Query 021525
Match_columns 311
No_of_seqs 192 out of 272
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 05:23:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.8 1.9E-21 6.4E-26 152.3 8.2 85 29-121 2-86 (86)
2 3sjm_A Telomeric repeat-bindin 97.9 2E-05 6.9E-10 58.4 6.4 52 29-96 9-60 (64)
3 1w0t_A Telomeric repeat bindin 97.7 8E-05 2.7E-09 52.6 5.9 50 31-96 2-51 (53)
4 1x41_A Transcriptional adaptor 97.6 0.00014 4.6E-09 52.8 6.5 48 29-94 6-53 (60)
5 2cu7_A KIAA1915 protein; nucle 97.6 0.00024 8.4E-09 53.2 8.1 50 29-97 7-56 (72)
6 2ltp_A Nuclear receptor corepr 96.8 9.1E-06 3.1E-10 63.9 0.0 52 29-99 14-65 (89)
7 2d9a_A B-MYB, MYB-related prot 97.5 0.00017 5.8E-09 52.1 6.0 48 29-94 6-53 (60)
8 1guu_A C-MYB, MYB proto-oncoge 97.5 0.00013 4.4E-09 51.1 5.1 47 30-94 2-48 (52)
9 1ity_A TRF1; helix-turn-helix, 97.5 0.0003 1E-08 52.3 6.8 52 29-96 8-59 (69)
10 2elk_A SPCC24B10.08C protein; 97.5 0.00043 1.5E-08 49.9 7.4 47 31-94 9-55 (58)
11 2yus_A SWI/SNF-related matrix- 97.4 0.00016 5.4E-09 55.8 4.9 47 29-94 16-62 (79)
12 2yum_A ZZZ3 protein, zinc fing 97.4 0.00044 1.5E-08 52.0 7.2 50 30-92 7-56 (75)
13 2roh_A RTBP1, telomere binding 97.4 0.0012 4.1E-08 55.0 10.2 56 29-98 29-84 (122)
14 1gvd_A MYB proto-oncogene prot 97.4 0.00023 7.7E-09 49.9 4.7 47 30-94 2-48 (52)
15 2llk_A Cyclin-D-binding MYB-li 97.3 0.00035 1.2E-08 53.3 5.2 48 29-96 21-68 (73)
16 2cqr_A RSGI RUH-043, DNAJ homo 97.3 0.00086 2.9E-08 51.0 7.3 53 29-96 16-68 (73)
17 2k9n_A MYB24; R2R3 domain, DNA 97.2 0.00087 3E-08 53.6 7.7 49 30-97 52-100 (107)
18 3osg_A MYB21; transcription-DN 97.2 0.00041 1.4E-08 57.2 5.1 50 30-98 61-110 (126)
19 2dim_A Cell division cycle 5-l 97.1 0.001 3.6E-08 49.3 6.2 47 29-93 7-53 (70)
20 2cjj_A Radialis; plant develop 97.1 0.0018 6.1E-08 51.5 7.7 57 31-102 8-64 (93)
21 2din_A Cell division cycle 5-l 97.0 0.0022 7.7E-08 47.0 6.9 49 30-98 8-56 (66)
22 2juh_A Telomere binding protei 96.9 0.005 1.7E-07 51.2 9.3 56 28-97 14-69 (121)
23 1gv2_A C-MYB, MYB proto-oncoge 96.9 0.00076 2.6E-08 53.4 4.2 49 30-97 55-103 (105)
24 2ckx_A NGTRF1, telomere bindin 96.8 0.0017 5.8E-08 50.5 5.4 52 33-98 2-53 (83)
25 2cqq_A RSGI RUH-037, DNAJ homo 96.5 0.0098 3.3E-07 45.0 7.4 52 30-97 7-58 (72)
26 1h8a_C AMV V-MYB, MYB transfor 96.4 0.0012 4.1E-08 54.3 2.4 49 30-97 78-126 (128)
27 2aje_A Telomere repeat-binding 96.4 0.0032 1.1E-07 51.1 4.7 56 28-97 10-65 (105)
28 3osg_A MYB21; transcription-DN 96.4 0.0048 1.6E-07 50.7 5.8 47 29-94 9-55 (126)
29 1gv2_A C-MYB, MYB proto-oncoge 96.1 0.005 1.7E-07 48.6 4.2 46 30-93 3-48 (105)
30 1h8a_C AMV V-MYB, MYB transfor 96.0 0.0073 2.5E-07 49.5 5.0 46 30-93 26-71 (128)
31 1h89_C C-MYB, MYB proto-oncoge 96.0 0.0027 9.4E-08 53.9 2.4 49 30-97 109-157 (159)
32 2k9n_A MYB24; R2R3 domain, DNA 95.9 0.011 3.8E-07 47.1 5.6 44 32-93 2-45 (107)
33 3zqc_A MYB3; transcription-DNA 95.9 0.0038 1.3E-07 51.6 2.6 47 30-95 53-99 (131)
34 1ign_A Protein (RAP1); RAP1,ye 95.6 0.0093 3.2E-07 55.0 4.3 52 30-94 7-58 (246)
35 1wgx_A KIAA1903 protein; MYB D 95.4 0.032 1.1E-06 42.5 6.2 50 30-94 7-56 (73)
36 2iw5_B Protein corest, REST co 95.2 0.025 8.7E-07 51.7 5.6 50 30-98 132-181 (235)
37 1x58_A Hypothetical protein 49 95.1 0.031 1.1E-06 41.4 5.0 52 30-97 7-58 (62)
38 1h89_C C-MYB, MYB proto-oncoge 95.0 0.026 9E-07 47.7 5.1 47 30-94 57-103 (159)
39 3zqc_A MYB3; transcription-DNA 94.3 0.016 5.3E-07 47.8 1.9 44 32-93 3-46 (131)
40 2eqr_A N-COR1, N-COR, nuclear 94.3 0.044 1.5E-06 39.6 4.1 47 29-94 10-56 (61)
41 1ug2_A 2610100B20RIK gene prod 91.6 1.7 5.7E-05 34.5 9.7 59 29-103 31-89 (95)
42 2xag_B REST corepressor 1; ami 89.2 0.32 1.1E-05 48.7 4.7 44 30-92 379-422 (482)
43 2lr8_A CAsp8-associated protei 84.3 0.21 7.1E-06 37.7 0.0 55 32-103 15-69 (70)
44 1fex_A TRF2-interacting telome 82.5 1 3.5E-05 32.4 3.2 52 32-93 3-55 (59)
45 3hm5_A DNA methyltransferase 1 80.5 3.2 0.00011 32.8 5.7 58 32-103 31-88 (93)
46 1gmj_A ATPase inhibitor; coile 74.5 9.6 0.00033 29.6 6.7 52 246-298 13-70 (84)
47 2yqk_A Arginine-glutamic acid 66.8 10 0.00034 27.3 5.0 42 29-89 7-49 (63)
48 4a69_C Nuclear receptor corepr 64.1 5.5 0.00019 31.1 3.4 40 31-89 43-82 (94)
49 4eef_G F-HB80.4, designed hema 46.9 2.5 8.5E-05 32.2 -1.2 46 30-90 19-64 (74)
50 2e8o_A SAM domain and HD domai 43.7 29 0.00099 27.0 4.6 38 10-47 4-43 (103)
51 4iej_A DNA methyltransferase 1 42.8 48 0.0017 26.0 5.6 55 32-100 31-85 (93)
52 2crg_A Metastasis associated p 40.9 35 0.0012 24.9 4.4 44 29-91 6-50 (70)
53 2hzd_A Transcriptional enhance 36.9 96 0.0033 23.8 6.4 67 30-101 5-78 (82)
54 3vem_A Helicase protein MOM1; 29.8 75 0.0026 25.9 4.9 28 248-275 44-76 (115)
55 3oja_B Anopheles plasmodium-re 27.1 2.6E+02 0.009 27.0 9.4 29 260-288 533-561 (597)
56 1pp9_H Ubiquinol-cytochrome C 26.4 48 0.0017 25.1 3.1 41 85-125 22-65 (78)
57 1ign_A Protein (RAP1); RAP1,ye 24.1 1.1E+02 0.0036 28.1 5.4 37 56-101 167-203 (246)
