Query 021524
Match_columns 311
No_of_seqs 101 out of 114
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 03:40:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06217 GAGA_bind: GAGA bindi 100.0 6E-121 1E-125 850.1 9.3 291 2-311 3-301 (301)
2 PF06217 GAGA_bind: GAGA bindi 99.0 5.2E-11 1.1E-15 112.9 0.5 57 45-108 26-82 (301)
3 COG4372 Uncharacterized protei 97.3 0.00099 2.1E-08 66.9 9.0 58 45-102 209-266 (499)
4 COG4372 Uncharacterized protei 96.0 0.029 6.3E-07 56.7 8.7 51 47-97 197-254 (499)
5 PF04094 DUF390: Protein of un 95.5 0.056 1.2E-06 57.8 8.5 21 75-95 552-572 (828)
6 PF04094 DUF390: Protein of un 95.3 0.066 1.4E-06 57.2 8.4 48 50-97 534-581 (828)
7 TIGR03319 YmdA_YtgF conserved 91.0 1.9 4.2E-05 43.9 10.3 52 49-100 72-123 (514)
8 PRK12704 phosphodiesterase; Pr 90.0 2.7 5.9E-05 42.9 10.4 47 51-97 80-126 (520)
9 PRK12704 phosphodiesterase; Pr 86.8 5.5 0.00012 40.8 10.2 54 46-99 82-135 (520)
10 TIGR03319 YmdA_YtgF conserved 84.9 7.7 0.00017 39.7 10.1 54 45-98 75-128 (514)
11 PRK00106 hypothetical protein; 84.4 8.8 0.00019 39.9 10.4 23 262-284 443-465 (535)
12 PRK00106 hypothetical protein; 84.0 6.3 0.00014 40.9 9.1 23 221-243 333-355 (535)
13 PF12072 DUF3552: Domain of un 78.2 25 0.00054 31.4 9.8 8 90-97 122-129 (201)
14 PF12072 DUF3552: Domain of un 75.2 26 0.00057 31.3 9.1 49 48-96 66-114 (201)
15 PRK10947 global DNA-binding tr 73.2 35 0.00076 29.7 9.1 65 44-108 5-69 (135)
16 PRK12705 hypothetical protein; 71.4 39 0.00085 35.1 10.5 25 262-286 416-440 (508)
17 PF10186 Atg14: UV radiation r 70.5 60 0.0013 28.9 10.2 56 44-99 75-137 (302)
18 PF10186 Atg14: UV radiation r 68.8 72 0.0016 28.4 10.4 22 269-290 251-280 (302)
19 cd00374 RNase_T2 Ribonuclease 67.5 6.3 0.00014 33.7 3.3 30 275-304 60-92 (195)
20 PRK10328 DNA binding protein, 64.7 66 0.0014 28.0 9.0 62 44-105 5-66 (134)
21 PRK12705 hypothetical protein; 63.9 65 0.0014 33.5 10.3 43 55-97 79-121 (508)
22 PF13300 DUF4078: Domain of un 58.5 53 0.0012 26.9 7.0 9 44-52 49-57 (88)
23 PRK10947 global DNA-binding tr 55.5 44 0.00095 29.1 6.4 57 44-102 14-70 (135)
24 PRK06569 F0F1 ATP synthase sub 53.2 1.7E+02 0.0037 26.2 10.5 61 42-102 33-102 (155)
25 PRK10328 DNA binding protein, 52.7 52 0.0011 28.6 6.4 46 54-99 22-67 (134)
26 KOG1642 Ribonuclease, T2 famil 47.2 17 0.00038 35.2 2.9 64 219-304 42-128 (263)
27 PF06212 GRIM-19: GRIM-19 prot 45.8 1.2E+02 0.0027 26.3 7.6 38 60-97 59-96 (130)
28 PF13300 DUF4078: Domain of un 44.5 98 0.0021 25.4 6.4 22 71-92 65-86 (88)
29 PRK00247 putative inner membra 39.8 1.4E+02 0.0029 30.7 8.0 20 82-101 365-384 (429)
30 COG3551 Uncharacterized protei 39.6 96 0.0021 31.6 6.8 23 75-97 359-381 (402)
31 PF08614 ATG16: Autophagy prot 38.7 2E+02 0.0044 25.4 8.1 58 46-103 102-159 (194)
32 PRK06569 F0F1 ATP synthase sub 37.6 3E+02 0.0066 24.6 11.0 35 66-100 72-107 (155)
33 PF00445 Ribonuclease_T2: Ribo 36.7 22 0.00049 30.5 1.7 28 277-304 65-95 (189)
34 PF07795 DUF1635: Protein of u 35.3 2.7E+02 0.0058 26.5 8.6 55 40-97 6-60 (214)
35 cd06434 GT2_HAS Hyaluronan syn 34.6 12 0.00027 31.2 -0.2 16 227-242 220-235 (235)
36 PF05300 DUF737: Protein of un 32.5 4E+02 0.0087 24.5 9.3 28 47-74 103-131 (187)
37 PF14359 DUF4406: Domain of un 31.5 31 0.00066 27.8 1.6 23 273-295 16-38 (92)
38 PF14362 DUF4407: Domain of un 31.2 1.6E+02 0.0035 27.3 6.5 17 88-104 242-258 (301)
39 PRK14474 F0F1 ATP synthase sub 31.0 4.5E+02 0.0097 24.6 10.9 15 44-58 30-44 (250)
40 KOG4819 Uncharacterized conser 30.9 2.4E+02 0.0053 24.3 6.9 35 52-86 47-81 (106)
41 PF13863 DUF4200: Domain of un 30.6 2.8E+02 0.0062 22.2 7.4 39 54-92 8-46 (126)
42 PF06212 GRIM-19: GRIM-19 prot 30.2 2.3E+02 0.0051 24.6 6.9 38 54-91 60-97 (130)
43 PF09831 DUF2058: Uncharacteri 29.2 3.3E+02 0.0071 25.0 7.9 12 38-49 11-22 (177)
44 PF14799 FAM195: FAM195 family 27.4 27 0.00058 28.9 0.7 12 291-302 81-92 (99)
45 COG3551 Uncharacterized protei 27.4 2.9E+02 0.0063 28.3 7.8 59 41-102 318-379 (402)
46 PF03773 DUF318: Predicted per 27.0 16 0.00034 34.3 -0.8 14 216-229 58-71 (307)
47 COG0701 Predicted permeases [G 27.0 17 0.00037 35.5 -0.6 14 216-229 68-81 (317)
48 cd03401 Band_7_prohibitin Band 27.0 1.7E+02 0.0037 24.9 5.5 31 67-97 156-186 (196)
49 PF15437 PGBA_C: Plasminogen-b 26.6 3.2E+02 0.007 22.9 6.7 23 75-97 58-81 (86)
50 COG3566 Uncharacterized protei 26.5 86 0.0019 31.9 4.0 19 51-69 246-264 (379)
51 PF12848 ABC_tran_2: ABC trans 26.1 2.8E+02 0.006 20.7 5.9 16 11-26 6-21 (85)
