Query 021527
Match_columns 311
No_of_seqs 186 out of 1420
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:42:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0159 TrpA Tryptophan syntha 100.0 3.2E-76 7E-81 542.5 32.6 262 47-310 1-263 (265)
2 CHL00200 trpA tryptophan synth 100.0 2.5E-74 5.5E-79 535.1 33.2 261 47-310 1-261 (263)
3 PF00290 Trp_syntA: Tryptophan 100.0 7.6E-75 1.6E-79 536.3 29.0 257 54-311 1-259 (259)
4 PLN02591 tryptophan synthase 100.0 7.8E-73 1.7E-77 521.2 32.0 250 62-311 1-250 (250)
5 KOG4175 Tryptophan synthase al 100.0 8.8E-72 1.9E-76 488.5 27.4 262 48-310 3-266 (268)
6 PRK13111 trpA tryptophan synth 100.0 7.7E-70 1.7E-74 504.0 32.5 254 53-310 2-256 (258)
7 TIGR00262 trpA tryptophan synt 100.0 3E-68 6.4E-73 493.3 31.5 253 55-307 2-256 (256)
8 cd04724 Tryptophan_synthase_al 100.0 4.8E-59 1E-63 428.5 31.0 242 64-307 1-242 (242)
9 PRK13125 trpA tryptophan synth 100.0 8.3E-51 1.8E-55 374.1 30.0 235 61-310 2-240 (244)
10 TIGR01163 rpe ribulose-phospha 99.9 2.9E-23 6.2E-28 185.2 20.4 183 74-284 8-198 (210)
11 PRK05581 ribulose-phosphate 3- 99.9 1.4E-21 3E-26 175.8 21.7 184 73-284 12-203 (220)
12 cd00429 RPE Ribulose-5-phospha 99.9 1.6E-20 3.5E-25 167.2 20.0 183 75-285 10-200 (211)
13 PRK01130 N-acetylmannosamine-6 99.9 4.2E-20 9E-25 167.3 20.7 183 68-285 12-208 (221)
14 PF03437 BtpA: BtpA family; I 99.8 7.8E-19 1.7E-23 162.3 21.0 213 62-307 2-253 (254)
15 cd04726 KGPDC_HPS 3-Keto-L-gul 99.8 6.1E-18 1.3E-22 150.3 20.1 181 72-284 8-191 (202)
16 cd04729 NanE N-acetylmannosami 99.8 1.3E-18 2.9E-23 157.4 16.0 187 94-285 13-212 (219)
17 PRK08883 ribulose-phosphate 3- 99.8 8.7E-18 1.9E-22 152.8 20.5 197 76-303 11-215 (220)
18 cd00331 IGPS Indole-3-glycerol 99.8 2.1E-17 4.5E-22 149.2 21.0 190 61-286 9-208 (217)
19 PRK04302 triosephosphate isome 99.8 9.6E-18 2.1E-22 152.5 18.8 153 130-285 47-208 (223)
20 COG0434 SgcQ Predicted TIM-bar 99.8 4.6E-17 1E-21 147.1 21.2 215 62-309 7-260 (263)
21 TIGR00259 thylakoid_BtpA membr 99.8 9.8E-17 2.1E-21 148.5 22.9 216 63-311 2-257 (257)
22 PRK08745 ribulose-phosphate 3- 99.7 2E-15 4.3E-20 137.6 21.4 205 65-302 6-218 (223)
23 PLN02334 ribulose-phosphate 3- 99.7 5.2E-15 1.1E-19 135.0 22.7 184 75-284 18-207 (229)
24 COG0036 Rpe Pentose-5-phosphat 99.7 2.1E-15 4.5E-20 136.0 19.1 192 65-285 6-203 (220)
25 cd04730 NPD_like 2-Nitropropan 99.7 3.5E-15 7.6E-20 135.6 21.0 156 122-288 36-194 (236)
26 PRK08005 epimerase; Validated 99.7 5.3E-15 1.2E-19 133.6 20.6 183 75-284 11-196 (210)
27 TIGR01769 GGGP geranylgeranylg 99.7 4.3E-15 9.3E-20 133.7 18.9 172 70-279 3-205 (205)
28 PRK04169 geranylgeranylglycery 99.7 1.1E-14 2.4E-19 133.3 21.2 181 61-284 6-218 (232)
29 PF04131 NanE: Putative N-acet 99.7 1.1E-14 2.3E-19 128.5 19.6 169 81-286 3-180 (192)
30 PRK08091 ribulose-phosphate 3- 99.7 2.4E-14 5.3E-19 130.6 21.2 194 62-284 12-212 (228)
31 PRK07028 bifunctional hexulose 99.6 1.4E-14 3.1E-19 143.5 20.8 185 69-284 8-195 (430)
32 PRK09722 allulose-6-phosphate 99.6 4.2E-14 9E-19 129.3 20.9 208 65-305 5-221 (229)
33 TIGR01768 GGGP-family geranylg 99.6 2.6E-14 5.7E-19 129.9 18.4 178 68-285 2-214 (223)
34 PF01884 PcrB: PcrB family; I 99.6 7.1E-14 1.5E-18 127.5 20.0 181 61-285 6-217 (230)
35 PRK14057 epimerase; Provisiona 99.6 9.6E-14 2.1E-18 128.3 21.0 193 63-284 20-226 (254)
36 PTZ00170 D-ribulose-5-phosphat 99.6 7.4E-14 1.6E-18 127.7 19.2 199 77-304 19-222 (228)
37 COG3010 NanE Putative N-acetyl 99.6 6.9E-13 1.5E-17 117.9 23.4 193 70-308 24-228 (229)
38 COG1646 Predicted phosphate-bi 99.6 2.2E-13 4.8E-18 123.2 19.3 177 68-285 18-226 (240)
39 PF00834 Ribul_P_3_epim: Ribul 99.6 3.6E-15 7.8E-20 133.9 7.0 182 76-284 11-199 (201)
40 cd04732 HisA HisA. Phosphorib 99.6 6E-13 1.3E-17 120.9 21.4 179 70-284 27-224 (234)
41 KOG3111 D-ribulose-5-phosphate 99.6 3.8E-13 8.2E-18 118.4 17.9 197 74-301 14-215 (224)
42 TIGR03128 RuMP_HxlA 3-hexulose 99.5 5.2E-13 1.1E-17 119.3 18.7 181 71-284 6-191 (206)
43 cd04722 TIM_phosphate_binding 99.5 6.8E-13 1.5E-17 114.6 18.2 184 77-280 12-200 (200)
44 cd02812 PcrB_like PcrB_like pr 99.5 3.3E-13 7.1E-18 122.6 16.4 174 69-285 3-210 (219)
45 TIGR00007 phosphoribosylformim 99.5 1.5E-12 3.2E-17 118.4 20.0 174 80-284 31-223 (230)
46 PRK13307 bifunctional formalde 99.5 3.5E-12 7.6E-17 124.8 22.4 181 70-284 178-363 (391)
47 PRK00043 thiE thiamine-phospha 99.5 6.9E-12 1.5E-16 111.9 19.4 170 77-284 21-193 (212)
48 PRK00278 trpC indole-3-glycero 99.5 2E-11 4.2E-16 113.8 23.1 189 60-285 47-246 (260)
49 PRK13585 1-(5-phosphoribosyl)- 99.5 5.4E-12 1.2E-16 115.5 18.1 176 80-285 35-228 (241)
50 COG0352 ThiE Thiamine monophos 99.4 3.2E-11 6.9E-16 109.1 21.5 182 64-284 5-191 (211)
51 PRK06512 thiamine-phosphate py 99.4 8E-11 1.7E-15 107.3 23.4 176 68-284 16-197 (221)
52 COG0106 HisA Phosphoribosylfor 99.4 2.6E-11 5.7E-16 110.9 19.4 184 70-285 19-227 (241)
53 cd04723 HisA_HisF Phosphoribos 99.4 5.5E-11 1.2E-15 109.0 20.3 179 70-285 33-224 (233)
54 PRK13587 1-(5-phosphoribosyl)- 99.4 7.9E-11 1.7E-15 108.2 19.6 174 80-284 34-226 (234)
55 PRK00748 1-(5-phosphoribosyl)- 99.4 9E-11 2E-15 106.6 19.9 175 80-285 33-226 (233)
56 cd00564 TMP_TenI Thiamine mono 99.4 1.3E-10 2.9E-15 101.4 20.0 170 77-285 12-184 (196)
57 cd04727 pdxS PdxS is a subunit 99.4 4.1E-11 8.9E-16 111.7 17.1 178 79-284 17-230 (283)
58 PRK02615 thiamine-phosphate py 99.4 1.2E-10 2.7E-15 112.5 21.0 168 77-284 157-327 (347)
59 COG0269 SgbH 3-hexulose-6-phos 99.3 3E-10 6.6E-15 102.2 20.3 201 70-308 9-214 (217)
60 cd04731 HisF The cyclase subun 99.3 4.1E-10 8.9E-15 103.3 21.5 179 78-285 28-229 (243)
61 TIGR00343 pyridoxal 5'-phospha 99.3 1.4E-10 3E-15 108.3 16.9 180 79-284 19-233 (287)
62 PF02581 TMP-TENI: Thiamine mo 99.3 2.7E-10 5.8E-15 100.3 18.0 175 69-282 4-180 (180)
63 PRK02083 imidazole glycerol ph 99.3 5E-10 1.1E-14 103.5 20.6 177 80-285 33-233 (253)
64 TIGR03572 WbuZ glycosyl amidat 99.3 5.6E-10 1.2E-14 101.8 20.0 177 78-282 31-230 (232)
65 TIGR00735 hisF imidazoleglycer 99.3 1.3E-09 2.9E-14 101.0 21.8 175 80-284 33-234 (254)
66 PRK07695 transcriptional regul 99.3 2.9E-09 6.4E-14 95.1 23.2 172 68-284 6-182 (201)
67 PRK14024 phosphoribosyl isomer 99.3 6.9E-10 1.5E-14 102.2 19.5 180 70-285 30-228 (241)
68 TIGR00693 thiE thiamine-phosph 99.3 1.7E-09 3.7E-14 95.7 21.1 168 77-284 13-185 (196)
69 PRK14114 1-(5-phosphoribosyl)- 99.2 8.8E-10 1.9E-14 101.8 19.0 175 71-285 29-229 (241)
70 PRK04180 pyridoxal biosynthesi 99.2 1.4E-10 3E-15 108.5 13.4 180 80-284 27-239 (293)
71 PRK06552 keto-hydroxyglutarate 99.2 3.3E-09 7.2E-14 96.2 22.0 173 64-287 14-191 (213)
72 PRK01033 imidazole glycerol ph 99.2 9.7E-10 2.1E-14 102.2 18.6 176 80-285 33-232 (258)
73 cd04739 DHOD_like Dihydroorota 99.2 2.4E-09 5.2E-14 102.8 21.8 170 63-284 100-271 (325)
74 PRK00208 thiG thiazole synthas 99.2 1.5E-09 3.3E-14 99.7 18.4 178 70-284 17-209 (250)
75 PRK07565 dihydroorotate dehydr 99.2 2.3E-09 5E-14 103.2 20.5 170 63-284 102-273 (334)
76 PRK13586 1-(5-phosphoribosyl)- 99.2 2E-09 4.4E-14 98.8 19.1 177 71-284 29-223 (232)
77 PRK13306 ulaD 3-keto-L-gulonat 99.2 5.5E-09 1.2E-13 94.9 20.3 188 63-285 4-197 (216)
78 cd04740 DHOD_1B_like Dihydroor 99.2 4.2E-09 9.2E-14 99.3 20.2 177 62-284 89-265 (296)
79 PRK09140 2-dehydro-3-deoxy-6-p 99.2 1.4E-08 3E-13 91.7 22.4 170 65-285 12-185 (206)
80 TIGR01919 hisA-trpF 1-(5-phosp 99.2 3.2E-09 6.9E-14 98.1 18.5 175 80-285 34-231 (243)
81 PRK03512 thiamine-phosphate py 99.1 1.5E-08 3.3E-13 91.8 22.3 171 67-284 15-191 (211)
82 PF00977 His_biosynth: Histidi 99.1 3.9E-10 8.5E-15 103.1 12.1 182 68-284 25-225 (229)
83 PRK04128 1-(5-phosphoribosyl)- 99.1 4E-09 8.7E-14 96.6 17.8 168 80-285 33-217 (228)
84 cd02940 DHPD_FMN Dihydropyrimi 99.1 9.9E-09 2.1E-13 97.4 20.8 184 63-284 100-286 (299)
85 cd04728 ThiG Thiazole synthase 99.1 6.6E-09 1.4E-13 95.4 18.5 179 70-284 16-209 (248)
86 TIGR00734 hisAF_rel hisA/hisF 99.1 1.9E-09 4.1E-14 98.3 14.8 179 68-284 32-218 (221)
87 PRK07455 keto-hydroxyglutarate 99.1 2.4E-08 5.2E-13 88.8 21.0 172 64-284 13-185 (187)
88 PLN02446 (5-phosphoribosyl)-5- 99.1 1.6E-08 3.5E-13 94.2 20.5 178 66-283 37-242 (262)
89 cd00452 KDPG_aldolase KDPG and 99.1 1.2E-08 2.6E-13 90.6 18.5 162 75-285 14-177 (190)
90 PRK05718 keto-hydroxyglutarate 99.1 6.1E-08 1.3E-12 87.9 22.7 193 64-309 16-210 (212)
91 PLN02898 HMP-P kinase/thiamin- 99.1 2.3E-08 5E-13 101.2 21.8 179 65-284 291-480 (502)
92 PRK08999 hypothetical protein; 99.1 1.2E-08 2.6E-13 96.7 18.5 164 78-282 145-311 (312)
93 PRK13813 orotidine 5'-phosphat 99.0 9.9E-09 2.1E-13 92.5 15.9 177 69-284 8-197 (215)
94 cd02801 DUS_like_FMN Dihydrour 99.0 1.1E-08 2.3E-13 92.6 15.9 159 61-284 53-218 (231)
95 PF00218 IGPS: Indole-3-glycer 99.0 6.8E-08 1.5E-12 89.8 20.9 189 60-285 45-244 (254)
96 PRK08318 dihydropyrimidine deh 99.0 5.4E-08 1.2E-12 96.4 21.6 184 63-284 100-287 (420)
97 COG0134 TrpC Indole-3-glycerol 99.0 2.9E-08 6.3E-13 91.8 18.0 189 60-285 43-242 (254)
98 PRK07259 dihydroorotate dehydr 99.0 5E-08 1.1E-12 92.4 20.0 176 63-284 92-268 (301)
99 TIGR01182 eda Entner-Doudoroff 99.0 1.1E-07 2.4E-12 85.7 20.2 191 65-308 10-202 (204)
100 PLN02495 oxidoreductase, actin 99.0 3.5E-08 7.6E-13 96.8 18.3 213 49-304 100-322 (385)
101 PRK12290 thiE thiamine-phospha 99.0 1.4E-07 2.9E-12 93.4 21.6 173 65-284 211-397 (437)
102 TIGR01037 pyrD_sub1_fam dihydr 99.0 8.4E-08 1.8E-12 90.8 19.5 175 64-284 92-268 (300)
103 cd04741 DHOD_1A_like Dihydroor 99.0 3.9E-08 8.4E-13 93.2 17.1 178 64-284 93-277 (294)
104 cd03174 DRE_TIM_metallolyase D 98.9 5.7E-08 1.2E-12 89.4 17.4 182 75-288 17-228 (265)
105 TIGR02129 hisA_euk phosphoribo 98.9 6.4E-08 1.4E-12 89.8 17.6 171 80-287 41-240 (253)
106 PRK13957 indole-3-glycerol-pho 98.9 6.8E-07 1.5E-11 82.8 22.5 188 61-285 39-236 (247)
107 TIGR03151 enACPred_II putative 98.9 2.6E-07 5.6E-12 88.2 19.8 153 123-288 46-199 (307)
108 cd02810 DHOD_DHPD_FMN Dihydroo 98.9 1.7E-07 3.7E-12 88.0 18.1 214 68-284 12-277 (289)
109 PRK05286 dihydroorotate dehydr 98.9 1.1E-07 2.4E-12 92.1 16.9 162 75-284 155-323 (344)
110 PRK05437 isopentenyl pyrophosp 98.8 4.3E-07 9.3E-12 88.3 20.4 208 50-308 107-318 (352)
111 PRK09517 multifunctional thiam 98.8 5.2E-07 1.1E-11 95.7 22.7 188 77-306 19-217 (755)
112 PLN02617 imidazole glycerol ph 98.8 2E-07 4.4E-12 95.1 18.8 197 80-305 270-531 (538)
113 TIGR00737 nifR3_yhdG putative 98.8 2E-07 4.2E-12 89.2 17.5 159 62-284 62-227 (319)
114 PRK07114 keto-hydroxyglutarate 98.8 1.1E-06 2.3E-11 80.3 20.5 171 64-284 16-193 (222)
115 cd02811 IDI-2_FMN Isopentenyl- 98.8 8E-07 1.7E-11 85.5 20.7 204 52-308 101-311 (326)
116 cd00405 PRAI Phosphoribosylant 98.8 2.8E-07 6.2E-12 82.4 16.3 184 79-305 8-202 (203)
117 COG0167 PyrD Dihydroorotate de 98.8 5.7E-07 1.2E-11 85.8 19.1 175 67-285 99-276 (310)
118 cd02809 alpha_hydroxyacid_oxid 98.8 6.2E-07 1.3E-11 85.1 19.4 155 75-308 127-284 (299)
119 PF01180 DHO_dh: Dihydroorotat 98.8 1.8E-08 3.9E-13 95.2 8.8 165 76-284 111-278 (295)
120 PRK02506 dihydroorotate dehydr 98.8 1.9E-07 4.1E-12 89.2 15.8 176 63-284 93-275 (310)
121 PRK10415 tRNA-dihydrouridine s 98.8 2.1E-07 4.6E-12 89.3 15.8 161 63-284 65-229 (321)
122 PF01081 Aldolase: KDPG and KH 98.8 2.8E-07 6E-12 82.7 15.3 172 64-285 9-182 (196)
123 PRK06015 keto-hydroxyglutarate 98.8 1.5E-06 3.2E-11 78.3 19.7 188 65-307 6-197 (201)
