Query 021523
Match_columns 311
No_of_seqs 166 out of 1953
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 05:22:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 6.5E-58 2.2E-62 396.1 23.8 285 4-309 3-287 (303)
2 1okc_A ADP, ATP carrier protei 100.0 5.8E-57 2E-61 389.3 24.4 286 3-308 8-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 2.4E-36 8.2E-41 260.3 20.0 194 116-309 4-202 (297)
4 2lck_A Mitochondrial uncouplin 100.0 1.2E-35 4.2E-40 256.5 17.4 187 122-310 4-194 (303)
5 3tgu_G UQCRQ, mitochondrial ub 38.7 19 0.00064 23.4 2.2 35 275-309 33-67 (81)
6 1pp9_G Ubiquinol-cytochrome C 28.7 31 0.0011 22.4 2.0 36 274-309 32-67 (81)
7 3cx5_H Cytochrome B-C1 complex 26.4 54 0.0019 21.9 2.9 36 273-308 41-76 (93)
8 3arc_L Photosystem II reaction 19.7 76 0.0026 16.8 2.0 20 78-97 15-34 (37)
9 3f2e_A SIRV coat protein; four 11.9 1.2E+02 0.0039 19.3 1.8 62 159-239 6-71 (100)
10 2l5r_A Antimicrobial peptide a 11.1 1.6E+02 0.0056 13.7 1.9 19 69-88 3-21 (26)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=6.5e-58 Score=396.06 Aligned_cols=285 Identities=39% Similarity=0.667 Sum_probs=253.5
Q ss_pred chhhhhhhhhHhHhhhccchhHHHHHHHhcCCCCCCCchhhhhhhccccccccCCCCCCCcchhhhHHHhhhhHHHHhhc
Q 021523 4 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENQVPSMRPALAFHANSSAVHVSAPPRLGPVGVGVRIIQQEGVSALFSG 83 (311)
Q Consensus 4 ~~~l~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G 83 (311)
.++++|++||+++.++++|+|+||+|+|++....... .......+.++++++++++++||++|||||
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~eG~~glyrG 69 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLV-------------RTAASAQYRGVLGTILTMVRTEGPRSLYNG 69 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHH-------------HHCSCSSCSCHHHHHHHHHHHHCHHHHHSS
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhcccccc-------------ccccCCCCCCHHHHHHHHHHhhCHHHHHcC
Confidence 4789999999999999999999999999986532100 001234578999999999999999999999
Q ss_pred hhHHHHHHhhhhhhHhhhhHHHHhhhCCCCCCCchHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhCCCCCCcccCCccc
Q 021523 84 VSATVLRQTLYSTTRMGLYDVLKQKWTDPETRNMPLVRKIAAGLIAGGIGAAVGNPADVAMVRMQADGRLPPAQRRNYKS 163 (311)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~P~d~ik~~~q~~~~~~~~~~~~~~~ 163 (311)
+.+++++.++..+++|.+||.+++.+.+..+ ..+....+++|++|++++.++++|+|++|+|+|++... ....+|.+
T Consensus 70 ~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--~~~~~~~~ 146 (303)
T 2lck_A 70 LVAGLQRQMSFASVRIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA--GGGRRYQS 146 (303)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC--CCSSSCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc--CCCCCCCC
Confidence 9999999999999999999999999876422 46677899999999999999999999999999998642 23457899
Q ss_pred HHHHHHHHHHhhcccccccCchhHHHHHHHhhhhhHhhHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhHHhhcCcHHHH
Q 021523 164 VVDAITSMAKQEGVTSLWRGSSLTVNRAMLVTASQLASYDQIKENILSKGWMRDGLGTHVTASFSAGFVAAVASNPVDVI 243 (311)
Q Consensus 164 ~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pld~i 243 (311)
.+++++++++++|+++||||+.+++++.+++.+++|.+||.+++.+.+......+....+++|++||++++++++|+|+|
T Consensus 147 ~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvv 226 (303)
T 2lck_A 147 TVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVV 226 (303)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 99999999999999999999999999999999999999999999887655445677889999999999999999999999
Q ss_pred HHHHhhccccCCCCCCCCCHHHHHHHHHHhhCccccccchhHHHhhhhhhhHHHHHHHHHHHHHhh
Q 021523 244 KTRVMNMKVEAGKEPPYKGALDCALKTVRSEGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKLMK 309 (311)
Q Consensus 244 k~r~q~~~~~~~~~~~~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~l~ 309 (311)
|+|||.+.. ..|.++++|+++++++||++|||||+.+++++.+|..+++|.+||.+|+.+.