52 PRK11091 aerobic respiration c 26.1 4.4E+02 0.0095 27.1 9.1 15 88-102 138-152 (779)
53 COG4942 Membrane-bound metallo 25.8 7.7E+02 0.017 25.6 10.6 12 193-204 338-349 (420)
54 PF08606 Prp19: Prp19/Pso4-lik 25.7 3.5E+02 0.0077 21.7 9.4 30 72-101 38-67 (70)
55 PRK11091 aerobic respiration c 25.7 7.5E+02 0.016 25.5 10.7 38 55-92 112-149 (779)
56 TIGR03495 phage_LysB phage lys 25.0 4.8E+02 0.01 23.0 8.9 57 44-100 24-87 (135)
57 PF08212 Lipocalin_2: Lipocali 23.3 58 0.0013 27.0 1.9 23 269-291 115-137 (143)
58 cd03405 Band_7_HflC Band_7_Hfl 23.1 5.2E+02 0.011 22.7 9.6 6 84-89 199-204 (242)
59 KOG4721 Serine/threonine prote 22.7 1.2E+02 0.0025 33.6 4.4 18 76-93 451-468 (904)
60 PF10168 Nup88: Nuclear pore c 21.2 7.2E+02 0.016 27.1 9.9 36 62-97 584-619 (717)
61 PF05155 Phage_X: Phage X fami 20.5 74 0.0016 25.8 2.0 28 269-296 33-60 (92)
62 PF03879 Cgr1: Cgr1 family; I 20.4 5.5E+02 0.012 22.0 7.5 45 45-91 43-88 (108)
No 1
>PF06217 GAGA_bind: GAGA binding protein-like family; InterPro: IPR010409 This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA []. It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.
Probab=100.00 E-value=6.3e-121 Score=850.10 Aligned_cols=291 Identities=53% Similarity=0.868 Sum_probs=254.5
Q ss_pred CCCcccccccccccccCCCcccccCCCCCCCCchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 2 DDGHHENGRYKMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERNIALTEKREALETRDQALEERDK 81 (311)
Q Consensus 2 d~g~~engR~k~d~yk~~~~~w~m~~~~~~K~~~~~~vMn~ki~aaiaERD~AI~ERd~AIaERD~AiaERD~AiaERD~ 81 (311)
|+|++| ||+. ||+-. . ++|.. |+.+||++|+|||.||.||+.||+|++.|+++||+||++||.
T Consensus 3 ddg~~~--R~wg-~ye~~--~-------s~K~h-----LGLqlMs~maERDaai~er~~al~ekk~a~aeRDma~~qRD~ 65 (301)
T PF06217_consen 3 DDGSLE--RNWG-YYEPQ--N-------SMKGH-----LGLQLMSIMAERDAAIRERNLALSEKKAAFAERDMAYLQRDA 65 (301)
T ss_pred Cccccc--cCcc-ccccc--c-------ccccc-----ccceeeccccccCcccccccchhccccccccchhhhhhhhhh
Confidence 456777 9999 99911 2 22321 345599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCccCCCccccCCCCCC-CCCcc-cCCCCCCCCCCCCCccCCCCCC-
Q 021524 82 ALAERDDALMARDSALAALQYREAAAN--FSSVGGFQRGGKRMHHPTYQS-GDVPE-ALNSGDMHATDAKPITIIPSET- 156 (311)
Q Consensus 82 AIaERD~AIaERD~AlaaL~~Ren~~n--~~p~~~~~~g~K~~hh~~~~~-~~~~e-~~~~~e~~~~~a~p~s~~~~e~- 156 (311)
||+|||+||+|||++|++|++++++++ +|++|++.+|+|++||+++++ .++.+ .|++.++++.+++||++.+++.
T Consensus 66 aiaern~ai~ERd~a~a~l~~~~~~~n~~~p~~~~~~~~tk~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 145 (301)
T PF06217_consen 66 AIAERNNAIMERDNAIAALQPRNNNGNHHCPPGCGILPGTKHIHHMQQHHHPQLQPPPYSTREMHNIDAPPISTAPPESK 145 (301)
T ss_pred hhccchhhcccchhhhhhccccCCCccccCCCCCcccCCCccCCCcccccccccCCCCCCccccccccccccccCCcccc
Confidence 999999999999999999999999976 889999999999999988744 47777 8889999999999998877666
Q ss_pred CcchhhhhhcccccCCCCCCCcccccccccccccccCCC--ccccccccccC-CCcceeccCCCCCccceeccCCCcccc
Q 021524 157 KPHQAKRAKENKIVTKPSVSPRKVKKVGEDLNKKVASDG--KKIKSEWDSQD-GLNLVNFDETTMPVPVCTCTGTPHQCY 233 (311)
Q Consensus 157 k~~~~kr~k~~~~~~k~~k~~~k~kk~~~d~n~~~~s~g--~~~~~~~~~~~-~~n~~~~d~s~~p~p~csctg~~~~cy 233 (311)
++++.|+.+..+. .|. ++++|+||.+.+.|+.+..++ ...+.+||++| |||+|+||+|+||||||||||+|||||
T Consensus 146 ~~~~~k~~~~~~~-~k~-~k~~k~kk~~~~~~~~~~~~~~~~~~k~~~k~~dl~in~i~~D~s~mP~PvCSCTG~pqqCY 223 (301)
T PF06217_consen 146 KSKPPKKRKRPKS-PKS-PKPKKPKKKPSVPNRNVNPPGSDQRSKPEKKNQDLVINGINFDESTMPIPVCSCTGVPQQCY 223 (301)
T ss_pred cCCCCCCCCCCCC-CCC-CCCCCCCCCCCCchhhccccccccccccccccccccccceeeccCCCCCcccccCCCCcccc
Confidence 5545443333321 132 335577777777776655445 68999999999 999999999999999999999999999
Q ss_pred ccCCCcccccccccccccccCCCCCCCCcccccccccchHHHHHHHHHHhhccCCCCCcccchhHhhhhCCcceeecC
Q 021524 234 KWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYITIK 311 (311)
Q Consensus 234 ~wg~ggwqs~cctt~~s~yplp~~~~kr~ar~~grkms~~af~kll~rla~eg~~~s~p~dlk~~wakhgtnr~itik 311 (311)
||||||||||||||+||||||||+||||||||||||||+|||+|||+|||+||||||+|||||+||||||||||||||
T Consensus 224 rWG~GGWQSaCCTT~iSmYPLPm~~nkRgaRi~GRKMS~gAF~KlL~rLAaEGydls~PiDLK~hWAKHGTNryvTIk 301 (301)
T PF06217_consen 224 RWGNGGWQSACCTTTISMYPLPMSPNKRGARIGGRKMSGGAFKKLLERLAAEGYDLSNPIDLKDHWAKHGTNRYVTIK 301 (301)
T ss_pred ccCCCccccccccccccccccCCCCCCCccccccccccHHHHHHHHHHHHhcccccCCccchHHHHHhcCCcceEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>PF06217 GAGA_bind: GAGA binding protein-like family; InterPro: IPR010409 This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA []. It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.