124 PLN02460 indole-3-glycerol-pho 98.8 2.3E-07 4.9E-12 89.3 15.2 187 62-285 118-323 (338)
125 cd04738 DHOD_2_like Dihydrooro 98.8 3.9E-07 8.4E-12 87.6 16.9 160 77-284 148-314 (327)
126 cd00945 Aldolase_Class_I Class 98.8 1.8E-06 3.9E-11 75.3 19.6 173 75-279 11-201 (201)
127 PRK11572 copper homeostasis pr 98.7 7E-07 1.5E-11 82.6 16.9 168 80-277 11-196 (248)
128 TIGR00736 nifR3_rel_arch TIM-b 98.7 6.1E-07 1.3E-11 82.4 16.3 172 46-284 53-225 (231)
129 PRK11815 tRNA-dihydrouridine s 98.7 4.4E-07 9.6E-12 87.5 16.2 168 62-284 64-238 (333)
130 cd00958 DhnA Class I fructose- 98.7 2.7E-06 5.8E-11 77.6 20.5 171 73-284 17-219 (235)
131 PLN02535 glycolate oxidase 98.7 2.3E-06 5E-11 83.5 20.9 171 49-288 114-316 (364)
132 PRK06806 fructose-bisphosphate 98.7 1.6E-05 3.5E-10 75.1 25.6 209 49-286 5-237 (281)
133 PRK13802 bifunctional indole-3 98.7 3.5E-06 7.6E-11 88.3 22.5 189 60-285 47-246 (695)
134 TIGR01036 pyrD_sub2 dihydrooro 98.7 4E-07 8.8E-12 87.9 13.9 161 76-284 153-322 (335)
135 cd04736 MDH_FMN Mandelate dehy 98.7 6.3E-06 1.4E-10 80.3 22.0 68 239-308 278-346 (361)
136 PF03060 NMO: Nitronate monoox 98.6 2.6E-06 5.6E-11 82.1 18.5 158 123-288 46-228 (330)
137 TIGR02151 IPP_isom_2 isopenten 98.6 4.6E-06 9.9E-11 80.5 20.1 177 81-308 132-311 (333)
138 cd04737 LOX_like_FMN L-Lactate 98.6 5.1E-06 1.1E-10 80.8 20.4 161 61-287 125-313 (351)
139 TIGR01859 fruc_bis_ald_ fructo 98.6 3.1E-05 6.8E-10 73.2 25.1 209 50-286 4-237 (282)
140 CHL00162 thiG thiamin biosynth 98.6 7.4E-06 1.6E-10 75.7 19.6 183 70-284 23-223 (267)
141 PF03932 CutC: CutC family; I 98.6 1.6E-06 3.5E-11 78.0 14.9 167 80-276 10-196 (201)
142 cd07944 DRE_TIM_HOA_like 4-hyd 98.6 2.9E-06 6.3E-11 79.4 16.9 179 74-276 17-212 (266)
143 PLN02979 glycolate oxidase 98.6 1.2E-05 2.5E-10 78.3 21.4 173 49-288 111-316 (366)
144 PRK11197 lldD L-lactate dehydr 98.6 5.5E-06 1.2E-10 81.3 19.2 68 240-308 288-357 (381)
145 COG0800 Eda 2-keto-3-deoxy-6-p 98.6 1.2E-05 2.6E-10 72.6 19.5 171 64-284 14-186 (211)
146 PLN02826 dihydroorotate dehydr 98.6 1.6E-06 3.4E-11 85.9 15.1 165 76-284 203-375 (409)
147 PRK10550 tRNA-dihydrouridine s 98.6 4.1E-06 8.9E-11 80.2 17.3 162 62-284 62-229 (312)
148 cd03332 LMO_FMN L-Lactate 2-mo 98.5 1.4E-05 2.9E-10 78.6 20.9 192 49-308 127-365 (383)
149 PLN02493 probable peroxisomal 98.5 1.7E-05 3.6E-10 77.6 21.3 173 49-288 112-317 (367)
150 cd02922 FCB2_FMN Flavocytochro 98.5 8.2E-06 1.8E-10 79.2 19.1 186 64-308 121-328 (344)
151 COG0107 HisF Imidazoleglycerol 98.5 4.9E-06 1.1E-10 75.8 16.2 197 68-305 26-248 (256)
152 PRK05458 guanosine 5'-monophos 98.5 1.2E-05 2.7E-10 77.3 19.6 154 60-287 81-238 (326)
153 cd07937 DRE_TIM_PC_TC_5S Pyruv 98.5 9.7E-06 2.1E-10 76.2 18.6 183 74-276 18-221 (275)
154 PRK06801 hypothetical protein; 98.5 8E-05 1.7E-09 70.6 24.8 210 49-286 5-240 (286)
155 cd02803 OYE_like_FMN_family Ol 98.5 3.5E-06 7.6E-11 80.4 15.5 163 78-284 142-316 (327)
156 TIGR01304 IMP_DH_rel_2 IMP deh 98.5 1.3E-05 2.9E-10 78.4 19.6 156 123-288 117-293 (369)
157 cd02911 arch_FMN Archeal FMN-b 98.5 1.5E-05 3.2E-10 73.4 18.1 166 46-281 57-222 (233)
158 PF04481 DUF561: Protein of un 98.5 7.8E-05 1.7E-09 67.5 22.1 192 48-286 3-221 (242)
159 PRK07535 methyltetrahydrofolat 98.5 2.6E-05 5.6E-10 72.9 19.5 177 75-279 23-228 (261)
160 PRK07226 fructose-bisphosphate 98.4 5.2E-05 1.1E-09 70.9 21.2 186 73-303 35-251 (267)
161 TIGR01949 AroFGH_arch predicte 98.4 3E-05 6.4E-10 72.1 19.4 210 49-303 6-247 (258)
162 TIGR01306 GMP_reduct_2 guanosi 98.4 2.2E-05 4.8E-10 75.4 18.9 159 57-287 75-235 (321)
163 PRK09427 bifunctional indole-3 98.4 3.2E-05 7E-10 77.6 20.9 186 61-285 48-244 (454)
164 cd02932 OYE_YqiM_FMN Old yello 98.4 7.3E-06 1.6E-10 79.0 15.7 155 78-284 155-325 (336)
165 TIGR02708 L_lactate_ox L-lacta 98.4 3.5E-05 7.6E-10 75.3 20.4 192 49-308 122-340 (367)
166 PTZ00314 inosine-5'-monophosph 98.4 5.9E-06 1.3E-10 83.8 15.5 139 78-287 241-381 (495)
167 PF00682 HMGL-like: HMGL-like 98.4 1.6E-05 3.5E-10 72.4 17.0 173 73-276 10-210 (237)
168 cd07943 DRE_TIM_HOA 4-hydroxy- 98.4 2.1E-05 4.6E-10 73.2 17.8 182 74-276 19-214 (263)
169 TIGR02090 LEU1_arch isopropylm 98.4 2.9E-05 6.4E-10 75.8 19.4 166 76-276 21-213 (363)
170 PF09370 TIM-br_sig_trns: TIM- 98.4 2.8E-05 6.1E-10 72.4 18.1 215 68-308 19-267 (268)
171 cd00381 IMPDH IMPDH: The catal 98.4 2.1E-05 4.6E-10 75.7 18.0 130 157-288 96-235 (325)
172 TIGR01302 IMP_dehydrog inosine 98.4 9.3E-06 2E-10 81.4 16.1 140 78-288 224-365 (450)
173 TIGR00742 yjbN tRNA dihydrouri 98.4 1.3E-05 2.8E-10 77.0 16.4 170 61-284 53-228 (318)
174 cd07941 DRE_TIM_LeuA3 Desulfob 98.4 2.8E-05 6.2E-10 72.9 18.3 175 74-276 17-224 (273)
175 TIGR02660 nifV_homocitr homoci 98.4 2.9E-05 6.4E-10 75.8 18.8 167 75-276 21-214 (365)
176 PF01070 FMN_dh: FMN-dependent 98.4 2.6E-05 5.7E-10 76.0 18.2 162 61-287 110-317 (356)
177 cd07948 DRE_TIM_HCS Saccharomy 98.4 2E-05 4.3E-10 73.7 16.7 167 75-276 20-213 (262)
178 PRK10128 2-keto-3-deoxy-L-rham 98.4 9.6E-05 2.1E-09 69.4 20.9 199 50-285 5-243 (267)
179 cd07939 DRE_TIM_NifV Streptomy 98.3 4.4E-05 9.6E-10 70.9 18.1 167 75-276 18-211 (259)
180 PRK08195 4-hyroxy-2-oxovalerat 98.3 3.7E-05 8E-10 74.4 18.1 182 74-276 22-218 (337)
181 TIGR03217 4OH_2_O_val_ald 4-hy 98.3 6.3E-05 1.4E-09 72.7 19.6 183 74-276 21-217 (333)
182 PRK07315 fructose-bisphosphate 98.3 0.00025 5.3E-09 67.5 23.3 207 49-284 5-237 (293)
183 PRK07998 gatY putative fructos 98.3 0.00056 1.2E-08 64.7 24.8 206 49-286 5-236 (283)
184 PRK11840 bifunctional sulfur c 98.3 2.1E-05 4.5E-10 75.3 14.8 179 70-284 90-283 (326)
185 COG2070 Dioxygenases related t 98.3 8.9E-06 1.9E-10 78.7 12.1 161 122-288 48-222 (336)
186 cd07940 DRE_TIM_IPMS 2-isoprop 98.3 0.0001 2.3E-09 68.8 18.6 167 75-276 18-218 (268)
187 PF01207 Dus: Dihydrouridine s 98.3 2.8E-05 6E-10 74.3 14.9 157 62-284 53-218 (309)
188 PRK11858 aksA trans-homoaconit 98.2 0.0001 2.2E-09 72.4 19.1 166 76-276 25-217 (378)
189 cd04742 NPD_FabD 2-Nitropropan 98.2 6.4E-05 1.4E-09 74.6 17.5 160 121-288 47-257 (418)
190 PRK13305 sgbH 3-keto-L-gulonat 98.2 1.4E-05 2.9E-10 73.0 11.8 200 72-310 11-215 (218)
191 PRK04128 1-(5-phosphoribosyl)- 98.2 7.4E-06 1.6E-10 75.1 9.5 76 203-283 31-106 (228)
192 PF05690 ThiG: Thiazole biosyn 98.2 3.3E-05 7.1E-10 70.7 13.1 184 70-285 15-210 (247)
193 cd04735 OYE_like_4_FMN Old yel 98.2 3.7E-05 8.1E-10 74.7 14.4 154 78-284 145-318 (353)
194 PRK00748 1-(5-phosphoribosyl)- 98.2 1.4E-05 3.1E-10 72.5 10.5 78 203-285 31-109 (233)
195 PRK13523 NADPH dehydrogenase N 98.2 4.3E-05 9.4E-10 73.9 14.4 152 78-284 143-310 (337)
196 cd00739 DHPS DHPS subgroup of 98.2 0.00014 3E-09 67.9 17.2 172 75-270 22-216 (257)
197 COG3142 CutC Uncharacterized p 98.2 5.9E-05 1.3E-09 68.7 14.0 164 80-273 11-194 (241)
198 PRK00915 2-isopropylmalate syn 98.2 0.00015 3.2E-09 74.0 18.6 171 75-276 24-225 (513)
199 cd00423 Pterin_binding Pterin 98.2 7.5E-05 1.6E-09 69.5 15.1 161 75-256 22-205 (258)
200 cd04734 OYE_like_3_FMN Old yel 98.2 5.5E-05 1.2E-09 73.3 14.7 168 78-284 142-320 (343)
201 PRK08649 inosine 5-monophospha 98.1 0.00054 1.2E-08 67.2 21.5 156 122-287 115-293 (368)
202 TIGR00007 phosphoribosylformim 98.1 2E-05 4.3E-10 71.6 10.8 77 203-284 29-106 (230)
203 PF00478 IMPDH: IMP dehydrogen 98.1 5.5E-05 1.2E-09 73.5 14.3 140 79-288 109-249 (352)
204 PRK12331 oxaloacetate decarbox 98.1 0.00019 4E-09 72.1 18.2 181 75-276 24-226 (448)
205 PRK14024 phosphoribosyl isomer 98.1 2.3E-05 4.9E-10 72.3 10.6 78 203-285 33-110 (241)
206 PRK09389 (R)-citramalate synth 98.1 0.00028 6E-09 71.6 19.2 167 75-276 22-215 (488)
207 PRK11320 prpB 2-methylisocitra 98.1 0.0017 3.7E-08 61.7 23.4 202 52-286 7-241 (292)
208 PRK08185 hypothetical protein; 98.1 0.0027 5.8E-08 60.2 24.2 203 52-286 3-235 (283)
209 cd02933 OYE_like_FMN Old yello 98.1 0.00012 2.6E-09 70.9 15.4 151 78-284 153-319 (338)
210 TIGR00735 hisF imidazoleglycer 98.1 1.6E-05 3.6E-10 73.6 9.1 77 203-284 31-108 (254)
211 PRK06843 inosine 5-monophospha 98.1 7.3E-05 1.6E-09 73.9 13.8 124 158-287 156-293 (404)
212 TIGR01306 GMP_reduct_2 guanosi 98.1 0.00012 2.6E-09 70.4 14.9 129 137-279 32-165 (321)
213 TIGR01740 pyrF orotidine 5'-ph 98.1 0.00024 5.2E-09 64.2 16.1 179 69-284 3-201 (213)
214 PRK12344 putative alpha-isopro 98.1 0.0002 4.3E-09 73.3 17.3 174 75-276 25-230 (524)
215 TIGR02814 pfaD_fam PfaD family 98.1 0.00044 9.6E-09 69.1 19.2 39 250-288 224-262 (444)
216 PLN02274 inosine-5'-monophosph 98.1 8.5E-05 1.9E-09 75.6 14.5 125 158-288 251-389 (505)
217 PRK14041 oxaloacetate decarbox 98.0 0.00052 1.1E-08 69.2 19.2 183 74-276 22-225 (467)
218 cd04733 OYE_like_2_FMN Old yel 98.0 0.00029 6.3E-09 68.0 16.7 162 78-284 150-327 (338)
219 cd04743 NPD_PKS 2-Nitropropane 98.0 0.00044 9.5E-09 66.5 17.6 153 123-287 38-210 (320)
220 TIGR01108 oadA oxaloacetate de 98.0 0.00035 7.5E-09 72.3 18.1 175 74-276 18-221 (582)
221 PRK05692 hydroxymethylglutaryl 98.0 0.00073 1.6E-08 64.1 18.9 172 75-276 24-228 (287)
222 PRK00230 orotidine 5'-phosphat 98.0 0.00081 1.8E-08 61.6 18.7 197 71-307 9-228 (230)
223 TIGR02319 CPEP_Pphonmut carbox 98.0 0.0047 1E-07 58.8 23.8 202 52-286 6-240 (294)
224 TIGR02317 prpB methylisocitrat 98.0 0.0018 3.9E-08 61.4 20.9 200 52-286 3-236 (285)
225 PLN02746 hydroxymethylglutaryl 98.0 0.0011 2.4E-08 64.4 19.8 171 76-276 67-270 (347)
226 cd02931 ER_like_FMN Enoate red 98.0 0.0002 4.3E-09 70.4 14.8 174 78-284 151-340 (382)
227 TIGR03572 WbuZ glycosyl amidat 98.0 5.4E-05 1.2E-09 69.0 10.0 78 203-284 31-108 (232)
228 PRK02083 imidazole glycerol ph 98.0 4.5E-05 9.7E-10 70.6 9.5 78 203-284 31-108 (253)
229 PRK14040 oxaloacetate decarbox 98.0 0.0004 8.7E-09 72.0 17.4 175 73-276 23-227 (593)
230 cd07938 DRE_TIM_HMGL 3-hydroxy 98.0 0.00078 1.7E-08 63.4 18.0 171 76-276 19-222 (274)
231 TIGR00977 LeuA_rel 2-isopropyl 98.0 0.00051 1.1E-08 70.3 17.9 173 76-276 22-227 (526)
232 PRK12581 oxaloacetate decarbox 98.0 0.00036 7.7E-09 70.3 16.4 179 74-276 32-235 (468)
233 TIGR01858 tag_bisphos_ald clas 97.9 0.008 1.7E-07 56.9 24.6 206 50-286 4-237 (282)
234 cd00377 ICL_PEPM Members of th 97.9 0.001 2.2E-08 61.6 17.8 180 81-286 20-233 (243)
235 PRK10558 alpha-dehydro-beta-de 97.9 0.0029 6.3E-08 59.1 21.0 195 51-284 7-242 (256)
236 cd04732 HisA HisA. Phosphorib 97.9 6.5E-05 1.4E-09 68.1 9.8 77 203-284 30-107 (234)
237 TIGR01919 hisA-trpF 1-(5-phosp 97.9 5E-05 1.1E-09 70.3 8.9 75 205-284 34-108 (243)
238 PRK12737 gatY tagatose-bisphos 97.9 0.011 2.4E-07 56.0 24.9 205 49-284 5-237 (284)
239 TIGR01496 DHPS dihydropteroate 97.9 0.00073 1.6E-08 63.1 16.7 161 75-257 21-203 (257)
240 PRK13587 1-(5-phosphoribosyl)- 97.9 5.5E-05 1.2E-09 69.6 9.0 77 203-284 32-110 (234)
241 TIGR03239 GarL 2-dehydro-3-deo 97.9 0.0038 8.2E-08 58.1 21.2 190 56-284 5-235 (249)
242 PRK12738 kbaY tagatose-bisphos 97.9 0.014 3.1E-07 55.3 25.4 206 50-286 6-239 (286)
243 cd04731 HisF The cyclase subun 97.9 6.9E-05 1.5E-09 68.7 9.5 77 204-284 29-105 (243)
244 cd02930 DCR_FMN 2,4-dienoyl-Co 97.9 0.00019 4.1E-09 69.7 13.0 160 78-284 138-311 (353)
245 PF13714 PEP_mutase: Phosphoen 97.9 0.00053 1.1E-08 63.4 15.3 198 54-286 1-226 (238)
246 PRK01222 N-(5'-phosphoribosyl) 97.9 0.0054 1.2E-07 55.5 21.6 189 80-309 13-208 (210)
247 PRK05096 guanosine 5'-monophos 97.9 0.00028 6.1E-09 68.0 13.7 141 77-287 107-250 (346)
