BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021527
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RD5|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha Chain
Homolog Bx1: A Member Of The Chemical Plant Defense
System
pdb|1RD5|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha Chain
Homolog Bx1: A Member Of The Chemical Plant Defense
System
Length = 262
Score = 328 bits (841), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 152/261 (58%), Positives = 203/261 (77%), Gaps = 4/261 (1%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
+++T L +GK A IPYITAGDPDL+TTAEAL+LLD CG+D+IELGVP SDP DGP+
Sbjct: 5 VSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPI 64
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR 169
IQA+ R+LA GT +A+L ML+EV P++SCP+ L +YY PI+ R ++ +++ G+
Sbjct: 65 IQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRS----LAKMKEAGVH 120
Query: 170 GLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229
GL+VPD+P SL EA N +ELVL TTP P DRMK I +ASEGFVYLVS GVTG
Sbjct: 121 GLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTG 180
Query: 230 ARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA 289
RA+++ V++L++E+K+ + KPVAVGFGISKPEHV+Q+A WGADGVI+GSAMV+ LGEA
Sbjct: 181 PRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEA 240
Query: 290 QSPEEGLKELEKFAKSLKSAL 310
SP++GL+ LE++A+ +K+AL
Sbjct: 241 ASPKQGLRRLEEYARGMKNAL 261
>pdb|1TJR|A Chain A, Crystal Structure Of Wild-Type Bx1 Complexed With A
Sulfate Ion
pdb|1TJR|B Chain B, Crystal Structure Of Wild-Type Bx1 Complexed With A
Sulfate Ion
Length = 261
Score = 319 bits (818), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 150/262 (57%), Positives = 198/262 (75%), Gaps = 4/262 (1%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
+++T L +GK A IPYITAGDPDL+TTAEAL+LLD CG+D+IELGVP SDP DGP+
Sbjct: 4 VSDTXAALXAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPI 63
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR 169
IQA+ R+LA GT +A+L L+EV P++SCP+ L +YY PI R ++ ++ G+
Sbjct: 64 IQASVARALASGTTXDAVLEXLREVTPELSCPVVLLSYYKPIXSRS----LAEXKEAGVH 119
Query: 170 GLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229
GL+VPD+P SL EA N +ELVL TTP P DR K I +ASEGFVYLVS GVTG
Sbjct: 120 GLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRXKEITKASEGFVYLVSVNGVTG 179
Query: 230 ARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA 289
RA+++ V++L++E+K+ + KPVAVGFGISKPEHV+Q+A WGADGVI+GSA V+ LGEA
Sbjct: 180 PRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAXVRQLGEA 239
Query: 290 QSPEEGLKELEKFAKSLKSALP 311
SP++GL+ LE++A+ K+ALP
Sbjct: 240 ASPKQGLRRLEEYARGXKNALP 261
>pdb|2DZU|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110n) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZU|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110n) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 1/225 (0%)
Query: 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123
+LIPY+TAGDPD +T L LD + IELG+P+SDP+ADG IQ + R+L G
Sbjct: 6 SLIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFK 64
Query: 124 FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETES 183
++KE S PI L TYYNPI + GV NF++ + G+ G++V D+P+ +
Sbjct: 65 LREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVNGILVVDLPVFHAKE 124
Query: 184 LQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLR 243
+ A + I+ V P TP +R+K I + + GFVYLVS G TGAR I LLR
Sbjct: 125 FTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLR 184
Query: 244 EIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288
K VAVGFG+SK EHV + GA+GV+VGSA+VK++GE
Sbjct: 185 RAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGE 229
>pdb|2DZS|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E103a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZS|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E103a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 191 bits (484), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 1/225 (0%)
Query: 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123
+LIPY+TAGDPD +T L LD + IELG+P+SDP+ADG IQ + R+L G
Sbjct: 6 SLIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFK 64
Query: 124 FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETES 183
++KE S PI L TYYNPI + GV NF++ + G+ G++V D+P+ +
Sbjct: 65 LREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAAAKASGVDGILVVDLPVFHAKE 124
Query: 184 LQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLR 243
+ A + I+ V P TP +R+K I + + GFVYLVS G TGAR I LLR
Sbjct: 125 FTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLR 184
Query: 244 EIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288
K VAVGFG+SK EHV + GA+GV+VGSA+VK++GE
Sbjct: 185 RAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGE 229
>pdb|2DZV|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D146a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZV|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D146a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 191 bits (484), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 1/225 (0%)
Query: 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123
+LIPY+TAGDPD +T L LD + IELG+P+SDP+ADG IQ + R+L G
Sbjct: 6 SLIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFK 64
Query: 124 FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETES 183
++KE S PI L TYYNPI + GV NF++ + G+ G++V D+P+ +
Sbjct: 65 LREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKE 124
Query: 184 LQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLR 243
+ A + I+ V P TP +R+K I + + GFVYLVS G TGAR I LLR
Sbjct: 125 FTEIAREEGIKTVFLAAPNTPAERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLR 184
Query: 244 EIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288
K VAVGFG+SK EHV + GA+GV+VGSA+VK++GE
Sbjct: 185 RAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGE 229