58 1use_A VAsp, vasodilator-stimu 23.1 71 0.0024 22.0 3.1 34 258-298 9-42 (45)
59 2p7n_A Pathogenicity island 1 21.4 1.1E+02 0.0037 29.9 5.2 67 38-105 184-252 (407)
60 2jee_A YIIU; FTSZ, septum, coi 21.0 2.8E+02 0.0096 21.1 7.4 39 253-292 6-44 (81)
61 3vp9_A General transcriptional 20.5 2.8E+02 0.0097 21.6 6.5 41 260-301 43-83 (92)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.85 E-value=1.9e-21 Score=152.32 Aligned_cols=85 Identities=14% Similarity=0.323 Sum_probs=76.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhccC
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKARVVSS 108 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~eK~~~~~S 108 (311)
.|...||++||.+||++|++...+|..+..+..+|++||+.|.++ ||.+|+.||++||++|++.||++|+++..+
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~-----G~~rs~~qC~~K~~nL~k~Yk~~k~~~~~s 76 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREK-----GFDRSPDMCTDKWRNLLKEFKKAKHHDRGN 76 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHCSCSSCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 467899999999999999999999998887777999999999986 578999999999999999999999998765
Q ss_pred CCCCCCCcccchh
Q 021525 109 NGTLTSSWPFFER 121 (311)
Q Consensus 109 ~G~~~s~W~fFd~ 121 (311)
| ..+|+||+.
T Consensus 77 -G--~~~~~yf~e 86 (86)
T 2ebi_A 77 -G--SAKMSYYKE 86 (86)
T ss_dssp -C--CCCCCCCCC
T ss_pred -C--CCCCCCCCc
Confidence 3 349999973
No 2
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.92 E-value=2e-05 Score=58.40 Aligned_cols=52 Identities=21% Similarity=0.417 Sum_probs=39.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKK 96 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKK 96 (311)
.+...||.+|...|+++.... |. ..|..||..+- -..||+.||++|+.+|.|
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~------G~---~~W~~Ia~~~~-------~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKY------GE---GNWAAISKNYP-------FVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHH------CT---TCHHHHHHHSC-------CSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHcc------CC---CchHHHHhhcC-------CCCCCHHHHHHHHHHHhc
Confidence 456689999999999987532 21 25999997652 125899999999999876
No 3
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.67 E-value=8e-05 Score=52.64 Aligned_cols=50 Identities=26% Similarity=0.419 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHH
Q 021525 31 EDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKK 96 (311)
Q Consensus 31 ~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKK 96 (311)
...||.+|...|+++.... | ...|..||..|.- ..+|+.||++|+.+|.+
T Consensus 2 r~~WT~eEd~~L~~~v~~~------G---~~~W~~Ia~~~~~-------~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKY------G---EGNWSKILLHYKF-------NNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHH------C---TTCHHHHHHHSCC-------SSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH------C---cCCHHHHHHHcCC-------CCCCHHHHHHHHHHHHc
Confidence 4589999999999987742 2 1269999998731 14899999999999875
No 4
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.61 E-value=0.00014 Score=52.83 Aligned_cols=48 Identities=23% Similarity=0.475 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTI 94 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~L 94 (311)
-....||.+|-..||++.... | ...|.+||..|- .||+.||++++.+.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~------G---~~~W~~Ia~~~~---------~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDC------G---FGNWQDVANQMC---------TKTKEECEKHYMKY 53 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHT------C---TTCHHHHHHHHT---------TSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH------C---cCcHHHHHHHhC---------CCCHHHHHHHHHHH
Confidence 455689999999999997532 1 136999999993 37999999998754
No 5
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.61 E-value=0.00024 Score=53.22 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKK 97 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKr 97 (311)
.....||.+|-..||+++... |+ .|..||..|- .||+.||++++.++-++
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~------G~----~W~~Ia~~~~---------~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKF------GR----RWTKISKLIG---------SRTVLQVKSYARQYFKN 56 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHT------CS----CHHHHHHHHS---------SSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHH------Cc----CHHHHHHHcC---------CCCHHHHHHHHHHHHHH
Confidence 456689999999999988742 32 7999999873 48999999999887554
No 6
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.75 E-value=9.1e-06 Score=63.85 Aligned_cols=52 Identities=29% Similarity=0.434 Sum_probs=42.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYK 99 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK 99 (311)
.....||.+|-..||+++... |+ .|..||..|- .||+.||++++.++.+++.