248 COG5016 Pyruvate/oxaloacetate 97.9 0.00035 7.5E-09 68.5 14.1 176 77-276 28-228 (472)
249 TIGR01305 GMP_reduct_1 guanosi 97.9 0.0005 1.1E-08 66.3 15.0 139 138-287 44-191 (343)
250 PRK11613 folP dihydropteroate 97.9 0.0011 2.4E-08 62.8 17.1 105 75-199 36-140 (282)
251 PRK14114 1-(5-phosphoribosyl)- 97.8 0.00016 3.4E-09 66.9 11.0 76 203-284 31-107 (241)
252 PRK01033 imidazole glycerol ph 97.8 9.5E-05 2.1E-09 68.8 9.4 77 203-284 31-108 (258)
253 PRK13585 1-(5-phosphoribosyl)- 97.8 8.7E-05 1.9E-09 67.8 9.0 78 203-284 33-110 (241)
254 TIGR01305 GMP_reduct_1 guanosi 97.8 0.00083 1.8E-08 64.8 15.8 138 77-286 106-248 (343)
255 PRK07709 fructose-bisphosphate 97.8 0.026 5.7E-07 53.5 25.8 208 49-286 5-240 (285)
256 PRK12857 fructose-1,6-bisphosp 97.8 0.019 4E-07 54.5 24.7 207 49-286 5-239 (284)
257 cd04723 HisA_HisF Phosphoribos 97.8 9E-05 2E-09 68.0 8.9 77 203-284 36-112 (233)
258 PF00977 His_biosynth: Histidi 97.8 5.6E-05 1.2E-09 69.2 7.3 78 202-284 29-107 (229)
259 COG2513 PrpB PEP phosphonomuta 97.8 0.0044 9.6E-08 58.5 19.9 202 50-286 6-241 (289)
260 PLN03228 methylthioalkylmalate 97.8 0.00066 1.4E-08 69.1 15.5 168 77-278 106-317 (503)
261 PRK09282 pyruvate carboxylase 97.8 0.0015 3.3E-08 67.8 18.5 182 74-276 23-226 (592)
262 PRK09195 gatY tagatose-bisphos 97.8 0.015 3.2E-07 55.2 23.6 207 49-286 5-239 (284)
263 COG0135 TrpF Phosphoribosylant 97.8 0.0033 7.1E-08 57.0 18.3 190 79-308 11-207 (208)
264 COG2022 ThiG Uncharacterized e 97.8 0.00061 1.3E-08 62.3 13.5 182 70-285 23-217 (262)
265 PRK08610 fructose-bisphosphate 97.8 0.024 5.1E-07 53.9 24.7 207 49-285 5-239 (286)
266 TIGR01303 IMP_DH_rel_1 IMP deh 97.8 0.00066 1.4E-08 68.7 15.0 127 157-287 227-365 (475)
267 TIGR02311 HpaI 2,4-dihydroxyhe 97.8 0.0044 9.6E-08 57.5 19.4 192 55-285 4-237 (249)
268 COG0329 DapA Dihydrodipicolina 97.8 0.0028 6E-08 60.4 18.3 180 72-283 20-213 (299)
269 PRK12330 oxaloacetate decarbox 97.8 0.0019 4.2E-08 65.6 17.9 181 75-276 25-229 (499)
270 PF01116 F_bP_aldolase: Fructo 97.8 0.027 5.9E-07 53.5 24.8 210 48-286 3-242 (287)
271 PRK13753 dihydropteroate synth 97.7 0.0026 5.5E-08 60.2 17.5 105 75-200 23-127 (279)
272 TIGR00167 cbbA ketose-bisphosp 97.7 0.04 8.6E-07 52.4 25.6 208 49-286 5-243 (288)
273 PRK13586 1-(5-phosphoribosyl)- 97.7 0.00027 5.9E-09 65.0 10.7 77 203-284 31-107 (232)
274 COG4981 Enoyl reductase domain 97.7 0.0021 4.5E-08 65.1 17.4 140 147-287 98-261 (717)
275 PLN02446 (5-phosphoribosyl)-5- 97.7 0.00018 3.9E-09 67.3 9.5 76 200-284 41-116 (262)
276 PF00478 IMPDH: IMP dehydrogen 97.7 0.00093 2E-08 65.0 14.7 130 138-279 36-177 (352)
277 cd07945 DRE_TIM_CMS Leptospira 97.7 0.002 4.4E-08 60.8 16.7 167 75-276 17-220 (280)
278 KOG0538 Glycolate oxidase [Ene 97.7 0.0024 5.2E-08 60.7 16.8 182 60-302 120-328 (363)
279 PRK07807 inosine 5-monophospha 97.7 0.00082 1.8E-08 68.1 14.8 123 158-288 230-368 (479)
280 cd00947 TBP_aldolase_IIB Tagat 97.7 0.035 7.6E-07 52.5 24.6 204 52-286 3-233 (276)
281 PRK05567 inosine 5'-monophosph 97.7 0.00048 1E-08 69.8 12.9 123 158-287 231-368 (486)
282 TIGR02320 PEP_mutase phosphoen 97.7 0.0074 1.6E-07 57.3 20.0 157 122-286 61-247 (285)
283 PF00809 Pterin_bind: Pterin b 97.7 0.0012 2.6E-08 59.7 13.9 161 77-257 19-203 (210)
284 COG0119 LeuA Isopropylmalate/h 97.7 0.00095 2.1E-08 66.3 14.3 179 76-288 23-229 (409)
285 TIGR02129 hisA_euk phosphoribo 97.7 0.00018 3.8E-09 67.0 8.6 69 205-284 41-109 (253)
286 COG0042 tRNA-dihydrouridine sy 97.7 0.0019 4.2E-08 62.2 16.0 161 62-284 66-233 (323)
287 PRK05096 guanosine 5'-monophos 97.7 0.0015 3.3E-08 63.0 15.0 130 138-279 45-179 (346)
288 TIGR00284 dihydropteroate synt 97.6 0.0028 6.1E-08 64.4 17.3 152 70-258 158-319 (499)
289 COG0106 HisA Phosphoribosylfor 97.6 0.00046 9.9E-09 63.6 10.4 78 203-284 32-109 (241)
290 cd00951 KDGDH 5-dehydro-4-deox 97.6 0.013 2.7E-07 55.5 20.6 187 65-281 5-206 (289)
291 PLN02363 phosphoribosylanthran 97.6 0.017 3.6E-07 54.1 20.8 194 79-310 56-255 (256)
292 PF00701 DHDPS: Dihydrodipicol 97.6 0.012 2.6E-07 55.3 20.1 178 72-282 17-208 (289)
293 PRK14042 pyruvate carboxylase 97.6 0.0035 7.6E-08 65.0 17.4 181 75-276 24-226 (596)
294 COG1830 FbaB DhnA-type fructos 97.6 0.01 2.2E-07 55.5 18.7 195 48-284 11-242 (265)
295 PRK13397 3-deoxy-7-phosphohept 97.6 0.022 4.7E-07 53.1 20.8 203 77-308 29-249 (250)
296 cd00408 DHDPS-like Dihydrodipi 97.6 0.011 2.3E-07 55.3 19.1 181 67-281 8-203 (281)
297 COG0149 TpiA Triosephosphate i 97.6 0.00076 1.6E-08 62.7 11.0 125 159-285 80-237 (251)
298 cd00311 TIM Triosephosphate is 97.5 0.0011 2.5E-08 61.3 11.9 122 159-284 76-233 (242)
299 cd00740 MeTr MeTr subgroup of 97.5 0.0083 1.8E-07 55.9 17.6 156 75-258 24-205 (252)
300 cd00381 IMPDH IMPDH: The catal 97.5 0.0026 5.6E-08 61.4 14.6 128 138-279 33-163 (325)
301 cd02808 GltS_FMN Glutamate syn 97.5 0.0027 5.8E-08 62.8 15.0 106 179-286 199-321 (392)
302 TIGR00973 leuA_bact 2-isopropy 97.5 0.0048 1E-07 62.8 17.1 166 76-276 22-222 (494)
303 PRK12999 pyruvate carboxylase; 97.5 0.0048 1E-07 68.6 18.3 181 75-276 553-763 (1146)
304 PRK08255 salicylyl-CoA 5-hydro 97.5 0.004 8.7E-08 66.5 16.7 153 78-284 552-722 (765)
305 PRK14847 hypothetical protein; 97.5 0.0034 7.4E-08 60.7 14.6 175 70-277 46-270 (333)
306 cd06557 KPHMT-like Ketopantoat 97.5 0.016 3.5E-07 54.1 18.6 120 53-196 3-131 (254)
307 KOG4201 Anthranilate synthase 97.5 0.0044 9.6E-08 56.3 14.2 197 51-285 58-272 (289)
308 PRK13958 N-(5'-phosphoribosyl) 97.5 0.03 6.4E-07 50.7 19.7 187 79-308 10-205 (207)
309 KOG1606 Stationary phase-induc 97.5 0.0028 6.1E-08 57.4 12.7 178 80-284 31-243 (296)
310 PLN02321 2-isopropylmalate syn 97.4 0.0066 1.4E-07 63.4 17.3 166 76-276 107-316 (632)
311 PRK10605 N-ethylmaleimide redu 97.4 0.0037 8E-08 61.1 14.7 156 78-284 160-326 (362)
312 KOG4013 Predicted Cu2+ homeost 97.4 0.00047 1E-08 61.5 7.5 161 78-271 17-200 (255)
313 COG1902 NemA NADH:flavin oxido 97.4 0.0034 7.3E-08 61.5 14.3 161 78-284 150-323 (363)
314 PRK08649 inosine 5-monophospha 97.4 0.0043 9.3E-08 60.9 15.0 39 239-279 177-215 (368)
315 TIGR00676 fadh2 5,10-methylene 97.4 0.024 5.2E-07 53.2 19.5 210 70-308 7-247 (272)
316 PF00697 PRAI: N-(5'phosphorib 97.4 0.0018 3.8E-08 58.0 11.2 185 79-304 8-196 (197)
317 PRK00311 panB 3-methyl-2-oxobu 97.4 0.022 4.9E-07 53.4 18.7 119 53-196 6-134 (264)
318 PF00724 Oxidored_FMN: NADH:fl 97.4 0.0028 6E-08 61.3 13.1 165 78-284 150-326 (341)
319 PF00215 OMPdecase: Orotidine 97.4 0.0022 4.7E-08 58.4 11.7 102 70-192 6-111 (226)
320 cd02929 TMADH_HD_FMN Trimethyl 97.4 0.0043 9.4E-08 60.8 14.4 164 78-284 151-324 (370)
321 cd00953 KDG_aldolase KDG (2-ke 97.4 0.03 6.5E-07 52.7 19.5 179 67-281 11-201 (279)
322 PRK14565 triosephosphate isome 97.4 0.003 6.4E-08 58.4 12.3 122 159-284 77-223 (237)
323 PRK05458 guanosine 5'-monophos 97.4 0.0045 9.7E-08 59.8 14.0 128 137-279 35-168 (326)
324 cd06556 ICL_KPHMT Members of t 97.4 0.049 1.1E-06 50.5 20.2 208 54-309 4-238 (240)
325 PRK07084 fructose-bisphosphate 97.3 0.16 3.5E-06 49.0 25.2 213 48-286 10-275 (321)
326 PLN02617 imidazole glycerol ph 97.3 0.00099 2.1E-08 68.4 9.5 79 204-285 269-360 (538)
327 COG0107 HisF Imidazoleglycerol 97.3 0.001 2.2E-08 60.9 8.3 75 205-284 33-108 (256)
328 TIGR00677 fadh2_euk methylenet 97.3 0.051 1.1E-06 51.4 20.2 204 76-308 15-251 (281)
329 cd04747 OYE_like_5_FMN Old yel 97.3 0.01 2.3E-07 58.0 15.7 159 78-284 145-333 (361)
330 TIGR02321 Pphn_pyruv_hyd phosp 97.3 0.033 7E-07 53.0 18.5 180 81-286 26-242 (290)
331 TIGR00222 panB 3-methyl-2-oxob 97.3 0.051 1.1E-06 51.0 19.3 119 53-196 6-133 (263)
332 PRK08645 bifunctional homocyst 97.3 0.066 1.4E-06 55.9 22.2 226 54-308 315-579 (612)
333 PF04309 G3P_antiterm: Glycero 97.3 0.0023 4.9E-08 56.5 9.7 103 159-279 63-169 (175)
334 TIGR02313 HpaI-NOT-DapA 2,4-di 97.3 0.042 9.1E-07 52.1 19.1 179 70-281 14-208 (294)
335 cd00331 IGPS Indole-3-glycerol 97.3 0.0032 6.9E-08 56.7 10.9 74 204-284 33-106 (217)
336 PRK00042 tpiA triosephosphate 97.2 0.0021 4.5E-08 59.9 9.9 122 159-284 78-237 (250)
337 TIGR03249 KdgD 5-dehydro-4-deo 97.2 0.035 7.5E-07 52.6 18.3 179 72-281 21-211 (296)
338 KOG2335 tRNA-dihydrouridine sy 97.2 0.021 4.5E-07 55.5 16.7 157 61-284 72-238 (358)
339 PF01791 DeoC: DeoC/LacD famil 97.2 0.0044 9.5E-08 56.7 11.8 124 158-284 80-235 (236)
340 PRK06843 inosine 5-monophospha 97.2 0.012 2.6E-07 58.4 15.3 66 206-279 156-222 (404)
341 PRK08227 autoinducer 2 aldolas 97.2 0.084 1.8E-06 49.6 20.2 164 76-285 41-232 (264)
342 PF02219 MTHFR: Methylenetetra 97.2 0.047 1E-06 51.5 18.8 226 55-308 3-262 (287)
343 PLN02424 ketopantoate hydroxym 97.2 0.078 1.7E-06 51.2 20.2 117 53-196 26-155 (332)
344 TIGR01520 FruBisAldo_II_A fruc 97.2 0.27 5.8E-06 48.1 24.1 214 48-286 13-294 (357)
345 PRK03620 5-dehydro-4-deoxygluc 97.2 0.08 1.7E-06 50.4 20.1 179 72-281 23-213 (303)
346 cd00950 DHDPS Dihydrodipicolin 97.2 0.054 1.2E-06 50.8 18.6 177 71-281 15-206 (284)
347 PLN02417 dihydrodipicolinate s 97.2 0.042 9.1E-07 51.7 17.8 175 72-283 17-204 (280)
348 cd04725 OMP_decarboxylase_like 97.1 0.04 8.7E-07 49.9 17.0 100 72-196 6-106 (216)
349 cd07942 DRE_TIM_LeuA Mycobacte 97.1 0.022 4.8E-07 54.0 15.7 170 76-277 22-239 (284)
350 PRK09196 fructose-1,6-bisphosp 97.1 0.31 6.6E-06 47.6 25.5 211 49-286 5-284 (347)
351 PRK14567 triosephosphate isome 97.1 0.0089 1.9E-07 55.8 12.6 122 159-284 77-236 (253)
352 PRK09197 fructose-bisphosphate 97.1 0.32 6.9E-06 47.5 23.4 224 48-286 7-286 (350)
353 cd00946 FBP_aldolase_IIA Class 97.1 0.32 6.9E-06 47.4 23.4 223 49-286 3-282 (345)
354 cd07947 DRE_TIM_Re_CS Clostrid 97.1 0.067 1.5E-06 50.6 18.3 171 75-276 19-232 (279)
355 COG1411 Uncharacterized protei 97.1 0.001 2.2E-08 59.6 5.5 66 216-286 152-217 (229)
356 PRK05835 fructose-bisphosphate 97.1 0.31 6.8E-06 46.7 25.1 209 50-286 5-262 (307)
357 PRK09427 bifunctional indole-3 97.0 0.1 2.2E-06 52.7 20.3 184 79-308 266-453 (454)
358 TIGR00674 dapA dihydrodipicoli 97.0 0.09 2E-06 49.4 18.9 182 67-282 9-205 (285)
359 PRK03170 dihydrodipicolinate s 97.0 0.063 1.4E-06 50.6 17.8 179 71-281 16-207 (292)
360 PRK09432 metF 5,10-methylenete 97.0 0.17 3.8E-06 48.2 20.7 218 62-308 22-266 (296)
361 TIGR00734 hisAF_rel hisA/hisF 97.0 0.0031 6.7E-08 57.5 8.3 75 203-284 37-113 (221)
362 cd07937 DRE_TIM_PC_TC_5S Pyruv 97.0 0.12 2.6E-06 48.6 19.0 145 78-247 92-246 (275)
363 PRK07107 inosine 5-monophospha 96.9 0.014 2.9E-07 59.7 13.2 127 158-286 245-388 (502)
364 PLN02389 biotin synthase 96.9 0.22 4.7E-06 49.2 21.3 189 75-284 117-335 (379)
365 PRK04147 N-acetylneuraminate l 96.9 0.15 3.2E-06 48.3 19.4 176 72-281 19-209 (293)
366 PRK13396 3-deoxy-7-phosphohept 96.9 0.25 5.4E-06 48.3 20.9 210 68-308 103-336 (352)
367 PTZ00333 triosephosphate isome 96.9 0.016 3.5E-07 54.1 12.2 122 159-284 81-241 (255)
368 cd01568 QPRTase_NadC Quinolina 96.9 0.084 1.8E-06 49.6 17.0 132 140-284 116-260 (269)
369 cd00537 MTHFR Methylenetetrahy 96.9 0.25 5.5E-06 46.1 20.3 174 126-308 45-250 (274)
370 PRK06852 aldolase; Validated 96.9 0.29 6.4E-06 46.9 20.8 177 74-285 56-271 (304)
371 PRK09250 fructose-bisphosphate 96.8 0.083 1.8E-06 51.4 16.9 178 74-285 88-324 (348)
372 PLN02429 triosephosphate isome 96.8 0.012 2.6E-07 56.5 11.1 122 159-284 139-297 (315)
373 TIGR00683 nanA N-acetylneurami 96.8 0.15 3.2E-06 48.3 18.3 178 70-281 14-207 (290)