>pdb|2DZW|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E244a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZW|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E244a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 190 bits (483), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 1/225 (0%)
Query: 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123
+LIPY+TAGDPD +T L LD + IELG+P+SDP+ADG IQ + R+L G
Sbjct: 6 SLIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFK 64
Query: 124 FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETES 183
++KE S PI L TYYNPI + GV NF++ + G+ G++V D+P+ +
Sbjct: 65 LREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKE 124
Query: 184 LQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLR 243
+ A + I+ V P TP +R+K I + + GFVYLVS G TGAR I LLR
Sbjct: 125 FTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLR 184
Query: 244 EIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288
K VAVGFG+SK EHV + GA+GV+VGSA+VK++GE
Sbjct: 185 RAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGE 229
>pdb|1GEQ|A Chain A, Entropic Stabilization Of The Tryptophan Synthase
A-Subunit From A Hyperthermophile, Pyrococcus Furiosus:
X-Ray Analysis And Calorimetry
pdb|1GEQ|B Chain B, Entropic Stabilization Of The Tryptophan Synthase
A-Subunit From A Hyperthermophile, Pyrococcus Furiosus:
X-Ray Analysis And Calorimetry
pdb|1WDW|A Chain A, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|C Chain C, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|E Chain E, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|G Chain G, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|I Chain I, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|K Chain K, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
Length = 248
Score = 190 bits (483), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 1/225 (0%)
Query: 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123
+LIPY+TAGDPD +T L LD + IELG+P+SDP+ADG IQ + R+L G
Sbjct: 6 SLIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFK 64
Query: 124 FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETES 183
++KE S PI L TYYNPI + GV NF++ + G+ G++V D+P+ +
Sbjct: 65 LREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKE 124
Query: 184 LQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLR 243
+ A + I+ V P TP +R+K I + + GFVYLVS G TGAR I LLR
Sbjct: 125 FTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLR 184
Query: 244 EIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288
K VAVGFG+SK EHV + GA+GV+VGSA+VK++GE
Sbjct: 185 RAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGE 229
>pdb|2DZT|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZT|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 190 bits (483), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 1/225 (0%)
Query: 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123
+LIPY+TAGDPD +T L LD + IELG+P+SDP+ADG IQ + R+L G
Sbjct: 6 SLIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFK 64
Query: 124 FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETES 183
++KE S PI L TYYNPI + GV NF++ + G+ G++V D+P+ +
Sbjct: 65 LREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVAGILVVDLPVFHAKE 124
Query: 184 LQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLR 243
+ A + I+ V P TP +R+K I + + GFVYLVS G TGAR I LLR
Sbjct: 125 FTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLR 184
Query: 244 EIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288
K VAVGFG+SK EHV + GA+GV+VGSA+VK++GE
Sbjct: 185 RAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGE 229
>pdb|2EKC|A Chain A, Structural Study Of Project Id Aq_1548 From Aquifex
Aeolicus Vf5
pdb|2EKC|B Chain B, Structural Study Of Project Id Aq_1548 From Aquifex
Aeolicus Vf5
Length = 262
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 155/265 (58%), Gaps = 12/265 (4%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
+++ FT LK++ + AL+ Y+ G PD T+ +A K + G+DI+E+G P+SDP+ADGP
Sbjct: 4 ISDKFTELKEKREKALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPT 63
Query: 110 IQAAATRSLARGTNFNAILSM---LKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDI 166
IQ A +L G F +L + L++ P + P L TYYNPI + G++ F R+
Sbjct: 64 IQVAHEVALKNGIRFEDVLELSETLRKEFPDI--PFLLMTYYNPIFRIGLEKFCRLSREK 121
Query: 167 GIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226
GI G +VPD+P EE E L+ K + V PT+ R+K I EA++ Y VS G
Sbjct: 122 GIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVSVTG 181
Query: 227 VTGARASI-SGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285
TGAR + ++ + E +E KPV VGFG+SK EH +++ + ADGV+VGSA+VKL
Sbjct: 182 TTGAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHAREIGSF-ADGVVVGSALVKL 240
Query: 286 LGEAQSPEEGLKELEKFAKSLKSAL 310
G+ + +++L K LK L
Sbjct: 241 AGQKK-----IEDLGNLVKELKEGL 260
>pdb|2DZX|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E131- 132a) From A Hyperthermophile, Pyrococcus
Furiosus
pdb|2DZX|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E131- 132a) From A Hyperthermophile, Pyrococcus
Furiosus
Length = 248
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 134/225 (59%), Gaps = 1/225 (0%)
Query: 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123
+LIPY+TAGDPD +T L LD + IELG+P+SDP+ADG IQ + R+L G
Sbjct: 6 SLIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFK 64
Query: 124 FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETES 183
++KE S PI L TYYNPI + GV NF++ + G+ G++V D+P+ +
Sbjct: 65 LREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKE 124
Query: 184 LQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLR 243
+ A I+ V P TP +R+K I + + GFVYLVS G TGAR I LLR
Sbjct: 125 FTEIARAAGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLR 184