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~------G~----~W~~IA~~l~---------gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEH------GR----NWSAIARMVG---------SKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 456689999999999998743 32 5999999884 3799999999998887754
No 7
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.53 E-value=0.00017 Score=52.05 Aligned_cols=48 Identities=29% Similarity=0.460 Sum_probs=37.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTI 94 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~L 94 (311)
.+...||.+|-..||++.... | ...|..||..|. .||+.||++++.++
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~------G---~~~W~~Ia~~~~---------~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQF------G---QQDWKFLASHFP---------NRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHT------C---TTCHHHHHHHCS---------SSCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHh------C---CCCHHHHHHHcc---------CCCHHHHHHHHHHH
Confidence 456689999999999987642 2 136999999873 48999999998764
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.51 E-value=0.00013 Score=51.12 Aligned_cols=47 Identities=30% Similarity=0.638 Sum_probs=37.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTI 94 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~L 94 (311)
+...||.+|-..|+++.... |+ ..|..||..|. .||+.||++++.++
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~------G~---~~W~~Ia~~~~---------~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQN------GT---DDWKVIANYLP---------NRTDVQCQHRWQKV 48 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHH------CS---SCHHHHHHTST---------TCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHh------CC---CCHHHHHHHcC---------CCCHHHHHHHHHHH
Confidence 34689999999999998642 22 26999998873 47999999999775
No 9
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.46 E-value=0.0003 Score=52.26 Aligned_cols=52 Identities=25% Similarity=0.402 Sum_probs=39.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKK 96 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKK 96 (311)
.+...||.+|...||++.... |. ..|..||..|.- ..||+.||++|+.++-+
T Consensus 8 ~~r~~WT~eED~~L~~~v~~~------G~---~~W~~Ia~~~~~-------~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 8 RKRQAWLWEEDKNLRSGVRKY------GE---GNWSKILLHYKF-------NNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp SSCCCCCHHHHHHHHHHHHHH------CS---SCHHHHHHHSCC-------SSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH------CC---CcHHHHHHHcCc-------CCCCHHHHHHHHHHHcC
Confidence 355689999999999987642 21 269999998730 15899999999988764
No 10
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.45 E-value=0.00043 Score=49.95 Aligned_cols=47 Identities=28% Similarity=0.589 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 021525 31 EDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTI 94 (311)
Q Consensus 31 ~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~L 94 (311)
...||.+|-..||++.... | ...|.+||..|- ..||+.||++++.++
T Consensus 9 ~~~WT~eED~~L~~~v~~~------G---~~~W~~IA~~~~--------~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETL------G---LGNWADIADYVG--------NARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHT------T---TTCHHHHHHHHC--------SSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH------C---cCCHHHHHHHHC--------CCCCHHHHHHHHHHH
Confidence 4579999999999998642 1 137999999883 248999999998764
No 11
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.42 E-value=0.00016 Score=55.78 Aligned_cols=47 Identities=26% Similarity=0.450 Sum_probs=37.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTI 94 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~L 94 (311)
.....||.+|..+||++.... | ..|..||..|- .||+.||++++.+|
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~------G----~~W~~IA~~v~---------~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMY------K----DDWNKVSEHVG---------SRTQDECILHFLRL 62 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHS------S----SCHHHHHHHHS---------SCCHHHHHHHHTTS
T ss_pred ccCCCcCHHHHHHHHHHHHHh------C----CCHHHHHHHcC---------CCCHHHHHHHHHHh
Confidence 345689999999999986531 2 37999999983 38999999988644
No 12
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=0.00044 Score=52.00 Aligned_cols=50 Identities=20% Similarity=0.429 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRID 92 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid 92 (311)
....||.+|-..|+++... +..+......|..||..|- .||+.||++++.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~----~g~~~~~~~~W~~IA~~~~---------~Rt~~qcr~r~~ 56 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIK----YPPEEVESRRWQKIADELG---------NRTAKQVASQVQ 56 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHH----SCCCSCHHHHHHHHHHHHS---------SSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH----hCCCCCCcccHHHHHHHhC---------CCCHHHHHHHHH
Confidence 4558999999999998753 2222211258999999983 389999999994
No 13
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.38 E-value=0.0012 Score=55.00 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKY 98 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrY 98 (311)
-+...||.+|..+|++..... +.| .|..|+....... ..||++|||+||.||.+.-
T Consensus 29 r~r~~WT~EEd~~L~~gV~k~----G~g-----~W~~I~~~~~~~~-----~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 29 RIRRPFTVAEVELLVEAVEHL----GTG-----RWRDVKFRAFENV-----HHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCHHHHHHHHHHHHHH----SSS-----CHHHHHHHHHSSS-----CCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH----CCC-----ChHHHHHHhcccc-----CCCCHHHHHHHHHHHHhhc
Confidence 345589999999999987742 222 6999999764311 3699999999999998763
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.35 E-value=0.00023 Score=49.93 Aligned_cols=47 Identities=23% Similarity=0.486 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTI 94 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~L 94 (311)
+...||.+|-..|+++.... |. ..|..||..|. .||+.||++++.+.
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~------G~---~~W~~Ia~~~~---------~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKY------GP---KRWSVIAKHLK---------GRIGKQCRERWHNH 48 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHH------CT---TCHHHHHTTST---------TCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHH------Cc---ChHHHHHHHcC---------CCCHHHHHHHHHHH
Confidence 35689999999999988642 21 36999998773 47999999998753
No 15
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.27 E-value=0.00035 Score=53.26 Aligned_cols=48 Identities=23% Similarity=0.411 Sum_probs=39.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKK 96 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKK 96 (311)
.....||.+|-..||+++... |+ .|..||..| . ||+.|||+++..|++
T Consensus 21 i~k~~wT~EED~~L~~l~~~~------G~----kW~~IA~~l-g---------Rt~~q~knRw~~L~~ 68 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKH------GN----DWATIGAAL-G---------RSASSVKDRCRLMKD 68 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHH------SS----CHHHHHHHH-T---------SCHHHHHHHHHHCSC
T ss_pred CCCCCCCHHHHHHHHHHHHHH------CC----CHHHHHHHh-C---------CCHHHHHHHHHHHHH
Confidence 456689999999999998642 32 399999999 5 599999999988865
No 16
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.26 E-value=0.00086 Score=51.02 Aligned_cols=53 Identities=21% Similarity=0.431 Sum_probs=40.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKK 96 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKK 96 (311)
.....||.+|-.+|+++... +..+ ....|..||..| ..||..||++++.+|..