374 PLN02540 methylenetetrahydrofo 96.8 0.3 6.4E-06 50.6 21.6 204 76-308 14-259 (565)
375 PRK13398 3-deoxy-7-phosphohept 96.8 0.41 8.8E-06 45.0 21.0 204 76-308 40-261 (266)
376 TIGR01361 DAHP_synth_Bsub phos 96.8 0.31 6.8E-06 45.6 20.0 203 76-308 38-259 (260)
377 PLN02561 triosephosphate isome 96.8 0.014 3.1E-07 54.4 10.8 123 159-284 80-238 (253)
378 COG0214 SNZ1 Pyridoxine biosyn 96.7 0.0034 7.4E-08 57.6 6.2 47 239-285 195-243 (296)
379 PRK12858 tagatose 1,6-diphosph 96.7 0.12 2.7E-06 50.2 17.1 185 72-285 44-282 (340)
380 COG0191 Fba Fructose/tagatose 96.7 0.49 1.1E-05 44.9 20.5 204 51-283 7-238 (286)
381 PRK14905 triosephosphate isome 96.7 0.021 4.6E-07 55.8 11.8 123 159-284 87-247 (355)
382 cd00954 NAL N-Acetylneuraminic 96.7 0.18 3.9E-06 47.6 17.7 178 70-281 14-208 (288)
383 TIGR00970 leuA_yeast 2-isoprop 96.6 0.049 1.1E-06 56.4 14.6 170 75-277 46-267 (564)
384 PRK03739 2-isopropylmalate syn 96.6 0.086 1.9E-06 54.5 16.3 177 76-288 51-276 (552)
385 cd00377 ICL_PEPM Members of th 96.6 0.15 3.3E-06 47.1 16.5 129 62-203 69-207 (243)
386 COG1954 GlpP Glycerol-3-phosph 96.6 0.068 1.5E-06 47.0 13.1 95 164-276 73-170 (181)
387 PF03328 HpcH_HpaI: HpcH/HpaI 96.6 0.039 8.4E-07 49.9 12.3 192 66-283 3-216 (221)
388 PRK12595 bifunctional 3-deoxy- 96.6 0.84 1.8E-05 44.8 23.5 207 76-308 131-352 (360)
389 TIGR00419 tim triosephosphate 96.6 0.029 6.3E-07 50.8 11.2 121 159-284 73-203 (205)
390 TIGR00126 deoC deoxyribose-pho 96.6 0.093 2E-06 47.7 14.4 27 250-276 175-201 (211)
391 TIGR01037 pyrD_sub1_fam dihydr 96.6 0.048 1E-06 51.6 13.1 133 48-194 143-290 (300)
392 cd02922 FCB2_FMN Flavocytochro 96.6 0.027 5.8E-07 54.8 11.5 47 239-286 202-248 (344)
393 TIGR00677 fadh2_euk methylenet 96.5 0.07 1.5E-06 50.5 14.0 194 56-280 53-261 (281)
394 PRK15108 biotin synthase; Prov 96.5 0.41 8.9E-06 46.5 19.5 185 76-283 78-291 (345)
395 cd04736 MDH_FMN Mandelate dehy 96.5 0.011 2.3E-07 58.0 8.5 46 240-286 226-271 (361)
396 PRK09432 metF 5,10-methylenete 96.5 0.2 4.4E-06 47.7 17.0 184 55-276 75-272 (296)
397 cd04739 DHOD_like Dihydroorota 96.5 0.043 9.3E-07 52.9 12.6 133 49-194 150-294 (325)
398 COG0113 HemB Delta-aminolevuli 96.5 0.56 1.2E-05 44.8 19.5 155 77-260 61-279 (330)
399 cd07944 DRE_TIM_HOA_like 4-hyd 96.5 0.49 1.1E-05 44.3 19.3 157 62-248 71-238 (266)
400 cd00945 Aldolase_Class_I Class 96.5 0.26 5.6E-06 42.6 16.4 93 62-174 48-149 (201)
401 PRK08508 biotin synthase; Prov 96.5 0.38 8.2E-06 45.3 18.5 183 75-284 41-255 (279)
402 COG0821 gcpE 1-hydroxy-2-methy 96.5 0.079 1.7E-06 51.1 13.8 103 74-207 33-138 (361)
403 PRK12581 oxaloacetate decarbox 96.5 0.41 8.9E-06 48.5 19.6 148 77-247 105-260 (468)
404 TIGR02660 nifV_homocitr homoci 96.5 0.69 1.5E-05 45.2 20.8 172 52-245 53-237 (365)
405 TIGR01304 IMP_DH_rel_2 IMP deh 96.5 0.059 1.3E-06 53.0 13.3 39 241-280 179-217 (369)
406 cd00959 DeoC 2-deoxyribose-5-p 96.4 0.26 5.7E-06 44.1 16.5 167 73-275 13-199 (203)
407 PRK11858 aksA trans-homoaconit 96.4 0.63 1.4E-05 45.8 20.4 151 80-246 78-241 (378)
408 PRK07259 dihydroorotate dehydr 96.4 0.031 6.8E-07 52.9 10.9 125 48-194 143-290 (301)
409 PRK00507 deoxyribose-phosphate 96.4 0.11 2.5E-06 47.4 14.1 37 240-276 167-205 (221)
410 PRK14040 oxaloacetate decarbox 96.4 0.39 8.6E-06 50.1 19.6 172 53-247 66-252 (593)
411 cd07939 DRE_TIM_NifV Streptomy 96.4 0.49 1.1E-05 43.9 18.5 153 81-248 73-237 (259)
412 PRK06256 biotin synthase; Vali 96.4 0.61 1.3E-05 44.7 19.7 186 76-284 93-305 (336)
413 cd07948 DRE_TIM_HCS Saccharomy 96.4 0.83 1.8E-05 42.7 20.1 153 81-247 75-238 (262)
414 PRK09283 delta-aminolevulinic 96.4 0.76 1.6E-05 44.2 19.8 150 77-255 59-270 (323)
415 TIGR00676 fadh2 5,10-methylene 96.4 0.2 4.4E-06 47.0 15.9 189 57-280 53-257 (272)
416 cd03174 DRE_TIM_metallolyase D 96.4 0.45 9.8E-06 43.5 18.0 181 48-248 51-245 (265)
417 TIGR00559 pdxJ pyridoxine 5'-p 96.3 0.71 1.5E-05 42.7 18.7 176 72-284 19-217 (237)
418 COG1856 Uncharacterized homolo 96.3 0.86 1.9E-05 42.0 18.9 176 77-276 42-249 (275)
419 cd00537 MTHFR Methylenetetrahy 96.3 0.16 3.5E-06 47.4 15.0 191 57-278 53-258 (274)
420 PRK12330 oxaloacetate decarbox 96.3 0.48 1.1E-05 48.4 19.3 169 54-247 67-254 (499)
421 COG3836 HpcH 2,4-dihydroxyhept 96.3 0.79 1.7E-05 42.4 18.7 196 52-284 6-241 (255)
422 TIGR00737 nifR3_yhdG putative 96.3 0.07 1.5E-06 51.1 12.7 104 49-174 118-222 (319)
423 PLN02411 12-oxophytodienoate r 96.3 0.14 3E-06 50.7 15.0 44 240-284 303-347 (391)
424 PLN02858 fructose-bisphosphate 96.3 0.98 2.1E-05 51.6 23.5 206 50-287 1102-1339(1378)
425 cd00384 ALAD_PBGS Porphobilino 96.3 0.84 1.8E-05 43.7 19.4 155 77-260 51-266 (314)
426 cd07945 DRE_TIM_CMS Leptospira 96.3 0.74 1.6E-05 43.5 19.2 155 81-248 78-246 (280)
427 cd07943 DRE_TIM_HOA 4-hydroxy- 96.3 0.72 1.6E-05 42.8 19.0 156 63-247 75-239 (263)
428 PRK15492 triosephosphate isome 96.3 0.069 1.5E-06 50.1 12.0 123 159-284 86-246 (260)
429 PF04476 DUF556: Protein of un 96.3 0.34 7.3E-06 44.7 16.1 159 70-249 58-234 (235)
430 COG5564 Predicted TIM-barrel e 96.2 0.2 4.4E-06 45.9 14.3 193 81-287 32-260 (276)
431 PRK00366 ispG 4-hydroxy-3-meth 96.2 0.13 2.9E-06 50.0 14.1 99 72-201 37-139 (360)
432 cd04740 DHOD_1B_like Dihydroor 96.2 0.064 1.4E-06 50.5 11.9 136 48-194 140-287 (296)
433 PRK09490 metH B12-dependent me 96.2 0.22 4.8E-06 55.8 17.6 182 75-281 382-603 (1229)
434 PRK13384 delta-aminolevulinic 96.2 1 2.2E-05 43.3 19.7 154 77-260 61-275 (322)
435 PRK11320 prpB 2-methylisocitra 96.2 0.49 1.1E-05 45.1 17.7 134 51-197 67-207 (292)
436 cd02810 DHOD_DHPD_FMN Dihydroo 96.2 0.13 2.8E-06 48.2 13.7 90 74-175 108-197 (289)
437 PRK13803 bifunctional phosphor 96.2 0.82 1.8E-05 47.9 20.7 193 79-308 12-214 (610)
438 PTZ00314 inosine-5'-monophosph 96.2 0.54 1.2E-05 48.0 18.9 41 238-279 269-310 (495)
439 cd04728 ThiG Thiazole synthase 96.2 0.045 9.7E-07 50.8 10.0 70 81-174 135-204 (248)
440 PRK07565 dihydroorotate dehydr 96.2 0.12 2.7E-06 49.7 13.6 113 49-174 152-268 (334)
441 TIGR00736 nifR3_rel_arch TIM-b 96.1 0.085 1.8E-06 48.6 11.8 98 48-174 121-220 (231)
442 TIGR00612 ispG_gcpE 1-hydroxy- 96.1 0.14 3E-06 49.6 13.5 97 73-200 30-129 (346)
443 PRK00208 thiG thiazole synthas 96.1 0.087 1.9E-06 49.0 11.7 70 81-174 135-204 (250)
444 PF00121 TIM: Triosephosphate 96.1 0.075 1.6E-06 49.3 11.4 124 158-284 75-236 (244)
445 PRK05286 dihydroorotate dehydr 96.1 0.047 1E-06 53.0 10.5 105 49-173 193-317 (344)
446 PRK05437 isopentenyl pyrophosp 96.1 0.15 3.3E-06 49.7 13.9 42 238-280 174-218 (352)
447 TIGR03217 4OH_2_O_val_ald 4-hy 96.1 0.6 1.3E-05 45.2 18.0 166 46-246 63-241 (333)
448 PF01645 Glu_synthase: Conserv 96.1 0.054 1.2E-06 53.2 10.6 107 179-287 188-311 (368)
449 PRK08195 4-hyroxy-2-oxovalerat 96.0 0.82 1.8E-05 44.4 18.7 152 63-246 78-242 (337)
450 PRK10550 tRNA-dihydrouridine s 96.0 0.1 2.2E-06 50.1 12.3 106 48-174 117-224 (312)
451 cd00408 DHDPS-like Dihydrodipi 96.0 0.47 1E-05 44.2 16.5 99 66-185 68-170 (281)
452 COG0284 PyrF Orotidine-5'-phos 96.0 1 2.3E-05 41.7 18.4 176 70-285 17-220 (240)
453 PLN02540 methylenetetrahydrofo 96.0 0.18 3.9E-06 52.2 14.5 187 62-276 58-265 (565)
454 TIGR02317 prpB methylisocitrat 96.0 0.86 1.9E-05 43.3 18.0 137 47-196 58-201 (285)
455 cd00952 CHBPH_aldolase Trans-o 96.0 0.64 1.4E-05 44.4 17.4 130 72-220 24-167 (309)
456 PF02548 Pantoate_transf: Keto 96.0 0.87 1.9E-05 42.8 17.6 209 53-309 7-255 (261)
457 PRK07094 biotin synthase; Prov 95.9 0.83 1.8E-05 43.5 18.0 180 75-278 71-279 (323)
458 cd00003 PNPsynthase Pyridoxine 95.9 1.4 3E-05 40.7 18.5 176 72-284 19-216 (234)
459 TIGR02090 LEU1_arch isopropylm 95.9 1.9 4.1E-05 42.2 21.0 150 80-246 74-237 (363)
460 PRK05567 inosine 5'-monophosph 95.9 0.64 1.4E-05 47.3 17.9 67 205-279 230-297 (486)
461 PRK12331 oxaloacetate decarbox 95.9 1.4 3E-05 44.6 19.8 145 77-247 96-251 (448)
462 PRK14041 oxaloacetate decarbox 95.8 1.3 2.9E-05 44.9 19.8 144 79-247 97-250 (467)
463 cd02809 alpha_hydroxyacid_oxid 95.8 0.11 2.3E-06 49.4 11.3 41 239-280 161-201 (299)
464 TIGR02082 metH 5-methyltetrahy 95.8 0.66 1.4E-05 52.1 18.9 179 75-282 366-588 (1178)
465 COG0502 BioB Biotin synthase a 95.8 0.47 1E-05 46.0 15.6 178 77-280 87-295 (335)
466 PF01729 QRPTase_C: Quinolinat 95.8 0.076 1.7E-06 46.6 9.3 140 129-284 7-160 (169)
467 TIGR00640 acid_CoA_mut_C methy 95.8 0.13 2.7E-06 43.3 10.3 95 183-284 21-118 (132)
468 PRK08673 3-deoxy-7-phosphohept 95.8 2.1 4.6E-05 41.6 20.7 204 76-308 106-327 (335)
469 PRK09282 pyruvate carboxylase 95.7 0.98 2.1E-05 47.2 18.9 145 77-247 96-251 (592)
470 TIGR01303 IMP_DH_rel_1 IMP deh 95.7 0.14 3.1E-06 51.9 12.1 67 205-279 227-294 (475)
471 cd02811 IDI-2_FMN Isopentenyl- 95.7 0.24 5.3E-06 47.7 13.3 41 239-280 167-210 (326)
472 TIGR01108 oadA oxaloacetate de 95.7 1.2 2.7E-05 46.3 19.2 145 77-247 91-246 (582)
473 TIGR01521 FruBisAldo_II_B fruc 95.7 2.4 5.1E-05 41.5 25.1 210 50-286 4-282 (347)
474 PRK14566 triosephosphate isome 95.7 0.19 4.2E-06 47.1 12.1 123 159-284 87-246 (260)
475 cd08556 GDPD Glycerophosphodie 95.7 1.2 2.5E-05 38.2 16.4 173 77-277 13-186 (189)
476 KOG1436 Dihydroorotate dehydro 95.7 0.082 1.8E-06 50.8 9.6 163 77-284 193-365 (398)
477 PRK10415 tRNA-dihydrouridine s 95.6 0.15 3.2E-06 49.1 11.6 105 48-174 119-224 (321)
478 cd02071 MM_CoA_mut_B12_BD meth 95.6 0.14 2.9E-06 42.2 9.8 90 183-279 18-109 (122)
479 cd07941 DRE_TIM_LeuA3 Desulfob 95.6 2 4.4E-05 40.2 18.9 170 63-246 63-248 (273)
480 cd04824 eu_ALAD_PBGS_cysteine_ 95.6 2.3 5E-05 40.9 19.9 155 77-260 51-272 (320)
481 PRK13399 fructose-1,6-bisphosp 95.6 2.5 5.5E-05 41.3 24.3 211 49-286 5-284 (347)
482 TIGR01235 pyruv_carbox pyruvat 95.6 0.36 7.9E-06 54.0 15.7 182 74-276 550-761 (1143)
483 PRK04165 acetyl-CoA decarbonyl 95.6 1.8 4E-05 43.7 19.3 180 64-280 92-298 (450)
484 TIGR00674 dapA dihydrodipicoli 95.5 0.32 6.9E-06 45.7 13.3 23 178-200 79-101 (285)
485 PRK15452 putative protease; Pr 95.5 0.36 7.8E-06 48.6 14.2 125 68-214 7-155 (443)
486 cd02067 B12-binding B12 bindin 95.5 0.17 3.7E-06 41.0 9.8 89 182-278 17-108 (119)
487 PRK05848 nicotinate-nucleotide 95.5 0.92 2E-05 42.9 16.0 132 140-284 117-262 (273)
488 cd00453 FTBP_aldolase_II Fruct 95.4 2.8 6.1E-05 40.8 24.8 211 52-286 3-279 (340)
489 cd02911 arch_FMN Archeal FMN-b 95.4 0.35 7.6E-06 44.4 12.8 95 48-174 126-220 (233)
490 PF00682 HMGL-like: HMGL-like 95.4 0.81 1.7E-05 41.5 15.0 158 73-246 63-234 (237)
491 PRK12999 pyruvate carboxylase; 95.4 1.6 3.5E-05 49.0 20.0 147 78-247 628-788 (1146)
492 PRK14042 pyruvate carboxylase 95.4 1.9 4.2E-05 45.0 19.4 160 63-247 76-251 (596)
493 TIGR00433 bioB biotin syntheta 95.4 2.4 5.2E-05 39.6 20.4 186 77-284 65-278 (296)
494 PLN02274 inosine-5'-monophosph 95.4 0.21 4.5E-06 51.1 12.2 67 205-279 250-317 (505)
495 cd08579 GDPD_memb_like Glycero 95.3 1.1 2.4E-05 40.1 15.7 183 77-277 13-216 (220)
496 cd04823 ALAD_PBGS_aspartate_ri 95.3 2.8 6.1E-05 40.3 19.4 154 77-260 54-271 (320)
497 COG0826 Collagenase and relate 95.3 0.45 9.7E-06 46.5 13.9 83 79-177 15-102 (347)
498 PRK05265 pyridoxine 5'-phospha 95.3 2.4 5.1E-05 39.3 18.9 175 72-284 22-218 (239)
499 PRK07807 inosine 5-monophospha 95.3 2.8 6.2E-05 42.7 20.0 66 206-279 230-296 (479)
500 cd02072 Glm_B12_BD B12 binding 95.3 0.29 6.4E-06 41.1 10.7 88 184-277 19-113 (128)
No 1