Probab=99.02 E-value=5.2e-11 Score=112.91 Aligned_cols=57 Identities=32% Similarity=0.519 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021524 45 MAILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAAN 108 (311)
Q Consensus 45 ~aaiaERD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~AlaaL~~Ren~~n 108 (311)
+.+|+ .++|||.||.||+.||+|+..|+++||.|+.+||.||++|++|| .+|+++++
T Consensus 26 LqlMs----~maERDaai~er~~al~ekk~a~aeRDma~~qRD~aiaern~ai---~ERd~a~a 82 (301)
T PF06217_consen 26 LQLMS----IMAERDAAIRERNLALSEKKAAFAERDMAYLQRDAAIAERNNAI---MERDNAIA 82 (301)
T ss_pred ceeec----cccccCcccccccchhccccccccchhhhhhhhhhhhccchhhc---ccchhhhh
Confidence 36777 77788888888888888888888888888888888888888877 77777776
No 3
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.33 E-value=0.00099 Score=66.89 Aligned_cols=58 Identities=19% Similarity=0.365 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 45 MAILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAALQY 102 (311)
Q Consensus 45 ~aaiaERD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~AlaaL~~ 102 (311)
..++..|+.+++.|.+|..+++.+|.+||.-|.++|.+|+.|++.|.+|+..+..|+.
T Consensus 209 ~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt 266 (499)
T COG4372 209 ANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLET 266 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999999999999877654
No 4
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.05 E-value=0.029 Score=56.73 Aligned_cols=51 Identities=20% Similarity=0.375 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 47 ILAERDAAIRERNIALTEKREALE-------TRDQALEERDKALAERDDALMARDSAL 97 (311)
Q Consensus 47 aiaERD~AI~ERd~AIaERD~Aia-------ERD~AiaERD~AIaERD~AIaERD~Al 97 (311)
-|++++..++.|..|+..|++-++ +++.+|.+||.-|.+++.+|+.|++.|
T Consensus 197 ~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I 254 (499)
T COG4372 197 QIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQI 254 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 366777766666666666665555 455555555555666666666677666
No 5
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=95.48 E-value=0.056 Score=57.76 Aligned_cols=21 Identities=43% Similarity=0.572 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021524 75 ALEERDKALAERDDALMARDS 95 (311)
Q Consensus 75 AiaERD~AIaERD~AIaERD~ 95 (311)
+.+|++.++..||.|++|||.
T Consensus 552 a~AE~E~aLRLREeA~aER~~ 572 (828)
T PF04094_consen 552 AAAEEESALRLREEALAERDR 572 (828)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 333333333334444443333
No 6
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=95.32 E-value=0.066 Score=57.23 Aligned_cols=48 Identities=38% Similarity=0.491 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 50 ERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSAL 97 (311)
Q Consensus 50 ERD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~Al 97 (311)
+|+.++.+|+..|+...++.+|++.+|..||.|++|||.++.+++.+.
T Consensus 534 ~Re~a~a~Re~TLAahEaa~AE~E~aLRLREeA~aER~~~~~~aEaaa 581 (828)
T PF04094_consen 534 ERERAAAQREATLAAHEAAAAEEESALRLREEALAERDRALNRAEAAA 581 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455555555555555555555555555555444
No 7
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=91.00 E-value=1.9 Score=43.90 Aligned_cols=52 Identities=17% Similarity=0.404 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 49 AERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAAL 100 (311)
Q Consensus 49 aERD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~AlaaL 100 (311)
.+|+..|..|+..|.+|...|..|+..|..|+..|.++...|.++...+.++
T Consensus 72 ~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~ 123 (514)
T TIGR03319 72 KERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEK 123 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555555555544443
No 8
>PRK12704 phosphodiesterase; Provisional
Probab=89.98 E-value=2.7 Score=42.92 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 51 RDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSAL 97 (311)
Q Consensus 51 RD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~Al 97 (311)
|...|.+|+..|.+|...|..|...|.+|+..|.+|++.|.++...+
T Consensus 80 ~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eL 126 (520)
T PRK12704 80 RRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQEL 126 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555554444444444433
No 9
>PRK12704 phosphodiesterase; Provisional
Probab=86.77 E-value=5.5 Score=40.77 Aligned_cols=54 Identities=24% Similarity=0.420 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 46 AILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAA 99 (311)
Q Consensus 46 aaiaERD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~Alaa 99 (311)
.-+.+|+..|.+|...|..|...|.+|+..|.+|...|.++.+.+.+++..+.+
T Consensus 82 ~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~ 135 (520)
T PRK12704 82 NELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEE 135 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666666666666666554433
No 10
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=84.89 E-value=7.7 Score=39.68 Aligned_cols=54 Identities=22% Similarity=0.423 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 45 MAILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALA 98 (311)
Q Consensus 45 ~aaiaERD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~Ala 98 (311)
..-+.+|+..|..|...|..|...|.+|+..|.++...|.+|...+.++...+.
T Consensus 75 e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~ 128 (514)
T TIGR03319 75 RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELE 128 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666666666666666666665555544433
No 11
>PRK00106 hypothetical protein; Provisional
Probab=84.42 E-value=8.8 Score=39.90 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=18.6
Q ss_pred cccccccccchHHHHHHHHHHhh
Q 021524 262 HARVGGRKMSGSVFTKLLSRLAA 284 (311)
Q Consensus 262 ~ar~~grkms~~af~kll~rla~ 284 (311)
.+|.|-|.+|...|-+.|+.|-.