T Consensus 16 ~~~~~WT~eEd~~L~~al~~----~g~~--~~~rW~~IA~~v---------pGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQ----YPRG--SSDCWDKIARCV---------PSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHH----SCSS--SHHHHHHHGGGC---------SSSCHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHHHH----cCCC--CCchHHHHHHHc---------CCCCHHHHHHHHHHHHH
Confidence 34457999999999998753 2212 345899999877 24899999999998853
No 17
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.25 E-value=0.00087 Score=53.58 Aligned_cols=49 Identities=27% Similarity=0.522 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKK 97 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKr 97 (311)
....||.+|-..||+++... |+ .|..||..|. .||+.||++++.+|.++
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~------G~----~W~~Ia~~l~---------gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEY------GP----KWNKISKFLK---------NRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHT------CS----CHHHHHHHHS---------SSCHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHh------Cc----CHHHHHHHCC---------CCCHHHHHHHHHHHHhh
Confidence 45689999999999998753 32 6999999872 48999999999999876
No 18
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.17 E-value=0.00041 Score=57.15 Aligned_cols=50 Identities=32% Similarity=0.488 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKY 98 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrY 98 (311)
....||.+|...||+++.+. |+ .|..||..| ..||+.||++++.+|.++.
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~------G~----~W~~Ia~~l---------~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEY------GR----QWAIIAKFF---------PGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHH------CS----CHHHHHTTS---------TTCCHHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHHHHH------Cc----CHHHHHHHc---------CCCCHHHHHHHHHHHHHhc
Confidence 44589999999999998654 22 499999765 2489999999999988763
No 19
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.10 E-value=0.001 Score=49.34 Aligned_cols=47 Identities=21% Similarity=0.454 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDT 93 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~ 93 (311)
.+...||.+|-..|+++.... | ...|..||..|. .||+.||++++.+
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~------G---~~~W~~Ia~~l~---------~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKY------G---KNQWSRIASLLH---------RKSAKQCKARWYE 53 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHT------C---SSCHHHHHHHST---------TCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH------C---cCCHHHHHHHhc---------CCCHHHHHHHHHH
Confidence 466799999999999987642 2 136999999873 3799999999865
No 20
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.07 E-value=0.0018 Score=51.47 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 021525 31 EDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEK 102 (311)
Q Consensus 31 ~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~eK 102 (311)
...||.+|-.+|+.+... +..+ ....|..||..|- .||..||++++.+|...-+.+.
T Consensus 8 ~~~WT~eEd~~L~~al~~----~~~~--~~~rW~~IA~~vp---------GRT~~q~k~ry~~l~~dv~~ie 64 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAV----YDKD--TPDRWANVARAVE---------GRTPEEVKKHYEILVEDIKYIE 64 (93)
T ss_dssp CCSCCHHHHHHHHHHHHH----SCTT--CTTHHHHHHHHST---------TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH----cCCC--CCchHHHHHHHcC---------CCCHHHHHHHHHHHHHHHHHhh
Confidence 457999999999888652 2222 2357999999882 3899999999999987765543
No 21
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.96 E-value=0.0022 Score=46.97 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKY 98 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrY 98 (311)
....||.+|-..||++... -|+ .|..||. +- .||+.|||+++.++-+.-
T Consensus 8 ~k~~WT~eED~~L~~~~~~------~g~----~W~~Ia~-~~---------gRt~~qcr~Rw~~~l~~~ 56 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKL------MPT----QWRTIAP-II---------GRTAAQCLEHYEFLLDKA 56 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHH------CTT----CHHHHHH-HH---------SSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH------cCC----CHHHHhc-cc---------CcCHHHHHHHHHHHhChH
Confidence 5568999999999998542 122 6999999 63 279999999999886653
No 22
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=96.90 E-value=0.005 Score=51.17 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=43.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHH
Q 021525 28 PVREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKK 97 (311)
Q Consensus 28 ~~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKr 97 (311)
+-+...||.+|..+|++..... +. -.|..|+..+... -..||++|||+||.+|.+.
T Consensus 14 rr~r~~WT~EEd~~L~~gV~k~----G~-----G~W~~Ia~~~~~~-----f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 14 RRIRRPFSVAEVEALVEAVEHL----GT-----GRWRDVKMRAFDN-----ADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHH----GG-----GCHHHHHHHHCSC-----CSSCCSHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH----CC-----CCHHHHHHHhccc-----cCCCCHHHHHHHHHHHHhh
Confidence 3455589999999999987742 22 2699999887431 1369999999999999986
No 23
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.90 E-value=0.00076 Score=53.44 Aligned_cols=49 Identities=29% Similarity=0.580 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKK 97 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKr 97 (311)
....||.+|-..||+++... |+ .|..||..| ..||+.||++++.+|.++
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~------G~----~W~~Ia~~l---------~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRL------GN----RWAEIAKLL---------PGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHH------SS----CHHHHHTTC---------TTCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHh------CC----CHHHHHHHc---------CCCCHHHHHHHHHHHHhc
Confidence 45689999999999998643 32 599999755 248999999999988654
No 24
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.80 E-value=0.0017 Score=50.53 Aligned_cols=52 Identities=29% Similarity=0.403 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHH
Q 021525 33 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKY 98 (311)
Q Consensus 33 ~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrY 98 (311)
.||.+|..+|++.... ++.| .|..|+..--. +. ..||++|||+|+.||.++-
T Consensus 2 ~WT~eEd~~L~~gv~k----~G~g-----~W~~I~~~~~~---~~--~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEH----LGTG-----RWRDVKMRAFD---NA--DHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCHHHHHHHHHHHHH----HCSS-----CHHHHHHHHCT---TC--TTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----HCCC-----CcHHHHHhhcc---cc--CCCCHHHHHHHHHHHHHhc
Confidence 5999999999998764 2222 69999985211 11 3689999999999998753
No 25
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.47 E-value=0.0098 Score=44.99 Aligned_cols=52 Identities=19% Similarity=0.415 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKK 97 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKr 97 (311)
....||.+|-.+|+.+.. .+..|. ...|+.||..| . ||..||+++++.|+..
