Query 021524
Match_columns 311
No_of_seqs 101 out of 114
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 05:23:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmd_A CGMP dependent protein 92.0 0.51 1.7E-05 36.5 7.0 43 55-97 21-63 (72)
2 3oja_B Anopheles plasmodium-re 88.0 4.1 0.00014 38.4 11.0 28 95-125 569-596 (597)
3 3he4_A Synzip6; heterodimeric 67.1 13 0.00044 27.3 5.5 36 41-81 19-54 (56)
4 3bk6_A PH stomatin; archaea, t 61.4 23 0.00079 29.1 6.9 8 44-51 118-125 (188)
5 3gp4_A Transcriptional regulat 51.6 37 0.0013 27.5 6.5 6 103-108 121-126 (142)
6 3nr7_A DNA-binding protein H-N 51.0 46 0.0016 25.9 6.6 49 54-102 18-66 (86)
7 3nr7_A DNA-binding protein H-N 47.2 52 0.0018 25.6 6.3 27 43-69 35-61 (86)
8 3he4_A Synzip6; heterodimeric 46.1 52 0.0018 24.1 5.7 35 54-88 20-54 (56)
9 2pqx_A Ribonuclease I; hydrola 39.5 21 0.00072 31.2 3.4 28 277-304 107-135 (245)
10 3cl6_A PUUE allantoinase; URIC 33.7 8.7 0.0003 34.0 -0.0 38 265-302 262-300 (308)
11 3oja_B Anopheles plasmodium-re 27.8 3.8E+02 0.013 25.0 11.0 13 116-128 584-596 (597)
12 3iox_A AGI/II, PA; alpha helix 25.8 4.3E+02 0.015 26.6 10.4 14 54-67 45-58 (497)
13 3iox_A AGI/II, PA; alpha helix 24.6 3.4E+02 0.012 27.3 9.4 14 60-73 44-57 (497)
14 1zxa_A CGMP-dependent protein 24.6 87 0.003 23.7 4.1 20 61-80 19-38 (67)
15 3iz5_T 60S ribosomal protein L 24.2 1.9E+02 0.0066 26.1 7.0 11 111-121 193-203 (209)
16 3sb1_A Hydrogenase expression 21.2 20 0.00069 30.9 0.0 33 122-154 1-37 (160)
17 3na7_A HP0958; flagellar bioge 20.9 4.1E+02 0.014 23.0 10.5 16 85-100 147-162 (256)
No 1
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=92.03 E-value=0.51 Score=36.51 Aligned_cols=43 Identities=30% Similarity=0.476 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 55 IRERNIALTEKREALETRDQALEERDKALAERDDALMARDSAL 97 (311)
Q Consensus 55 I~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~Al 97 (311)
|.+=+.||.+|++-|.++|.-|.+.+..|.|+|..|.+..+.|
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777777777777777777777776666555
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.03 E-value=4.1 Score=38.36 Aligned_cols=28 Identities=21% Similarity=0.109 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhccCCCCCCccCCCccccCC
Q 021524 95 SALAALQYREAAANFSSVGGFQRGGKRMHHP 125 (311)
Q Consensus 95 ~AlaaL~~Ren~~n~~p~~~~~~g~K~~hh~ 125 (311)
...++|...+..++.+|+ .|-+.|+|||
T Consensus 569 ~~~~~~~~l~~~~~~~~~---~~~~~~~~~~ 596 (597)
T 3oja_B 569 LKRQKVKQLEAKKNRNPD---TRRVSHHHHH 596 (597)
T ss_dssp HHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHHhcCCCc---cccccccccC
Confidence 334455667777777777 6666555544
No 3
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=67.08 E-value=13 Score=27.27 Aligned_cols=36 Identities=39% Similarity=0.241 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 41 NKKIMAILAERDAAIRERNIALTEKREALETRDQALEERDK 81 (311)
Q Consensus 41 n~ki~aaiaERD~AI~ERd~AIaERD~AiaERD~AiaERD~ 81 (311)
|.|+-+|++ -.|-|.|-.|+|-|-.|+|-|-.|||.