Query: 244 EIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288
K VAVGFG+SK EHV + GA+GV+VGSA+VK++GE
Sbjct: 185 RAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGE 229
>pdb|2DZP|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D17n) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZP|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D17n) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 135/225 (60%), Gaps = 1/225 (0%)
Query: 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123
+LIPY+TAGDP+ +T L LD + IELG+P+SDP+ADG IQ + R+L G
Sbjct: 6 SLIPYLTAGDPNKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFK 64
Query: 124 FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETES 183
++KE S PI L TYYNPI + GV NF++ + G+ G++V D+P+ +
Sbjct: 65 LREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKE 124
Query: 184 LQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLR 243
+ A + I+ V P TP +R+K I + + GFVYLVS G TGAR I LLR
Sbjct: 125 FTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLR 184
Query: 244 EIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288
K VAVGFG+SK EHV + GA+GV+VGSA+VK++GE
Sbjct: 185 RAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGE 229
>pdb|2E09|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E74a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2E09|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E74a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 187 bits (476), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 134/225 (59%), Gaps = 1/225 (0%)
Query: 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123
+LIPY+TAGDPD +T L LD + IELG+P+SDP+ADG IQ + R+L G
Sbjct: 6 SLIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFK 64
Query: 124 FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETES 183
++K S PI L TYYNPI + GV NF++ + G+ G++V D+P+ +
Sbjct: 65 LREAFWIVKAFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKE 124
Query: 184 LQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLR 243
+ A + I+ V P TP +R+K I + + GFVYLVS G TGAR I LLR
Sbjct: 125 FTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLR 184
Query: 244 EIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288
K VAVGFG+SK EHV + GA+GV+VGSA+VK++GE
Sbjct: 185 RAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGE 229
>pdb|1UJP|A Chain A, Crystal Structure Of Tryptophan Synthase A-Subunit From
Thermus Thermophilus Hb8
pdb|1WXJ|A Chain A, Crystal Structure Of Tryptophan Synthase A-Subunit With
Indole-3- Propanol Phosphate From Thermus Thermophilus
Hb8
Length = 271
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 148/257 (57%), Gaps = 3/257 (1%)
Query: 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQ 111
E F + + +G+ ALIPY+TAG P +A++ + +D++E+G+PYSDPL DGPVIQ
Sbjct: 5 EAFAKARSEGRAALIPYLTAGFPSREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQ 63
Query: 112 AAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGL 171
A+ +L +G + L +++EV P+ L TY NP+L G + F + G G+
Sbjct: 64 RASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGV 123
Query: 172 VVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGAR 231
++PD+P +E L + A + +E V PT+ R+ +V + GFVY VS GVTG R
Sbjct: 124 ILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMR 183
Query: 232 ASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQS 291
+ V+ L+R IK + PVAVGFG+S ADGV+VGSA+V+ L E +S
Sbjct: 184 ERLPEEVKDLVRRIKARTALPVAVGFGVSG--KATAAQAAVADGVVVGSALVRALEEGRS 241
Query: 292 PEEGLKELEKFAKSLKS 308
L+E+ + + L++
Sbjct: 242 LAPLLQEIRQGLQRLEA 258
>pdb|3VND|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|C Chain C, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|D Chain D, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|E Chain E, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|F Chain F, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|G Chain G, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|H Chain H, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
Length = 267
Score = 164 bits (415), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 145/259 (55%), Gaps = 4/259 (1%)
Query: 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA 113
F LK Q K A +P++T GDP + + ++ L G+D +ELG P+SDPLADGPVIQ A
Sbjct: 9 FAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGA 68
Query: 114 ATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLV 172
RSLA GT + ++ +V Q PI L Y N + G+D F + + G+ ++
Sbjct: 69 NLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVL 128
Query: 173 VPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARA 232
+ DVP+EE+ K A + I + P D +K + E EG+ YL+S GVTG +
Sbjct: 129 IADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYLLSRAGVTGTES 188
Query: 233 SISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSP 292
++ +L ++ E + P +GFGI++PE V+ GA G I GSA+VK++ EA
Sbjct: 189 KAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVVKII-EAHQH 247
Query: 293 EEG--LKELEKFAKSLKSA 309
+E L +L +F ++K+A
Sbjct: 248 DEATLLAKLAEFTTAMKAA 266
>pdb|1TTP|A Chain A, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Cesium, Room Temperature
pdb|1TTQ|A Chain A, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Potassium At Room Temperature
pdb|1UBS|A Chain A, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys
87->thr In The B Subunit And In The Presence Of Ligand
L-Serine
pdb|2TYS|A Chain A, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
pdb|2TRS|A Chain A, Crystal Structures Of Mutant (betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-induced Conformational Changes
pdb|1A50|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5- Fluoroindole Propanol Phosphate
pdb|1A5S|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5- Fluoroindole Propanol Phosphate And
L-Ser Bound As Amino Acrylate To The Beta Site