T Consensus 7 ~~~~WT~eE~k~fe~al~----~~p~~t--~~RW~~IA~~l-g---------Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMV----KFPGGT--PGRWEKIAHEL-G---------RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHH----HSCTTC--TTHHHHHHHHH-T---------SCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHH----HCCCCC--CcHHHHHHHHh-C---------CCHHHHHHHHHHHHHh
Confidence 455899999999999875 222332 34799999998 2 6999999998888655
No 26
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.45 E-value=0.0012 Score=54.26 Aligned_cols=49 Identities=29% Similarity=0.587 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKK 97 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKr 97 (311)
....||.+|-..||+++... |+ .|..||..| ..||+.||++++.+|.++
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~------G~----~W~~Ia~~l---------~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRL------GN----RWAEIAKLL---------PGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHH------CS----CHHHHGGGS---------TTCCHHHHHHHHHTTTTC
T ss_pred ccccCCHHHHHHHHHHHHHH------Cc----CHHHHHHHC---------CCCCHHHHHHHHHHHHhc
Confidence 45689999999999998743 32 699999765 248999999999887653
No 27
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.41 E-value=0.0032 Score=51.13 Aligned_cols=56 Identities=25% Similarity=0.284 Sum_probs=41.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHH
Q 021525 28 PVREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKK 97 (311)
Q Consensus 28 ~~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKr 97 (311)
+-+...||.+|+.+|++..... +.| .|..|+..+-.. =..||++|||+||.+|.+.
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~----G~g-----~W~~I~~~~~~~-----f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKL----GTG-----RWRDVKLCAFED-----ADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHH----CSS-----SHHHHHSSSSSS-----TTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHh----CCC-----ChHHHHHHhccc-----cCCCCHHHHHHHHHHHHhh
Confidence 3455689999999999987632 222 699999744211 1369999999999999875
No 28
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.39 E-value=0.0048 Score=50.65 Aligned_cols=47 Identities=23% Similarity=0.502 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTI 94 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~L 94 (311)
.+...||.+|...|+++.... |. .|.+||..|. .||+.||+.++.+.
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~------G~----~W~~Ia~~~~---------~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQH------GS----DWKMIAATFP---------NRNARQCRDRWKNY 55 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHH------TT----CHHHHHHTCT---------TCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHh------CC----CHHHHHHHcC---------CCCHHHHHHHHhhh
Confidence 456689999999999998753 32 6999998763 47999999998763
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.08 E-value=0.005 Score=48.63 Aligned_cols=46 Identities=22% Similarity=0.497 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDT 93 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~ 93 (311)
....||.+|...|+++.... |. ..|..||..|. .||+.||+.++.+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~------g~---~~W~~Ia~~l~---------~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKY------GP---KRWSVIAKHLK---------GRIGKQCRERWHN 48 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHH------CT---TCHHHHHTTST---------TCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHh------CC---CcHHHHhhhhc---------CCCHHHHHHHHHh
Confidence 34589999999999987642 21 36999998762 4799999998765
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.00 E-value=0.0073 Score=49.47 Aligned_cols=46 Identities=24% Similarity=0.590 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDT 93 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~ 93 (311)
....||.+|...|+++.... |. ..|.+||..|. .+|+.||++++.+
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~------g~---~~W~~Ia~~l~---------~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKY------GP---KRWSDIAKHLK---------GRIGKQCRERWHN 71 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHT------CS---CCHHHHHHHSS---------SCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH------CC---CCHHHHHHHhc---------CCcHHHHHHHHHH
Confidence 45689999999999987642 21 35999998773 4799999998865
No 31
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=96.00 E-value=0.0027 Score=53.85 Aligned_cols=49 Identities=27% Similarity=0.559 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKK 97 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKr 97 (311)
+...||.+|-..||+++... | ..|.+||..| ..||+.||+|++.+|.++
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~------g----~~W~~Ia~~l---------~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRL------G----NRWAEIAKLL---------PGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHH------C----SCHHHHHTTS---------TTCCHHHHHHHHHTTTCC
T ss_pred cccCCChHHHHHHHHHHHHH------C----CCHHHHHHHC---------CCCCHHHHHHHHHHHHhc
Confidence 55689999999999998643 3 2699999765 248999999999987543
No 32
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=95.94 E-value=0.011 Score=47.06 Aligned_cols=44 Identities=27% Similarity=0.442 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 021525 32 DCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDT 93 (311)
Q Consensus 32 ~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~ 93 (311)
..||.+|-..|+++.... | ...|..||..|. .||+.||+.++.+
T Consensus 2 ~~Wt~eED~~L~~~v~~~------g---~~~W~~Ia~~~~---------~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRY------G---AKDWIRISQLMI---------TRNPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHH------C---SSCHHHHHHHTT---------TSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH------C---CCCHHHHhhhcC---------CCCHHHHHHHHHH
Confidence 479999999999987642 2 136999998873 3799999988764
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.86 E-value=0.0038 Score=51.58 Aligned_cols=47 Identities=26% Similarity=0.480 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIK 95 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LK 95 (311)
....||.+|-..||+++... | ..|..||..| ..||+.||++++.++-
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~------G----~~W~~Ia~~l---------~gRt~~~~k~rw~~~l 99 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKL------G----SKWSVIAKLI---------PGRTDNAIKNRWNSSI 99 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHS------C----SCHHHHTTTS---------TTCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHH------C----cCHHHHHHHc---------CCCCHHHHHHHHHHHH
Confidence 44589999999999987532 2 2499999765 2489999999987654
No 34
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=95.58 E-value=0.0093 Score=54.96 Aligned_cols=52 Identities=10% Similarity=0.218 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTI 94 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~L 94 (311)
....||.+|-..||+++...-. ....++.|.+||..| ..+|+.|||++|.++
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn----~r~ghk~W~~IAk~L---------pGRT~nsIRnRw~~~ 58 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPT----RRTTHTLYDEISHYV---------PNHTGNSIRHRFRVY 58 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGG----GTTCSHHHHHHTTTS---------TTSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCc----CccccccHHHHHHHc---------CCCCHHHHHHHHHHH
Confidence 4568999999999999875221 111345799999765 348999999999983
No 35
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.45 E-value=0.032 Score=42.49 Aligned_cols=50 Identities=24% Similarity=0.456 Sum_probs=37.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTI 94 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~L 94 (311)
....||.+|..+|..|.. .+..+ ....|+.||..|- .||..||+.+++.|
T Consensus 7 ~~~~WT~eE~k~fe~ALa----~~~~~--tp~rWe~IA~~V~---------gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFA----SLPKH--KPGFWSEVAAAVG---------SRSPEECQRKYMEN 56 (73)
T ss_dssp SSSCCCHHHHHHHHHHHH----HSCSS--SSSHHHHHHHHTT---------TSCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHH----HCCCC--CccHHHHHHHHcC---------CCCHHHHHHHHHHH
Confidence 345799999999999855 22222 2347999999882 38999999777666
No 36
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=95.15 E-value=0.025 Score=51.70 Aligned_cols=50 Identities=24% Similarity=0.490 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKY 98 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrY 98 (311)
....||++|..+++++... + | ++|..||+.|- .||..||++-+-+-|++|