T Consensus 443 a~Rpgar~~s~~~~i~rl~~lE~ 465 (535)
T PRK00106 443 SARPGARNESMENYIKRLRDLEE 465 (535)
T ss_pred cCCCCCCcCCHHHHHHHHHHHHH
Confidence 35678888999999999988854
No 12
>PRK00106 hypothetical protein; Provisional
Probab=84.01 E-value=6.3 Score=40.92 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=12.2
Q ss_pred cceeccCCCccccccCCCccccc
Q 021524 221 PVCTCTGTPHQCYKWGNGGWQSS 243 (311)
Q Consensus 221 p~csctg~~~~cy~wg~ggwqs~ 243 (311)
-...+-|-.+.=+..|..-|+.|
T Consensus 333 e~~~~lg~l~~r~sy~qnl~~HS 355 (535)
T PRK00106 333 DLIKIMGRLQFRTSYGQNVLRHS 355 (535)
T ss_pred HHHHHHHHHhhhccCCCcHHHHH
Confidence 34445555544444555567665
No 13
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=78.15 E-value=25 Score=31.41 Aligned_cols=8 Identities=38% Similarity=0.567 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 021524 90 LMARDSAL 97 (311)
Q Consensus 90 IaERD~Al 97 (311)
+.++...+
T Consensus 122 l~~~~~e~ 129 (201)
T PF12072_consen 122 LEEREEEL 129 (201)
T ss_pred HHHHHHHH
Confidence 33333333
No 14
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=75.17 E-value=26 Score=31.28 Aligned_cols=49 Identities=22% Similarity=0.425 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 48 LAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSA 96 (311)
Q Consensus 48 iaERD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~A 96 (311)
-.+-+.++.+|...+..+..-|.+|...|..|...+..|+..|.+++..
T Consensus 66 r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~ 114 (201)
T PF12072_consen 66 RQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEE 114 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555555555555555555444444
No 15
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=73.21 E-value=35 Score=29.73 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021524 44 IMAILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAAN 108 (311)
Q Consensus 44 i~aaiaERD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~AlaaL~~Ren~~n 108 (311)
|+.+..-|-.-.+-|+..|++=..++..-+.++.||.....+....+++|...|+++..--...+
T Consensus 5 lk~l~niR~lra~~re~~~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~~G 69 (135)
T PRK10947 5 LKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADG 69 (135)
T ss_pred HHHHHhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444445555556777777778888888888888888888888888888888877665443333
No 16
>PRK12705 hypothetical protein; Provisional
Probab=71.39 E-value=39 Score=35.07 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=19.3
Q ss_pred cccccccccchHHHHHHHHHHhhcc
Q 021524 262 HARVGGRKMSGSVFTKLLSRLAAEG 286 (311)
Q Consensus 262 ~ar~~grkms~~af~kll~rla~eg 286 (311)
.+|.|.|.+|...|.+.|+.|-.-|
T Consensus 416 aaRpGar~~s~e~yv~rL~~le~i~ 440 (508)
T PRK12705 416 AARPGARRESLDEYVQRLEELEQIA 440 (508)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHh
Confidence 3577888889999999998875444
No 17
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.46 E-value=60 Score=28.90 Aligned_cols=56 Identities=27% Similarity=0.369 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 021524 44 IMAILAERDAAIRERNIALTEKREALETRDQALE-------ERDKALAERDDALMARDSALAA 99 (311)
Q Consensus 44 i~aaiaERD~AI~ERd~AIaERD~AiaERD~Aia-------ERD~AIaERD~AIaERD~Alaa 99 (311)
++..+.+-...|.+...-+.++..++..|...+. .+...+.+....+.++...+..
T Consensus 75 l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 137 (302)
T PF10186_consen 75 LRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQ 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444554555544444433 3334444444555555555444
No 18
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=68.84 E-value=72 Score=28.42 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=11.6
Q ss_pred ccchHHHHHHHHHHh--------hccCCCC
Q 021524 269 KMSGSVFTKLLSRLA--------AEGHDLS 290 (311)
Q Consensus 269 kms~~af~kll~rla--------~eg~~~s 290 (311)
..+-..|..-+..|. ..|.++.
T Consensus 251 ~~~~~~f~~~v~lLn~nI~~L~~~q~~~~~ 280 (302)
T PF10186_consen 251 GVDRQRFEYAVFLLNKNIAQLCFSQGIDVP 280 (302)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 344556655444443 4566665
No 19
>cd00374 RNase_T2 Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen.
Probab=67.53 E-value=6.3 Score=33.67 Aligned_cols=30 Identities=33% Similarity=0.359 Sum_probs=21.6
Q ss_pred HHHHHHHHhhccCCCCCc--ccch-hHhhhhCC
Q 021524 275 FTKLLSRLAAEGHDLSVP--LDLK-NFWAKHGT 304 (311)
Q Consensus 275 f~kll~rla~eg~~~s~p--~dlk-~~wakhgt 304 (311)
...|+..|...=-||..+ -+|- .-|.||||
T Consensus 60 ~~~l~~~l~~~w~~~~~~~~~~fw~hEW~KHGT 92 (195)
T cd00374 60 DSDLLDELNKYWPDLMPGKDSSFWKHEWNKHGT 92 (195)
T ss_pred cHHHHHHHHhhCcccCCCCCchHHHHHHhcCce
Confidence 346777787777788776 5555 44899998
No 20
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=64.65 E-value=66 Score=28.03 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021524 44 IMAILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREA 105 (311)
Q Consensus 44 i~aaiaERD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~AlaaL~~Ren 105 (311)
|+.+..-|-.-.+-|+..|++=..++..-+.++.||.....+-.....+|..+|+++..--.
T Consensus 5 lk~l~n~R~lra~~re~~~e~Lee~~ekl~~vv~er~~~~~~~~~~~~er~~~l~~i~~~~~ 66 (134)
T PRK10328 5 LQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKINTWLELMK 66 (134)
T ss_pred HHHHhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555556777777777888888888888888877777888888888877766433
No 21
>PRK12705 hypothetical protein; Provisional
Probab=63.87 E-value=65 Score=33.52 Aligned_cols=43 Identities=33% Similarity=0.538 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 55 IRERNIALTEKREALETRDQALEERDKALAERDDALMARDSAL 97 (311)
Q Consensus 55 I~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~Al 97 (311)
+..++.-|.+|...+..|...+..|+..+.++++.|..+...+
T Consensus 79 ~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 121 (508)
T PRK12705 79 LQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELEL 121 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444444433
No 22
>PF13300 DUF4078: Domain of unknown function (DUF4078)
Probab=58.52 E-value=53 Score=26.90 Aligned_cols=9 Identities=11% Similarity=0.110 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 021524 44 IMAILAERD 52 (311)
Q Consensus 44 i~aaiaERD 52 (311)
+..+...|+
T Consensus 49 me~L~~~R~ 57 (88)
T PF13300_consen 49 MEELEELRK 57 (88)
T ss_pred HHHHHHHHH
Confidence 334444443
No 23
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=55.51 E-value=44 Score=29.12 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 44 IMAILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAALQY 102 (311)
Q Consensus 44 i~aaiaERD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~AlaaL~~ 102 (311)
++++.. +..+.+=+.++.-=+.++.||.....+..++++||..+|.+--..+++...
