCC--CCCccCCHHHHHHHHHHHcCCc
Confidence 46888854433221 223334455566666765 5443 35678999999889753
No 99
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=27.11 E-value=30 Score=21.69 Aligned_cols=50 Identities=26% Similarity=0.402 Sum_probs=31.9
Q ss_pred ccCccccccccCEE-EcchhHHhhccccCcCcccCcccc-ccHHHHHHhhhhhC
Q 021522 103 PACPLCRGEVTGWV-VADKVRDYLNEKKRCCEEDQCTFA-GTYLELRKHAQLEH 154 (311)
Q Consensus 103 L~CPLCRGeVkGWt-VVe~AR~~LN~K~RsC~~e~CsF~-GtY~eLrKHar~~H 154 (311)
..|+.|--...-.. +..-.+.+.+.|+-.|.. |... .+-..|.+|++..|
T Consensus 5 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh 56 (57)
T 3uk3_C 5 RECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEF--CEYAAAQKTSLRYHLERHH 56 (57)
T ss_dssp CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSS--SSCEESSHHHHHHHHHHHC
T ss_pred ccCCCCcchhCChHHHHHHHHHcCCCCCcCCCC--CcchhCCHHHHHHHHHHhc
Confidence 57888854433222 334455666777777765 6554 35678999998877
No 100
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=26.67 E-value=39 Score=28.79 Aligned_cols=32 Identities=25% Similarity=0.527 Sum_probs=20.7
Q ss_pred CCccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHH
Q 021522 26 NWDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLD 70 (311)
Q Consensus 26 eWedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLD 70 (311)
+..+-.|.||-.. . =||+|-. |+-+| |-.||+
T Consensus 4 d~~~~~C~~C~~~-g--~ll~Cd~---------C~~~~-H~~Cl~ 35 (207)
T 3u5n_A 4 DPNEDWCAVCQNG-G--DLLCCEK---------CPKVF-HLTCHV 35 (207)
T ss_dssp CSSCSSBTTTCCC-E--EEEECSS---------SSCEE-CTTTSS
T ss_pred CCCCCCCCCCCCC-C--ceEEcCC---------CCCcc-CCccCC
Confidence 3455669999843 3 4888874 55444 556874
No 101
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=25.52 E-value=20 Score=28.71 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=10.7
Q ss_pred CccCccccccccC
Q 021522 102 RPACPLCRGEVTG 114 (311)
Q Consensus 102 ~L~CPLCRGeVkG 114 (311)
-|+||.|+|++.-
T Consensus 8 ILaCP~cK~pL~l 20 (97)
T 2k5r_A 8 LLCSPDTRQPLSL 20 (97)
T ss_dssp SCCCCTTSSCCEE
T ss_pred heECCCCCCcccc
Confidence 4899999997753
No 102
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=24.37 E-value=44 Score=26.36 Aligned_cols=43 Identities=19% Similarity=0.411 Sum_probs=30.8
Q ss_pred CCCCCCccCccccccccCEEEcchhHHhhccccCcCcccCccccccHHHHHHhhhhhCCCCCCCCCCc
Q 021522 97 SEDSCRPACPLCRGEVTGWVVADKVRDYLNEKKRCCEEDQCTFAGTYLELRKHAQLEHPHSRPSKIDP 164 (311)
Q Consensus 97 ~~~~~~L~CPLCRGeVkGWtVVe~AR~~LN~K~RsC~~e~CsF~GtY~eLrKHar~~HP~arP~eVDP 164 (311)
........||.||... | -+-+...|.-|+..+||-..+.+-=|
T Consensus 40 n~~A~~i~C~VCr~tF------------m-------------~t~~~~~L~~H~e~KHpK~~~~eCFP 82 (86)
T 1wvk_A 40 NKKAMSIQCKVCMQTF------------I-------------CTTSEVKCREHAEAKHPKADVVACFP 82 (86)
T ss_dssp CCTTCCEEETTTTEEE------------C-------------CSSCSHHHHHHHHTCCSCCGGGTTSG
T ss_pred HHHhhCCCChHhHhhH------------H-------------hcCChHHHHHHHHcCCCCCCHHHHCc
Confidence 3467789999999643 0 12357899999999999876655433
No 103
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.53 E-value=55 Score=19.59 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=21.9
Q ss_pred hccccCcCcccCccccccHHHHHHhhhhhCCCCCCC
Q 021522 125 LNEKKRCCEEDQCTFAGTYLELRKHAQLEHPHSRPS 160 (311)
Q Consensus 125 LN~K~RsC~~e~CsF~GtY~eLrKHar~~HP~arP~ 160 (311)
...|+-.|..=+=.|. +-..|.+|++..|...+|-
T Consensus 8 ~~~k~~~C~~C~k~F~-~~~~L~~H~~~~H~~~k~~ 42 (47)
T 2epx_A 8 TGKKPYECIECGKAFI-QNTSLIRHWRYYHTGEKPS 42 (47)
T ss_dssp CCCCSBCCSSSCCCBS-SHHHHHHHHTTTTTTSCSS
T ss_pred CCCCCEECCccCchhC-ChHHHHHHhHhhcCCCCCC
Confidence 3445555544222333 4578999998778887774
No 104
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=23.13 E-value=60 Score=24.49 Aligned_cols=11 Identities=9% Similarity=0.102 Sum_probs=7.0
Q ss_pred CCCCccCcccc
Q 021522 99 DSCRPACPLCR 109 (311)
Q Consensus 99 ~~~~L~CPLCR 109 (311)
......|+.|-
T Consensus 22 ~~~~~~C~~C~ 32 (155)
T 2rpc_A 22 AQLSRPKKSCD 32 (155)
T ss_dssp TCCSSSCCCCC
T ss_pred hhcccccccCC
Confidence 45556777773
No 105
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=23.06 E-value=79 Score=24.06 Aligned_cols=33 Identities=33% Similarity=0.950 Sum_probs=25.8
Q ss_pred ccccccccccC--CCceeeeecccCCCCCcccccCCCCCccchHH
Q 021522 28 DDVTCPICLDF--PHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLD 70 (311)
Q Consensus 28 edvtCpICME~--PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLD 70 (311)
++..|.||.+. .....||+|- .|+..| |-.||.