T Consensus 132 ~s~~WTeEE~~lFleAl~k----Y--G----KDW~~IAk~Vg---------TKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRK----Y--G----RDFQAISDVIG---------NKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHH----H--S----SCHHHHHHHHS---------SCCHHHHHHHHHHTTTTT
T ss_pred cCCCCCHHHHHHHHHHHHH----H--C----cCHHHHHHHcC---------CCCHHHHHHHHHHHHHHh
Confidence 4568999999999998763 1 2 36999999982 489999999886666553
No 37
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.11 E-value=0.031 Score=41.35 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKK 97 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKr 97 (311)
....||++|+..||+.+... |+ .|..|+..-.- -..||.+..++|+.+|.|+
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~------G~----~W~~I~~~y~f------~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTM------GN----HWNSILWSFPF------QKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHH------CS----CHHHHHHHSCC------CTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHH------hH----hHHHHHHhCCC------ccCcccchHHHHHHHHHhc
Confidence 45589999999999988744 32 69999965421 1369999999999998763
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.04 E-value=0.026 Score=47.71 Aligned_cols=47 Identities=21% Similarity=0.470 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTI 94 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~L 94 (311)
....||.+|-..||+++... |. ..|..||..|. .||+.||++++.++
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~------g~---~~W~~Ia~~l~---------~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKY------GP---KRWSVIAKHLK---------GRIGKQCRERWHNH 103 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHH------CS---CCHHHHHHTST---------TCCHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHh------Cc---ccHHHHHHHcC---------CCCHHHHHHHHHHH
Confidence 45689999999999988642 21 35999998763 47999999988653
No 39
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=94.32 E-value=0.016 Score=47.82 Aligned_cols=44 Identities=16% Similarity=0.391 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 021525 32 DCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDT 93 (311)
Q Consensus 32 ~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~ 93 (311)
..||.+|-..|+++.... | ...|..||..|- .||+.||+.++.+
T Consensus 3 g~Wt~eED~~L~~~v~~~------g---~~~W~~Ia~~~~---------~Rt~~qcr~Rw~~ 46 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKEN------G---PQNWPRITSFLP---------NRSPKQCRERWFN 46 (131)
T ss_dssp SSCCHHHHHHHHHHHHHH------C---SCCGGGGTTSCT---------TSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh------C---cCCHHHHHHHHC---------CCCHHHHHHHHhh
Confidence 479999999999887643 2 126999997662 4899999998865
No 40
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.31 E-value=0.044 Score=39.63 Aligned_cols=47 Identities=11% Similarity=0.203 Sum_probs=35.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTI 94 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~L 94 (311)
...+.||++|-.++++++... | +.|..||..| ..||..||....-.-
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~------g----k~w~~Ia~~l---------~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQH------P----KNFGLIASYL---------ERKSVPDCVLYYYLT 56 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHS------T----TCHHHHHHHC---------TTSCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHh------C----CCHHHHHHHc---------CCCCHHHHHHHHHHh
Confidence 345689999999999998742 2 4799999666 248999998765443
No 41
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=91.60 E-value=1.7 Score=34.53 Aligned_cols=59 Identities=10% Similarity=0.258 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKA 103 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~eK~ 103 (311)
..=..||.++-..+|.++..+-. ..+.|..||..|. +|++.|.++||..|.+-|.+...
T Consensus 31 e~VvlWTRe~DR~IL~~cQ~~G~-------s~~tFa~iA~~L~---------Nks~nqV~~RFq~Lm~Lf~~~~~ 89 (95)
T 1ug2_A 31 EKVVLWTREADRVILTMCQEQGA-------QPHTFSVISQQLG---------NKTPVEVSHRFRELMQLFHTACE 89 (95)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTTS-------CTTTHHHHHHHHS---------SCCHHHHHHHHHHHHHHHHHCSS
T ss_pred CEEEEeccccCHHHHHHHHhcCC-------ChhHHHHHHHHHc---------cCCHHHHHHHHHHHHHHHHHHhc
Confidence 33347999999999999875422 2358999999884 36999999999999999987443
No 42
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=89.21 E-value=0.32 Score=48.73 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=34.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRID 92 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid 92 (311)
....||++|..++++++.. ++ ++|..||+.|- .||..||++=+-
T Consensus 379 ~~~~WT~eE~~~f~~al~~----yG------kdw~~IA~~Vg---------TKT~~Qvk~fy~ 422 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRK----YG------RDFQAISDVIG---------NKSVVQVKNFFV 422 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHH----HT------TCHHHHHHHHS---------SCCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH----HC------cCHHHHHHHhC---------CCCHHHHHHHHH
Confidence 4568999999999988763 22 37999999983 479999998543
No 43
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=84.34 E-value=0.21 Score=37.69 Aligned_cols=55 Identities=15% Similarity=0.265 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 021525 32 DCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKA 103 (311)
Q Consensus 32 ~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~eK~ 103 (311)
..||.++-..+|..+.++-. ..+.|..||..|+ ||+.|..+||..|.+-|.+-|-
T Consensus 15 vlWTReeDR~IL~~cq~~G~-------s~~tfa~iA~~Ln----------ks~~QV~~RF~~Lm~Lf~kSk~ 69 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGP-------SSKTFAYLAAKLD----------KNPNQVSERFQQLMKLFEKSKC 69 (70)
Confidence 46999999999988875422 2358999998773 5999999999999999987653
No 44
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=82.54 E-value=1 Score=32.44 Aligned_cols=52 Identities=8% Similarity=0.076 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHH-HHHHhccCCCCCCCCHHHHHHHHHH
Q 021525 32 DCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVAD-AVNALHAHSKKTHRTDVQCKNRIDT 93 (311)
Q Consensus 32 ~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~-~v~~r~g~~~~~~rT~~QCrnKid~ 93 (311)
..+|.++-..||+--.+... ...+-..+++|+++|+ .+ ...|+.+||+++.+
T Consensus 3 ~~FT~edD~~L~~~v~~~~~-~~~~~~Gn~iwk~la~~~~---------~~HtwqSwRdRy~k 55 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENAR-SPSSVTGNALWKAMEKSSL---------TQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCC-STTTTTSSHHHHHHHHSCS---------SSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcc-ccCCCccHHHHHHHHHhHC---------CCCCHHHHHHHHHH
Confidence 47899999999875443321 1122224579999998 33 45799999998753
No 45
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=80.47 E-value=3.2 Score=32.76 Aligned_cols=58 Identities=24% Similarity=0.252 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 021525 32 DCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKA 103 (311)
Q Consensus 32 ~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~eK~ 103 (311)
+.||.+||..|++...+... .|--|++...-. ....||..+.|+|+-.+-++..+.+.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl----------RW~vI~DRy~~~----~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL----------RFVVIHDRYDHQ----QFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----------CHHHHHHHSCTT----TSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhCC----------CeeeehhhhccC----CCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999875432 488888887521 11369999999988888887776653
No 46
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=74.51 E-value=9.6 Score=29.59 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Q 021525 246 KAIERFGEVYERVEAEK------LRQMVELEKQRMQFASDLEMQRLRMFTEMQVQLERN 298 (311)
Q Consensus 246 ~ai~~f~e~yer~E~~K------~~~~~e~Ek~Rme~~kelE~~r~q~~~~~Q~ei~k~ 298 (311)
.+|+.-|.+|-++|.|. +++...|.+.|-....||+.+.-+ |.+-|-+|.++
T Consensus 13 gsir~aggaFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~e-i~~le~~i~rh 70 (84)
T 1gmj_A 13 GAVRDAGGAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKE-IERLQKEIERH 70 (84)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CcccccCCCcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 46777777788887774 444555666665444455554433 45555555443
No 47
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.77 E-value=10 Score=27.27 Aligned_cols=42 Identities=14% Similarity=0.386 Sum_probs=30.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHH-HHHhccCCCCCCCCHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADA-VNALHAHSKKTHRTDVQCKN 89 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~-v~~r~g~~~~~~rT~~QCrn 89 (311)
.....||++|....++++.. +. ++|..|+.. | ..||..||..
