Query 021525
Match_columns 311
No_of_seqs 192 out of 272
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:41:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4282 Transcription factor G 100.0 7.8E-31 1.7E-35 252.3 23.7 250 31-300 54-317 (345)
2 PF13837 Myb_DNA-bind_4: Myb/S 99.8 1.1E-20 2.3E-25 147.8 7.1 85 32-125 2-90 (90)
3 smart00595 MADF subfamily of S 98.8 5.2E-09 1.1E-13 81.9 5.4 75 42-126 2-85 (89)
4 PF12776 Myb_DNA-bind_3: Myb/S 98.7 9.5E-08 2.1E-12 75.5 9.2 72 33-108 1-75 (96)
5 PF10545 MADF_DNA_bdg: Alcohol 98.6 1.9E-08 4.2E-13 76.7 3.4 76 42-125 1-85 (85)
6 PF13873 Myb_DNA-bind_5: Myb/S 98.3 2.7E-06 5.9E-11 65.3 7.9 69 30-102 1-76 (78)
7 PF00249 Myb_DNA-binding: Myb- 97.9 3.9E-05 8.4E-10 54.1 5.6 47 32-95 2-48 (48)
8 smart00717 SANT SANT SWI3, AD 97.2 0.00056 1.2E-08 46.1 4.5 47 32-96 2-48 (49)
9 PF13921 Myb_DNA-bind_6: Myb-l 97.2 0.0005 1.1E-08 50.1 4.1 43 34-95 1-44 (60)
10 cd00167 SANT 'SWI3, ADA2, N-Co 96.9 0.0014 3.1E-08 43.5 3.6 45 33-95 1-45 (45)
11 PLN03212 Transcription repress 95.7 0.027 5.8E-07 53.3 6.7 50 27-93 21-70 (249)
12 PLN03091 hypothetical protein; 95.5 0.034 7.3E-07 56.5 6.6 53 29-100 65-117 (459)
13 PLN03212 Transcription repress 95.4 0.035 7.6E-07 52.5 6.2 51 29-98 76-126 (249)
14 PF04504 DUF573: Protein of un 95.2 0.11 2.4E-06 42.4 7.9 66 33-104 6-71 (98)
15 PLN03091 hypothetical protein; 93.3 0.13 2.8E-06 52.3 5.2 49 28-93 11-59 (459)
16 KOG1279 Chromatin remodeling f 91.5 0.16 3.4E-06 52.7 3.2 47 29-94 251-297 (506)
17 COG5259 RSC8 RSC chromatin rem 90.8 0.32 7E-06 49.9 4.7 46 30-94 278-323 (531)
18 PRK13923 putative spore coat p 87.8 1.9 4.1E-05 38.9 6.8 61 28-101 2-63 (170)
19 TIGR02894 DNA_bind_RsfA transc 85.9 2.1 4.6E-05 38.3 6.0 60 29-101 2-62 (161)
20 PF03353 Lin-8: Ras-mediated v 84.2 1.1 2.4E-05 43.2 3.7 62 33-100 19-83 (313)
21 KOG0049 Transcription factor, 82.9 2 4.3E-05 46.0 5.2 52 28-96 250-301 (939)
22 KOG0048 Transcription factor, 79.4 5.6 0.00012 37.0 6.5 55 29-102 60-115 (238)
23 KOG4348 Adaptor protein CMS/SE 77.8 7.1 0.00015 40.3 7.0 56 238-301 568-623 (627)
24 KOG0457 Histone acetyltransfer 75.1 8.2 0.00018 39.5 6.6 46 27-90 68-113 (438)
25 KOG0051 RNA polymerase I termi 74.5 4.1 8.9E-05 43.3 4.5 66 30-104 435-516 (607)
26 TIGR01557 myb_SHAQKYF myb-like 68.7 17 0.00037 26.9 5.5 46 31-92 3-51 (57)
27 KOG4468 Polycomb-group transcr 67.3 20 0.00042 38.5 7.4 86 3-103 57-145 (782)
28 PF15444 TMEM247: Transmembran 58.7 14 0.00029 34.1 4.0 11 266-276 103-113 (218)
29 KOG0048 Transcription factor, 52.7 16 0.00036 33.9 3.7 46 31-93 9-54 (238)
30 PF07227 DUF1423: Protein of u 48.5 76 0.0017 32.8 7.9 52 240-294 368-424 (446)
31 PF12037 DUF3523: Domain of un 46.0 97 0.0021 30.1 7.8 50 246-295 133-183 (276)
32 KOG0049 Transcription factor, 43.1 35 0.00077 37.1 4.7 47 30-94 359-405 (939)
33 PF04568 IATP: Mitochondrial A 39.3 1.3E+02 0.0028 24.9 6.6 40 247-286 46-91 (100)
34 PF08549 SWI-SNF_Ssr4: Fungal 37.5 1.2E+02 0.0026 33.0 7.6 44 257-300 368-412 (669)
35 PF13404 HTH_AsnC-type: AsnC-t 34.0 72 0.0016 21.9 3.7 24 62-95 19-42 (42)
36 PF10168 Nup88: Nuclear pore c 33.1 2.5E+02 0.0054 30.7 9.3 57 242-299 589-659 (717)
37 PF04231 Endonuclease_1: Endon 31.6 1.1E+02 0.0025 28.4 5.7 51 242-292 157-207 (218)
38 cd07662 BAR_SNX6 The Bin/Amphi 30.5 2.6E+02 0.0055 26.4 7.7 59 242-300 76-147 (218)
39 PF06576 DUF1133: Protein of u 30.3 88 0.0019 28.5 4.5 28 63-95 133-160 (176)
40 PF13767 DUF4168: Domain of un 28.7 2.7E+02 0.0058 21.3 6.8 26 246-271 4-29 (78)
41 cd07646 I-BAR_IMD_IRSp53 Inver 28.2 5E+02 0.011 24.8 9.3 62 240-301 64-143 (232)
42 cd07605 I-BAR_IMD Inverse (I)- 28.1 4.1E+02 0.0089 24.8 8.7 64 240-303 62-143 (223)
43 smart00502 BBC B-Box C-termina 27.7 3E+02 0.0065 21.5 7.2 38 249-286 46-83 (127)
44 KOG0050 mRNA splicing protein 26.8 56 0.0012 34.5 3.0 23 61-92 28-50 (617)
45 PRK08476 F0F1 ATP synthase sub 26.5 4E+02 0.0087 22.7 7.9 46 254-299 86-131 (141)
46 cd07663 BAR_SNX5 The Bin/Amphi 26.2 3.3E+02 0.0072 25.5 7.7 57 243-299 77-146 (218)
47 cd07623 BAR_SNX1_2 The Bin/Amp 26.2 5.1E+02 0.011 23.7 9.0 46 243-288 67-122 (224)
48 PF05278 PEARLI-4: Arabidopsis 25.4 3.3E+02 0.0071 26.5 7.7 20 255-274 188-207 (269)
49 PTZ00266 NIMA-related protein 24.8 3.7E+02 0.0079 30.9 9.0 11 30-40 223-233 (1021)
50 PF00435 Spectrin: Spectrin re 24.1 3E+02 0.0064 20.2 6.6 65 35-105 32-96 (105)
51 KOG0971 Microtubule-associated 24.1 2E+02 0.0044 32.7 6.6 48 254-301 236-291 (1243)
52 PHA00369 H minor spike protein 23.3 88 0.0019 30.0 3.4 40 257-300 141-180 (325)
53 KOG4403 Cell surface glycoprot 22.8 2.5E+02 0.0055 29.3 6.7 23 242-264 252-274 (575)
54 PF04687 Microvir_H: Microviru 22.6 82 0.0018 30.2 3.0 40 257-300 125-164 (310)
55 KOG1772 Vacuolar H+-ATPase V1 22.3 4.8E+02 0.01 22.1 9.2 63 238-300 5-86 (108)
56 KOG3612 PHD Zn-finger protein 22.3 3.9E+02 0.0084 28.6 8.0 57 243-299 457-525 (588)
57 PRK13460 F0F1 ATP synthase sub 21.6 5.5E+02 0.012 22.4 8.0 39 260-298 101-139 (173)
58 KOG3838 Mannose lectin ERGIC-5 21.5 2E+02 0.0043 29.8 5.6 34 264-297 283-333 (497)
59 PF11433 DUF3198: Protein of u 21.2 1.4E+02 0.003 21.8 3.3 24 241-264 23-47 (51)
60 PRK09173 F0F1 ATP synthase sub 21.2 4.7E+02 0.01 22.4 7.3 43 256-298 83-125 (159)
61 PF01388 ARID: ARID/BRIGHT DNA 20.9 95 0.0021 24.0 2.7 31 60-101 57-87 (92)
62 PF08994 T4_Gp59_C: T4 gene Gp 20.3 1.2E+02 0.0027 25.3 3.3 58 37-98 45-102 (103)
63 KOG0163 Myosin class VI heavy 20.1 3.9E+02 0.0085 30.1 7.7 23 252-274 906-928 (1259)
No 1
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=99.98 E-value=7.8e-31 Score=252.28 Aligned_cols=250 Identities=28% Similarity=0.424 Sum_probs=155.4
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 021525 31 EDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKARVVSSNG 110 (311)
Q Consensus 31 ~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~eK~~~~~S~G 110 (311)
..+|+.+||++||++|+++|..|+++++++++|++||..+... |+.||+.||++||++|+|+||++|.+...+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~-----g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~-- 126 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAEL-----GYPRSPKQCKAKIENLKKKYKKEKAKKEGS-- 126 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHHhcccCCC--
Confidence 4899999999999999999999999999999999999988774 689999999999999999999999987643
Q ss_pred CCCCCcccchhHHHhhC-CCCCCCCCCCCCCC-CCCCCCCcCcccccccccCCCccccccccCCCCCCCCCCCCCc-ccc
Q 021525 111 TLTSSWPFFERMDTLIG-NNVKPSSNFSPKLS-QSQSPPVAVPLAYRKSVSVNNSNINNINNNNNSNSLALAPIPT-ATA 187 (311)
Q Consensus 111 ~~~s~W~fFd~MD~Llg-~~~~~~~~~~~~~~-~s~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~ 187 (311)
...++|+||+.||.|+. ....... ..+. ...+.++.++..+......++.... ...+......+|. -..