T Consensus 227 ktrlq~~~~-----~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 227 KTRYMNSAL-----GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp HHHHTTCCS-----SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHhccc-----cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999854 3689999999999999999999999999999999999999999999998764
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=5.8e-57 Score=389.27 Aligned_cols=286 Identities=23% Similarity=0.369 Sum_probs=243.4
Q ss_pred cchhhhhhhhhHhHhhhccchhHHHHHHHhcCCCCCCCchhhhhhhccccccccCCCCCCCcchhhhHHHhhhhHHHHhh
Q 021523 3 VKGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENQVPSMRPALAFHANSSAVHVSAPPRLGPVGVGVRIIQQEGVSALFS 82 (311)
Q Consensus 3 ~~~~l~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~ 82 (311)
++++++|++||+++.++++|+|+||+|+|++...... .....+.++++++++++++||++||||
T Consensus 8 ~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~----------------~~~~~~~~~~~~~~~i~~~eG~~glyr 71 (297)
T 1okc_A 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQI----------------SAEKQYKGIIDCVVRIPKEQGFLSFWR 71 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSC----------------CGGGSCCSHHHHHHHHHHHHCGGGGGT
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccccccc----------------ccccccccHHHHHHHHHhccchhheec
Confidence 4679999999999999999999999999998642200 012357899999999999999999999
Q ss_pred chhHHHHHHhhhhhhHhhhhHHHHhhh-CCCCCCC---chHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhCCCCCCccc
Q 021523 83 GVSATVLRQTLYSTTRMGLYDVLKQKW-TDPETRN---MPLVRKIAAGLIAGGIGAAVGNPADVAMVRMQADGRLPPAQR 158 (311)
Q Consensus 83 G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~g~~a~~~~~~i~~P~d~ik~~~q~~~~~~~~~~ 158 (311)
|+.+++++.++..+++|.+||.+++.+ ...+... .+....+++|++|++++.++++|+|++|+|+|++... ....
T Consensus 72 G~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-~~~~ 150 (297)
T 1okc_A 72 GNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK-GAAQ 150 (297)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-STTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccC-CCcC
Confidence 999999999999999999999999954 3322211 2346789999999999999999999999999998541 1224
Q ss_pred CCcccHHHHHHHHHHhhcccccccCchhHHHHHHHhhhhhHhhHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhHHhhcC
Q 021523 159 RNYKSVVDAITSMAKQEGVTSLWRGSSLTVNRAMLVTASQLASYDQIKENILSKGWMRDGLGTHVTASFSAGFVAAVASN 238 (311)
Q Consensus 159 ~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~ 238 (311)
.+|.+.++++++++++||+++||+|+.+++++.+|+.+++|.+||.+++.+.+.. +.+....+++|++||++++++++
T Consensus 151 ~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~--~~~~~~~~~~g~~ag~~a~~~t~ 228 (297)
T 1okc_A 151 REFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK--NVHIIVSWMIAQTVTAVAGLVSY 228 (297)
T ss_dssp CSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG--CSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC--CccHHHHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999765432 35677889999999999999999
Q ss_pred cHHHHHHHHhhccccCCCCCCCCCHHHHHHHHHHhhCccccccchhHHHhhhhhhhHHHHHHHHHHHHHh
Q 021523 239 PVDVIKTRVMNMKVEAGKEPPYKGALDCALKTVRSEGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKLM 308 (311)
Q Consensus 239 Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~l 308 (311)
|+|+||+|||.+.........|+++++|+++++++||++|||||+.+++++. +.++++|.+||.+++++
T Consensus 229 P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 229 PFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred hHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 9999999999975432334579999999999999999999999999999996 57899999999998764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.4e-36 Score=260.35 Aligned_cols=194 Identities=20% Similarity=0.329 Sum_probs=168.4