T Consensus 14 lra~~r--e~~~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~~Gi 70 (135)
T PRK10947 14 LRAQAR--ECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGI 70 (135)
T ss_pred HHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444443 333444444444445555555555555555666666666666555544443
No 24
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=53.19 E-value=1.7e+02 Score=26.19 Aligned_cols=61 Identities=23% Similarity=0.090 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHH-------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 021524 42 KKIMAILAERDAAIRER-NIALTEKRE-------ALETRDQALEERDKALAE-RDDALMARDSALAALQY 102 (311)
Q Consensus 42 ~ki~aaiaERD~AI~ER-d~AIaERD~-------AiaERD~AiaERD~AIaE-RD~AIaERD~AlaaL~~ 102 (311)
++|..+|.+|...|.+- +.|-..+.+ .-++...|-++.+....| ||.+.++=+...++++.
T Consensus 33 ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea 102 (155)
T PRK06569 33 PKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQ 102 (155)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999998866542 222222322 223333344444444455 66666665555555544
No 25
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=52.72 E-value=52 Score=28.64 Aligned_cols=46 Identities=22% Similarity=0.246 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 54 AIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAA 99 (311)
Q Consensus 54 AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~Alaa 99 (311)
.|.+=+.++..=+..+.||.....+-.++..||..+|++-...+++
T Consensus 22 ~~e~Lee~~ekl~~vv~er~~~~~~~~~~~~er~~~l~~i~~~~~~ 67 (134)
T PRK10328 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKINTWLELMKA 67 (134)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444445555555555555555543
No 26
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification]
Probab=47.16 E-value=17 Score=35.18 Aligned_cols=64 Identities=31% Similarity=0.651 Sum_probs=44.7
Q ss_pred CccceeccCCCccccc-------c---------CCCcccccccccccccccCCCCCCCCcccccccccchHHHHHHHHHH
Q 021524 219 PVPVCTCTGTPHQCYK-------W---------GNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRL 282 (311)
Q Consensus 219 p~p~csctg~~~~cy~-------w---------g~ggwqs~cctt~~s~yplp~~~~kr~ar~~grkms~~af~kll~rl 282 (311)
|.-+| -....-||. | -+|||++-|=-+. + .=-+-|+-|+.+|
T Consensus 42 P~~~C--d~~~~~C~~~~G~~a~ftIHGLWP~~~~G~~P~~Cn~s~---------------~-----Fd~~~isdl~~~L 99 (263)
T KOG1642|consen 42 PGAYC--DSQRTCCYPPSGKPADFTIHGLWPDYNHGSWPQNCNRSS---------------Q-----FDDSKISDLEDSL 99 (263)
T ss_pred CCccc--cCCccccCCCCCCccceEEeeeccCCCCCCCcccCCCcc---------------c-----CChHHccchhhhH
Confidence 44444 677777774 3 3799998774332 1 2334577899999
Q ss_pred hhccCCCCCccc-------chhHhhhhCC
Q 021524 283 AAEGHDLSVPLD-------LKNFWAKHGT 304 (311)
Q Consensus 283 a~eg~~~s~p~d-------lk~~wakhgt 304 (311)
..+=-||+-|-- -|--|-||||
T Consensus 100 ~~~Wp~L~~~s~n~g~~~fW~HEweKHGT 128 (263)
T KOG1642|consen 100 EKEWPDLYCPSPNGGHESFWKHEWEKHGT 128 (263)
T ss_pred HhhccccccCCCCCccchhhhhhhhccCc
Confidence 999999998874 2456899999
No 27
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=45.79 E-value=1.2e+02 Score=26.27 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 60 IALTEKREALETRDQALEERDKALAERDDALMARDSAL 97 (311)
Q Consensus 60 ~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~Al 97 (311)
.+++++..-|+=-=-.++|+|+.+..+-.+-.++|+.|
T Consensus 59 ~~~E~~~ar~al~PlLqAE~DR~~lr~~~~~~~~E~~l 96 (130)
T PF06212_consen 59 LKREKRWARIALLPLLQAEEDRRYLRRLKANREEEAEL 96 (130)
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444566677777777777777776666
No 28
>PF13300 DUF4078: Domain of unknown function (DUF4078)
Probab=44.50 E-value=98 Score=25.37 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021524 71 TRDQALEERDKALAERDDALMA 92 (311)
Q Consensus 71 ERD~AiaERD~AIaERD~AIaE 92 (311)
+|+.....|+.+|.+|-+.|.+
T Consensus 65 ~re~~k~~R~~~~~~R~~~ir~ 86 (88)
T PF13300_consen 65 KREELKEKREKELEERLKKIRE 86 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444433
No 29
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=39.82 E-value=1.4e+02 Score=30.75 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021524 82 ALAERDDALMARDSALAALQ 101 (311)
Q Consensus 82 AIaERD~AIaERD~AlaaL~ 101 (311)
+-.||-.|+++|..+.++..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~ 384 (429)
T PRK00247 365 ARQERAAAMARARARRAAVK 384 (429)
T ss_pred hhhhHHHHHHHHHHHHHHHh
Confidence 33445555555544443333
No 30
>COG3551 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.63 E-value=96 Score=31.58 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021524 75 ALEERDKALAERDDALMARDSAL 97 (311)
Q Consensus 75 AiaERD~AIaERD~AIaERD~Al 97 (311)
.|+|||+-+.+||..-++|++.|
T Consensus 359 ~lAE~D~LLRD~~~~~~~~~AiL 381 (402)
T COG3551 359 NLAETDNLLRDRDDTHARLMAIL 381 (402)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHH
Confidence 44444444444444444444443
No 31
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=38.75 E-value=2e+02 Score=25.35 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 46 AILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYR 103 (311)
Q Consensus 46 aaiaERD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~AlaaL~~R 103 (311)
..+.+.+..+.+....|.+=..-++.....+.+++..|.+++.++..-...+.+|+-.