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-76 Score=542.54 Aligned_cols=262 Identities=49% Similarity=0.844 Sum_probs=252.8
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
|+|+++.|+++++++|++||+|+|+|||+++++.++++.|.++|+|+||||+|||||+||||+||+|+.|||++|+++++
T Consensus 1 m~r~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~ 80 (265)
T COG0159 1 MSRLDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLED 80 (265)
T ss_pred CchHHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 127 ILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 127 ~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
+|++++++|++ .++|+++|+||||++++|+++|++.|+++|+||+|+||||+||..++.+.+++|||+.|++++|+|++
T Consensus 81 ~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~ 160 (265)
T COG0159 81 TLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPD 160 (265)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 99999999965 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+|++++++.++||+|++|++|+||.+......+.++++++|+.+++|+++|||||++||++++.++ ||||||||||++.
T Consensus 161 ~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~~ 239 (265)
T COG0159 161 ERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVKI 239 (265)
T ss_pred HHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHHH
Confidence 999999999999999999999999998876668999999999999999999999999999999999 9999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHhhC
Q 021527 286 LGEAQSPEEGLKELEKFAKSLKSAL 310 (311)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (311)
++++.+ ++.++++.+|+++|++++
T Consensus 240 i~~~~~-~~~~~~~~~l~~~l~~~~ 263 (265)
T COG0159 240 IEEGLD-EEALEELRALVKELKAAL 263 (265)
T ss_pred HHhccc-hhhHHHHHHHHHHHHHHh
Confidence 987533 567999999999999875
No 2
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=100.00 E-value=2.5e-74 Score=535.09 Aligned_cols=261 Identities=45% Similarity=0.857 Sum_probs=249.8
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
|++|++.|+++ ++|++||+|+++||||++++.++++.|+++|||+||||+|||||+||||+||+|+.|||++|+++++
T Consensus 1 M~~i~~~f~~~--~~~~ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~ 78 (263)
T CHL00200 1 MNTISNVFEKL--DKQCALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNK 78 (263)
T ss_pred CchHHHHHHHh--cCCCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHH
Confidence 78899999876 4788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHH
Q 021527 127 ILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTD 206 (311)
Q Consensus 127 ~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~e 206 (311)
+|++++++|++.++|+++|+|||++++||.++|++.|+++|+||+++||||+||..++.+.|+++|++.|++++|+|+++
T Consensus 79 ~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~e 158 (263)
T CHL00200 79 ILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKS 158 (263)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
|++.+++.++||+|+||..|+||.+..++..+.++++++|+.+++|++|||||+++||++++.++|||||||||++++.+
T Consensus 159 ri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i 238 (263)
T CHL00200 159 RIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQIL 238 (263)
T ss_pred HHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHH
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHhhC
Q 021527 287 GEAQSPEEGLKELEKFAKSLKSAL 310 (311)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~ 310 (311)
++ .+.++.++++.+|+++++.+.
T Consensus 239 ~~-~~~~~~~~~~~~~~~~~~~~~ 261 (263)
T CHL00200 239 LG-SSPEKGLDQLSEFCKVAKKSI 261 (263)
T ss_pred Hh-cChhhHHHHHHHHHHHHHHHh
Confidence 74 234567899999999998764
No 3
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=100.00 E-value=7.6e-75 Score=536.26 Aligned_cols=257 Identities=49% Similarity=0.873 Sum_probs=236.8
Q ss_pred HHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 021527 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKE 133 (311)
Q Consensus 54 f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ 133 (311)
|+++|+++|++||+|+++||||++++.++++.|+++|+|+||||+|||||+||||+||+|+.|||++|++++++|+++++
T Consensus 1 f~~lk~~~~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ 80 (259)
T PF00290_consen 1 FAELKKEGRKALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKE 80 (259)
T ss_dssp HHHHHHTTBTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred ChhHHhCCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh-ccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHH
Q 021527 134 VV-PQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIV 212 (311)
Q Consensus 134 ir-~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~ 212 (311)
+| +..++|+++|+|||++++||.++|++.|+++|+||+|+||||+||..++++.|+++|++.|++++|+|+++|+++++
T Consensus 81 ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~ 160 (259)
T PF00290_consen 81 IRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIA 160 (259)
T ss_dssp HHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHH
T ss_pred HhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH
Confidence 99 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCC-
Q 021527 213 EASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQS- 291 (311)
Q Consensus 213 ~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~- 291 (311)
+.+.||+|++|+.|+||.+..++..+.++++++|+.+++||++||||+++||++++. .|||||||||+|++.+++...
T Consensus 161 ~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~~~ 239 (259)
T PF00290_consen 161 KQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENGDD 239 (259)
T ss_dssp HH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTCCH
T ss_pred HhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHcccc
Confidence 999999999999999999998888899999999999999999999999999999999 779999999999999986433
Q ss_pred chhHHHHHHHHHHHHHhhCC
Q 021527 292 PEEGLKELEKFAKSLKSALP 311 (311)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~ 311 (311)
.+..++++.+++++|+.+++
T Consensus 240 ~~~~~~~~~~~~~~lk~~~~ 259 (259)
T PF00290_consen 240 AEKFLKELKEFVRELKEATK 259 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 46679999999999998864
No 4
>PLN02591 tryptophan synthase
Probab=100.00 E-value=7.8e-73 Score=521.25 Aligned_cols=250 Identities=78% Similarity=1.236 Sum_probs=240.2
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
+++||+|+++||||++++.++++.|+++|||+||||+|||||+||||+||+|+.|||++|++++++|++++++|++.++|
T Consensus 1 ~~~li~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p 80 (250)
T PLN02591 1 KVAFIPYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCP 80 (250)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
+++|+|||++++||.++|+++|+++|+||+|+||||+||..++++.++++|++.|++++|+|+++|++++++.+.||+|+
T Consensus 81 ~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~ 160 (250)
T PLN02591 81 IVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYL 160 (250)
T ss_pred EEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHH
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~ 301 (311)
+|+.|+||.++..++.+.++++++|+.+++||++||||+++||++++.++|||||||||+|++.+++..++++.++++.+
T Consensus 161 Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i~~~~~~~~~~~~~~~ 240 (250)
T PLN02591 161 VSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKALGEAKSPEEGLKRLEK 240 (250)
T ss_pred eeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhhhhccChhHHHHHHHH
Confidence 99999999999888889999999999999999999999999999999999999999999999999764345567889999
Q ss_pred HHHHHHhhCC
Q 021527 302 FAKSLKSALP 311 (311)
Q Consensus 302 ~~~~l~~~~~ 311 (311)
|+++|+.+++
T Consensus 241 ~~~~l~~~~~ 250 (250)
T PLN02591 241 LAKSLKAALP 250 (250)
T ss_pred HHHHHHhhcC
Confidence 9999998764
No 5
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=100.00 E-value=8.8e-72 Score=488.48 Aligned_cols=262 Identities=55% Similarity=0.911 Sum_probs=248.4
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
..|++.|.++|++||.+|++|+|+||||.+++.++++.|+++|+|+||||+|||||+||||.||+++.+||.+|++++++
T Consensus 3 eql~~TFa~aK~enknaLvtfiTaG~P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i 82 (268)
T KOG4175|consen 3 EQLSETFARAKSENKNALVTFITAGDPDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSI 82 (268)
T ss_pred hHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc-CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHH
Q 021527 128 LSMLKEVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTD 206 (311)
Q Consensus 128 ~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~e 206 (311)
++++++.|.+ +.+||++|+||||+++||.++|++.++++|++|+|++|+|+||+..++++|+++|+.+|++++|+|+++
T Consensus 83 ~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtde 162 (268)
T KOG4175|consen 83 IEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDE 162 (268)
T ss_pred HHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHH
Confidence 9999999988 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
|++.+++.+++|||+||++|+||.+...+..+.++++|+|+.+ +.|+.||||||++||.+++.++ ||||||||++++.
T Consensus 163 Rmell~~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv~l 241 (268)
T KOG4175|consen 163 RMELLVEAADSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIVKL 241 (268)
T ss_pred HHHHHHHhhcceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCCceeEeeccCCHHHHHhhhhh-ccceEecHHHHHH
Confidence 9999999999999999999999999999999999999999998 8999999999999999999999 9999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHhhC
Q 021527 286 LGEAQSPEEGLKELEKFAKSLKSAL 310 (311)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (311)
+.++..++....+.+=|.+.++.++
T Consensus 242 ~g~ae~g~~~~v~~Ey~~~~lk~a~ 266 (268)
T KOG4175|consen 242 LGEAESGEQGLVELEYFTKSLKSAL 266 (268)
T ss_pred hccCCCccchhHHHHHHHHHhhccc
Confidence 9887655555555555555566554
No 6
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=100.00 E-value=7.7e-70 Score=503.98 Aligned_cols=254 Identities=49% Similarity=0.852 Sum_probs=242.7
Q ss_pred HHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHH
Q 021527 53 TFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132 (311)
Q Consensus 53 ~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~ 132 (311)
.|+++++++|++||+|+++||||++++.++++.|+++|||+||||+|||||+||||+||+|+.|||++|++++++|++++
T Consensus 2 ~~~~~~~~~~~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~ 81 (258)
T PRK13111 2 LFAALKAEGRKALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVR 81 (258)
T ss_pred hhHHHHhcCCccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh-ccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHH
Q 021527 133 EVV-PQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAI 211 (311)
Q Consensus 133 ~ir-~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i 211 (311)
++| +..++|+++|+|||++++||+++|++.|+++|+||+|+||||+||..++.+.++++|++.|++++|+|+++|++.+
T Consensus 82 ~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i 161 (258)
T PRK13111 82 EIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKI 161 (258)
T ss_pred HHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH
Confidence 999 5589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCC
Q 021527 212 VEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQS 291 (311)
Q Consensus 212 ~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~ 291 (311)
++.+.||||++++.|+||.++..+..+.++++++|+.+++|+++||||++++|++++.++ ||||||||+|++.+++.