T Consensus 127 ~~~s~~~ff~~le~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~ 198 (345)
T KOG4282|consen 127 GEGSSWKFFSELEALLITFKARPRS---DEVGPGNASAPLTLSVSSEPQFSSNPTELQ-----FDGSSLEDSSQPSGLNE 198 (345)
T ss_pred CCCccchHHHHHHHHHhccCCCCCC---CCCCcccccCccccCCCCCCCCCCCccccc-----cCCCcCCCCCcccccCc
Confidence 46799999999999997 2221111 1111 1122233333332100111110000 0000111111110 000
Q ss_pred ccCcccCCCCCCCCccchhHHHHHHHhhhccchHHHH------HHHHh-hhccccccchhHHHHHHHHHHHHHHHHHHH-
Q 021525 188 VALPQKRGYNSEGFYRNYSAVAAAAAAAESEDEEAEE------EAEEE-ENDNVNEENSGVKRLAKAIERFGEVYERVE- 259 (311)
Q Consensus 188 ~~~~~~r~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~ela~ai~~f~e~yer~E- 259 (311)
.... .....+... +...........+.+.+.. ..... ........+..++++++++.+|+++|+++|
T Consensus 199 ~~~~----~~~~~~~~~-~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 273 (345)
T KOG4282|consen 199 DNSN----SSSPEPVAG-SLSNDTSSSSSPDDSADSEGGKSSSRKRRVRKDGSKEGIEELMREVARSQERLDEVLERVEE 273 (345)
T ss_pred cccc----cCCCCCCCc-chhhccccccchhcccccccCCCCCCCccccccccchhHHHHhhhhhhhHHHHHHHHHHHhc
Confidence 0000 000011100 0000000000000000000 00000 111122335678999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHhhc
Q 021525 260 AEKLRQMVELEKQRMQFA---SDLEMQRLRMFTEMQVQLERNKR 300 (311)
Q Consensus 260 ~~K~~~~~e~Ek~Rme~~---kelE~~r~q~~~~~Q~ei~k~~~ 300 (311)
..++++|.++|+.||+++ +|+|++++++++++|++|+.|+.
T Consensus 274 ~~~~~~~~~~e~~r~~~~~r~ke~e~~~~~~~~~~~~~i~~i~~ 317 (345)
T KOG4282|consen 274 KKEQERMSEEEKWRMEEIERNKELELARQERIQETQLEIRSIKA 317 (345)
T ss_pred cchHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 99999999999999999997765
No 2
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=99.83 E-value=1.1e-20 Score=147.82 Aligned_cols=85 Identities=36% Similarity=0.760 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHhhhHHh--hhc-CCcChH-hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcc
Q 021525 32 DCWSEEATSTLVDAWGRRYLE--LNR-GNLRQK-DWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKARVVS 107 (311)
Q Consensus 32 ~~WSe~eT~~LLdaw~ek~~~--l~r-g~lR~k-~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~eK~~~~~ 107 (311)
..||++||.+||++|++.+.+ +.. ++.++. +|++||+.|+++ |+.+|+.||++||++|+++|++++.+...
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~-----G~~rt~~qc~~Kw~~L~~~Yk~~k~~~~~ 76 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEH-----GYNRTPEQCRNKWKNLKKKYKKIKDRNKK 76 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHH-----C----HHHHHHHHHHHHHHHHCSSSSSS-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 489999999999999995444 443 677776 999999999986 57899999999999999999999998754
Q ss_pred CCCCCCCCcccchhHHHh
Q 021525 108 SNGTLTSSWPFFERMDTL 125 (311)
Q Consensus 108 S~G~~~s~W~fFd~MD~L 125 (311)
+ .++|+||+.||.|
T Consensus 77 ~----~~~w~~f~~md~i 90 (90)
T PF13837_consen 77 S----GSSWPYFDEMDEI 90 (90)
T ss_dssp -------S---TT-----
T ss_pred C----CCcCcCHHHHhcC
Confidence 3 2699999999986
No 3
>smart00595 MADF subfamily of SANT domain.
Probab=98.83 E-value=5.2e-09 Score=81.89 Aligned_cols=75 Identities=23% Similarity=0.585 Sum_probs=56.9
Q ss_pred HHHHHhhh---H----HhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhccCC--CCC
Q 021525 42 LVDAWGRR---Y----LELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKARVVSSN--GTL 112 (311)
Q Consensus 42 LLdaw~ek---~----~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~eK~~~~~S~--G~~ 112 (311)
||++|+.. | ..+.....+...|.+||..|+. |..+|+.||++|+..|+.+..+...+. |..
T Consensus 2 LI~~v~~~p~Lwd~~~~~y~~~~~r~~aW~~Ia~~l~~----------~~~~~~~kw~~LR~~y~~e~~r~~~~~~~~~~ 71 (89)
T smart00595 2 LIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGL----------SVEECKKRWKNLRDRYRRELKRLQNGKSGGGK 71 (89)
T ss_pred hHHHHHhCccccCCCChhhcChHHHHHHHHHHHHHHCc----------CHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 78888775 2 2233444566799999999942 999999999999999999976654322 223
Q ss_pred CCCcccchhHHHhh
Q 021525 113 TSSWPFFERMDTLI 126 (311)
Q Consensus 113 ~s~W~fFd~MD~Ll 126 (311)
.+.|.||+.|..|.
T Consensus 72 ~~~w~~~~~m~FL~ 85 (89)
T smart00595 72 KSKWEYFDRLSFLR 85 (89)
T ss_pred CCCchhhHhhhhHH
Confidence 69999999999885
No 4
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=98.71 E-value=9.5e-08 Score=75.48 Aligned_cols=72 Identities=31% Similarity=0.454 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHhhhHHhhhc---CCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhccC
Q 021525 33 CWSEEATSTLVDAWGRRYLELNR---GNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKARVVSS 108 (311)
Q Consensus 33 ~WSe~eT~~LLdaw~ek~~~l~r---g~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~eK~~~~~S 108 (311)
.||++.+..||+++-+....-++ +.++...|..|+.+|++.+| ..+|..||+||++.||+.|+..+.-...|
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~----~~~t~~qlknk~~~lk~~y~~~~~l~~~s 75 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTG----LNYTKKQLKNKWKTLKKDYRIWKELRNHS 75 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhC----CcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 59999999999999887655443 56677799999999999864 67899999999999999999998876655
No 5
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=98.65 E-value=1.9e-08 Score=76.72 Aligned_cols=76 Identities=18% Similarity=0.510 Sum_probs=56.9
Q ss_pred HHHHHhhhH-------HhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhc--cCCCCC
Q 021525 42 LVDAWGRRY-------LELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKARVV--SSNGTL 112 (311)
Q Consensus 42 LLdaw~ek~-------~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~eK~~~~--~S~G~~ 112 (311)
||++|+..- ..+....++...|++||..|.. ..+..+|+.+|.+|+..|+.++.+.. ..+...