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~----yG------Kdf~~I~~~~v---------~~Kt~~~~v~ 49 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQ----YG------KNFFRIRKELL---------PNKETGELIT 49 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHH----TC------SCHHHHHHHSC---------TTSCHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHH----hC------ccHHHHHHHHc---------CCCcHHHHHH
Confidence 34579999999888777652 22 369999875 4 2489999953
No 48
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=64.06 E-value=5.5 Score=31.08 Aligned_cols=40 Identities=20% Similarity=0.410 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 021525 31 EDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKN 89 (311)
Q Consensus 31 ~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrn 89 (311)
.+.||++|..++.+++... .+.|..||..| ..||..||-.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~----------gK~F~~Ia~~l---------~~Kt~~~cV~ 82 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQH----------PKNFGLIASFL---------ERKTVAECVL 82 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHS----------TTCHHHHHHTC---------TTCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc----------CCCHHHHHHHc---------CCCCHHHHHH
Confidence 4689999998888887632 24788997655 3589999963
No 49
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=46.92 E-value=2.5 Score=32.19 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=30.7
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNR 90 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnK 90 (311)
....||.++-.+|-.|.... ..+ .-..|+.||..| ..||..+|+..
T Consensus 19 ss~~WT~eE~K~FE~ALa~y----p~~--tpdRWekIA~~V---------pGKT~eEVk~h 64 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFT----NKD--TPDRWKKVAQYV---------KGRTPEEVKKH 64 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSS----CSS--CCSSSTTTGGGS---------CSSCHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHHHC----CCC--CCcHHHHHHHHc---------CCCCHHHHHHH
Confidence 34579999999988775421 222 134699999877 24899999864
No 50
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.73 E-value=29 Score=26.95 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCCCCC-C-CCCCCCCCCHHHHHHHHHHHh
Q 021525 10 PSTTTTTPTSTTPYSR-P-LPVREDCWSEEATSTLVDAWG 47 (311)
Q Consensus 10 ~~~~~~~~~~~~p~~~-~-~~~r~~~WSe~eT~~LLdaw~ 47 (311)
|++.|.||+..+...+ . ....-..||.++|..-|...+
T Consensus 4 ~~~~~~tp~~~~~~~~~~~~~~~v~~Ws~~~V~~WL~~lg 43 (103)
T 2e8o_A 4 GSSGSNTPSAEADWSPGLELHPDYKTWGPEQVCSFLRRGG 43 (103)
T ss_dssp CCCCCCCCSCCCSCCSCCCCCSCGGGCHHHHHHHHHHHHT
T ss_pred CCCCCCCccccccCCCccccccChhhCCHHHHHHHHHHcC
Confidence 4555555544443332 1 122233799999998887544
No 51
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=42.80 E-value=48 Score=26.03 Aligned_cols=55 Identities=24% Similarity=0.246 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 021525 32 DCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKI 100 (311)
Q Consensus 32 ~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~ 100 (311)
+.||.+||..|+++-.+..+ .|--|++...-. ....||..+-|.++=.+-++.-+
T Consensus 31 ~~WT~eETd~LfdLc~~fdl----------Rw~vI~DRy~~~----~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL----------RFVVIHDRYDHQ----QFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----------CHHHHHHHCCTT----TSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC----------CeEEEeeccccC----CCCCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999998775433 377787766421 12357766665555555444433
No 52
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=40.85 E-value=35 Score=24.89 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=31.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHH-HHHhccCCCCCCCCHHHHHHHH
Q 021525 29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADA-VNALHAHSKKTHRTDVQCKNRI 91 (311)
Q Consensus 29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~-v~~r~g~~~~~~rT~~QCrnKi 91 (311)
..-+.||++|..+..+++.. ++ ++|..|+.. | ..+|..||..=.