T Consensus 162 ~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~~~~~-- 238 (258)
T PRK13111 162 ASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKIIEEN-- 238 (258)
T ss_pred HHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHHHHhc--
Confidence 999999999999999999988888889999999999999999999999999999999987 99999999999999752
Q ss_pred chhHHHHHHHHHHHHHhhC
Q 021527 292 PEEGLKELEKFAKSLKSAL 310 (311)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~ 310 (311)
. ..++++.+|++++++++
T Consensus 239 ~-~~~~~~~~~~~~l~~~~ 256 (258)
T PRK13111 239 P-EALEALAAFVKELKAAL 256 (258)
T ss_pred c-hHHHHHHHHHHHHHHHh
Confidence 1 56889999999998765
No 7
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=100.00 E-value=3e-68 Score=493.31 Aligned_cols=253 Identities=47% Similarity=0.808 Sum_probs=239.3
Q ss_pred HHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 55 TRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 55 ~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
+++++++|++||+|+++||||++++.+++++|+++|||+||||+|||||+||||+||+|+.|||++|++++++|++++++
T Consensus 2 ~~~~~~~~~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~i 81 (256)
T TIGR00262 2 ETLKQRGEGAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKV 81 (256)
T ss_pred chhhhcCCceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcc-CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHH
Q 021527 135 VPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVE 213 (311)
Q Consensus 135 r~~-~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~ 213 (311)
|++ .++|+++|+|+||+++||.++|++.++++|+||+++||+|+||..++.+.++++|++.+++++|+|+.+|++.+++
T Consensus 82 r~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~ 161 (256)
T TIGR00262 82 RQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAE 161 (256)
T ss_pred HhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHH
Confidence 977 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcC-Cc
Q 021527 214 ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQ-SP 292 (311)
Q Consensus 214 ~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~-~~ 292 (311)
.+.||+|++|+.|+||.+..+++++.++++++|+.+++||+|||||+|+||++++.++|||||||||++++.+++.. ++
T Consensus 162 ~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~~~~~~~ 241 (256)
T TIGR00262 162 KSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKIIEENLNTP 241 (256)
T ss_pred hCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhccCCH
Confidence 99999999999999999877888899999999999999999999999999999999999999999999999997631 34
Q ss_pred hhHHHHHHHHHHHHH
Q 021527 293 EEGLKELEKFAKSLK 307 (311)
Q Consensus 293 ~~~~~~~~~~~~~l~ 307 (311)
++.++.+.+|+++|+
T Consensus 242 ~~~~~~i~~~~~~l~ 256 (256)
T TIGR00262 242 EKMLQALEEFVQNLK 256 (256)
T ss_pred HHHHHHHHHHHHHhC
Confidence 566788888888764
No 8
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=100.00 E-value=4.8e-59 Score=428.53 Aligned_cols=242 Identities=50% Similarity=0.893 Sum_probs=227.8
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIA 143 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPii 143 (311)
+||+|+|+|||+.+.+.+.++.|+++|||+||+|+|||||++|||+||+++.|||++|++++.++++++++|+..++|++
T Consensus 1 ~li~y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~ 80 (242)
T cd04724 1 ALIPYITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIV 80 (242)
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
+|+|+||++++|+++|++.++++|+||+++||+|+||..++.+.++++|++.+++++|+|+.+|++.+.+.+.+|+|++|
T Consensus 81 lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s 160 (242)
T cd04724 81 LMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVS 160 (242)
T ss_pred EEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHH
Q 021527 224 SIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFA 303 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~ 303 (311)
+.|+||.++..++.+.+.++++|+.+++||+|||||+++|+++++.++ |||+||||+|++.+++.. .+...+.+.+|+
T Consensus 161 ~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~~~~~-~~~~~~~~~~~~ 238 (242)
T cd04724 161 RTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKIIEEGG-EEEALEALKELA 238 (242)
T ss_pred CCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHHHHhcc-chhHHHHHHHHH
Confidence 999999988777888899999999999999999999999999999999 999999999999997632 234566677777
Q ss_pred HHHH
Q 021527 304 KSLK 307 (311)
Q Consensus 304 ~~l~ 307 (311)
+.++
T Consensus 239 ~~~~ 242 (242)
T cd04724 239 ESLK 242 (242)
T ss_pred HHhC
Confidence 6653
No 9
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=100.00 E-value=8.3e-51 Score=374.14 Aligned_cols=235 Identities=30% Similarity=0.521 Sum_probs=217.4
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
.|++||+|+++|||+.+++.++++.++++ +|+||||+|||||++|||+||+++.+|+++|+ +++++++|+.+++
T Consensus 2 ~~~~~i~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~-----~~~v~~vr~~~~~ 75 (244)
T PRK13125 2 MRPGLVVYLTAGYPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDI-----WPLLEEVRKDVSV 75 (244)
T ss_pred CCcceEEEEeCCCCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCc-----HHHHHHHhccCCC
Confidence 36889999999999999999999999998 99999999999999999999999999999998 7899999988999
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCCh---hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL---EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~---ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
|+++|+|+|+ +.++.++|++.++++|+||+++||+|+ ++..++.+.++++|++.++.++|+|+.+|++.+.+..++
T Consensus 76 Pl~lM~y~n~-~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~ 154 (244)
T PRK13125 76 PIILMTYLED-YVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPL 154 (244)
T ss_pred CEEEEEecch-hhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCC
Confidence 9999999999 588999999999999999999999996 578889999999999999999999999999999999999
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHH
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL 296 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~ 296 (311)
|+|+ +++|+||. .+++++.+.++++|+.+ +.|+++||||++++|++++.+.||||+||||++++.+++. ..
T Consensus 155 ~l~m-sv~~~~g~--~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~~~~~~-----~~ 226 (244)
T PRK13125 155 FIYY-GLRPATGV--PLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIEELEKN-----GV 226 (244)
T ss_pred EEEE-EeCCCCCC--CchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHHHHHhc-----CH
Confidence 9998 88999987 47778888999999988 5899999999999999999999999999999999988641 26
Q ss_pred HHHHHHHHHHHhhC
Q 021527 297 KELEKFAKSLKSAL 310 (311)
Q Consensus 297 ~~~~~~~~~l~~~~ 310 (311)
+++.+++++++.++
T Consensus 227 ~~~~~~~~~~~~~~ 240 (244)
T PRK13125 227 ESALNLLKKIRGAL 240 (244)
T ss_pred HHHHHHHHHHHHHh
Confidence 67788888887664
No 10
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=99.92 E-value=2.9e-23 Score=185.16 Aligned_cols=183 Identities=20% Similarity=0.297 Sum_probs=150.6
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcE--EEEecCcch
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPI--ALFTYYNPI 151 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPi--ilm~Y~n~i 151 (311)
.|.+.+.+.++.+.++|+|.||++ ++||++++... ..++.++++++..+.|+ .+|+|
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~------~~Dg~~~~~~~-----------~~~~~v~~i~~~~~~~v~v~lm~~---- 66 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVD------VMDGHFVPNLT-----------FGPPVLEALRKYTDLPIDVHLMVE---- 66 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc------CCCCCCCCCcc-----------cCHHHHHHHHhcCCCcEEEEeeeC----
Confidence 455789999999999999999998 99999988321 34678999987777884 57765
Q ss_pred hccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEec-CCccCC
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSS-IGVTGA 230 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~-~G~TG~ 230 (311)
+.++|++.+.++|+||+++++.+.++.....+.++++|++.++.++++++.++++++.... .++|+++. .|.||.
T Consensus 67 ---~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~-d~i~~~~~~~g~tg~ 142 (210)
T TIGR01163 67 ---NPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDV-DLVLLMSVNPGFGGQ 142 (210)
T ss_pred ---CHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhC-CEEEEEEEcCCCCcc
Confidence 4678999999999999999998877777888999999999999999999999988886554 44677765 356663
Q ss_pred CCCCCchHHHHHHHHhhcCC-----CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 231 RASISGHVQTLLREIKESST-----KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 231 ~~~~~~~~~~~l~~vk~~~~-----~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..++...+.++++++.++ +|++++|||+ +++++++.+.|||++||||++++
T Consensus 143 --~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~ 198 (210)
T TIGR01163 143 --KFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFG 198 (210)
T ss_pred --cccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 345555677888877653 7999999996 79999999999999999999996
No 11
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=99.89 E-value=1.4e-21 Score=175.81 Aligned_cols=184 Identities=20% Similarity=0.319 Sum_probs=145.9
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--EEEEecCcc
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--IALFTYYNP 150 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--iilm~Y~n~ 150 (311)
..|...+.+.++.+.++|+|.||++ .+||++++... -.++.++++++..+.| +.+|+|
T Consensus 12 ~~~~~~~~~~~~~~~~~G~~~i~l~------~~d~~~~~~~~-----------~~~~~~~~i~~~~~~~~~v~l~v~--- 71 (220)
T PRK05581 12 SADFARLGEEVKAVEAAGADWIHVD------VMDGHFVPNLT-----------IGPPVVEAIRKVTKLPLDVHLMVE--- 71 (220)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEe------CccCCcCCCcC-----------cCHHHHHHHHhcCCCcEEEEeeeC---
Confidence 3444678999999999999999998 77887765211 1256778887665444 557765
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEec-CCccC
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSS-IGVTG 229 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~-~G~TG 229 (311)
+.++|++.+.++|+||+++++.+.++..+..+.++++|+...+.+.|+++.++++.+....+ |+|+++. .|+||
T Consensus 72 ----d~~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d-~i~~~~~~~g~tg 146 (220)
T PRK05581 72 ----NPDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLD-LVLLMSVNPGFGG 146 (220)
T ss_pred ----CHHHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCC-EEEEEEECCCCCc
Confidence 67889999999999999999998877778889999999999998888888899888766555 8888875 45666
Q ss_pred CCCCCCchHHHHHHHHhhcCC-----CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 230 ARASISGHVQTLLREIKESST-----KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~~~~-----~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. ...+...+.++++|+.++ .+++++|||+ ++++.++.++|+|+|||||+|++
T Consensus 147 ~--~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 147 Q--KFIPEVLEKIRELRKLIDERGLDILIEVDGGIN-ADNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred c--cccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEChhhhC
Confidence 3 445556677888877653 3477999998 59999999999999999999997
No 12
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=99.87 E-value=1.6e-20 Score=167.16 Aligned_cols=183 Identities=20% Similarity=0.291 Sum_probs=144.3
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEE--EEecCcchh
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIA--LFTYYNPIL 152 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPii--lm~Y~n~i~ 152 (311)
|.....+.++.+.++|+|+||++ .+||++++... -.++.++++++..+.|+. +|++ |
T Consensus 10 d~~~~~~~~~~~~~~G~~~i~l~------~~d~~~~~~~~-----------~~~~~~~~i~~~~~~~~~v~l~~~-d--- 68 (211)
T cd00429 10 DFANLGEELKRLEEAGADWIHID------VMDGHFVPNLT-----------FGPPVVKALRKHTDLPLDVHLMVE-N--- 68 (211)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe------cccCCCCCccc-----------cCHHHHHHHHhhCCCcEEEEeeeC-C---
Confidence 44667899999999999999997 66776554221 114577888866556653 4443 4
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecC-CccCCC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSI-GVTGAR 231 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~-G~TG~~ 231 (311)
..+|++.+.++|+||+++++.+.++..+..+.++++|+..++.+.|+++.++++++... .+++|+++.. |.||.
T Consensus 69 ---~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~d~i~~~~~~~g~tg~- 143 (211)
T cd00429 69 ---PERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDE-VDLVLVMSVNPGFGGQ- 143 (211)
T ss_pred ---HHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhh-CCEEEEEEECCCCCCc-
Confidence 36789999999999999999988787888999999999999988888888888887554 5678887764 55553
Q ss_pred CCCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 232 ASISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 232 ~~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
..++...+.++++|+.+ ++|++++|||+ ++++.++.+.||||+||||++++.
T Consensus 144 -~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~-~env~~~~~~gad~iivgsai~~~ 200 (211)
T cd00429 144 -KFIPEVLEKIRKLRELIPENNLNLLIEVDGGIN-LETIPLLAEAGADVLVAGSALFGS 200 (211)
T ss_pred -ccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEECHHHhCC
Confidence 45556667888888876 48999999998 699999999999999999999974
No 13
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.86 E-value=4.2e-20 Score=167.31 Aligned_cols=183 Identities=19% Similarity=0.202 Sum_probs=144.9
Q ss_pred EEeCCCCCh--hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE
Q 021527 68 YITAGDPDL--STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 68 yi~~G~P~~--~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm 145 (311)
-.-+|+|=. +...++++++.++|+..++++ + ++.++++|+.+++|++.|
T Consensus 12 ~~~~~~~~~~~~~~~~~a~a~~~~G~~~~~~~---------~--------------------~~~i~~i~~~~~~Pil~~ 62 (221)
T PRK01130 12 QALPGEPLHSPEIMAAMALAAVQGGAVGIRAN---------G--------------------VEDIKAIRAVVDVPIIGI 62 (221)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCeEEEcC---------C--------------------HHHHHHHHHhCCCCEEEE
Confidence 445899976 568999999999999999984 1 347788888889999999
Q ss_pred ec---Cc-chhccCHHHHHHHHHHcCCcEEEecCCCh------hhHHHHHHHHHH-cCCCeEEEeCCCChHHHHHHHHHh
Q 021527 146 TY---YN-PILKRGVDNFMSTVRDIGIRGLVVPDVPL------EETESLQKEAMK-NKIELVLFTTPTTPTDRMKAIVEA 214 (311)
Q Consensus 146 ~Y---~n-~i~~~g~~~fi~~~~~aGadGviipDlp~------ee~~~~~~~~~~-~gi~~I~lisp~t~~eri~~i~~~ 214 (311)
+| +| +++.++..++++.++++|+| ++++|++. ++..++.+.+++ .++..+ .+.++.++++.. .
T Consensus 63 ~~~d~~~~~~~~~~~~~~v~~a~~aGad-~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi---~~v~t~ee~~~a--~ 136 (221)
T PRK01130 63 IKRDYPDSEVYITPTLKEVDALAAAGAD-IIALDATLRPRPDGETLAELVKRIKEYPGQLLM---ADCSTLEEGLAA--Q 136 (221)
T ss_pred EecCCCCCCceECCCHHHHHHHHHcCCC-EEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEE---EeCCCHHHHHHH--H
Confidence 98 67 67888888899999999999 77888764 677889999999 555433 444556776544 3
Q ss_pred CCceEEEEe-cCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 215 SEGFVYLVS-SIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 215 a~gfiY~vs-~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
..|+.|+.. ..|.|+..........++++++++.+++||+++|||++++++.++++.|||||+|||+|++.
T Consensus 137 ~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~ 208 (221)
T PRK01130 137 KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRP 208 (221)
T ss_pred HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCC
Confidence 467888854 45666654322333457899999988999999999999999999999999999999999984
No 14
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=99.83 E-value=7.8e-19 Score=162.32 Aligned_cols=213 Identities=23% Similarity=0.336 Sum_probs=146.9
Q ss_pred CccEEEEE----eCCCCCh--------hhHHHHHHHHHHCCCCEEEEcCCCCCCCCC--hHHHHHHHHHHHHcCCCHHHH
Q 021527 62 KVALIPYI----TAGDPDL--------STTAEALKLLDSCGSDIIELGVPYSDPLAD--GPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 62 ~~~li~yi----~~G~P~~--------~~~~e~~~~L~~~GaD~IElG~PfsDP~aD--Gp~Iq~a~~~Al~~G~~~~~~ 127 (311)
+|.+|+.+ +||+|.+ +..++.++.|+++|+|.|.+.+-++-||.. +|.+.+++.+
T Consensus 2 ~KpiIGmvHL~pLPGsp~~~~~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~----------- 70 (254)
T PF03437_consen 2 EKPIIGMVHLPPLPGSPRYDGSMEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMAR----------- 70 (254)
T ss_pred CCCEEEEEcCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHH-----------
Confidence 57888877 8999985 468899999999999999998888777764 6666666655
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCc--------EEEecCCCh-----hhHHHHHHHHHHcCCC
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR--------GLVVPDVPL-----EETESLQKEAMKNKIE 194 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGad--------GviipDlp~-----ee~~~~~~~~~~~gi~ 194 (311)
++.++++++++|+.+...+|.- ..-+..+..+|+| |..+.|..+ .|..++++.+... +.