T Consensus 1 LI~~v~~~p~Lwd~~~~~y~~~~~r~~aw~~Ia~~l~~--------~~~~~~~~~~w~~Lr~~y~~~~~~~~~~~~~~~~ 72 (85)
T PF10545_consen 1 LIELVKKHPCLWDPSHPDYKNRQLREEAWQEIARELGK--------EFSVDDCKKRWKNLRDRYRRELKKIKSSGGSEEY 72 (85)
T ss_pred CHHHHhhCHHhhCCCCcccCCHHHHHHHHHHHHHHHcc--------chhHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 566666642 2233344566789999999954 24688999999999999999988776 122346
Q ss_pred CCCcccchhHHHh
Q 021525 113 TSSWPFFERMDTL 125 (311)
Q Consensus 113 ~s~W~fFd~MD~L 125 (311)
.++|.||+.|..|
T Consensus 73 ~~~~~~~~~l~FL 85 (85)
T PF10545_consen 73 VPTWSYYEELSFL 85 (85)
T ss_pred CCccHHHHHCcCC
Confidence 8999999999765
No 6
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=98.33 E-value=2.7e-06 Score=65.32 Aligned_cols=69 Identities=28% Similarity=0.350 Sum_probs=54.6
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhc-CC------cChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNR-GN------LRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEK 102 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~r-g~------lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~eK 102 (311)
|...||.+|+.+||+........+.. .+ .+...|++|+..||+..+ ..+|..||+.+|++||..=|+.-
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~----~~Rs~~~lkkkW~nlk~~~Kk~~ 76 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGP----GKRSWKQLKKKWKNLKSKAKKKL 76 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHHHHHh
Confidence 45689999999999998886555432 11 244589999999999632 38999999999999999877653
No 7
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.86 E-value=3.9e-05 Score=54.08 Aligned_cols=47 Identities=26% Similarity=0.524 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 021525 32 DCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIK 95 (311)
Q Consensus 32 ~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LK 95 (311)
..||.+|...|+++....-. ..|..||..|. ..||..||++++.+|+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~---------~~W~~Ia~~~~--------~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGK---------DNWKKIAKRMP--------GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTT---------THHHHHHHHHS--------SSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCC---------cHHHHHHHHcC--------CCCCHHHHHHHHHhhC
Confidence 47999999999999874322 17999999994 2589999999998874
No 8
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.24 E-value=0.00056 Score=46.14 Aligned_cols=47 Identities=26% Similarity=0.538 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHH
Q 021525 32 DCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKK 96 (311)
Q Consensus 32 ~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKK 96 (311)
..||.+|...|+.+....-. ..|..||..|. .+|+.||++++.+|.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~---------~~w~~Ia~~~~---------~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK---------NNWEKIAKELP---------GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc---------CCHHHHHHHcC---------CCCHHHHHHHHHHHcC
Confidence 47999999999998774321 47999999884 4799999999998764
No 9
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.19 E-value=0.0005 Score=50.10 Aligned_cols=43 Identities=33% Similarity=0.776 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH-HH
Q 021525 34 WSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDT-IK 95 (311)
Q Consensus 34 WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~-LK 95 (311)
||.+|...|+.++... |+ .|..||..|. .||+.||++|+.+ |+
T Consensus 1 WT~eEd~~L~~~~~~~------g~----~W~~Ia~~l~---------~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKY------GN----DWKKIAEHLG---------NRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHH------TS-----HHHHHHHST---------TS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHH------Cc----CHHHHHHHHC---------cCCHHHHHHHHHHHCc
Confidence 9999999999999864 22 6999998873 3799999999998 64
No 10
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=96.85 E-value=0.0014 Score=43.50 Aligned_cols=45 Identities=27% Similarity=0.534 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 021525 33 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIK 95 (311)
Q Consensus 33 ~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LK 95 (311)
.||.+|...|+.+....-. ..|..||..|. .||..||++++.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---------~~w~~Ia~~~~---------~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---------NNWEKIAKELP---------GRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---------CCHHHHHhHcC---------CCCHHHHHHHHHHhC
Confidence 4999999999998875421 46999999883 279999999998763
No 11
>PLN03212 Transcription repressor MYB5; Provisional
Probab=95.74 E-value=0.027 Score=53.31 Aligned_cols=50 Identities=18% Similarity=0.418 Sum_probs=36.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 021525 27 LPVREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDT 93 (311)
Q Consensus 27 ~~~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~ 93 (311)
..-++..||.+|-..|+++.... | ...|.+||..|. ..||+.|||.||.+
T Consensus 21 ~glKRg~WT~EEDe~L~~lV~ky------G---~~nW~~IAk~~g--------~gRT~KQCReRW~N 70 (249)
T PLN03212 21 MGMKRGPWTVEEDEILVSFIKKE------G---EGRWRSLPKRAG--------LLRCGKSCRLRWMN 70 (249)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHh------C---cccHHHHHHhhh--------cCCCcchHHHHHHH
Confidence 34556689999999998764422 1 135999998763 35899999999974
No 12
>PLN03091 hypothetical protein; Provisional
Probab=95.45 E-value=0.034 Score=56.47 Aligned_cols=53 Identities=23% Similarity=0.396 Sum_probs=42.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKI 100 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~ 100 (311)
-+...||.+|-..||+.+.. + | ..|..||..|. .||+.||||+|..+-++|.+
T Consensus 65 IkKgpWT~EED~lLLeL~k~----~--G----nKWskIAk~LP---------GRTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 65 LKRGTFSQQEENLIIELHAV----L--G----NRWSQIAAQLP---------GRTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred ccCCCCCHHHHHHHHHHHHH----h--C----cchHHHHHhcC---------CCCHHHHHHHHHHHHHHHHH
Confidence 35668999999999998863 1 3 36999998883 47999999999998777655
No 13
>PLN03212 Transcription repressor MYB5; Provisional
Probab=95.41 E-value=0.035 Score=52.51 Aligned_cols=51 Identities=24% Similarity=0.332 Sum_probs=40.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKY 98 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrY 98 (311)
-+...||.+|-..||+.+.. + | ..|..||..|. .||+.||||+|.++-+++
T Consensus 76 I~kgpWT~EED~lLlel~~~----~--G----nKWs~IAk~Lp---------GRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 76 VKRGGITSDEEDLILRLHRL----L--G----NRWSLIAGRIP---------GRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred cccCCCChHHHHHHHHHHHh----c--c----ccHHHHHhhcC---------CCCHHHHHHHHHHHHhHH
Confidence 45678999999999988542 1 2 36999999883 479999999999877664
No 14
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=95.24 E-value=0.11 Score=42.39 Aligned_cols=66 Identities=23% Similarity=0.254 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 021525 33 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKAR 104 (311)
Q Consensus 33 ~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~eK~~ 104 (311)
.||++.-.+||+..-+..-.. |..-..+|..+.+.|.... ....|..|-..||..||++|.....+
T Consensus 6 ~WS~eDEi~iL~gl~~~~~~~--G~~p~~d~~~f~~~vk~~l----~~~~s~~Ql~~KirrLK~Ky~~~~~k 71 (98)
T PF04504_consen 6 LWSEEDEIVILQGLIDFRAKT--GKSPQPDMNAFYDFVKGSL----SFDVSKNQLYDKIRRLKKKYRNAVKK 71 (98)
T ss_pred CCCchHHHHHHHHHHHHHHhc--CCCCCccHHHHHHHHHHHc----cCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 699999999999988664443 4333347888888887754 35689999999999999999987766
No 15
>PLN03091 hypothetical protein; Provisional
Probab=93.31 E-value=0.13 Score=52.33 Aligned_cols=49 Identities=22% Similarity=0.441 Sum_probs=37.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 021525 28 PVREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDT 93 (311)
Q Consensus 28 ~~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~ 93 (311)
+.++..||.+|-..|+++.... |. ..|..||..+. ..||+.|||.||.+
T Consensus 11 klrKg~WTpEEDe~L~~~V~ky------G~---~nWs~IAk~~g--------~gRT~KQCRERW~N 59 (459)
T PLN03091 11 KLRKGLWSPEEDEKLLRHITKY------GH---GCWSSVPKQAG--------LQRCGKSCRLRWIN 59 (459)
T ss_pred CCcCCCCCHHHHHHHHHHHHHh------Cc---CCHHHHhhhhc--------cCcCcchHhHHHHh
Confidence 3566789999999999876522 21 37999997652 45899999999874
No 16
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=91.47 E-value=0.16 Score=52.70 Aligned_cols=47 Identities=28% Similarity=0.487 Sum_probs=37.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTI 94 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~L 94 (311)
.-+..||++||++||++-.- ...+|..||..|. .||..||--||-.|
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~----------y~ddW~kVa~hVg---------~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEM----------YGDDWNKVADHVG---------TKSQEQCILKFLRL 297 (506)
T ss_pred cCCCCccHHHHHHHHHHHHH----------hcccHHHHHhccC---------CCCHHHHHHHHHhc
Confidence 45668999999999997541 2358999998884 47999999998765
No 17
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=90.82 E-value=0.32 Score=49.85 Aligned_cols=46 Identities=26% Similarity=0.466 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTI 94 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~L 94 (311)
+...||.+|+++||+.-... ..+|..||..|. .||..||--||=.|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~y----------gDdW~kVA~HVg---------tKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMY----------GDDWDKVARHVG---------TKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHh----------hhhHHHHHHHhC---------CCCHHHHHHHHHcC
Confidence 56699999999999864311 258999999994 47999999998776
No 18
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=87.81 E-value=1.9 Score=38.93 Aligned_cols=61 Identities=28% Similarity=0.578 Sum_probs=46.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHH-HHHHHHHHHH
Q 021525 28 PVREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRI-DTIKKKYKIE 101 (311)
Q Consensus 28 ~~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKi-d~LKKrYK~e 101 (311)
..|.++||+++-.+|-+++-+. ...|...-..+++|++.|+ +|..+|.-+| ..++++|...