pdb|2WSY|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
pdb|1BKS|A Chain A, Tryptophan Synthase (E.C.4.2.1.20) From Salmonella
Typhimurium
pdb|1C9D|A Chain A, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxy-4- Fluorophenylthio)-Butylphosphonic Acid
pdb|1CW2|A Chain A, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylsulfinyl)- Butylphosphonic Acid
pdb|1CX9|A Chain A, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Aminophenylthio)- Butylphosphonic Acid
pdb|1C29|A Chain A, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylthio)-1- Butenylphosphonic Acid
pdb|1C8V|A Chain A, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylthio)- Butylphosphonic Acid
pdb|1QOQ|A Chain A, Crystal Structure Of Wild-type Tryptophan Synthase
Complexed With Indole Glycerol Phosphate
pdb|1FUY|A Chain A, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF
TRYPTOPHAN Synthase Complexed With
5-Fluoro-Indole-Propanol Phosphate
pdb|1K3U|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]aspartic Acid
pdb|1K7X|A Chain A, Crystal Structure Of The Beta-Ser178pro Mutant Of
Tryptophan Synthase
pdb|1K8Y|A Chain A, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
D,L-Alpha-Glycerol-3-Phosphate
pdb|1K8Z|A Chain A, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
N-[1h-Indol-3-Yl-Acetyl]glycine Acid
pdb|1K7E|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]glycine Acid
pdb|1K7F|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]valine Acid
pdb|1KFJ|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With L-Serine
pdb|1TJP|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 1-
[(2-Hydroxylphenyl)amino]3-Glycerolphosphate
pdb|2CLE|A Chain A, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6)-
Lowf6 Complex
pdb|2CLH|A Chain A, Tryptophan Synthase In Complex With (Naphthalene-2'-
Sulfonyl)-2-Amino-1-Ethylphosphate (F19)
pdb|2CLI|A Chain A, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzenesulfonyl)-2-Amino-1-
Ethylphosphate (F9)
pdb|2CLL|A Chain A, Tryptophan Synthase (External Aldimine State) In Complex
With N-(4'-Trifluoromethoxybenzenesulfonyl)-2-Amino-1-
Ethylphosphate (F9)
pdb|2CLM|A Chain A, Tryptophan Synthase (External Aldimine State) In Complex
With N-(4'-Trifluoromethoxybenzoyl)-2-Amino-1-
Ethylphosphate (F6f)
pdb|2CLO|A Chain A, Tryptophan Synthase (External Aldimine State) In Complex
With (Naphthalene-2'-Sulfonyl)-2-Amino-1-Ethylphosphate
(F19)
pdb|2CLF|A Chain A, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6) -
Highf6 Complex
pdb|2J9X|A Chain A, Tryptophan Synthase In Complex With Gp,
Alpha-D,L-Glycerol- Phosphate, Cs, Ph6.5 - Alpha
Aminoacrylate Form - (Gp)e(A- A)
pdb|2TSY|A Chain A, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
pdb|2RH9|A Chain A, Tryptophan Synthase Complexed With Igp, Internal Aldimine,
Ph 9.0
pdb|2RHG|A Chain A, Tryptophan Synthase Complexed With Igp, Ph 7.0, Internal
Aldimine
pdb|2J9Y|A Chain A, Tryptophan Synthase Q114n Mutant In Complex With Compound
Ii
Length = 268
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 144/260 (55%), Gaps = 6/260 (2%)
Query: 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA 113
F +L + + A +P++T GDP + + + + L G+D +ELGVP+SDPLADGP IQ A
Sbjct: 8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNA 67
Query: 114 ATRSLARGT---NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRG 170
R+ A G +L++++E P + PI L Y N + G+D F + +G+
Sbjct: 68 NLRAFAAGVTPAQCFEMLALIREKHP--TIPIGLLMYANLVFNNGIDAFYARCEQVGVDS 125
Query: 171 LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA 230
++V DVP+EE+ ++ A+++ I + P D ++ + G+ YL+S GVTGA
Sbjct: 126 VLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGA 185
Query: 231 RASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA- 289
+ + L+ ++KE P GFGIS PE V GA G I GSA+VK++ +
Sbjct: 186 ENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNL 245
Query: 290 QSPEEGLKELEKFAKSLKSA 309
SP++ L EL F ++K+A
Sbjct: 246 ASPKQMLAELRSFVSAMKAA 265
>pdb|3PR2|A Chain A, Tryptophan Synthase Indoline Quinonoid Structure With F9
Inhibitor In Alpha Site
Length = 266
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 144/260 (55%), Gaps = 6/260 (2%)
Query: 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA 113
F +L + + A +P++T GDP + + + + L G+D +ELGVP+SDPLADGP IQ A
Sbjct: 7 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNA 66
Query: 114 ATRSLARGT---NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRG 170
R+ A G +L++++E P + PI L Y N + G+D F + +G+
Sbjct: 67 NLRAFAAGVTPAQCFEMLALIREKHP--TIPIGLLMYANLVFNNGIDAFYARCEQVGVDS 124
Query: 171 LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA 230
++V DVP+EE+ ++ A+++ I + P D ++ + G+ YL+S GVTGA
Sbjct: 125 VLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGA 184
Query: 231 RASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA- 289
+ + L+ ++KE P GFGIS PE V GA G I GSA+VK++ +
Sbjct: 185 ENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNL 244
Query: 290 QSPEEGLKELEKFAKSLKSA 309
SP++ L EL F ++K+A
Sbjct: 245 ASPKQMLAELRSFVSAMKAA 264
>pdb|1QOP|A Chain A, Crystal Structure Of Wild-type Tryptophan Synthase
Complexed With Indole Propanol Phosphate
pdb|1K8X|A Chain A, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium
pdb|1WBJ|A Chain A, Wildtype Tryptophan Synthase Complexed With Glycerol
Phosphate
pdb|2CLK|A Chain A, Tryptophan Synthase In Complex With D-Glyceraldehyde 3-
Phosphate (G3p)
pdb|2J9Z|A Chain A, Tryptophan Synthase T110 Mutant Complex
pdb|3CEP|A Chain A, Structure Of A Tryptophan Synthase Quinonoid Intermediate
Length = 268
Score = 160 bits (406), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 144/260 (55%), Gaps = 6/260 (2%)
Query: 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA 113
F +L + + A +P++T GDP + + + + L G+D +ELGVP+SDPLADGP IQ A
Sbjct: 8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNA 67