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~----yG------Kdf~~I~~~~v---------~~Kt~~~~v~fY 50 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEK----YG------KDFNDIRQDFL---------PWKSLTSIIEYY 50 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHH----TC------SCHHHHHHTTC---------SSSCHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH----hC------ccHHHHHHHHc---------CCCCHHHHHHHH
Confidence 45568999999888776652 11 358899863 4 358999997544
No 53
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=36.90 E-value=96 Score=23.79 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHhhhH------Hhh-hcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 021525 30 REDCWSEEATSTLVDAWGRRY------LEL-NRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIE 101 (311)
Q Consensus 30 r~~~WSe~eT~~LLdaw~ek~------~~l-~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~e 101 (311)
.+..|++.--.+++++..--. +.+ .+|.+.. -.+-||+.+..++| ..+|.+||-..|.-||+....+
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~g-RNelIs~yI~~~tG----k~RtrKQVSShiQvlk~~~~~~ 78 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYG-RNELIARYIKLRTG----KTRTRKQVSSHIQVLARRKSRD 78 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCC-THHHHHHHHHHHHS----CCCCSHHHHHHHHHHHHHHTTC
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccc-hhHHHHHHHHHHHc----ccCCccchhHHHHHHHHHHhhh
Confidence 456899888888888765421 111 1232210 24559999998876 5799999999999999886543
No 54
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=29.75 E-value=75 Score=25.92 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=12.6
Q ss_pred HHHHHHHHHHH-HHHHHHHHH----HHHHHHhh
Q 021525 248 IERFGEVYERV-EAEKLRQMV----ELEKQRMQ 275 (311)
Q Consensus 248 i~~f~e~yer~-E~~K~~~~~----e~Ek~Rme 275 (311)
|++..+..-++ |..|++--. |||+.|-+
T Consensus 44 Lr~~~d~~~K~HE~kklqLkse~e~E~ae~k~K 76 (115)
T 3vem_A 44 LRRESENSKKTFEEKKSILKAELERKMAEVQAE 76 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333 444555444 45555543
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.12 E-value=2.6e+02 Score=27.03 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 021525 260 AEKLRQMVELEKQRMQFASDLEMQRLRMF 288 (311)
Q Consensus 260 ~~K~~~~~e~Ek~Rme~~kelE~~r~q~~ 288 (311)
..++++...+|+.+.+..+.+|.++-+++
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence 44455555555666666666666655544
No 56
>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...
Probab=26.44 E-value=48 Score=25.11 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=28.4
Q ss_pred HHHH--HHHHHHHHHHHHHHhhhcc-CCCCCCCCcccchhHHHh
Q 021525 85 VQCK--NRIDTIKKKYKIEKARVVS-SNGTLTSSWPFFERMDTL 125 (311)
Q Consensus 85 ~QCr--nKid~LKKrYK~eK~~~~~-S~G~~~s~W~fFd~MD~L 125 (311)
.+|+ .+...++..|..--+|+.+ +.+.....+.|||-|.-+
T Consensus 22 e~C~~~~~C~~~~~~y~~C~eRV~s~~~~~e~C~ee~fd~~hCv 65 (78)
T 1pp9_H 22 EQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHAR 65 (78)
T ss_dssp HHHTTSHHHHHHHHHHHHHHHHHHTCSSCSCCSHHHHHHHHHHH
T ss_pred HHHhcchhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3566 5677777788776555533 334568999999998765
No 57
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=24.12 E-value=1.1e+02 Score=28.13 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=27.9
Q ss_pred CCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 021525 56 GNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIE 101 (311)
Q Consensus 56 g~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~e 101 (311)
|.+.-..|++||+.. ..+|+..-|+|+.++-+.|-..
T Consensus 167 gp~~~~~fk~ia~~~---------P~HT~~SWRdRyrKfl~~~gi~ 203 (246)
T 1ign_A 167 GPIAREFFKHFAEEH---------AAHTENAWRDRFRKFLLAYGID 203 (246)
T ss_dssp CCCCTTHHHHHHHHT---------TTSCHHHHHHHHHHTHHHHCHH
T ss_pred CcchHHHHHHHHHHC---------CCCChhhHHHHHHHHHhhcChH
Confidence 444445899999876 3469999999999888887443
No 58
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=23.09 E-value=71 Score=21.98 Aligned_cols=34 Identities=12% Similarity=0.223 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Q 021525 258 VEAEKLRQMVELEKQRMQFASDLEMQRLRMFTEMQVQLERN 298 (311)
Q Consensus 258 ~E~~K~~~~~e~Ek~Rme~~kelE~~r~q~~~~~Q~ei~k~ 298 (311)
+|.-|++-+.| +|. |+---..+||.--+.|+.+.
T Consensus 9 le~~KqEIL~E---~Rk----ElqK~K~EIIeAi~~El~~~ 42 (45)
T 1use_A 9 LQRVKQELLEE---VKK----ELQKVKEEIIEAFVQELRKR 42 (45)
T ss_dssp HHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHhc
Confidence 45555554433 333 44445567777777777653
No 59
>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum}
Probab=21.42 E-value=1.1e+02 Score=29.95 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhHHhhhcCCcCh--HhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 021525 38 ATSTLVDAWGRRYLELNRGNLRQ--KDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKARV 105 (311)
Q Consensus 38 eT~~LLdaw~ek~~~l~rg~lR~--k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~eK~~~ 105 (311)
.+..+|..=++.|+.+...-.+. +-|++|.+.|+...+|. ...+.+.-.+-+.++|++.|.+.+++.
T Consensus 184 ~Isd~I~nIksdYldvYa~IvK~YTdyyQdfNeaLSklSdyI-sAGkDGNkIkFd~~sfk~al~kl~~KY 252 (407)
T 2p7n_A 184 MISDQIGKIKDNYLGVYENVVGQYTDFYKAFSDILSQMANWI-KPGGDGNKVKLNVDALKAALEKLKKDF 252 (407)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHGGGC-C---------CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCCCCeeeecHHHHHHHHHHHHHhh
Confidence 45667777777777766554444 46999999998876654 334455566666679999999887776
No 60
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.05 E-value=2.8e+02 Score=21.13 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 021525 253 EVYERVEAEKLRQMVELEKQRMQFASDLEMQRLRMFTEMQ 292 (311)
Q Consensus 253 e~yer~E~~K~~~~~e~Ek~Rme~~kelE~~r~q~~~~~Q 292 (311)
|+|+.+|..=++.+..+.-.+|+. .||..+-..+-.+.|
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEi-eELKekN~~L~~e~~ 44 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEI-EELKEKNNSLSQEVQ 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 788888865555555577777752 244444444433333
No 61
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=20.50 E-value=2.8e+02 Score=21.56 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 021525 260 AEKLRQMVELEKQRMQFASDLEMQRLRMFTEMQVQLERNKRT 301 (311)
Q Consensus 260 ~~K~~~~~e~Ek~Rme~~kelE~~r~q~~~~~Q~ei~k~~~~ 301 (311)
..=..|+.||+-+|-- .-|||...+.|-..-.-||.+|++.
T Consensus 43 ~ki~~Qi~Emq~Ir~t-vyeLE~~h~kmKq~YEeEI~rLr~e 83 (92)
T 3vp9_A 43 FKMNQQLAEMQQIRNT-VYERELTHRKMKDAYEEEIKHLKLG 83 (92)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346788899888853 4589999999999999999999874
Done!