Q ss_pred CchHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhCCCCC-CcccCCcccHHHHHHHHHHhhcccccccCchhHHHHHHHh
Q 021523 116 NMPLVRKIAAGLIAGGIGAAVGNPADVAMVRMQADGRLP-PAQRRNYKSVVDAITSMAKQEGVTSLWRGSSLTVNRAMLV 194 (311)
Q Consensus 116 ~~~~~~~~~~g~~a~~~~~~i~~P~d~ik~~~q~~~~~~-~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~ 194 (311)
..+....+++|++|++++.++++|+|++|+|+|++.... .....+|.+.++++++++++||+++||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 345677899999999999999999999999999975421 1224578999999999999999999999999999999999
Q ss_pred hhhhHhhHHHHHHHHhhcCCCCC----CchhHHHHHHHHHHhHHhhcCcHHHHHHHHhhccccCCCCCCCCCHHHHHHHH
Q 021523 195 TASQLASYDQIKENILSKGWMRD----GLGTHVTASFSAGFVAAVASNPVDVIKTRVMNMKVEAGKEPPYKGALDCALKT 270 (311)
Q Consensus 195 ~~~~~~~y~~~~~~~~~~~~~~~----~~~~~~~~g~~a~~~~~~~~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~i 270 (311)
.+++|.+||.+++.+.+...... +....+++|++||++++++++|+|+||+|+|.+........+|.+.+++++++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i 163 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 163 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHH
Confidence 99999999999995443222112 24678999999999999999999999999999864433456789999999999
Q ss_pred HHhhCccccccchhHHHhhhhhhhHHHHHHHHHHHHHhh
Q 021523 271 VRSEGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKLMK 309 (311)
Q Consensus 271 ~~~eG~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~l~ 309 (311)
+++||++|||||+.+++++.++..++.|.+||.+++.+.
T Consensus 164 ~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~ 202 (297)
T 1okc_A 164 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202 (297)
T ss_dssp HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998764
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.2e-35 Score=256.48 Aligned_cols=187 Identities=25% Similarity=0.403 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHhCCCCCC----cccCCcccHHHHHHHHHHhhcccccccCchhHHHHHHHhhhh
Q 021523 122 KIAAGLIAGGIGAAVGNPADVAMVRMQADGRLPP----AQRRNYKSVVDAITSMAKQEGVTSLWRGSSLTVNRAMLVTAS 197 (311)
Q Consensus 122 ~~~~g~~a~~~~~~i~~P~d~ik~~~q~~~~~~~----~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~ 197 (311)
.+++|++|++++.++++|+|++|+|+|++..... ....+|.+.++++++++++||+++||||+.+.+++.+++.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999865211 123568999999999999999999999999999999999999
Q ss_pred hHhhHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhHHhhcCcHHHHHHHHhhccccCCCCCCCCCHHHHHHHHHHhhCcc
Q 021523 198 QLASYDQIKENILSKGWMRDGLGTHVTASFSAGFVAAVASNPVDVIKTRVMNMKVEAGKEPPYKGALDCALKTVRSEGPM 277 (311)
Q Consensus 198 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~i~~~eG~~ 277 (311)
+|.+||.+++.+.+... ..+....+++|++||+++.++++|+|+||+|+|.+... .....|.+.++++++|+++||++
T Consensus 84 ~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-~~~~~~~~~~~~~~~i~~~eG~~ 161 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA-GGGRRYQSTVEAYKTIAREEGIR 161 (303)
T ss_dssp TTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC-CCSSSCCCHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc-CCCCCCCCHHHHHHHHHHhcChh
Confidence 99999999998876522 46778899999999999999999999999999998642 23457899999999999999999
Q ss_pred ccccchhHHHhhhhhhhHHHHHHHHHHHHHhhc
Q 021523 278 ALYKGFIPTISRQGPFTVVLFVTLEQVRKLMKD 310 (311)
Q Consensus 278 ~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~l~~ 310 (311)
|||||+.+++++.++..++.|.+||.+++.+.+
T Consensus 162 glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~ 194 (303)
T 2lck_A 162 GLWKGTSPNVARNAIVNCAELVTYDLIKDTLLK 194 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998753
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=38.72 E-value=19 Score=23.45 Aligned_cols=35 Identities=6% Similarity=0.104 Sum_probs=28.0
Q ss_pred CccccccchhHHHhhhhhhhHHHHHHHHHHHHHhh
Q 021523 275 GPMALYKGFIPTISRQGPFTVVLFVTLEQVRKLMK 309 (311)