T Consensus 2 k~rqdawt~e~d~llae~vl~~---i~eg~tql~afe~~g~~L~----------rt~aac~fRwNs~vrk~Yee~ 63 (170)
T PRK13923 2 KTRQDAWTQERDGLLAEVVLRH---IREGGTQLKAFEEVGDALK----------RTAAACGFRWNSVVRKQYQEQ 63 (170)
T ss_pred cchhhhhhhHHHHHHHHHHHHH---HhccchHHHHHHHHHHHHh----------hhHHHHHhHHHHHHHHHHHHH
Confidence 3578999999999996665432 2346655568999999886 4999999999 5678888864
No 19
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=85.87 E-value=2.1 Score=38.28 Aligned_cols=60 Identities=27% Similarity=0.536 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH-HHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDT-IKKKYKIE 101 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~-LKKrYK~e 101 (311)
.|-|.||+++-++|-++-- +++ +.|..--..++||++.|+ ||..=|.-||.+ ++|.|..+
T Consensus 2 ~RQDAWT~eeDlLLAEtVL-rhI--ReG~TQL~AFeEvg~~L~----------RTsAACGFRWNs~VRkqY~~~ 62 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVL-RHI--REGSTQLSAFEEVGRALN----------RTAAACGFRWNAYVRKQYEEA 62 (161)
T ss_pred ccccccccHHHHHHHHHHH-HHH--hcchHHHHHHHHHHHHHc----------ccHHHhcchHHHHHHHHHHHH
Confidence 5789999999999887643 222 345543458999999885 699999999986 68889986
No 20
>PF03353 Lin-8: Ras-mediated vulval-induction antagonist; InterPro: IPR005020 This is a family of Caenorhabditis elegans proteins of unknown function.
Probab=84.23 E-value=1.1 Score=43.18 Aligned_cols=62 Identities=10% Similarity=0.166 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHhh---hHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 021525 33 CWSEEATSTLVDAWGR---RYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKI 100 (311)
Q Consensus 33 ~WSe~eT~~LLdaw~e---k~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~ 100 (311)
.|...-..++|.+-++ -|- ..+......|++||..|-.|.| ...+..+++.=|.+-|...|.
T Consensus 19 ~~~~~~kk~il~~i~~~p~lw~--~~~~~~~~~~~~v~v~vy~Rtg----~~~~~~~i~~~~~~aK~~Lr~ 83 (313)
T PF03353_consen 19 KKDVELKKVILSEIEKFPELWK--KKSRVPNEEWEEVAVEVYKRTG----KLVSVKHIRSIFKNAKDSLRR 83 (313)
T ss_pred hhhHHHHHHHHHHHhcChHhhh--ccCCccHHHHHHHHHHHHHHHh----hhcCHHHHHHHHHHHHHHHHH
Confidence 4544444555555444 344 4455566799999999999965 568999999999888887775
No 21
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=82.89 E-value=2 Score=46.04 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=40.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHH
Q 021525 28 PVREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKK 96 (311)
Q Consensus 28 ~~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKK 96 (311)
..+++.||.+|...|+.+=.. .+...|+.||..| |..|+.-||-.||++=-+
T Consensus 250 ~~nk~~WS~EE~E~L~AiA~A---------~~~~~W~~IA~~L--------gt~RS~yQC~~kF~t~~~ 301 (939)
T KOG0049|consen 250 KWNKEHWSNEEVEKLKALAEA---------PKFVSWPMIALNL--------GTNRSSYQCMEKFKTEVS 301 (939)
T ss_pred ccchhccChHHHHHHHHHHhc---------cccccHHHHHHHh--------CCCcchHHHHHHHHHHHH
Confidence 358899999999999876432 1344799999888 467999999999987443
No 22
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=79.36 E-value=5.6 Score=36.97 Aligned_cols=55 Identities=27% Similarity=0.413 Sum_probs=42.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH-HHHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDT-IKKKYKIEK 102 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~-LKKrYK~eK 102 (311)
-++..||++|..+||.+.... || -|..||..| +.||+...||=|.+ |||+++...
T Consensus 60 ikrg~fT~eEe~~Ii~lH~~~------GN----rWs~IA~~L---------PGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 60 LKRGNFSDEEEDLIIKLHALL------GN----RWSLIAGRL---------PGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred ccCCCCCHHHHHHHHHHHHHH------Cc----HHHHHHhhC---------CCcCHHHHHHHHHHHHHHHHHHcC
Confidence 356699999999999987632 33 399999888 45899999888865 577777654
No 23
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=77.79 E-value=7.1 Score=40.30 Aligned_cols=56 Identities=30% Similarity=0.381 Sum_probs=42.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 021525 238 NSGVKRLAKAIERFGEVYERVEAEKLRQMVELEKQRMQFASDLEMQRLRMFTEMQVQLERNKRT 301 (311)
Q Consensus 238 ~~~~~ela~ai~~f~e~yer~E~~K~~~~~e~Ek~Rme~~kelE~~r~q~~~~~Q~ei~k~~~~ 301 (311)
...+.||-..|+-|--+ ||..|-+|-+|||+.|- |||-..+ |-.+.||||.+|+..
T Consensus 568 k~s~delr~qi~el~~i---ve~lk~~~~kel~kl~~----dleeek~-mr~~lemei~~lkka 623 (627)
T KOG4348|consen 568 KNSLDELRAQIIELLCI---VEALKKDHGKELEKLRK----DLEEEKT-MRSNLEMEIEKLKKA 623 (627)
T ss_pred hhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHH-HHhhhHhhHHHHHHH
Confidence 35677887777655444 78899999999999998 5765543 567889999999864
No 24
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=75.06 E-value=8.2 Score=39.48 Aligned_cols=46 Identities=30% Similarity=0.708 Sum_probs=35.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 021525 27 LPVREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNR 90 (311)
Q Consensus 27 ~~~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnK 90 (311)
.+--...||..|-.+||++-. .++-|| |++||+.|- .||..+|+.=
T Consensus 68 ~~i~~~~WtadEEilLLea~~----t~G~GN-----W~dIA~hIG---------tKtkeeck~h 113 (438)
T KOG0457|consen 68 FPILDPSWTADEEILLLEAAE----TYGFGN-----WQDIADHIG---------TKTKEECKEH 113 (438)
T ss_pred CCCCCCCCChHHHHHHHHHHH----HhCCCc-----HHHHHHHHc---------ccchHHHHHH
Confidence 344556899999999999854 455564 999999994 3799999753
No 25
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=74.48 E-value=4.1 Score=43.26 Aligned_cols=66 Identities=17% Similarity=0.403 Sum_probs=47.9
Q ss_pred CCCCCCHHHHHHHHHHHhhhHH---hhh--------c----CCcChH-hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYL---ELN--------R----GNLRQK-DWQDVADAVNALHAHSKKTHRTDVQCKNRIDT 93 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~---~l~--------r----g~lR~k-~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~ 93 (311)
+...||-+|...||++..+... ++. + +.|... .|-.|++.+- .|+..|||.|+-.