Query: 114 ATRSLARGT---NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRG 170
R+ A G +L++++E P + PI L Y N + G+D F + +G+
Sbjct: 68 NLRAFAAGVTPAQCFEMLAIIREKHP--TIPIGLLMYANLVFNNGIDAFYARCEQVGVDS 125
Query: 171 LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA 230
++V DVP+EE+ ++ A+++ I + P D ++ + G+ YL+S GVTGA
Sbjct: 126 VLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGA 185
Query: 231 RASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA- 289
+ + L+ ++KE P GFGIS PE V GA G I GSA+VK++ +
Sbjct: 186 ENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNL 245
Query: 290 QSPEEGLKELEKFAKSLKSA 309
SP++ L EL F ++K+A
Sbjct: 246 ASPKQMLAELRSFVSAMKAA 265
>pdb|1KFB|A Chain A, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With Indole
Glycerol Phosphate
pdb|1KFK|A Chain A, Crystal Structure Of Tryptophan Synthase From Salmonella
Typhimurium
Length = 268
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 143/260 (55%), Gaps = 6/260 (2%)
Query: 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA 113
F +L + + A +P++T GDP + + + + L G+D +ELGVP+SDPLADGP IQ A
Sbjct: 8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNA 67
Query: 114 ATRSLARGT---NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRG 170
R+ A G +L++++E P + PI L Y N + G+D F + +G+
Sbjct: 68 NLRAFAAGVTPAQCFEMLALIREKHP--TIPIGLLMYANLVFNNGIDAFYARCEQVGVDS 125
Query: 171 LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA 230
++V DVP+EE+ ++ A+++ I + P D ++ + G+ YL+S GV GA
Sbjct: 126 VLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVVGA 185
Query: 231 RASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA- 289
+ + L+ ++KE P GFGIS PE V GA G I GSA+VK++ +
Sbjct: 186 ENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNL 245
Query: 290 QSPEEGLKELEKFAKSLKSA 309
SP++ L EL F ++K+A
Sbjct: 246 ASPKQMLAELRSFVSAMKAA 265
>pdb|1A5A|A Chain A, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant
(Alphad60n) Tryptophan Synthase Alpha2beta2 Complex
Reveals The Correct Orientation Of Active Site Alpha Glu
49
pdb|1A5B|A Chain A, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant (Alpha
D60n) Tryptophan Synthase Alpha2beta2 Complex Reveals
The Correct Orientation Of Active Site Alpha Glu 49
pdb|1BEU|A Chain A, Trp Synthase (D60n-Ipp-Ser) With K+
Length = 268
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 144/260 (55%), Gaps = 6/260 (2%)
Query: 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA 113
F +L + + A +P++T GDP + + + + L G+D +ELGVP+SDPLA+GP IQ A
Sbjct: 8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLANGPTIQNA 67
Query: 114 ATRSLARGT---NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRG 170
R+ A G +L++++E P + PI L Y N + G+D F + +G+
Sbjct: 68 NLRAFAAGVTPAQCFEMLALIREKHP--TIPIGLLMYANLVFNNGIDAFYARCEQVGVDS 125
Query: 171 LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA 230
++V DVP+EE+ ++ A+++ I + P D ++ + G+ YL+S GVTGA
Sbjct: 126 VLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGA 185
Query: 231 RASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA- 289
+ + L+ ++KE P GFGIS PE V GA G I GSA+VK++ +
Sbjct: 186 ENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNL 245
Query: 290 QSPEEGLKELEKFAKSLKSA 309
SP++ L EL F ++K+A
Sbjct: 246 ASPKQMLAELRSFVSAMKAA 265
>pdb|1KFC|A Chain A, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With Indole
Propanol Phosphate
pdb|1KFE|A Chain A, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With L-ser Bound To
The Beta Site
Length = 268
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 143/260 (55%), Gaps = 6/260 (2%)
Query: 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA 113
F +L + + A +P++T GDP + + + + L G+D +ELGVP+SDPLADGP IQ A
Sbjct: 8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNA 67
Query: 114 ATRSLARGT---NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRG 170
R+ A G +L++++E P + PI L Y N + G+D F + +G+
Sbjct: 68 NLRAFAAGVTPAQCFEMLAIIREKHP--TIPIGLLMYANLVFNNGIDAFYARCEQVGVDS 125
Query: 171 LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA 230
++V DVP+EE+ ++ A+++ I + P D ++ + G+ YL+S GV GA
Sbjct: 126 VLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVVGA 185
Query: 231 RASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA- 289
+ + L+ ++KE P GFGIS PE V GA G I GSA+VK++ +
Sbjct: 186 ENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNL 245
Query: 290 QSPEEGLKELEKFAKSLKSA 309
SP++ L EL F ++K+A
Sbjct: 246 ASPKQMLAELRSFVSAMKAA 265
>pdb|1XC4|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Alpha-Subunits From Escherichia Coli
pdb|1XC4|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Alpha-Subunits From Escherichia Coli
Length = 268
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 148/260 (56%), Gaps = 6/260 (2%)
Query: 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA 113
F +LK++ + A +P++T GDP + + + + L G+D +ELG+P+SDPLADGP IQ A
Sbjct: 8 FAQLKERKEGAFVPFVTLGDPGIEQSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNA 67
Query: 114 ATRSLARGT---NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRG 170
R+ A G +L++++E P + PI L Y N + +G+D F + +G+
Sbjct: 68 TLRAFAAGVTPAQCFEMLALIREKHP--TIPIGLLMYANLVFNKGIDEFYARCEKVGVDS 125
Query: 171 LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA 230
++V DVP+EE+ ++ A+++ + + P D ++ I G+ YL+S GVTGA
Sbjct: 126 VLVADVPVEESAPFRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGA 185
Query: 231 RASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-A 289
+ + L+ ++KE + P GFGIS P+ V+ GA G I GSA+VK++ +
Sbjct: 186 ENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHI 245
Query: 290 QSPEEGLKELEKFAKSLKSA 309
PE+ L L+ F + +K+A
Sbjct: 246 NEPEKMLAALKVFVQPMKAA 265
>pdb|3NAV|A Chain A, Crystal Structure Of An Alpha Subunit Of Tryptophan
Synthase From Vibrio Cholerae O1 Biovar El Tor Str.