T Consensus 19 nakleniva-----rlendnanlekdianlekdianlerdv 54 (56)
T 3he4_A 19 NAKLENIVA-----RLENDNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHH-----HHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 444555554 234444444555555555544444443
No 4
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=61.39 E-value=23 Score=29.11 Aligned_cols=8 Identities=13% Similarity=0.310 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 021524 44 IMAILAER 51 (311)
Q Consensus 44 i~aaiaER 51 (311)
+..+|.++
T Consensus 118 v~~a~~~~ 125 (188)
T 3bk6_A 118 MQKAMARQ 125 (188)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44455544
No 5
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=51.63 E-value=37 Score=27.48 Aligned_cols=6 Identities=0% Similarity=0.041 Sum_probs=2.6
Q ss_pred HHhhcc
Q 021524 103 REAAAN 108 (311)
Q Consensus 103 Ren~~n 108 (311)
+++.++
T Consensus 121 ~~~~~~ 126 (142)
T 3gp4_A 121 AQEELK 126 (142)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 444444
No 6
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=51.05 E-value=46 Score=25.94 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 54 AIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAALQY 102 (311)
Q Consensus 54 AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~AlaaL~~ 102 (311)
-.+-|+..+.+=...+..-..++.||.....+...+.++|+..++++..
T Consensus 18 RA~arel~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e 66 (86)
T 3nr7_A 18 RAQARESTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYRE 66 (86)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666667777777777777777777777777777766654
No 7
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=47.19 E-value=52 Score=25.65 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 43 KIMAILAERDAAIRERNIALTEKREAL 69 (311)
Q Consensus 43 ki~aaiaERD~AI~ERd~AIaERD~Ai 69 (311)
|+..+|.||..+..+..++.+||.+.+
T Consensus 35 Kl~~VveERree~~~~~~~~~er~~Kl 61 (86)
T 3nr7_A 35 KLEVVVNERREEESAAAAEVEERTRKL 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433333
No 8
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=46.05 E-value=52 Score=24.07 Aligned_cols=35 Identities=37% Similarity=0.211 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524 54 AIRERNIALTEKREALETRDQALEERDKALAERDD 88 (311)
Q Consensus 54 AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~ 88 (311)
|-.|---|-.|-|-|-.|+|-|-.|+|-|-.|||-
T Consensus 20 aklenivarlendnanlekdianlekdianlerdv 54 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 33344445555555555555555555555555553
No 9
>2pqx_A Ribonuclease I; hydrolase; HET: MES; 1.42A {Escherichia coli} PDB: 2ea1_A* 2pqy_A* 2z70_A*
Probab=39.46 E-value=21 Score=31.19 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=15.1
Q ss_pred HHHHHHhhccCCCCCcccchh-HhhhhCC
Q 021524 277 KLLSRLAAEGHDLSVPLDLKN-FWAKHGT 304 (311)
Q Consensus 277 kll~rla~eg~~~s~p~dlk~-~wakhgt 304 (311)
.|++.|...=-|+.....|=. -|.||||
T Consensus 107 ~l~~~L~~~WP~~~~~~~fw~hEW~KHGT 135 (245)
T 2pqx_A 107 ETAAKLSEVMPGAGGRSCLERYEYAKHGA 135 (245)
T ss_dssp HHHHHHHHHCTTSSTTTCHHHHHHHHHTG
T ss_pred HHHHHHHHhCCCCCCcchHHHHHhhhCCe
Confidence 355555443333333334544 4899998
No 10
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Probab=33.66 E-value=8.7 Score=34.02 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=32.2
Q ss_pred ccccccchHHHHHHHHHHhhcc-CCCCCcccchhHhhhh
Q 021524 265 VGGRKMSGSVFTKLLSRLAAEG-HDLSVPLDLKNFWAKH 302 (311)
Q Consensus 265 ~~grkms~~af~kll~rla~eg-~~~s~p~dlk~~wakh 302 (311)