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~ 159 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQ 159 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666777777777777777777777666666653
No 32
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=37.63 E-value=3e+02 Score=24.63 Aligned_cols=35 Identities=14% Similarity=-0.063 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 021524 66 REALETRDQALEE-RDKALAERDDALMARDSALAAL 100 (311)
Q Consensus 66 D~AiaERD~AiaE-RD~AIaERD~AIaERD~AlaaL 100 (311)
..|-++.+...++ ||.+.++=+.....-+..|..+
T Consensus 72 ~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~ 107 (155)
T PRK06569 72 DKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNS 107 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455 6666665555555444444443
No 33
>PF00445 Ribonuclease_T2: Ribonuclease T2 family; InterPro: IPR001568 The fungal ribonucleases T2 from Aspergillus oryzae, M from Aspergillus saitoi and Rh from Rhizopus niveus are structurally and functionally related 30 Kd glycoproteins [] that cleave the 3'-5' internucleotide linkage of RNA via a nucleotide 2',3'-cyclic phosphate intermediate (3.1.27.1 from EC). Two histidines residues have been shown [, ] to be involved in the catalytic mechanism of RNase T2 and Rh. These residues and the region around them are highly conserved in a number of other RNAses that have been found to be evolutionary related to these fungal enzymes.; GO: 0003723 RNA binding, 0033897 ribonuclease T2 activity; PDB: 1IOO_A 3D3Z_A 1UCG_B 1UCC_A 1J1F_A 1V9H_A 1UCD_A 1J1G_A 1UCA_A 1BK7_A ....
Probab=36.65 E-value=22 Score=30.51 Aligned_cols=28 Identities=36% Similarity=0.401 Sum_probs=19.3
Q ss_pred HHHHHHhhccCCCCCcc--cchh-HhhhhCC
Q 021524 277 KLLSRLAAEGHDLSVPL--DLKN-FWAKHGT 304 (311)
Q Consensus 277 kll~rla~eg~~~s~p~--dlk~-~wakhgt 304 (311)
.|+..|...=-+|..+- +|=. -|.||||
T Consensus 65 ~~~~~L~~~Wp~~~~~~~~~fw~hEW~KHGt 95 (189)
T PF00445_consen 65 ELKSELDKYWPDLKNSNSESFWKHEWEKHGT 95 (189)
T ss_dssp GGHHHHHHHSTBSSSSHHHHHHHHHHHHTGG
T ss_pred HHhhhhhhhhhhhccchhhhhHHhcceeeeE
Confidence 56667766666676664 5544 4999998
No 34
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=35.33 E-value=2.7e+02 Score=26.45 Aligned_cols=55 Identities=27% Similarity=0.321 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 40 MNKKIMAILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSAL 97 (311)
Q Consensus 40 Mn~ki~aaiaERD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~Al 97 (311)
+.++++....|=+....+=++.|..|+.-+.+.-..+ ..|+.|||.|-..-...+
T Consensus 6 LRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll---~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 6 LRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLL---KKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777777666654433 235666666655555444
No 35
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=34.60 E-value=12 Score=31.16 Aligned_cols=16 Identities=25% Similarity=0.659 Sum_probs=13.8
Q ss_pred CCCccccccCCCcccc
Q 021524 227 GTPHQCYKWGNGGWQS 242 (311)
Q Consensus 227 g~~~~cy~wg~ggwqs 242 (311)
...+|++||..|+|+|
T Consensus 220 ~~~~q~~Rw~~~~~~~ 235 (235)
T cd06434 220 KFLKQQLRWSRSNWRS 235 (235)
T ss_pred HHHHHhhhhhhcccCC
Confidence 4567999999999987
No 36
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=32.47 E-value=4e+02 Score=24.53 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 021524 47 ILAERDAAIRERNIALT-EKREALETRDQ 74 (311)
Q Consensus 47 aiaERD~AI~ERd~AIa-ERD~AiaERD~ 74 (311)
+-.||.+|-.....||. ||-.+-.||-.
T Consensus 103 a~rEReAa~e~l~~ai~rer~~~~~E~~k 131 (187)
T PF05300_consen 103 AQREREAAAEHLTRAILRERASTEQERQK 131 (187)
T ss_pred HHHHHHHHHhhhHHHHHHhhhcchhHHHH
Confidence 33444444444333333 44444444443
No 37
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=31.53 E-value=31 Score=27.78 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhccCCCCCcccc
Q 021524 273 SVFTKLLSRLAAEGHDLSVPLDL 295 (311)
Q Consensus 273 ~af~kll~rla~eg~~~s~p~dl 295 (311)
.+|.+.-.+|.++||..-||+.+
T Consensus 16 ~~f~~~a~~L~~~G~~vvnPa~~ 38 (92)
T PF14359_consen 16 PAFNAAAKRLRAKGYEVVNPAEL 38 (92)
T ss_pred HHHHHHHHHHHHCCCEEeCchhh
Confidence 68999999999999999999998
No 38
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=31.23 E-value=1.6e+02 Score=27.30 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021524 88 DALMARDSALAALQYRE 104 (311)
Q Consensus 88 ~AIaERD~AlaaL~~Re 104 (311)
.-+++|..|+.+|-..+
T Consensus 242 ~G~l~R~~Al~~L~~~~ 258 (301)
T PF14362_consen 242 DGFLARLEALWELTKED 258 (301)
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 34667777776666433
No 39
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=30.98 E-value=4.5e+02 Score=24.57 Aligned_cols=15 Identities=27% Similarity=0.596 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH
Q 021524 44 IMAILAERDAAIRER 58 (311)
Q Consensus 44 i~aaiaERD~AI~ER 58 (311)
|..+|.+|...|...