N16961
pdb|3NAV|B Chain B, Crystal Structure Of An Alpha Subunit Of Tryptophan
Synthase From Vibrio Cholerae O1 Biovar El Tor Str.
N16961
Length = 271
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 142/258 (55%), Gaps = 2/258 (0%)
Query: 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA 113
F RL + A +P++T GDP+ + ++ L G+D +ELG+P+SDPLADGP IQ A
Sbjct: 11 FQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGA 70
Query: 114 ATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLV 172
R+LA T + ++ ++ + PI L Y N + RG+D+F + G+ ++
Sbjct: 71 NLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVL 130
Query: 173 VPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARA 232
+ DVP E++ A K I+ + PT + ++A+ + +G+ YL+S GVTGA
Sbjct: 131 IADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRAGVTGAET 190
Query: 233 SISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQS 291
+ V LL +++ P +GFGIS+P V+Q GA G I GSA+VK++ +
Sbjct: 191 KANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGSAVVKIIETHLDN 250
Query: 292 PEEGLKELEKFAKSLKSA 309
P + L EL F +++K A
Sbjct: 251 PAKQLTELANFTQAMKKA 268
>pdb|1V7Y|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli At Room Temperature
pdb|1V7Y|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli At Room Temperature
pdb|1WQ5|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli
pdb|1WQ5|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli
Length = 268
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 144/258 (55%), Gaps = 2/258 (0%)
Query: 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA 113
F +LK++ + A +P++T GDP + + + + L G+D +ELG+P+SDPLADGP IQ A
Sbjct: 8 FAQLKERKEGAFVPFVTLGDPGIEQSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNA 67
Query: 114 ATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLV 172
R+ A G ML + + + PI L Y N + +G+D F + +G+ ++
Sbjct: 68 TLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVFNKGIDEFYAQCEKVGVDSVL 127
Query: 173 VPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARA 232
V DVP+EE+ ++ A+++ + + P D ++ I G+ YL+S GVTGA
Sbjct: 128 VADVPVEESAPFRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAEN 187
Query: 233 SISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQS 291
+ + L+ ++KE + P GFGIS P+ V+ GA G I GSA+VK++ +
Sbjct: 188 RAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINE 247
Query: 292 PEEGLKELEKFAKSLKSA 309
PE+ L L+ F + +K+A
Sbjct: 248 PEKMLAALKVFVQPMKAA 265
>pdb|3THA|A Chain A, Tryptophan Synthase Subunit Alpha From Campylobacter
Jejuni.
pdb|3THA|B Chain B, Tryptophan Synthase Subunit Alpha From Campylobacter
Jejuni
Length = 252
Score = 157 bits (398), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 140/237 (59%), Gaps = 5/237 (2%)
Query: 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA 113
F + K+ A + Y G P+L T+ L+ LD DI+ELGV YSDP+ADG +I A
Sbjct: 7 FRKFYKEN--ANVAYTVLGYPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADA 64
Query: 114 ATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV 173
A +L +G + +++ +L + + + + YYN I G++ F+ + +GI L+V
Sbjct: 65 AKIALDQGVDIHSVFELLARIKTKKA--LVFXVYYNLIFSYGLEKFVKKAKSLGICALIV 122
Query: 174 PDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARAS 233
P++ EE++ L KE + I L+ + TTP +R+K +V+ ++GF+YL++SIG+TG ++
Sbjct: 123 PELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYLLASIGITGTKSV 182
Query: 234 ISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQ 290
+Q ++EI+ + P+ VGFGI + V++ ADGVIVG+++VK +
Sbjct: 183 EEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRXRKV-ADGVIVGTSIVKCFKQGN 238
>pdb|1XCF|A Chain A, Crystal Structure Of P28lY173F TRYPTOPHAN SYNTHASE ALPHA-
Subunits From Escherichia Coli
pdb|1XCF|B Chain B, Crystal Structure Of P28lY173F TRYPTOPHAN SYNTHASE ALPHA-
Subunits From Escherichia Coli
Length = 268
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 147/260 (56%), Gaps = 6/260 (2%)
Query: 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA 113
F +LK++ + A +P++T GD + + + + L G+D +ELG+P+SDPLADGP IQ A
Sbjct: 8 FAQLKERKEGAFVPFVTLGDLGIEQSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNA 67
Query: 114 ATRSLARGT---NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRG 170
R+ A G +L++++E P + PI L Y N + +G+D F + +G+
Sbjct: 68 TLRAFAAGVTPAQCFEMLAIIREKHP--TIPIGLLMYANLVFNKGIDEFYARCEKVGVDS 125
Query: 171 LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA 230
++V DVP+EE+ ++ A+++ + + P D ++ I GF YL+S GVTGA
Sbjct: 126 VLVADVPVEESAPFRQAALRHNVAPIFICPPNADDDLLRQIASYGRGFTYLLSRAGVTGA 185
Query: 231 RASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-A 289
+ + L+ ++KE + P GFGIS P+ V+ GA G I GSA+VK++ +
Sbjct: 186 ENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHI 245
Query: 290 QSPEEGLKELEKFAKSLKSA 309
PE+ L L+ F + +K+A
Sbjct: 246 NEPEKMLAALKVFVQPMKAA 265
>pdb|2H6R|A Chain A, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|B Chain B, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|C Chain C, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|D Chain D, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|E Chain E, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|F Chain F, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|G Chain G, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|H Chain H, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