T Consensus 71 --i~~~v~~~~~~p~GVnvL~nd~-----~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~-v~ 142 (254)
T PF03437_consen 71 --IAREVRREVSVPVGVNVLRNDP-----KAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGAD-VK 142 (254)
T ss_pred --HHHHHHHhCCCCEEeeeecCCC-----HHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCC-eE
Confidence 7888898899999998888632 2344556666665 233334322 3456666555433 33
Q ss_pred eEEEe--------CCCChHHHHHHHHHh--CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHH
Q 021527 195 LVLFT--------TPTTPTDRMKAIVEA--SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEH 264 (311)
Q Consensus 195 ~I~li--------sp~t~~eri~~i~~~--a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~ 264 (311)
...-+ .+.+.++..+...+. +++.+ +||..++.+++. +.++++|+.+++||++|.|++ +||
T Consensus 143 ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDavi-------VtG~~TG~~~~~-~~l~~vr~~~~~PVlvGSGvt-~~N 213 (254)
T PF03437_consen 143 ILADVHVKHSSPLATRDLEEAAKDAVERGGADAVI-------VTGKATGEPPDP-EKLKRVREAVPVPVLVGSGVT-PEN 213 (254)
T ss_pred EEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEE-------ECCcccCCCCCH-HHHHHHHhcCCCCEEEecCCC-HHH
Confidence 33222 222233444333232 23332 566666666654 569999999899999999996 899
Q ss_pred HHHHHHcCCcEEEEhhHhhchhhhcCCc--hhHHHHHHHHHHHHH
Q 021527 265 VQQVAGWGADGVIVGSAMVKLLGEAQSP--EEGLKELEKFAKSLK 307 (311)
Q Consensus 265 v~~v~~~GADGvIVGSaiv~~~~~~~~~--~~~~~~~~~~~~~l~ 307 (311)
+.++++. |||+||||.|.+- +.+ .-..+++++|++..+
T Consensus 214 i~~~l~~-ADG~IVGS~~K~~----G~~~n~VD~~Rv~~fm~~v~ 253 (254)
T PF03437_consen 214 IAEYLSY-ADGAIVGSYFKKD----GKWENPVDPERVRRFMEAVK 253 (254)
T ss_pred HHHHHHh-CCEEEEeeeeeeC----CEeCCcCCHHHHHHHHHHhh
Confidence 9999998 9999999999971 111 234678889988765
No 15
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=99.80 E-value=6.1e-18 Score=150.26 Aligned_cols=181 Identities=22% Similarity=0.197 Sum_probs=138.4
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNP 150 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~ 150 (311)
..|+.++..++++.|.++ ++++|+|.||. . ..| ++.++.+|++ .++|+++..+.++
T Consensus 8 d~~~~~~~~~~~~~l~~~-i~~ieig~~~~---------~-------~~g------~~~i~~i~~~~~~~~i~~~~~v~~ 64 (202)
T cd04726 8 DLLDLEEALELAKKVPDG-VDIIEAGTPLI---------K-------SEG------MEAVRALREAFPDKIIVADLKTAD 64 (202)
T ss_pred cCCCHHHHHHHHHHhhhc-CCEEEcCCHHH---------H-------HhC------HHHHHHHHHHCCCCEEEEEEEecc
Confidence 779999999999999999 99999998882 1 123 5678888876 5889988766553
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecCCChh-hHHHHHHHHHHcCCCeEE-EeCCCChHHHHHHHHHhCCceEEEEecCCcc
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPDVPLE-ETESLQKEAMKNKIELVL-FTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipDlp~e-e~~~~~~~~~~~gi~~I~-lisp~t~~eri~~i~~~a~gfiY~vs~~G~T 228 (311)
.. +.|++.+.++|+|++++++.+.. ...++.+.++++|+..+. +.+|.|+.++.+ ... .+..|+.-..+.+
T Consensus 65 ~~----~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~-~~~--~~~d~v~~~~~~~ 137 (202)
T cd04726 65 AG----ALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK-LLK--LGVDIVILHRGID 137 (202)
T ss_pred cc----HHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH-HHH--CCCCEEEEcCccc
Confidence 32 35678999999999999987653 467788999999998776 479999888765 333 3444543222333
Q ss_pred CCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 229 GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+...+ .+...+.++++++..++|+++++||+ ++++.++.+.|||++++||+|++
T Consensus 138 ~~~~~-~~~~~~~i~~~~~~~~~~i~~~GGI~-~~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 138 AQAAG-GWWPEDDLKKVKKLLGVKVAVAGGIT-PDTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred ccccC-CCCCHHHHHHHHhhcCCCEEEECCcC-HHHHHHHHhcCCCEEEEeehhcC
Confidence 33222 22334678888876789999999997 99999999999999999999987
No 16
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.80 E-value=1.3e-18 Score=157.38 Aligned_cols=187 Identities=20% Similarity=0.223 Sum_probs=133.9
Q ss_pred EEEcCCCCCCCCChHHHHHHHHHHHHcCCCHH--HHHHHHHHhhccCCCcEEE-E--ecCc-chhccCHHHHHHHHHHcC
Q 021527 94 IELGVPYSDPLADGPVIQAAATRSLARGTNFN--AILSMLKEVVPQMSCPIAL-F--TYYN-PILKRGVDNFMSTVRDIG 167 (311)
Q Consensus 94 IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~--~~~~~i~~ir~~~~iPiil-m--~Y~n-~i~~~g~~~fi~~~~~aG 167 (311)
+-...-..+|++|++.+++++++++++|.+.- ..++.++++|+.+++|++. + .|-+ .++......+++.+.++|
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~~~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aG 92 (219)
T cd04729 13 VSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRANGVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAG 92 (219)
T ss_pred EEccCCCCCCcCcHHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcC
Confidence 44455567888889999888888888887654 4567888888878999864 2 2211 111111134889999999
Q ss_pred CcEEEecCCCh------hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe-cCCccCCCCCCCchHHH
Q 021527 168 IRGLVVPDVPL------EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS-SIGVTGARASISGHVQT 240 (311)
Q Consensus 168 adGviipDlp~------ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs-~~G~TG~~~~~~~~~~~ 240 (311)
+|. ++.|.+. ++..++.+.++++| +..+++...+++++ ... ...|+.|+.. ..|.|+..........+
T Consensus 93 ad~-I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea-~~a--~~~G~d~i~~~~~g~t~~~~~~~~~~~~ 167 (219)
T cd04729 93 ADI-IALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEA-LNA--AKLGFDIIGTTLSGYTEETAKTEDPDFE 167 (219)
T ss_pred CCE-EEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHH-HHH--HHcCCCEEEccCccccccccCCCCCCHH
Confidence 995 5555432 36778888888888 55555566666554 332 3468888864 45666654322222347
Q ss_pred HHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 241 LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 241 ~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+++++++.+++|++++|||++++++.++++.|||||+|||+|++.
T Consensus 168 ~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~ 212 (219)
T cd04729 168 LLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGSAITRP 212 (219)
T ss_pred HHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhCh
Confidence 899999988999999999999999999999999999999999984
No 17
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=99.80 E-value=8.7e-18 Score=152.84 Aligned_cols=197 Identities=16% Similarity=0.256 Sum_probs=151.7
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCc--EEEEecCcchh
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCP--IALFTYYNPIL 152 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iP--iilm~Y~n~i~ 152 (311)
.....+.++.|+++|+|++|++ ++||.++..-+ .| .++++.+|+. +++| +.||..
T Consensus 11 ~~~l~~~i~~l~~~g~~~lH~D------vmDG~Fvpn~t-----fg------~~~i~~i~~~~~~~~~dvHLMv~----- 68 (220)
T PRK08883 11 FARLGEDVEKVLAAGADVVHFD------VMDNHYVPNLT-----FG------APICKALRDYGITAPIDVHLMVK----- 68 (220)
T ss_pred HHHHHHHHHHHHHcCCCEEEEe------cccCcccCccc-----cC------HHHHHHHHHhCCCCCEEEEeccC-----
Confidence 3677899999999999999998 99998876532 12 4578888876 5677 788873
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARA 232 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~ 232 (311)
.+++|++.++++|+|-+.++=-..+...++.+.++++|++..+.++|.||.+.++.+....+.+ .++|+.+.+|.+.
T Consensus 69 --~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~v-lvMtV~PGfgGq~ 145 (220)
T PRK08883 69 --PVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLI-LLMSVNPGFGGQS 145 (220)
T ss_pred --CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeE-EEEEecCCCCCce
Confidence 4678999999999999988722123466788999999999999999999999988887755554 4467777777765
Q ss_pred CCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHH
Q 021527 233 SISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFA 303 (311)
Q Consensus 233 ~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~ 303 (311)
-++ ...+.++++|+.. ++|+.|.|||+ ++++.++.++|||++|+||++.+. .++.+.++++++.+
T Consensus 146 fi~-~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~----~d~~~~i~~l~~~~ 215 (220)
T PRK08883 146 FIP-HTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQ----PDYKAVIDEMRAEL 215 (220)
T ss_pred ecH-hHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCC----CCHHHHHHHHHHHH
Confidence 444 4456788888765 38999999998 899999999999999999999872 22344444444433
No 18
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=99.79 E-value=2.1e-17 Score=149.15 Aligned_cols=190 Identities=17% Similarity=0.216 Sum_probs=138.1
Q ss_pred CCccEEEEEeCCCCCh------hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 61 GKVALIPYITAGDPDL------STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~------~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
++..+|.=+=.-.|+. ....+.++.++++|+++|++- .++.+-+ ..++.++.+
T Consensus 9 ~~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~---~~~~~~~------------------g~~~~~~~i 67 (217)
T cd00331 9 GGLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVL---TEPKYFQ------------------GSLEDLRAV 67 (217)
T ss_pred CCceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEE---eCccccC------------------CCHHHHHHH
Confidence 4567777664434442 468999999999999999995 2322211 123577777
Q ss_pred hccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHH
Q 021527 135 VPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIV 212 (311)
Q Consensus 135 r~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~ 212 (311)
|+.+++||+++++.. . ..+++.+.++|+||+++ .|++.++..++.+.++..|++.+..+. + .+++++..
T Consensus 68 ~~~v~iPi~~~~~i~-----~-~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~--~-~~e~~~~~ 138 (217)
T cd00331 68 REAVSLPVLRKDFII-----D-PYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVH--D-EEELERAL 138 (217)
T ss_pred HHhcCCCEEECCeec-----C-HHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEEC--C-HHHHHHHH
Confidence 777899999876422 1 23899999999999995 578888888899999999999877664 3 45565554
Q ss_pred HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 213 EASEGFVYLVSSIGVTGARASISGHVQTLLREIKES--STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 213 ~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+ .|+.|+. .++.++.. ..+++ +.++++++. .++|++++|||++++|++++.++|||||+|||+|++..
T Consensus 139 ~--~g~~~i~-~t~~~~~~--~~~~~-~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~ 208 (217)
T cd00331 139 A--LGAKIIG-INNRDLKT--FEVDL-NTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAP 208 (217)
T ss_pred H--cCCCEEE-EeCCCccc--cCcCH-HHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCC
Confidence 4 3454442 11333332 23333 678888876 47899999999999999999999999999999999854
No 19
>PRK04302 triosephosphate isomerase; Provisional
Probab=99.78 E-value=9.6e-18 Score=152.51 Aligned_cols=153 Identities=22% Similarity=0.275 Sum_probs=118.5
Q ss_pred HHHHhhccCCCcEEEEecCcchhc-cCHHHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHcCCCeEEEeCCCCh
Q 021527 130 MLKEVVPQMSCPIALFTYYNPILK-RGVDNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKNKIELVLFTTPTTP 204 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y~n~i~~-~g~~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~gi~~I~lisp~t~ 204 (311)
.++.+++.+++|++...|...-+. +--+.|++.++++|+||++++| ++++|..++...++++|+..| ++.++
T Consensus 47 ~l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I-~~v~~-- 123 (223)
T PRK04302 47 DIRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESV-VCVNN-- 123 (223)
T ss_pred HHHHHHHhcCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEE-EEcCC--
Confidence 445555557899988866432111 2235689999999999999998 888999999999999999988 45554
Q ss_pred HHHHHHHHHhCCceEEEEec--CCcc-CCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 205 TDRMKAIVEASEGFVYLVSS--IGVT-GARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~--~G~T-G~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
.++++.+.+...+|+|+.+. .|++ +.+...+..+.+.++.+|+.. ++||++||||++++++..+.+.|+|||+|||
T Consensus 124 ~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGs 203 (223)
T PRK04302 124 PETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLAS 203 (223)
T ss_pred HHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEeh
Confidence 46777776677889999763 4432 322334556777888898864 7999999999999999999999999999999
Q ss_pred Hhhch
Q 021527 281 AMVKL 285 (311)
Q Consensus 281 aiv~~ 285 (311)
++++.
T Consensus 204 a~l~~ 208 (223)
T PRK04302 204 GVVKA 208 (223)
T ss_pred HHhCC
Confidence 99984
No 20
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=99.78 E-value=4.6e-17 Score=147.09 Aligned_cols=215 Identities=23% Similarity=0.368 Sum_probs=146.6
Q ss_pred CccEEEEE----eCCCC----Ch----hhHHHHHHHHHHCCCCEEEEcCCCCCCCCC--hHHHHHHHHHHHHcCCCHHHH
Q 021527 62 KVALIPYI----TAGDP----DL----STTAEALKLLDSCGSDIIELGVPYSDPLAD--GPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 62 ~~~li~yi----~~G~P----~~----~~~~e~~~~L~~~GaD~IElG~PfsDP~aD--Gp~Iq~a~~~Al~~G~~~~~~ 127 (311)
+|.+|+.+ .||+| ++ +..++.+++|+++|+|.|.+-+-|+-|+.- ||...+++.+
T Consensus 7 ~k~vIGvvHL~PLPGsp~~~~~~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~----------- 75 (263)
T COG0434 7 KKPVIGVVHLLPLPGSPYDAGSLEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAV----------- 75 (263)
T ss_pred CCceEEEEecCCCCCCccccCCHHHHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHH-----------
Confidence 56888766 89999 22 568899999999999999997766666662 6666666654
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCc--------EEEecCCCh-----hhHHHHHHHHHHcCCC
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR--------GLVVPDVPL-----EETESLQKEAMKNKIE 194 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGad--------GviipDlp~-----ee~~~~~~~~~~~gi~ 194 (311)
++++++.+.++|+.+...+|.- ..-+..+...|++ |+.+.|-.+ .|..+++..+. .+++
T Consensus 76 --iv~~v~r~v~iPvGvNVLrNd~-----vaA~~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~-~~v~ 147 (263)
T COG0434 76 --IVREVVREVSIPVGVNVLRNDA-----VAALAIAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLG-SRVK 147 (263)
T ss_pred --HHHHHHHhccccceeeeecccc-----HHHHHHHHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhcc-CCcE
Confidence 7889999999999999888731 2334456666666 223333222 35666776666 3454
Q ss_pred eEE---------EeCCCChHHHHHHHHHh--CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHH
Q 021527 195 LVL---------FTTPTTPTDRMKAIVEA--SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPE 263 (311)
Q Consensus 195 ~I~---------lisp~t~~eri~~i~~~--a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e 263 (311)
... +..+ +-++-.+...+. +++.| .||.+++-+++. +.|+.+|+.+++|+++|.|++ +|
T Consensus 148 vlADv~VKHa~~l~~~-~~~~~v~dtver~~aDaVI-------~tG~~TG~~~d~-~el~~a~~~~~~pvlvGSGv~-~e 217 (263)
T COG0434 148 VLADVHVKHAVHLGNR-SLEEAVKDTVERGLADAVI-------VTGSRTGSPPDL-EELKLAKEAVDTPVLVGSGVN-PE 217 (263)
T ss_pred EEeecchhcccccCCc-CHHHHHHHHHHccCCCEEE-------EecccCCCCCCH-HHHHHHHhccCCCEEEecCCC-HH
Confidence 332 2222 223444442232 33333 455555555654 569999999999999999997 89
Q ss_pred HHHHHHHcCCcEEEEhhHhhchhhhcCCc-hhHHHHHHHHHHHHHhh
Q 021527 264 HVQQVAGWGADGVIVGSAMVKLLGEAQSP-EEGLKELEKFAKSLKSA 309 (311)
Q Consensus 264 ~v~~v~~~GADGvIVGSaiv~~~~~~~~~-~~~~~~~~~~~~~l~~~ 309 (311)
|+.+++++ |||+||||.|++-=. .+ +-.++++++|++..+..