T Consensus 435 ~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~---------TR~~~qCr~Kw~k 505 (607)
T KOG0051|consen 435 NRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLG---------TRSRIQCRYKWYK 505 (607)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhc---------CCCcchHHHHHHH
Confidence 5679999999999999986544 331 1 223334 4999999332 4799999999999
Q ss_pred HHHHHHHHHhh
Q 021525 94 IKKKYKIEKAR 104 (311)
Q Consensus 94 LKKrYK~eK~~ 104 (311)
|-.+|=.-+.+
T Consensus 506 l~~~~s~n~~~ 516 (607)
T KOG0051|consen 506 LTTSPSFNKRQ 516 (607)
T ss_pred HHhhHHhhccc
Confidence 98887654444
No 26
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=68.70 E-value=17 Score=26.88 Aligned_cols=46 Identities=17% Similarity=0.382 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhH---HHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 021525 31 EDCWSEEATSTLVDAWGRRYLELNRGNLRQKDW---QDVADAVNALHAHSKKTHRTDVQCKNRID 92 (311)
Q Consensus 31 ~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W---~eVA~~v~~r~g~~~~~~rT~~QCrnKid 92 (311)
+..||+++-..+|+++.. +++| +| ..|++.|.. ...|..||+.-..
T Consensus 3 r~~WT~eeh~~Fl~ai~~----~G~g-----~~a~pk~I~~~~~~-------~~lT~~qV~SH~Q 51 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQK----LGGP-----DWATPKRILELMVV-------DGLTRDQVASHLQ 51 (57)
T ss_pred CCCCCHHHHHHHHHHHHH----hCCC-----cccchHHHHHHcCC-------CCCCHHHHHHHHH
Confidence 458999999999999873 3333 58 888877742 2349999987654
No 27
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=67.28 E-value=20 Score=38.46 Aligned_cols=86 Identities=19% Similarity=0.259 Sum_probs=57.4
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCCC---CCCCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCC
Q 021525 3 DLTESLTPSTTTTTPTSTTPYSRP---LPVREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKK 79 (311)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~p~~~~---~~~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~ 79 (311)
|-|..-+++|+..-|+-..--.+- .-+.+..||+.|...+.|+..+. .++++.|.+.+..| +
T Consensus 57 dqTnp~~l~pss~ept~~~~k~~qk~Lkt~~ktaWt~~E~~~Ffdal~~~----------GKdFe~VinaklKR-----r 121 (782)
T KOG4468|consen 57 DQTNPNLLSPSSIEPTQFPAKKPQKQLKTWAKTAWTHQEEESFFDALRQV----------GKDFEKVINAKLKR-----R 121 (782)
T ss_pred cccCCCcCCccccCCcccccccchhhcccccccccchhhHHHHHHHHHHh----------cccHHHHHHHHHHh-----c
Confidence 445566666666555433222211 12446689999999998887632 25788888877777 3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Q 021525 80 THRTDVQCKNRIDTIKKKYKIEKA 103 (311)
Q Consensus 80 ~~rT~~QCrnKid~LKKrYK~eK~ 103 (311)
-..|..|-|+|...=-+-||....
T Consensus 122 na~s~~~~Ktkdqvr~~yY~~~~~ 145 (782)
T KOG4468|consen 122 NATSRVQSKTKDQVRHYYYRLVRR 145 (782)
T ss_pred ccccchhhhhhHHHHHHHHHHHHH
Confidence 456888888888888888887654
No 28
>PF15444 TMEM247: Transmembrane protein 247
Probab=58.71 E-value=14 Score=34.07 Aligned_cols=11 Identities=64% Similarity=0.915 Sum_probs=9.0
Q ss_pred HHHHHHHHhhh
Q 021525 266 MVELEKQRMQF 276 (311)
Q Consensus 266 ~~e~Ek~Rme~ 276 (311)
..||||.||||
T Consensus 103 emELEKvRMEF 113 (218)
T PF15444_consen 103 EMELEKVRMEF 113 (218)
T ss_pred hhHHHHHHHHH
Confidence 46889999988
No 29
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=52.72 E-value=16 Score=33.88 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 021525 31 EDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDT 93 (311)
Q Consensus 31 ~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~ 93 (311)
...||.+|-..|++.-.. ++-+ -|.-||+.+ +..|++++||-||-|
T Consensus 9 kGpWt~EED~~L~~~V~~----~G~~-----~W~~i~k~~--------gl~R~GKSCRlRW~N 54 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKS----FGKH-----NGTALPKLA--------GLRRCGKSCRLRWTN 54 (238)
T ss_pred CCCCChHHHHHHHHHHHH----hCCC-----Ccchhhhhc--------CCCccchHHHHHhhc
Confidence 468999999999874331 1111 698898766 236899999999875
No 30
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=48.46 E-value=76 Score=32.81 Aligned_cols=52 Identities=25% Similarity=0.295 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhhHHHHHHHHHHHHHHH
Q 021525 240 GVKRLAKAIERFGEVYERVEAEKLRQMVE-----LEKQRMQFASDLEMQRLRMFTEMQVQ 294 (311)
Q Consensus 240 ~~~ela~ai~~f~e~yer~E~~K~~~~~e-----~Ek~Rme~~kelE~~r~q~~~~~Q~e 294 (311)
=|-.-|+-.|+=+|.|-||-.+|-+++.| +=|.|+. |.|-+|.+.|++.|+.
T Consensus 368 MFQ~kAdEARrEAE~LqrI~~aK~~k~EEEYas~~~kl~l~---eaee~r~~~~eelk~~ 424 (446)
T PF07227_consen 368 MFQLKADEARREAEGLQRIALAKSEKIEEEYASRYLKLRLN---EAEEERKKKFEELKVL 424 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHH
Confidence 35667888999999999999999998876 3455554 8999999999888765
No 31
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=46.01 E-value=97 Score=30.12 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHH
Q 021525 246 KAIERFGEVYERVEAEKLRQMVELEKQRMQFA-SDLEMQRLRMFTEMQVQL 295 (311)
Q Consensus 246 ~ai~~f~e~yer~E~~K~~~~~e~Ek~Rme~~-kelE~~r~q~~~~~Q~ei 295 (311)
+.++.--|.+.|.|+.+++.-.+|..+|++-. .++||+|-.++.++..|.
T Consensus 133 e~lk~QEes~~rqE~~Rr~Te~~i~~~r~~t~~~eaeL~~e~~~~k~~AEa 183 (276)
T PF12037_consen 133 ELLKMQEESVIRQEQMRRATEEQILAQRRQTEEEEAELRRETERAKAEAEA 183 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 55667778999999999999999988888664 478898888888877774
No 32
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=43.13 E-value=35 Score=37.05 Aligned_cols=47 Identities=34% Similarity=0.663 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTI 94 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~L 94 (311)
...-|+++|-..|+.|-.+. ..++|..|-..| ++|++.|||.+.-+.
T Consensus 359 khg~wt~~ED~~L~~AV~~Y---------g~kdw~k~R~~v---------PnRSdsQcR~RY~nv 405 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRY---------GAKDWAKVRQAV---------PNRSDSQCRERYTNV 405 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHh---------CccchhhHHHhc---------CCccHHHHHHHHHHH
Confidence 45589999999999886532 235899888777 568999999987653
No 33
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=39.32 E-value=1.3e+02 Score=24.90 Aligned_cols=40 Identities=20% Similarity=0.372 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhhhHHHHHHH
Q 021525 247 AIERFGEVYERVEAEK------LRQMVELEKQRMQFASDLEMQRLR 286 (311)
Q Consensus 247 ai~~f~e~yer~E~~K------~~~~~e~Ek~Rme~~kelE~~r~q 286 (311)
+|+.-|.+|-+.|.|. +++...|+++|.+..+|.+.++-+
T Consensus 46 sir~ag~~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~ 91 (100)
T PF04568_consen 46 SIRAAGGAFGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKE 91 (100)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhCCccchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555553 444555666666555555556555
No 34
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=37.55 E-value=1.2e+02 Score=32.97 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHhhc
Q 021525 257 RVEAEKLRQMVELEKQRMQFASDLE-MQRLRMFTEMQVQLERNKR 300 (311)
Q Consensus 257 r~E~~K~~~~~e~Ek~Rme~~kelE-~~r~q~~~~~Q~ei~k~~~ 300 (311)
||...=-++..|||||+.+-+|.|+ ++|+-+|.++-.+|--+-.
