BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021523
         (311 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 163/308 (52%), Gaps = 22/308 (7%)

Query: 1   MGVKGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENQVPSMRPALAFHANSSAVHVSAPP 60
           M VK F+  G A+ +A   T PLD  KVR+Q+QGE+Q   +R A            SA  
Sbjct: 1   MTVK-FLGAGTAACIADLITFPLDTAKVRLQIQGESQ-GLVRTA-----------ASAQY 47

Query: 61  RLGPVGVGVRIIQQEGVSALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDPETRNMPLV 120
           R G +G  + +++ EG  +L++G+ A + RQ  +++ R+GLYD +KQ +T   + +  + 
Sbjct: 48  R-GVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKG-SEHAGIG 105

Query: 121 RKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVVDAITSMAKQEGVTSL 180
            +                P DV  VR QA  R    +R  Y+S V+A  ++A++EG+  L
Sbjct: 106 SRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRR--YQSTVEAYKTIAREEGIRGL 163

Query: 181 WRGSSLTVNRAMLVTASQLASYDQIKENILSKGWMRDGLGTHVTXXXXXXXXXXXXXNPV 240
           W+G+S  V R  +V  ++L +YD IK+ +L    M D L  H T             +PV
Sbjct: 164 WKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPV 223

Query: 241 DVIKTRVMNMKVEAGKEPPYKGALDCALKTVRSEGPMALYKGFIPTISRQGPFTVVLFVT 300
           DV+KTR MN  +       Y  A  CAL  +R EGP A YKGF+P+  R G + VV+FVT
Sbjct: 224 DVVKTRYMNSAL-----GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVT 278

Query: 301 LEQVRKLM 308
            EQ+++ +
Sbjct: 279 YEQLKRAL 286



 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/223 (20%), Positives = 75/223 (33%), Gaps = 34/223 (15%)

Query: 4   KGFVEGGIAS-IVAGCST--------HPLDLIKVRMQLQGENQVPSMRPALAFHANSSAV 54
           KG    GI S ++AG +T         P D++KVR Q Q          A       S V
Sbjct: 97  KGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQAR--------AGGGRRYQSTV 148

Query: 55  HVSAPPRLGPVGVGVRIIQQEGVSALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDPET 114
                           I ++EG+  L+ G S  V R  + +   +  YD++K        
Sbjct: 149 EAYKT-----------IAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL 197

Query: 115 RNMPLVRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVVDAITSMAKQ 174
               L                  +P DV   R         +    Y S      +M ++
Sbjct: 198 MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYM------NSALGQYHSAGHCALTMLRK 251

Query: 175 EGVTSLWRGSSLTVNRAMLVTASQLASYDQIKENILSKGWMRD 217
           EG  + ++G   +  R          +Y+Q+K  +++    R+
Sbjct: 252 EGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSRE 294


>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 130/317 (41%), Gaps = 38/317 (11%)

Query: 3   VKGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENQVPSMRPALAFHANSSAVHVSAPPRL 62
           +K F+ GG+A+ ++  +  P++ +K+ +Q+Q              HA+     +SA  + 
Sbjct: 8   LKDFLAGGVAAAISKTAVAPIERVKLLLQVQ--------------HASK---QISAEKQY 50

Query: 63  -GPVGVGVRIIQQEGVSALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDPETRNMPLVR 121
            G +   VRI +++G  + + G  A V+R            D  KQ +     R+    R
Sbjct: 51  KGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWR 110

Query: 122 ----KXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVVDAITSMAKQEGV 177
                                P D A  R+ AD     AQR  +  + + IT + K +G+
Sbjct: 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQR-EFTGLGNCITKIFKSDGL 169

Query: 178 TSLWRGSSLTVNRAMLVTASQLASYDQIKENILSKGWMRDGLGTHVTXXXXXXXXXXXXX 237
             L++G +++V   ++  A+    YD       +KG + D    H+              
Sbjct: 170 RGLYQGFNVSVQGIIIYRAAYFGVYDT------AKGMLPDPKNVHIIVSWMIAQTVTAVA 223

Query: 238 N----PVDVIKTRVMNMKVEAGKEPPYKGALDCALKTVRSEGPMALYKGFIPTISR--QG 291
                P D ++ R+M      G +  Y G +DC  K  + EGP A +KG    + R   G
Sbjct: 224 GLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG 283

Query: 292 PFTVVLFVTLEQVRKLM 308
            F +VL+   ++++K +
Sbjct: 284 AFVLVLY---DEIKKFV 297


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,526,873
Number of Sequences: 62578
Number of extensions: 245003
Number of successful extensions: 552
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 4
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)