Length = 219
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 238 VQTLLREIKE-SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL 296
V+ +R +KE + V G GISK E V+ GA+GV++ S +VK A++ EE +
Sbjct: 157 VEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVK----AKNVEEAI 212
Query: 297 KELEKF 302
+EL KF
Sbjct: 213 RELIKF 218
>pdb|1ZNN|A Chain A, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|B Chain B, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|C Chain C, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|D Chain D, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|E Chain E, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|F Chain F, Structure Of The Synthase Subunit Of Plp Synthase
Length = 325
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 15/72 (20%)
Query: 241 LLREIKESSTKPVAVGF---GISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLK 297
+LREIK PV V F G++ P + GADGV VGS + K +++P
Sbjct: 226 VLREIKRLGRLPV-VNFAAGGVTTPADAALMMHLGADGVFVGSGIFK----SENP----- 275
Query: 298 ELEKFAKSLKSA 309
EK+A+++ A
Sbjct: 276 --EKYARAIVEA 285
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 3 ALQATTNFVHLKNPHAHYLPRLPCHKSTLSLKRFTPMAALTASPTVGLAETFTRLKKQGK 62
A++ NF L LP K ++KR T PT G ET LK +G
Sbjct: 42 AMEGKLNFEQSLRKRVSLLKDLPIEKVEKAIKRIT--------PTEGAEETIKELKNRGY 93
Query: 63 VALI 66
V +
Sbjct: 94 VVAV 97
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 3 ALQATTNFVHLKNPHAHYLPRLPCHKSTLSLKRFTPMAALTASPTVGLAETFTRLKKQGK 62
A++ NF L LP K ++KR T PT G ET LK +G
Sbjct: 42 AMEGKLNFEQSLRKRVSLLKDLPIEKVEKAIKRIT--------PTEGAEETIKELKNRGY 93
Query: 63 VALI 66
V +
Sbjct: 94 VVAV 97
>pdb|3KG9|A Chain A, Dehydratase Domain From Curk Module Of Curacin Polyketide
Synthase
pdb|3KG9|B Chain B, Dehydratase Domain From Curk Module Of Curacin Polyketide
Synthase
Length = 296
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 163 VRDIGI-RGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221
V D+ I RGLV+P+ ++ +++ N +L +F+T + +EG ++L
Sbjct: 75 VSDVTIVRGLVIPETDIKTVQTVISTLENNSYKLEIFSTSEGDNQQANQWTLHAEGKIFL 134
Query: 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGAD 274
S+ T +A I L + + ++ + + +H QQ G D
Sbjct: 135 DST---TNTKAKID------LEQYQRECSQVIDI------QQHYQQFKSRGID 172
>pdb|2HTM|A Chain A, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
pdb|2HTM|B Chain B, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
pdb|2HTM|C Chain C, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
pdb|2HTM|D Chain D, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
Length = 268
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 246 KESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSP 292
+++S PV V G+ P H +V G D V+V +A + EAQ P
Sbjct: 174 EKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTA----IAEAQDP 216
>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFQ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFS|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFZ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFZ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AG1|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|B Chain B, Human Chymase - Fynomer Complex
Length = 226
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 237 HVQTLLREIKESSTKPVAVG-------FGISKPEHVQQVAGWGADGVI 277
H +L ++KE ++ +AVG F P + +VAGWG GV+
Sbjct: 87 HHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVL 134
>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9
Angstroms Resolution
Length = 226
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 237 HVQTLLREIKESSTKPVAVG-------FGISKPEHVQQVAGWGADGVI 277
H +L ++KE ++ +AVG F P + +VAGWG GV+
Sbjct: 87 HHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVL 134
>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small
Molecule Inhibitor
Length = 226
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 237 HVQTLLREIKESSTKPVAVG-------FGISKPEHVQQVAGWGADGVI 277
H +L ++KE ++ +AVG F P + +VAGWG GV+
Sbjct: 87 HHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVL 134
>pdb|1NN6|A Chain A, Human Pro-Chymase
Length = 228
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 237 HVQTLLREIKESSTKPVAVG-------FGISKPEHVQQVAGWGADGVI 277
H +L ++KE ++ +AVG F P + +VAGWG GV+
Sbjct: 89 HHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVL 136
>pdb|1VZW|A Chain A, Crystal Structure Of The Bifunctional Protein Pria
pdb|2VEP|A Chain A, Crystal Structure Of The Full Length Bifunctional Enzyme
Pria
Length = 244
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW---GADGV 276
Y+V+ I G ++ G LL+ + ++ +PV G+S + ++ +AG G +G
Sbjct: 163 YVVTDIAKDG---TLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGA 219
Query: 277 IVGSAM 282
IVG A+
Sbjct: 220 IVGKAL 225
>pdb|2X30|A Chain A, Crystal Structure Of The R139n Mutant Of A Bifunctional
Enzyme Pria
Length = 240
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW---GADGV 276
Y+V+ I G ++ G LL+ + ++ +PV G+S + ++ +AG G +G
Sbjct: 163 YVVTDIAKDG---TLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGA 219
Query: 277 IVGSAM 282
IVG A+
Sbjct: 220 IVGKAL 225
>pdb|3TC6|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or63
Length = 258
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 235 SGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEE 294
+G +TL R+I S + P+A+ I K + GAD V++ +VK+L E +