T Consensus 368 RV~~~ia~~~AEIekmK~~Hak~m~k~k~~s~lk~AE~~LR~a~~ 412 (669)
T PF08549_consen 368 RVAKKIADMNAEIEKMKARHAKRMAKFKRNSLLKDAEKELRDAVE 412 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC
Confidence 3333333445566666666666555 5666667666666654444
No 35
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=33.96 E-value=72 Score=21.94 Aligned_cols=24 Identities=13% Similarity=0.451 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 021525 62 DWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIK 95 (311)
Q Consensus 62 ~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LK 95 (311)
-|.+||+.|. .|...|..+|..|+
T Consensus 19 s~~~la~~lg----------lS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 19 SYAELAEELG----------LSESTVRRRIRRLE 42 (42)
T ss_dssp -HHHHHHHHT----------S-HHHHHHHHHHHH
T ss_pred cHHHHHHHHC----------cCHHHHHHHHHHhC
Confidence 5889998883 58999999999885
No 36
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.11 E-value=2.5e+02 Score=30.74 Aligned_cols=57 Identities=21% Similarity=0.413 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021525 242 KRLAKAIERFGEVYERVEAEKLRQMVELEKQR--------------MQFASDLEMQRLRMFTEMQVQLERNK 299 (311)
Q Consensus 242 ~ela~ai~~f~e~yer~E~~K~~~~~e~Ek~R--------------me~~kelE~~r~q~~~~~Q~ei~k~~ 299 (311)
..|.+.-.+++|.|++++..-..-+..++++. .+|.+||+.=+.+ +...|..|++++
T Consensus 589 ~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~-l~~l~~si~~lk 659 (717)
T PF10168_consen 589 KSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQ-LQDLKASIEQLK 659 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 33444446777888877766555555566554 2455566654444 345555555444
No 37
>PF04231 Endonuclease_1: Endonuclease I; InterPro: IPR007346 Bacterial periplasmic or secreted (3.1.21.1 from EC) Escherichia coli endonuclease I (EndoI) is a sequence independent endonuclease located in the periplasm. It is inhibited by different RNA species. It is thought to normally generate double strand breaks in DNA, except in the presence of high salt concentrations and RNA, when it generates single strand breaks in DNA. Its biological role is unknown []. Other family members are known to be extracellular []. This family also includes a non-specific, Mg2+-activated ribonuclease precursor (Q03091 from SWISSPROT) [].; GO: 0004518 nuclease activity; PDB: 1OUO_A 1OUP_B 2IVK_C 2VND_A 2PU3_A 2G7F_A 2G7E_A.
Probab=31.63 E-value=1.1e+02 Score=28.41 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 021525 242 KRLAKAIERFGEVYERVEAEKLRQMVELEKQRMQFASDLEMQRLRMFTEMQ 292 (311)
Q Consensus 242 ~ela~ai~~f~e~yer~E~~K~~~~~e~Ek~Rme~~kelE~~r~q~~~~~Q 292 (311)
.+||+++-=|...|+.+.-.+.+..+=++--+.+=.-+.|++|.+.|...|
T Consensus 157 GdIARa~fYm~~rY~~~~~~~~~~~~l~~W~~~DPVd~~E~~RN~~I~~~Q 207 (218)
T PF04231_consen 157 GDIARAYFYMATRYEGLPLSDQQRQLLLAWHKEDPVDEWERERNNRIYKIQ 207 (218)
T ss_dssp HHHHHHHHHHHHHC-T----HHHHHHHHHHHHHS---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCchhHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Confidence 689999999999998888777777555666666556689999999988866
No 38
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=30.47 E-value=2.6e+02 Score=26.36 Aligned_cols=59 Identities=19% Similarity=0.307 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH----HHH-hhhhhhHHHHHHHHHHH---HHHHHHHhhc
Q 021525 242 KRLAKAIERFGEVYERVEAEKLRQMVE-----LE----KQR-MQFASDLEMQRLRMFTE---MQVQLERNKR 300 (311)
Q Consensus 242 ~ela~ai~~f~e~yer~E~~K~~~~~e-----~E----k~R-me~~kelE~~r~q~~~~---~Q~ei~k~~~ 300 (311)
..|+.++.+|+|+||+|..---.|.-. .| =+| ++++|||=.+|+..|.+ +|..|.|.+.
T Consensus 76 t~L~~~l~~laev~eki~~l~~~~A~~e~l~L~e~L~~Y~r~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~ 147 (218)
T cd07662 76 TDICKFFLKVSELFDKTRKIEARVAADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARA 147 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999998766665321 12 233 36699999999988765 5566666554
No 39
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=30.28 E-value=88 Score=28.51 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 021525 63 WQDVADAVNALHAHSKKTHRTDVQCKNRIDTIK 95 (311)
Q Consensus 63 W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LK 95 (311)
=..+|+.++.. ++.-+-.||++||+.=-
T Consensus 133 k~~MA~eL~~~-----hPew~~~TC~~RI~~wL 160 (176)
T PF06576_consen 133 KRKMAEELNEK-----HPEWCLRTCRRRIDWWL 160 (176)
T ss_pred HHHHHHHHhcc-----CCcccHHHHHHHHHHHH
Confidence 34699999985 57899999999998643
No 40
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=28.66 E-value=2.7e+02 Score=21.28 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021525 246 KAIERFGEVYERVEAEKLRQMVELEK 271 (311)
Q Consensus 246 ~ai~~f~e~yer~E~~K~~~~~e~Ek 271 (311)
+-|..|+++|..||.-+.+...+|..
T Consensus 4 ~el~~fA~A~~~ie~ir~~~~~~l~~ 29 (78)
T PF13767_consen 4 AELDQFARAVLEIEPIRQEYQQELQA 29 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999988887777665
No 41
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=28.19 E-value=5e+02 Score=24.75 Aligned_cols=62 Identities=16% Similarity=0.279 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH------HHHhhh-hh--hHHHH-HHHHHHHHHHHHHHhhcc
Q 021525 240 GVKRLAKAIERFGEVYERVEAEKLRQMV--------ELE------KQRMQF-AS--DLEMQ-RLRMFTEMQVQLERNKRT 301 (311)
Q Consensus 240 ~~~ela~ai~~f~e~yer~E~~K~~~~~--------e~E------k~Rme~-~k--elE~~-r~q~~~~~Q~ei~k~~~~ 301 (311)
|..||-.+|-..+++|-.|+....++.+ +|| -..|.+ .| ++|.+ |.+-+.++|.+|-|+++-
T Consensus 64 gSkeLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E~D~k~i~a~~Kky~~e~k~k~~sleK~qseLKKlRrK 143 (232)
T cd07646 64 GSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLTAALKKYQTEHRSKGESLEKCQAELKKLRKK 143 (232)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3589999999999999998877655432 333 333322 11 33333 345899999999999854
No 42
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=28.06 E-value=4.1e+02 Score=24.84 Aligned_cols=64 Identities=17% Similarity=0.330 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH----Hh---hhhh--hHHHH-HHHHHHHHHHHHHHhhcc
Q 021525 240 GVKRLAKAIERFGEVYERVEAEKLRQM--------VELEKQ----RM---QFAS--DLEMQ-RLRMFTEMQVQLERNKRT 301 (311)
Q Consensus 240 ~~~ela~ai~~f~e~yer~E~~K~~~~--------~e~Ek~----Rm---e~~k--elE~~-r~q~~~~~Q~ei~k~~~~ 301 (311)
|.++|..++-++.++|-.+|....+.. ..||+. -- ++.| ..|.+ +.+-|.+.+.++-|+..-
T Consensus 62 ~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KK 141 (223)
T cd07605 62 GSQELGEALKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKK 141 (223)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998877663 223321 11 1111 12222 335577888888887754
Q ss_pred cC
Q 021525 302 KR 303 (311)
Q Consensus 302 ~~ 303 (311)
.+
T Consensus 142 s~ 143 (223)
T cd07605 142 SQ 143 (223)
T ss_pred Hc
Confidence 33
No 43
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=27.69 E-value=3e+02 Score=21.55 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 021525 249 ERFGEVYERVEAEKLRQMVELEKQRMQFASDLEMQRLR 286 (311)
Q Consensus 249 ~~f~e~yer~E~~K~~~~~e~Ek~Rme~~kelE~~r~q 286 (311)
..|...+.-++..|...+.+|++.+.+-.+.|+.+.-+
T Consensus 46 ~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~ 83 (127)
T smart00502 46 AAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLES 83 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778889999999999999888665555544433
No 44
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=26.83 E-value=56 Score=34.54 Aligned_cols=23 Identities=35% Similarity=0.742 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 021525 61 KDWQDVADAVNALHAHSKKTHRTDVQCKNRID 92 (311)
Q Consensus 61 k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid 92 (311)
+.|.+||..++. +|..||+++|.