T Consensus 30 i~~~l~eR~~~I~~~ 44 (250)
T PRK14474 30 IIQVMKKRQQRIANR 44 (250)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888888877654
No 40
>KOG4819 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.87 E-value=2.4e+02 Score=24.29 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 52 DAAIRERNIALTEKREALETRDQALEERDKALAER 86 (311)
Q Consensus 52 D~AI~ERd~AIaERD~AiaERD~AiaERD~AIaER 86 (311)
...-+||...-++||+++++=..--.+-..||..|
T Consensus 47 a~k~~Ere~~r~~R~e~~~aykKkr~e~~kal~Kr 81 (106)
T KOG4819|consen 47 AQKAAEREKVRADRDEQVKAYKKKRLEKTKALSKR 81 (106)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444333333444444443
No 41
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=30.62 E-value=2.8e+02 Score=22.20 Aligned_cols=39 Identities=28% Similarity=0.513 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 54 AIRERNIALTEKREALETRDQALEERDKALAERDDALMA 92 (311)
Q Consensus 54 AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaE 92 (311)
.+.+-+.+|..+...+..+...+.+|...|.+++.-|.+
T Consensus 8 e~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~ 46 (126)
T PF13863_consen 8 EMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEE 46 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444433
No 42
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=30.18 E-value=2.3e+02 Score=24.61 Aligned_cols=38 Identities=21% Similarity=0.102 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 54 AIRERNIALTEKREALETRDQALEERDKALAERDDALM 91 (311)
Q Consensus 54 AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIa 91 (311)
.++++..-|+===--+||+|+.+..+-.+..++++.|+
T Consensus 60 ~~E~~~ar~al~PlLqAE~DR~~lr~~~~~~~~E~~lM 97 (130)
T PF06212_consen 60 KREKRWARIALLPLLQAEEDRRYLRRLKANREEEAELM 97 (130)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344333333333334444444444444444444443
No 43
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=29.24 E-value=3.3e+02 Score=24.97 Aligned_cols=12 Identities=33% Similarity=0.160 Sum_probs=5.9
Q ss_pred HHhHHHHHHHHH
Q 021524 38 LVMNKKIMAILA 49 (311)
Q Consensus 38 ~vMn~ki~aaia 49 (311)
||-.+|++.+-.
T Consensus 11 Lv~~kkakka~~ 22 (177)
T PF09831_consen 11 LVDKKKAKKAKK 22 (177)
T ss_pred CccHHHHHHHHH
Confidence 444555554444
No 44
>PF14799 FAM195: FAM195 family
Probab=27.37 E-value=27 Score=28.93 Aligned_cols=12 Identities=33% Similarity=1.085 Sum_probs=10.8
Q ss_pred CcccchhHhhhh
Q 021524 291 VPLDLKNFWAKH 302 (311)
Q Consensus 291 ~p~dlk~~wakh 302 (311)
.|+||-++|+++
T Consensus 81 kPfDLE~wW~~R 92 (99)
T PF14799_consen 81 KPFDLEEWWGQR 92 (99)
T ss_pred cccCHHHHHHHH
Confidence 599999999986
No 45
>COG3551 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.35 E-value=2.9e+02 Score=28.28 Aligned_cols=59 Identities=29% Similarity=0.319 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 41 NKKIMAILAERDA--AIRERNIALTEKREALETRDQAL-EERDKALAERDDALMARDSALAALQY 102 (311)
Q Consensus 41 n~ki~aaiaERD~--AI~ERd~AIaERD~AiaERD~Ai-aERD~AIaERD~AIaERD~AlaaL~~ 102 (311)
|.++...+.|--. +..||+.-..-| +-+++||+.+ +|| -|+|||+.+-+||.--+.|..
T Consensus 318 N~~L~~~L~e~~~R~~~~ER~~~~~sR-~L~~~Re~LVsAQ~--~lAE~D~LLRD~~~~~~~~~A 379 (402)
T COG3551 318 NDGLRDRLLEAGARDEQNERAMRELSR-RLSVCREELVSAQR--NLAETDNLLRDRDDTHARLMA 379 (402)
T ss_pred hhhHHHHHHHhhcchhhhHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHhhhhhhHHHHHHH
Confidence 5555544443111 234555444444 5555666533 344 677777777777766654443
No 46
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=27.02 E-value=16 Score=34.25 Aligned_cols=14 Identities=36% Similarity=0.925 Sum_probs=11.5
Q ss_pred CCCCccceeccCCC
Q 021524 216 TTMPVPVCTCTGTP 229 (311)
Q Consensus 216 s~~p~p~csctg~~ 229 (311)
.+++.|+|+|..+|
T Consensus 58 ~G~~~p~C~c~~~P 71 (307)
T PF03773_consen 58 LGALLPVCSCGAVP 71 (307)
T ss_pred HHhccCCCcccHHH
Confidence 47899999998765
No 47
>COG0701 Predicted permeases [General function prediction only]
Probab=27.00 E-value=17 Score=35.51 Aligned_cols=14 Identities=36% Similarity=1.009 Sum_probs=11.5
Q ss_pred CCCCccceeccCCC
Q 021524 216 TTMPVPVCTCTGTP 229 (311)
Q Consensus 216 s~~p~p~csctg~~ 229 (311)
.+.+-|+|||+-+|
T Consensus 68 ~G~~~p~CsC~~vP 81 (317)
T COG0701 68 LGLLLPVCSCGAVP 81 (317)
T ss_pred HcccchhhhcccHH
Confidence 47789999999765
No 48
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=26.99 E-value=1.7e+02 Score=24.86 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 67 EALETRDQALEERDKALAERDDALMARDSAL 97 (311)
Q Consensus 67 ~AiaERD~AiaERD~AIaERD~AIaERD~Al 97 (311)
.||.++..|.++..+|-.+...|-+|++..+
T Consensus 156 ~ai~~k~~a~q~~~~a~~~~~~a~~ea~~~~ 186 (196)
T cd03401 156 KAVEAKQVAQQEAERAKFVVEKAEQEKQAAV 186 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666555555555555555544
No 49
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=26.56 E-value=3.2e+02 Score=22.85 Aligned_cols=23 Identities=43% Similarity=0.569 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHH
Q 021524 75 ALEERDKALAERD-DALMARDSAL 97 (311)
Q Consensus 75 AiaERD~AIaERD-~AIaERD~Al 97 (311)
-+.||...-.||| ..+.+|..||
T Consensus 58 EfEqRakehqErDEkElEERrKAL 81 (86)
T PF15437_consen 58 EFEQRAKEHQERDEKELEERRKAL 81 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444433 2344444444
No 50
>COG3566 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.50 E-value=86 Score=31.87 Aligned_cols=19 Identities=32% Similarity=0.120 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021524 51 RDAAIRERNIALTEKREAL 69 (311)
Q Consensus 51 RD~AI~ERd~AIaERD~Ai 69 (311)
+|...+|-+.|++++|+|.
T Consensus 246 ~dakkaeL~Ka~aaleaan 264 (379)
T COG3566 246 LDAKKAELSKALAALEAAN 264 (379)
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3333333333333333333
No 51
>PF12848 ABC_tran_2: ABC transporter
Probab=26.13 E-value=2.8e+02 Score=20.71 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=10.6
Q ss_pred cccccccCCCcccccC
Q 021524 11 YKMEYYKGTHAQWNMM 26 (311)
Q Consensus 11 ~k~d~yk~~~~~w~m~ 26 (311)
.+..+|.|..+.|+.+
T Consensus 6 ~~l~~Y~GnY~~y~~~ 21 (85)
T PF12848_consen 6 GKLTEYPGNYSDYLEQ 21 (85)
T ss_pred CEeEEeCCCHHHHHHH
Confidence 3556788887776544
No 52
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=26.10 E-value=4.4e+02 Score=27.14 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 021524 88 DALMARDSALAALQY 102 (311)
Q Consensus 88 ~AIaERD~AlaaL~~ 102 (311)
..|.+|..+..+|+.