Q Consensus 275 G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~l~ 309 (311)
|+-..+|-+..+++.++|..++.+.+|++.++.-+
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne 67 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFE 67 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 45556666777889999999999999999887653
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=28.69 E-value=31 Score=22.39 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=29.4
Q ss_pred hCccccccchhHHHhhhhhhhHHHHHHHHHHHHHhh
Q 021523 274 EGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKLMK 309 (311)
Q Consensus 274 eG~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~l~ 309 (311)
.|+...+|-+.-+++.++|..++.+.+|++.++.-+
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e 67 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFE 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHH
Confidence 456667777788888999999999999999887653
No 7
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=26.43 E-value=54 Score=21.89 Aligned_cols=36 Identities=3% Similarity=-0.070 Sum_probs=30.7
Q ss_pred hhCccccccchhHHHhhhhhhhHHHHHHHHHHHHHh
Q 021523 273 SEGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKLM 308 (311)
Q Consensus 273 ~eG~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~l 308 (311)
.+|+-..+|-+..+++.++|..++.+.+|++.++.-
T Consensus 41 ~~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~ 76 (93)
T 3cx5_H 41 HNAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYN 76 (93)
T ss_dssp TTTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHhcceEEechHhHHHHHHHHHHHHH
Confidence 347788888888889999999999999999988754
No 8
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=19.71 E-value=76 Score=16.77 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=14.8
Q ss_pred HHHhhchhHHHHHHhhhhhh
Q 021523 78 SALFSGVSATVLRQTLYSTT 97 (311)
Q Consensus 78 ~gly~G~~~~~~~~~~~~~~ 97 (311)
.++|.|+..-++-.++....
T Consensus 15 TSLy~GLLlifvlavlFssy 34 (37)
T 3arc_L 15 TSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhh
Confidence 68999998877766665543
No 9
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=11.93 E-value=1.2e+02 Score=19.31 Aligned_cols=62 Identities=21% Similarity=0.381 Sum_probs=36.2
Q ss_pred CCcccHHHHHHHHHHhhcccc----cccCchhHHHHHHHhhhhhHhhHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhHH
Q 021523 159 RNYKSVVDAITSMAKQEGVTS----LWRGSSLTVNRAMLVTASQLASYDQIKENILSKGWMRDGLGTHVTASFSAGFVAA 234 (311)
Q Consensus 159 ~~~~~~~~~~~~i~~~~G~~~----ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~ 234 (311)
.++.++-+-+..++.+-|+.| +|+|+.....|..- +- ...+.+.+++.|.-+-.+++
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaraln-----------------r~--g~gpalvnminglkayyisa 66 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARALN-----------------RL--GGGPALVNMINGLKAYYISA 66 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHH-----------------HH--CSSHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHHH-----------------hc--CCchHHHHHHhhhhHhhhHh
Confidence 467777788888888888754 66676655543321 11 11334556666666666666
Q ss_pred hhcCc
Q 021523 235 VASNP 239 (311)
Q Consensus 235 ~~~~P 239 (311)
+-.+|
T Consensus 67 fnanp 71 (100)
T 3f2e_A 67 FNANP 71 (100)
T ss_dssp HCCCH
T ss_pred hcCCc
Confidence 66666
No 10
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=11.07 E-value=1.6e+02 Score=13.68 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=11.3
Q ss_pred hHHHhhhhHHHHhhchhHHH
Q 021523 69 VRIIQQEGVSALFSGVSATV 88 (311)
Q Consensus 69 ~~i~~~~G~~gly~G~~~~~ 88 (311)
++|++. |+.++-+|..+..
T Consensus 3 keifka-glgslvkgiaahv 21 (26)
T 2l5r_A 3 KEIFKA-GLGSLVKGIAAHV 21 (26)
T ss_dssp HHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHH-hHHHHHHHHHHHH
Confidence 444443 6777777766543
Done!