T Consensus 28 nqws~i~sll~~---------kt~rqC~~rw~ 50 (617)
T KOG0050|consen 28 NQWSRIASLLNR---------KTARQCKARWE 50 (617)
T ss_pred HHHHHHHHHHhh---------cchhHHHHHHH
No 45
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=26.52 E-value=4e+02 Score=22.68 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021525 254 VYERVEAEKLRQMVELEKQRMQFASDLEMQRLRMFTEMQVQLERNK 299 (311)
Q Consensus 254 ~yer~E~~K~~~~~e~Ek~Rme~~kelE~~r~q~~~~~Q~ei~k~~ 299 (311)
+=...+..+.+.-.++|+++-++..+|+.++-++..+.+.|+.-+.
T Consensus 86 A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~ 131 (141)
T PRK08476 86 AKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFK 131 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3334444455555566666666666888888888888888876554
No 46
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=26.17 E-value=3.3e+02 Score=25.53 Aligned_cols=57 Identities=19% Similarity=0.312 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----H----HHH-hhhhhhHHHHHHHHHHH---HHHHHHHhh
Q 021525 243 RLAKAIERFGEVYERVEAEKLRQMVEL-----E----KQR-MQFASDLEMQRLRMFTE---MQVQLERNK 299 (311)
Q Consensus 243 ela~ai~~f~e~yer~E~~K~~~~~e~-----E----k~R-me~~kelE~~r~q~~~~---~Q~ei~k~~ 299 (311)
.|..++..||++||+|+.--.+|.-.- | =+| ++++|+|=.+|+..|.+ +|..|.|.+
T Consensus 77 ~L~kals~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r~~~A~K~ll~rR~ral~~~e~A~~~L~KaR 146 (218)
T cd07663 77 VIKKYLLKVAELFEKLRKVEDRVASDQDLKLTELLRYYMLNIEAAKDLLYRRARALADYENSNKALDKAR 146 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999998666655431 1 223 36688999999988764 556666654
No 47
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=26.17 E-value=5.1e+02 Score=23.74 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH----HH-hhhhhhHHHHHHHHH
Q 021525 243 RLAKAIERFGEVYERVEAEKLRQMVE-----LEK----QR-MQFASDLEMQRLRMF 288 (311)
Q Consensus 243 ela~ai~~f~e~yer~E~~K~~~~~e-----~Ek----~R-me~~kelE~~r~q~~ 288 (311)
.|+++|..||++|++|...=.+|... .|- .| +...|+.=-+|...+
T Consensus 67 ~Ls~al~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~ 122 (224)
T cd07623 67 SLSRALSQLAEVEEKIEQLHGEQADTDFYILAELLKDYIGLIGAIKDVFHERVKVW 122 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999987654443322 222 22 244667667787777
No 48
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=25.40 E-value=3.3e+02 Score=26.47 Aligned_cols=20 Identities=30% Similarity=0.212 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 021525 255 YERVEAEKLRQMVELEKQRM 274 (311)
Q Consensus 255 yer~E~~K~~~~~e~Ek~Rm 274 (311)
|+-.|..|....+.|+..+.
T Consensus 188 ~~~~e~eke~~~r~l~~~~~ 207 (269)
T PF05278_consen 188 HETREEEKEEKDRKLELKKE 207 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 49
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=24.79 E-value=3.7e+02 Score=30.87 Aligned_cols=11 Identities=18% Similarity=0.501 Sum_probs=6.0
Q ss_pred CCCCCCHHHHH
Q 021525 30 REDCWSEEATS 40 (311)
Q Consensus 30 r~~~WSe~eT~ 40 (311)
+.|.||-+-++
T Consensus 223 KSDVWSLG~IL 233 (1021)
T PTZ00266 223 KSDMWALGCII 233 (1021)
T ss_pred hhHHHHHHHHH
Confidence 34566665444
No 50
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=24.10 E-value=3e+02 Score=20.24 Aligned_cols=65 Identities=8% Similarity=0.088 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 021525 35 SEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKARV 105 (311)
Q Consensus 35 Se~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~eK~~~ 105 (311)
+..++..+|..+......+....-+-..=.+.+..|... .+-....++.+++.|..+|.......
T Consensus 32 ~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~------~~~~~~~i~~~~~~l~~~w~~l~~~~ 96 (105)
T PF00435_consen 32 DLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDS------GPEDSDEIQEKLEELNQRWEALCELV 96 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------THTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888877666654333334455777888543 24577999999999999999887654
No 51
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.09 E-value=2e+02 Score=32.71 Aligned_cols=48 Identities=23% Similarity=0.489 Sum_probs=30.8
Q ss_pred HHHHHHHHHHH------HHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHhhcc
Q 021525 254 VYERVEAEKLR------QMVELEKQRMQF--ASDLEMQRLRMFTEMQVQLERNKRT 301 (311)
Q Consensus 254 ~yer~E~~K~~------~~~e~Ek~Rme~--~kelE~~r~q~~~~~Q~ei~k~~~~ 301 (311)
.-|++|..|.+ ..+|||||+.+| .-|.-.|=|+-..+-|.||-+.++.
T Consensus 236 LtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e 291 (1243)
T KOG0971|consen 236 LTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKE 291 (1243)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544 468999999887 3355556666666777777665544
No 52
>PHA00369 H minor spike protein
Probab=23.31 E-value=88 Score=30.04 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhc
Q 021525 257 RVEAEKLRQMVELEKQRMQFASDLEMQRLRMFTEMQVQLERNKR 300 (311)
Q Consensus 257 r~E~~K~~~~~e~Ek~Rme~~kelE~~r~q~~~~~Q~ei~k~~~ 300 (311)
-||.+-+++-+||-||-++-+||+ -.| -+++|.||+-|.-
T Consensus 141 Gm~~ag~~~QKEl~kMQLDnQKeI--AkM--Q~~~~~~IAGiQS 180 (325)
T PHA00369 141 GMEDAGFNNQKELTKMQLDNQKEI--AKM--QNDTQKQIAGIQS 180 (325)
T ss_pred cchhhhhhhHHHHHHHhhccHHHH--HHH--hhhhhhhhhhhhh
Confidence 489999999999999888777764 344 4689999988754
No 53
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=22.82 E-value=2.5e+02 Score=29.34 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021525 242 KRLAKAIERFGEVYERVEAEKLR 264 (311)
Q Consensus 242 ~ela~ai~~f~e~yer~E~~K~~ 264 (311)
..|-.|=.-|-++-+|+|.++++
T Consensus 252 e~Lq~aEqsl~dlQk~Lekar~e 274 (575)
T KOG4403|consen 252 EGLQRAEQSLEDLQKRLEKAREE 274 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555555555
No 54
>PF04687 Microvir_H: Microvirus H protein (pilot protein); InterPro: IPR006777 Bacteriophage PhiX174 is one of the simplest viruses, having a single-stranded, closed circular DNA of 5386 nucleotide bases and four capsid proteins, J, F, G and H. A single molecule of H protein is found on each of the 12 spikes on the microvirus shell of the bacteriophage. H is involved in the ejection of the phage DNA, and at least one copy is injected into the hosts periplasmic space along with the ssDNA viral genome []. Part of H is thought to lie outside the shell, where it recognises lipopolysaccharide from virus-sensitive bacterial strains []. Part of H may lie within the capsid, since mutations in H can influence the DNA ejection mechanism by affecting the DNA-protein interactions []. H may span the capsid through the hydrophilic channels formed by G proteins [].; GO: 0016032 viral reproduction, 0019028 viral capsid
Probab=22.60 E-value=82 Score=30.17 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhc
Q 021525 257 RVEAEKLRQMVELEKQRMQFASDLEMQRLRMFTEMQVQLERNKR 300 (311)
Q Consensus 257 r~E~~K~~~~~e~Ek~Rme~~kelE~~r~q~~~~~Q~ei~k~~~ 300 (311)
-||.+-+++-+||-||-++-+||+ -.| -+++|.||+-|.-
T Consensus 125 gm~~ag~~~qkel~kmqldnqkei--akm--q~~~~~~iagiqs 164 (310)
T PF04687_consen 125 GMEDAGFQNQKELTKMQLDNQKEI--AKM--QNETQKQIAGIQS 164 (310)
T ss_pred cccccchhhHHHHHHHhhhhHHHH--HHH--Hhhhhhhhhhhhh
Confidence 378999999999988888777764 334 4689999988754
No 55
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=22.33 E-value=4.8e+02 Score=22.05 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH-----------HHHHHHHHHHh
Q 021525 238 NSGVKRLAKAIERFGEVYE--------RVEAEKLRQMVELEKQRMQFASDLEMQRLRM-----------FTEMQVQLERN 298 (311)
Q Consensus 238 ~~~~~ela~ai~~f~e~ye--------r~E~~K~~~~~e~Ek~Rme~~kelE~~r~q~-----------~~~~Q~ei~k~ 298 (311)
+.|+-.|-+|=.+-+++.+ |+=+||.+-++|+|..|++--+|.-.+.-+. =.+||.+|+.|
T Consensus 5 ~qGIqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~~ki~~l 84 (108)
T KOG1772|consen 5 SQGIQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLEQETDDKIAGL 84 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Q ss_pred hc
Q 021525 299 KR 300 (311)
Q Consensus 299 ~~ 300 (311)
+.