T Consensus 138 ~~i~~r~~~~~~l~~ 152 (779)
T PRK11091 138 NEIKEREETQIELEQ 152 (779)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 53
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=25.81 E-value=7.7e+02 Score=25.63 Aligned_cols=12 Identities=25% Similarity=0.783 Sum_probs=5.6
Q ss_pred CCCccccccccc
Q 021524 193 SDGKKIKSEWDS 204 (311)
Q Consensus 193 s~g~~~~~~~~~ 204 (311)
.+|.++-.+|-.
T Consensus 338 AdG~VvyA~~l~ 349 (420)
T COG4942 338 ADGRVVYADWLR 349 (420)
T ss_pred cCceEEechhhc
Confidence 344455555543
No 54
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=25.75 E-value=3.5e+02 Score=21.73 Aligned_cols=30 Identities=33% Similarity=0.253 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 72 RDQALEERDKALAERDDALMARDSALAALQ 101 (311)
Q Consensus 72 RD~AiaERD~AIaERD~AIaERD~AlaaL~ 101 (311)
.-.|+-+.|+|..-=-+++.|||.+..+|.
T Consensus 38 Ls~aLYq~DAA~RViArl~kErd~ar~~l~ 67 (70)
T PF08606_consen 38 LSHALYQHDAACRVIARLLKERDEAREALA 67 (70)
T ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Confidence 333455555554444445555555555443
No 55
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=25.71 E-value=7.5e+02 Score=25.50 Aligned_cols=38 Identities=26% Similarity=0.471 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 55 IRERNIALTEKREALETRDQALEERDKALAERDDALMA 92 (311)
Q Consensus 55 I~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaE 92 (311)
+++-+..+.+|.++..++..+..+=...|.+|..+..+
T Consensus 112 ~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~ 149 (779)
T PRK11091 112 IAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIE 149 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555544444444455555544433
No 56
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=24.97 E-value=4.8e+02 Score=22.97 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 44 IMAILAERDAAIRERNIALTEKREALETRDQA-------LEERDKALAERDDALMARDSALAAL 100 (311)
Q Consensus 44 i~aaiaERD~AI~ERd~AIaERD~AiaERD~A-------iaERD~AIaERD~AIaERD~AlaaL 100 (311)
+.+-++.-..++.+-..+|.+++..|..-... -++=+.++..=+..++.|+..|..|
T Consensus 24 l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL 87 (135)
T TIGR03495 24 ARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERL 87 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555666665555333221 1111222333344555566666554
No 57
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=23.25 E-value=58 Score=26.97 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=17.2
Q ss_pred ccchHHHHHHHHHHhhccCCCCC
Q 021524 269 KMSGSVFTKLLSRLAAEGHDLSV 291 (311)
Q Consensus 269 kms~~af~kll~rla~eg~~~s~ 291 (311)
-||...+.++|.++...|||.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~G~d~~~ 137 (143)
T PF08212_consen 115 QLSEETYAEILDRAKQQGYDVSK 137 (143)
T ss_dssp S--HHHHHHHHHHHHHTT--GGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHH
Confidence 47889999999999999999875
No 58
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=23.10 E-value=5.2e+02 Score=22.74 Aligned_cols=6 Identities=33% Similarity=0.368 Sum_probs=2.2
Q ss_pred HHHHHH
Q 021524 84 AERDDA 89 (311)
Q Consensus 84 aERD~A 89 (311)
++++..
T Consensus 199 a~a~a~ 204 (242)
T cd03405 199 AYREAQ 204 (242)
T ss_pred HHHHHH
Confidence 333333
No 59
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=22.69 E-value=1.2e+02 Score=33.61 Aligned_cols=18 Identities=56% Similarity=0.745 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021524 76 LEERDKALAERDDALMAR 93 (311)
Q Consensus 76 iaERD~AIaERD~AIaER 93 (311)
|+.++..|+||++|+.+|
T Consensus 451 LelkEkElaerEq~l~rr 468 (904)
T KOG4721|consen 451 LELKEKELAEREQALERR 468 (904)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 444555555555555444
No 60
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.17 E-value=7.2e+02 Score=27.05 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 62 LTEKREALETRDQALEERDKALAERDDALMARDSAL 97 (311)
Q Consensus 62 IaERD~AiaERD~AiaERD~AIaERD~AIaERD~Al 97 (311)
+.|+...|.++...+++|=..|.+|...|+.|=..+
T Consensus 584 l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 584 LQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555554433
No 61
>PF05155 Phage_X: Phage X family ; InterPro: IPR022688 The sequences matched by this entry represent a family of phage and plasmid replication proteins. In bacteriophage IKe and related phage, the full-length protein is designated gene II protein. A much shorter protein of unknown function, translated from a conserved in-frame alternative initiator, is designated gene X protein. Members of this family also include plasmid replication proteins. ; GO: 0006260 DNA replication
Probab=20.53 E-value=74 Score=25.76 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=25.4
Q ss_pred ccchHHHHHHHHHHhhccCCCCCcccch
Q 021524 269 KMSGSVFTKLLSRLAAEGHDLSVPLDLK 296 (311)
Q Consensus 269 kms~~af~kll~rla~eg~~~s~p~dlk 296 (311)
-||-..|.+-..+|.+-|.|.+.|-||-
T Consensus 33 ~~~kstfyrhr~~L~~~GIdia~~~nl~ 60 (92)
T PF05155_consen 33 TLSKSTFYRHRARLLKIGIDIAQLQNLS 60 (92)
T ss_pred hccHHHHHHHHHHHHHcCCCHHHhcccc
Confidence 4688999999999999999999998874
No 62
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=20.37 E-value=5.5e+02 Score=21.96 Aligned_cols=45 Identities=18% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 45 MAILAERDAAI-RERNIALTEKREALETRDQALEERDKALAERDDALM 91 (311)
Q Consensus 45 ~aaiaERD~AI-~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIa 91 (311)
+.+|.++..+| .|++++..+|-.+|.+|-.+-+|+++- |.-++++
T Consensus 43 ~~~~K~~ekElKeEKe~er~~r~~~~kerr~~keEkeR~--E~~a~km 88 (108)
T PF03879_consen 43 LKAIKEKEKELKEEKEAERQRRIQRIKERRKRKEEKERY--EKMAAKM 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Done!