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD---------~C~~~f-H~~Cl~ 58 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCD---------MCNLAV-HQECYG 58 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECS---------SSCCCC-CHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECC---------CCCchh-hcccCC
Confidence 57899999975 4777999998 367776 678876
No 106
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=22.34 E-value=91 Score=22.16 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=27.0
Q ss_pred CCccCccccccccCEE-EcchhHHhhccccCcCcccCcccc-ccHHHHHHhhhhh
Q 021522 101 CRPACPLCRGEVTGWV-VADKVRDYLNEKKRCCEEDQCTFA-GTYLELRKHAQLE 153 (311)
Q Consensus 101 ~~L~CPLCRGeVkGWt-VVe~AR~~LN~K~RsC~~e~CsF~-GtY~eLrKHar~~ 153 (311)
....||.|--...-.. +..--+.+.+.|+-.|.. |... .+...|.+|.+..
T Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~ 58 (124)
T 2dlq_A 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPK--CGKCYFRKENLLEHEARN 58 (124)
T ss_dssp SSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTT--TCCBCSSHHHHHHHHHHC
T ss_pred CCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCC--CCchhcCHHHHHHHHhhh
Confidence 4467888854433222 122233444555555644 5433 3567788887764
No 107
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.01 E-value=43 Score=23.83 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=28.8
Q ss_pred CccCccccccccCEE-EcchhHHhhccccCcCcccCcccc-ccHHHHHHhhhhhCC
Q 021522 102 RPACPLCRGEVTGWV-VADKVRDYLNEKKRCCEEDQCTFA-GTYLELRKHAQLEHP 155 (311)
Q Consensus 102 ~L~CPLCRGeVkGWt-VVe~AR~~LN~K~RsC~~e~CsF~-GtY~eLrKHar~~HP 155 (311)
...|+.|--...-.. +..-.+.+...|+-.|.. |... -+-..|.+|++.-|+
T Consensus 37 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~ 90 (110)
T 2csh_A 37 PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI--CAKRFMWRDSFHRHVTSCTK 90 (110)
T ss_dssp SEECTTTSCEESSSHHHHHHHTTTCCCCCEECSS--SCCEESCHHHHHHHHHHHHH
T ss_pred CccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCC--CcchhcCHHHHHHHHHHccc
Confidence 378999964433221 112223333445555654 5443 346789999987665
No 108
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.98 E-value=49 Score=21.04 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=19.6
Q ss_pred ccccCcCcccCcccc-ccHHHHHHhhhh
Q 021522 126 NEKKRCCEEDQCTFA-GTYLELRKHAQL 152 (311)
Q Consensus 126 N~K~RsC~~e~CsF~-GtY~eLrKHar~ 152 (311)
++|+-.|.++.|... -.-..|++|+|+
T Consensus 6 gekp~~C~~~~C~k~F~~~~~L~~H~r~ 33 (38)
T 2eln_A 6 SGILLKCPTDGCDYSTPDKYKLQAHLKV 33 (38)
T ss_dssp CCCCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence 467778988778654 245689999875
No 109
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.87 E-value=9.7 Score=27.07 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=36.9
Q ss_pred CCCccCccccccccCEEEcchhHHhhccccCcCcccCccccccHHHHHHhhhhhCCCCC
Q 021522 100 SCRPACPLCRGEVTGWVVADKVRDYLNEKKRCCEEDQCTFAGTYLELRKHAQLEHPHSR 158 (311)
Q Consensus 100 ~~~L~CPLCRGeVkGWtVVe~AR~~LN~K~RsC~~e~CsF~GtY~eLrKHar~~HP~ar 158 (311)
.....|+.|-..|....+.+-. ..-..|+-.|.. |...-...+|..|.+ .||.+.
T Consensus 15 ~r~~~C~~C~~~~~~~~L~~H~-~~c~~~~~~C~~--C~~~~~~~~l~~H~~-~c~~~~ 69 (75)
T 2d9k_A 15 LRLAVCQHCDLELSILKLKEHE-DYCGARTELCGN--CGRNVLVKDLKTHPE-VCGREG 69 (75)
T ss_dssp CCCEECSSSCCEECHHHHHHHH-HHHHHCEEECSS--SCCEEETTGGGTHHH-HBTTBS
T ss_pred CcccCCcccChHhhHHHHHHHH-hHcCCCceEccc--CCCcCcHHHHHHHHH-HccCCc
Confidence 4457899997777422222222 334467777875 887777899999986 488764
No 110
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.38 E-value=33 Score=31.93 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=17.9
Q ss_pred CccccccccccCCCceeee
Q 021522 27 WDDVTCPICLDFPHNGVLL 45 (311)
Q Consensus 27 WedvtCpICME~PHNAVLL 45 (311)
|....||||-..|.-+||.
T Consensus 180 ~~~~~CPvCGs~P~~s~l~ 198 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIR 198 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEE
T ss_pred ccCCCCCCCCCcCceeEEe
Confidence 9999999999999999875
Done!