T Consensus 85 k~ 86 (108)
T KOG1772|consen 85 KT 86 (108)
T ss_pred HH
No 56
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=22.27 E-value=3.9e+02 Score=28.65 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHhh
Q 021525 243 RLAKAIERFGEVYERVEAE--------KLRQMVELEKQRMQF----ASDLEMQRLRMFTEMQVQLERNK 299 (311)
Q Consensus 243 ela~ai~~f~e~yer~E~~--------K~~~~~e~Ek~Rme~----~kelE~~r~q~~~~~Q~ei~k~~ 299 (311)
-|.++|++|..-||+.-.- .+..-.+|..||..+ ++.+-..+.++..+.|.+|+..|
T Consensus 457 ~l~a~t~kL~~E~e~~q~~~~~~l~~~~~~~~~em~~~r~tlE~k~~~n~~e~~kkl~~~~qr~l~etK 525 (588)
T KOG3612|consen 457 SLVAATEKLRQEFEELQQTSRRELPVPLRNFELEMAEMRKTLEQKHAENIKEEIKKLAEEHQRALAETK 525 (588)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777666654433 333346778888743 11222334445556666666544
No 57
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=21.59 E-value=5.5e+02 Score=22.43 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Q 021525 260 AEKLRQMVELEKQRMQFASDLEMQRLRMFTEMQVQLERN 298 (311)
Q Consensus 260 ~~K~~~~~e~Ek~Rme~~kelE~~r~q~~~~~Q~ei~k~ 298 (311)
...-+--.+.|++.-++..++|.+|-+.+.+.+.||..+
T Consensus 101 ~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ei~~l 139 (173)
T PRK13460 101 KLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEM 139 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455666666666677777777777777777654
No 58
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.49 E-value=2e+02 Score=29.76 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhhh----------hHH-------HHHHHHHHHHHHHHHH
Q 021525 264 RQMVELEKQRMQFAS----------DLE-------MQRLRMFTEMQVQLER 297 (311)
Q Consensus 264 ~~~~e~Ek~Rme~~k----------elE-------~~r~q~~~~~Q~ei~k 297 (311)
.++.|||+++-+|.| |++ -++...+.+.|-+|++
T Consensus 283 ~~q~elek~k~efkk~hpd~~~e~ee~~~~yEs~~~Relrqi~egQn~i~~ 333 (497)
T KOG3838|consen 283 WAQLELEKRKDEFKKSHPDAQGEGEELFDLYESLGHRELRQILEGQNAIHK 333 (497)
T ss_pred HHHHHHhhhHhhhccCCchhhcchhhhhhhhhccchHHHHHHHhhhhHHHH
Confidence 368899999998855 222 3455566677766654
No 59
>PF11433 DUF3198: Protein of unknown function (DUF3198); InterPro: IPR024504 This domain is found at the C-terminal of a family of archaeal proteins annotated as membrane proteins.; PDB: 1X9B_A.
Probab=21.23 E-value=1.4e+02 Score=21.83 Aligned_cols=24 Identities=29% Similarity=0.609 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHH
Q 021525 241 VKRLAKAIERFGEVYE-RVEAEKLR 264 (311)
Q Consensus 241 ~~ela~ai~~f~e~ye-r~E~~K~~ 264 (311)
+.||-+--.+||+.|+ |+|++|.+
T Consensus 23 L~ELE~is~rlg~~Y~~~LeeaK~k 47 (51)
T PF11433_consen 23 LTELERISKRLGKSYQIRLEEAKEK 47 (51)
T ss_dssp HHHHHHHHHHH-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHchHHHHHHHHHHHh
Confidence 6777777789999994 88888864
No 60
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=21.22 E-value=4.7e+02 Score=22.39 Aligned_cols=43 Identities=2% Similarity=-0.046 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Q 021525 256 ERVEAEKLRQMVELEKQRMQFASDLEMQRLRMFTEMQVQLERN 298 (311)
Q Consensus 256 er~E~~K~~~~~e~Ek~Rme~~kelE~~r~q~~~~~Q~ei~k~ 298 (311)
.-++.++.+--.+++++......+++.+|.+.+.+.+.++..+
T Consensus 83 ~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~~~~~l 125 (159)
T PRK09173 83 ALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRSSAVDL 125 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666666666678888888888888777654
No 61
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=20.85 E-value=95 Score=24.03 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=19.2
Q ss_pred hHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 021525 60 QKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIE 101 (311)
Q Consensus 60 ~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~e 101 (311)
.+.|.+||..|.- . ...+.. ...||+-|.+.
T Consensus 57 ~~~W~~va~~lg~----~--~~~~~~-----~~~L~~~Y~~~ 87 (92)
T PF01388_consen 57 NKKWREVARKLGF----P--PSSTSA-----AQQLRQHYEKY 87 (92)
T ss_dssp HTTHHHHHHHTTS-------TTSCHH-----HHHHHHHHHHH
T ss_pred cchHHHHHHHhCC----C--CCCCcH-----HHHHHHHHHHH
Confidence 3479999998832 1 112222 67788888763
No 62
>PF08994 T4_Gp59_C: T4 gene Gp59 loader of gp41 DNA helicase C-term; InterPro: IPR015086 The Bacteriophage T4 gene 59 helicase assembly protein is required for recombination-dependent DNA replication, which is the predominant mode of DNA replication in the late stage of T4 infection. T4 gene 59 helicase assembly protein accelerates the loading of the T4 gene 41 helicase during DNA synthesis by the T4 replication system in vitro. T4 gene 59 helicase assembly protein binds to both T4 gene 41 helicase and T4 gene 32 single-stranded DNA binding protein, and to single and double-stranded DNA. The C-terminal domain of the T4 gene 59 helicase assembly protein consists of seven alpha-helices with short intervening loops and turns; the surface of the domain contains large regions of exposed hydrophobic residues and clusters of acidic and basic residues. The hydrophobic region on the 'bottom' surface of the domain near the C-terminal helix binds the leading strand DNA, whilst the hydrophobic region on the, top, surface of the domain lies between the two arms of the fork DNA, allowing for T4 gene 41 helicase binding and assembly into a hexameric complex around the lagging strand []. ; PDB: 1C1K_A.
Probab=20.29 E-value=1.2e+02 Score=25.30 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHH
Q 021525 37 EATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKY 98 (311)
Q Consensus 37 ~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrY 98 (311)
=||++++|-.=.--..+.. .+...+|+++...|.+- .+=......+||+-|...-+.+
T Consensus 45 ~ET~vilds~Lg~v~~~Dk-~~~D~iW~~~s~kl~kY---r~fl~Id~~kyk~~~~eti~~~ 102 (103)
T PF08994_consen 45 LETFVILDSFLGFVDKFDK-VLTDPIWKNYSTKLKKY---RPFLKIDCEKYKKLFIETIKSC 102 (103)
T ss_dssp HHHHHHHHHHH-HHHHHHH-H---HHHHHHHHHHHHH---HHHEEE-HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhHHhhhh-hccchhHHHHHHHHHHh---cchhhcCHHHHHHHHHHHHHhc
Confidence 3789999877665555554 45556899999999873 2112356677777776655544
No 63
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=20.12 E-value=3.9e+02 Score=30.13 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 021525 252 GEVYERVEAEKLRQMVELEKQRM 274 (311)
Q Consensus 252 ~e~yer~E~~K~~~~~e~Ek~Rm 274 (311)
-+...|+-+.++||..|+|++|.
T Consensus 906 e~~~~~l~sk~~q~~~e~er~rk 928 (1259)
T KOG0163|consen 906 EKLVKRLDSKEQQQIEELERLRK 928 (1259)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHH
Confidence 34445666777778888887773
Done!