Sbjct: 90 NGSYETL-RKIASSVSIPIAMSDAIVKESQIDDAYNLGADTVVL---IVKILTERE---- 141
Query: 295 GLKELEKFAKS 305
L+ L ++A+S
Sbjct: 142 -LESLLEYARS 151
>pdb|2VWS|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWT|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
Length = 267
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 238 VQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVG 279
++T +R I+ + A GF P+ QQ WGA+ V VG
Sbjct: 199 IETSIRRIRAAGK---AAGFLAVAPDMAQQCLAWGANFVAVG 237
>pdb|2GSN|A Chain A, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE
pdb|2GSN|B Chain B, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE
pdb|2GSO|A Chain A, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE IN COMPLEX WITH
VANADATE
pdb|2GSO|B Chain B, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE IN COMPLEX WITH
VANADATE
pdb|2GSU|A Chain A, Structure Of Xac Nucleotide
Pyrophosphatase/phosphodiesterase In Complex With Amp
pdb|2GSU|B Chain B, Structure Of Xac Nucleotide
Pyrophosphatase/phosphodiesterase In Complex With Amp
pdb|2RH6|A Chain A, Structure Of Xac Npp For Evaluation Of Refinement
Methodology
pdb|2RH6|B Chain B, Structure Of Xac Npp For Evaluation Of Refinement
Methodology
Length = 393
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 227 VTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVG 279
VTG R G V +R+ P GF +SK E V WG + V VG
Sbjct: 59 VTGLRPDHHGIVHNSMRD-------PTLGGFWLSKSEAVGDARWWGGEPVWVG 104
>pdb|3T8K|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
pdb|3T8K|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
Length = 186
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 59 KQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPY 100
K+G P G D++ T E K+ G+DI L PY
Sbjct: 73 KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPY 114
>pdb|2ISS|A Chain A, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|B Chain B, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|C Chain C, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
Length = 313
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 241 LLREIKESSTKPVAVGF---GISKPEHVQQVAGWGADGVIVGSAMVK 284
LLRE+K PV V F G++ P + GADGV VGS + K
Sbjct: 216 LLREVKRLGRLPV-VNFAAGGVATPADAALMMMLGADGVFVGSGIFK 261
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 276 VIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSALP 311
+IVGSA+ L E + PE GLK ++K ++ + +P
Sbjct: 161 IIVGSALCAL--EQRDPELGLKSVQKLLDAVDTYIP 194
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 276 VIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSALP 311
+IVGSA+ L E + PE GLK ++K ++ + +P
Sbjct: 172 IIVGSALCAL--EQRDPELGLKSVQKLLDAVDTYIP 205
>pdb|4DBE|A Chain A, Crystal Structure Of Orotidine 5'-monophosphate
Decarboxylase From Sulfolobus Solfataricus Complexed
With Inhibitor Bmp
pdb|4DBE|B Chain B, Crystal Structure Of Orotidine 5'-monophosphate
Decarboxylase From Sulfolobus Solfataricus Complexed
With Inhibitor Bmp
pdb|4DBD|A Chain A, Crystal Structure Of Orotidine 5'-monophosphate
Decarboxylase From Sulfolobus Solfataricus
Length = 222
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 198 FTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGF 257
F D +K ++A+ +YLV+ + G + +++ ++REI P +
Sbjct: 87 FIGVKGSLDELKRYLDANSKNLYLVAVMSHEGWSTLFADYIKNVIREI-----SPKGIVV 141
Query: 258 GISKPEHVQQ 267
G +K +H+ Q
Sbjct: 142 GGTKLDHITQ 151
>pdb|2NV1|A Chain A, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|B Chain B, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|C Chain C, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|D Chain D, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|E Chain E, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|F Chain F, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
Length = 305
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 241 LLREIKESSTKPVAVGF---GISKPEHVQQVAGWGADGVIVGSAMVK 284
LL +IK+ PV V F G++ P + GADGV VGS + K
Sbjct: 198 LLLQIKKDGKLPV-VNFAAGGVATPADAALMMQLGADGVFVGSGIFK 243
>pdb|2NV2|A Chain A, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|C Chain C, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|E Chain E, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|G Chain G, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|I Chain I, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|K Chain K, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|M Chain M, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|O Chain O, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|Q Chain Q, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|S Chain S, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|U Chain U, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|W Chain W, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 294
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 241 LLREIKESSTKPVAVGF---GISKPEHVQQVAGWGADGVIVGSAMVK 284
LL +IK+ PV V F G++ P + GADGV VGS + K
Sbjct: 195 LLLQIKKDGKLPV-VNFAAGGVATPADAALMMQLGADGVFVGSGIFK 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,482,465
Number of Sequences: 62578
Number of extensions: 328223
Number of successful extensions: 1214
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1143
Number of HSP's gapped (non-prelim): 85
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)