+.|+.-...++.+||..|.+.| +-|...-+|-+||.++
T Consensus 262 ~~g~~~~~~aL~~~l~~l~~~g~v~~~T~~eia~~~~~~ 300 (308)
T 3cl6_A 262 LIGRPARLAALQRFIEYAKSHEQVWFTRRVDIARHWHAT 300 (308)
T ss_dssp HHTSHHHHHHHHHHHHHHHTSSSEEECCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEecHHHHHHHHHHh
Confidence 4455556789999999999987 8999999999999864
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.83 E-value=3.8e+02 Score=25.04 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=0.0
Q ss_pred cCCCccccCCCCC
Q 021524 116 QRGGKRMHHPTYQ 128 (311)
Q Consensus 116 ~~g~K~~hh~~~~ 128 (311)
.-..++..||++|
T Consensus 584 ~~~~~~~~~~~~~ 596 (597)
T 3oja_B 584 NPDTRRVSHHHHH 596 (597)
T ss_dssp -------------
T ss_pred CCccccccccccC
Confidence 4555566666655
No 12
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=25.80 E-value=4.3e+02 Score=26.58 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 021524 54 AIRERNIALTEKRE 67 (311)
Q Consensus 54 AI~ERd~AIaERD~ 67 (311)
+|...++||.+|.+
T Consensus 45 ~i~aeNeaikkrNa 58 (497)
T 3iox_A 45 ALTAENTAIKKRNA 58 (497)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 13
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=24.61 E-value=3.4e+02 Score=27.33 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 021524 60 IALTEKREALETRD 73 (311)
Q Consensus 60 ~AIaERD~AiaERD 73 (311)
++|.+..+||.+|-
T Consensus 44 ~~i~aeNeaikkrN 57 (497)
T 3iox_A 44 AALTAENTAIKKRN 57 (497)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 14
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=24.58 E-value=87 Score=23.69 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021524 61 ALTEKREALETRDQALEERD 80 (311)
Q Consensus 61 AIaERD~AiaERD~AiaERD 80 (311)
+|..||.-|.+....+.++|
T Consensus 19 ~i~~Kde~I~eLE~~L~~kd 38 (67)
T 1zxa_A 19 ILMLKEERIKELEKRLSEKE 38 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHHHH
Confidence 33334443433333333333
No 15
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_T
Probab=24.23 E-value=1.9e+02 Score=26.12 Aligned_cols=11 Identities=27% Similarity=0.051 Sum_probs=0.0
Q ss_pred CCCCccCCCcc
Q 021524 111 SVGGFQRGGKR 121 (311)
Q Consensus 111 p~~~~~~g~K~ 121 (311)
.||.++.|.|.
T Consensus 193 ~~~~~~~~~~~ 203 (209)
T 3iz5_T 193 SGCSSSCGTKE 203 (209)
T ss_dssp -----------
T ss_pred CCccccccccc
Confidence 45555555443
No 16
>3sb1_A Hydrogenase expression protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HUPH, unkno function; HET: PGE; 1.67A {Thiobacillus denitrificans}
Probab=21.17 E-value=20 Score=30.92 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=0.0
Q ss_pred ccCCCCCCC--CCc-c-cCCCCCCCCCCCCCccCCCC
Q 021524 122 MHHPTYQSG--DVP-E-ALNSGDMHATDAKPITIIPS 154 (311)
Q Consensus 122 ~hh~~~~~~--~~~-e-~~~~~e~~~~~a~p~s~~~~ 154 (311)
||||++|++ +++ | -|.-.+.-..|.+|+.+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iP~~~~~~ 37 (160)
T 3sb1_A 1 MHHHHHHSSGVDLGTENLYFQSNAMTREIIPILPEAP 37 (160)
T ss_dssp -------------------------------------
T ss_pred CCcccccccccccCccccceecccccccCCCcccCCC
Confidence 456666654 443 3 56544444788999965553
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.90 E-value=4.1e+02 Score=23.03 Aligned_cols=16 Identities=0% Similarity=-0.012 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 021524 85 ERDDALMARDSALAAL 100 (311)
Q Consensus 85 ERD~AIaERD~AlaaL 100 (311)
++|.++++-+..++.|
T Consensus 147 ~~~~~~~e~~~e~~~l 162 (256)
T 3na7_A 147 LVENEVKNIKETQQII 162 (256)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444433333
Done!