T Consensus 218 N~~~~l~~-adG~IvgT~lK~~G~---~~n~VD~~Rv~~~v~~a~~~ 260 (263)
T COG0434 218 NIEELLKI-ADGVIVGTSLKKGGV---TWNPVDLERVRRFVEAARRL 260 (263)
T ss_pred HHHHHHHH-cCceEEEEEEccCCE---ecCccCHHHHHHHHHHHHHh
Confidence 99999999 999999999998321 11 33467788888777654
No 21
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=99.77 E-value=9.8e-17 Score=148.54 Aligned_cols=216 Identities=19% Similarity=0.283 Sum_probs=150.0
Q ss_pred ccEEEEE----eCCCCCh--------hhHHHHHHHHHHCCCCEEEEcCCCCCCC--CChHHHHHHHHHHHHcCCCHHHHH
Q 021527 63 VALIPYI----TAGDPDL--------STTAEALKLLDSCGSDIIELGVPYSDPL--ADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 63 ~~li~yi----~~G~P~~--------~~~~e~~~~L~~~GaD~IElG~PfsDP~--aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
|.+|+.+ .||+|.+ +..++.++.|+++|+|.|.+.+-|+-|+ .-+|.+.+++.+
T Consensus 2 kpvIGmvHl~pLPGsP~~~~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~------------ 69 (257)
T TIGR00259 2 KPVIGMVHLLPLPGSPSFDDNLNAVIDKAWKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAV------------ 69 (257)
T ss_pred CCEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHH------------
Confidence 4577766 7899985 4688899999999999999999999998 568888877765
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCc--------EEEecCCCh-----hhHHHHHHHHHHcCCCe
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR--------GLVVPDVPL-----EETESLQKEAMKNKIEL 195 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGad--------GviipDlp~-----ee~~~~~~~~~~~gi~~ 195 (311)
++.++++++++|+.+...+|.- ..-+..++.+|+| |..+.|-.+ .|..+|++.+. .++..
T Consensus 70 -i~~~v~~~~~~p~GvnvL~nd~-----~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~-~~v~i 142 (257)
T TIGR00259 70 -IAGQLKSDVSIPLGINVLRNDA-----VAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLG-SEVKI 142 (257)
T ss_pred -HHHHHHHhcCCCeeeeeecCCC-----HHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcC-CCcEE
Confidence 7888999999999998877622 3345556667766 334444422 45677777766 34544
Q ss_pred EEEeC-----C---CChHHHHHHHHHh--CCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHH
Q 021527 196 VLFTT-----P---TTPTDRMKAIVEA--SEGFVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEH 264 (311)
Q Consensus 196 I~lis-----p---~t~~eri~~i~~~--a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~ 264 (311)
..-+. | .+.++..+..... +++.+ +||..++.+.+. +.++++|+. .++|+++|+|++ ++|
T Consensus 143 ~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavi-------vtG~~TG~~~d~-~~l~~vr~~~~~~PvllggGvt-~eN 213 (257)
T TIGR00259 143 LADIVVKHAVHLGNRDLESIALDTVERGLADAVI-------LSGKTTGTEVDL-ELLKLAKETVKDTPVLAGSGVN-LEN 213 (257)
T ss_pred EeceeecccCcCCCCCHHHHHHHHHHhcCCCEEE-------ECcCCCCCCCCH-HHHHHHHhccCCCeEEEECCCC-HHH
Confidence 33221 2 2223333332222 23332 445444444443 568888874 479999999996 899
Q ss_pred HHHHHHcCCcEEEEhhHhhchhhhcCCc--hhHHHHHHHHHHHHHhhCC
Q 021527 265 VQQVAGWGADGVIVGSAMVKLLGEAQSP--EEGLKELEKFAKSLKSALP 311 (311)
Q Consensus 265 v~~v~~~GADGvIVGSaiv~~~~~~~~~--~~~~~~~~~~~~~l~~~~~ 311 (311)
+.++++. +||++|||.|.+ + +.+ ....+++++|++.++..++
T Consensus 214 v~e~l~~-adGviVgS~~K~---~-G~~~n~~D~~rV~~Fm~~v~~~~~ 257 (257)
T TIGR00259 214 VEELLSI-ADGVIVATTIKK---D-GVFNNFVDQARVSQFVEKVAHGLK 257 (257)
T ss_pred HHHHHhh-CCEEEECCCccc---C-CccCCCcCHHHHHHHHHHHHHhcC
Confidence 9999998 999999999984 2 212 2457889999999887653
No 22
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=99.71 E-value=2e-15 Score=137.60 Aligned_cols=205 Identities=16% Similarity=0.245 Sum_probs=153.8
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCc--
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCP-- 141 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iP-- 141 (311)
+.|=+.+.|+ ....+.++.|+++|+|++|++ ++||.++.+-+ .| .+.++.+|+. +++|
T Consensus 6 i~pSil~ad~--~~l~~~i~~l~~~g~d~lHiD------imDG~FVPN~t-----fg------~~~i~~lr~~~~~~~~d 66 (223)
T PRK08745 6 IAPSILSADF--ARLGEEVDNVLKAGADWVHFD------VMDNHYVPNLT-----IG------PMVCQALRKHGITAPID 66 (223)
T ss_pred EEeehhhcCH--HHHHHHHHHHHHcCCCEEEEe------cccCccCCCcc-----cC------HHHHHHHHhhCCCCCEE
Confidence 4444555544 678899999999999999998 99998876532 11 4588888877 5777
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
+.||.. .+++|++.+.++|+|-+.++=-......+..+.++++|++.-+-+.|.|+.+.++.+... -..|.+
T Consensus 67 vHLMv~-------~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~-vD~Vlv 138 (223)
T PRK08745 67 VHLMVE-------PVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPE-LDLVLV 138 (223)
T ss_pred EEeccC-------CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhh-cCEEEE
Confidence 688873 467899999999999998872111235678899999999999999999999988877663 345566
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHH
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL 296 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~ 296 (311)
+|+....|.+ .+.+...+.++++|+.. +..|.|.+||+ .+++.++.++|||.+|+||++.+. .++.+.+
T Consensus 139 MtV~PGf~GQ-~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF~~----~d~~~~~ 212 (223)
T PRK08745 139 MSVNPGFGGQ-AFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIFNA----PDYAQVI 212 (223)
T ss_pred EEECCCCCCc-cccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCC----CCHHHHH
Confidence 7776666655 35555667788877752 35699999997 799999999999999999999862 1244445
Q ss_pred HHHHHH
Q 021527 297 KELEKF 302 (311)
Q Consensus 297 ~~~~~~ 302 (311)
+++++.
T Consensus 213 ~~lr~~ 218 (223)
T PRK08745 213 AQMRAA 218 (223)
T ss_pred HHHHHH
Confidence 555443
No 23
>PLN02334 ribulose-phosphate 3-epimerase
Probab=99.70 E-value=5.2e-15 Score=135.03 Aligned_cols=184 Identities=18% Similarity=0.291 Sum_probs=131.6
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--EEEEecCcchh
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--IALFTYYNPIL 152 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--iilm~Y~n~i~ 152 (311)
|+..+.+.++.+.++|+|+|++. ..||....... .| .+.++.+|+..+.| +.+|.
T Consensus 18 ~~~~l~~~l~~~~~~g~~~ihld------~~d~~f~~~~~-----~g------~~~~~~l~~~~~~~~~vhlmv------ 74 (229)
T PLN02334 18 DFANLAEEAKRVLDAGADWLHVD------VMDGHFVPNLT-----IG------PPVVKALRKHTDAPLDCHLMV------ 74 (229)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe------cccCCcCCccc-----cC------HHHHHHHHhcCCCcEEEEecc------
Confidence 44578889999999999999996 56664332110 00 15777777766666 33433
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCC--ChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhC-CceEEEEecCCccC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDV--PLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEAS-EGFVYLVSSIGVTG 229 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDl--p~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a-~gfiY~vs~~G~TG 229 (311)
...+++++.+.++|+||++++.- ..+...+..+.++++|+..-..+.|.|+.+.++.+.+.. -.++-+++...+++
T Consensus 75 -~~p~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~ 153 (229)
T PLN02334 75 -TNPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFG 153 (229)
T ss_pred -CCHHHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCC
Confidence 24578999999999999966643 233455667778888987777778888888877765541 23333345554333
Q ss_pred CCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 230 ARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. ...++...+.++++|+. .+.|+.+-+||+ ++++.++.++|||+++|||++.+
T Consensus 154 ~-~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~-~e~i~~l~~aGad~vvvgsai~~ 207 (229)
T PLN02334 154 G-QSFIPSMMDKVRALRKKYPELDIEVDGGVG-PSTIDKAAEAGANVIVAGSAVFG 207 (229)
T ss_pred c-cccCHHHHHHHHHHHHhCCCCcEEEeCCCC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 2 23566667888999887 468999999995 89999999999999999999987
No 24
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=2.1e-15 Score=135.95 Aligned_cols=192 Identities=22% Similarity=0.327 Sum_probs=153.6
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--E
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--I 142 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--i 142 (311)
+.|=|.+.|. ..+.+.++.++++|+|+++++ ++||.++.+-+- | ...++.+|+.++.| +
T Consensus 6 iapSILsaD~--~~l~~el~~~~~agad~iH~D------VMDghFVPNiTf-----G------p~~v~~l~~~t~~p~Dv 66 (220)
T COG0036 6 IAPSILSADF--ARLGEELKALEAAGADLIHID------VMDGHFVPNITF-----G------PPVVKALRKITDLPLDV 66 (220)
T ss_pred eeeehhhCCH--hHHHHHHHHHHHcCCCEEEEe------ccCCCcCCCccc-----C------HHHHHHHhhcCCCceEE
Confidence 4444555443 778899999999999999998 999988765331 1 45788888877777 7
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
.+|.. .++++++.+.++|+|-+.+.=-..+...+..+.+|++|++.-..+.|.||.+-++.+.. .-.+|.++
T Consensus 67 HLMV~-------~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~-~vD~VllM 138 (220)
T COG0036 67 HLMVE-------NPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLD-DVDLVLLM 138 (220)
T ss_pred EEecC-------CHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh-hCCEEEEE
Confidence 88874 56899999999999999886222235678899999999999999999999998877755 34667788
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCC----CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESST----KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~----~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
|++...|.+ .+-+++.+.|+++|+..+ .-+.|.+||+ .+++.++.++|||-+|.||++.+.
T Consensus 139 sVnPGfgGQ-~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGSalF~~ 203 (220)
T COG0036 139 SVNPGFGGQ-KFIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGSALFGA 203 (220)
T ss_pred eECCCCccc-ccCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEEEEeCC
Confidence 888877776 455567788999998754 3589999997 699999999999999999999873
No 25
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.69 E-value=3.5e-15 Score=135.59 Aligned_cols=156 Identities=14% Similarity=0.222 Sum_probs=116.5
Q ss_pred CCHHHHHHHHHHhhccCCCcEEEEecCcchhc---cCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE
Q 021527 122 TNFNAILSMLKEVVPQMSCPIALFTYYNPILK---RGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF 198 (311)
Q Consensus 122 ~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~---~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l 198 (311)
++.+++++.++++++..+.|+.+ |.++. ++.+++++.+.++|+|+|+++|.. ..++.+.++++++..+..
T Consensus 36 ~~~~~~~~~~~~i~~~~~~~~~v----~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~~---~~~~~~~~~~~~i~~i~~ 108 (236)
T cd04730 36 LTPEALRAEIRKIRALTDKPFGV----NLLVPSSNPDFEALLEVALEEGVPVVSFSFGP---PAEVVERLKAAGIKVIPT 108 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEE----eEecCCCCcCHHHHHHHHHhCCCCEEEEcCCC---CHHHHHHHHHcCCEEEEe
Confidence 35667778888888766567654 33333 378899999999999999999873 345677778888877665
Q ss_pred eCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 199 TTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 199 isp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
+.+ .++++.+.+...+++++.+. +.+|.....+....++++++++.+++|++++|||++++|+.+++..|||||+|
T Consensus 109 v~~---~~~~~~~~~~gad~i~~~~~-~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~v 184 (236)
T cd04730 109 VTS---VEEARKAEAAGADALVAQGA-EAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQM 184 (236)
T ss_pred CCC---HHHHHHHHHcCCCEEEEeCc-CCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEE
Confidence 532 35566666655566666543 33343322223456789999998899999999999999999999999999999
Q ss_pred hhHhhchhhh
Q 021527 279 GSAMVKLLGE 288 (311)
Q Consensus 279 GSaiv~~~~~ 288 (311)
||++++..+.
T Consensus 185 gS~l~~~~e~ 194 (236)
T cd04730 185 GTRFLATEES 194 (236)
T ss_pred chhhhcCccc
Confidence 9999998864
No 26
>PRK08005 epimerase; Validated
Probab=99.68 E-value=5.3e-15 Score=133.57 Aligned_cols=183 Identities=15% Similarity=0.174 Sum_probs=145.3
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--EEEEecCcchh
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--IALFTYYNPIL 152 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--iilm~Y~n~i~ 152 (311)
|+....+.++.|.++|+|.+|++ ++||..+..-+ .| .+.++.+|+.++.| +.||..
T Consensus 11 d~~~l~~el~~l~~~g~d~lHiD------vMDG~FVPN~t-----fG------~~~i~~l~~~t~~~~DvHLMv~----- 68 (210)
T PRK08005 11 DPLRYAEALTALHDAPLGSLHLD------IEDTSFINNIT-----FG------MKTIQAVAQQTRHPLSFHLMVS----- 68 (210)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEe------ccCCCcCCccc-----cC------HHHHHHHHhcCCCCeEEEeccC-----
Confidence 34678899999999999999998 89997776532 11 46888888877777 688874
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARA 232 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~ 232 (311)
.+++|++.+.++|+|-+.++=-..+...+..+.++++|++.-+-+.|.||.+-++.+... -..|.++|+....|.+
T Consensus 69 --~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~-vD~VlvMsV~PGf~GQ- 144 (210)
T PRK08005 69 --SPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQ-LDALMIMTSEPDGRGQ- 144 (210)
T ss_pred --CHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHh-cCEEEEEEecCCCccc-
Confidence 468899999999999998872111235678899999999999999999999888777553 3556667777666655
Q ss_pred CCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 233 SISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 233 ~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+.+...+.++++|+.. ...+.|.+||+ .+++.++.++|||.+|+||++.+
T Consensus 145 ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF~ 196 (210)
T PRK08005 145 QFIAAMCEKVSQSREHFPAAECWADGGIT-LRAARLLAAAGAQHLVIGRALFT 196 (210)
T ss_pred eecHHHHHHHHHHHHhcccCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhhC
Confidence 35566677899888864 34799999997 79999999999999999999986
No 27
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=99.67 E-value=4.3e-15 Score=133.67 Aligned_cols=172 Identities=22% Similarity=0.275 Sum_probs=121.9
Q ss_pred eCCCCCh-hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC
Q 021527 70 TAGDPDL-STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 70 ~~G~P~~-~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
+.=||+. +...++++.+.++|+|.|++| |. -|++.+++.+.++.+|+.+++|++++-.
T Consensus 3 ~~iDP~k~e~~~~ia~~v~~~gtDaI~VG---------GS-----------~gvt~~~~~~~v~~ik~~~~lPvilfp~- 61 (205)
T TIGR01769 3 TLIDPEKSDEIEKIAKNAKDAGTDAIMVG---------GS-----------LGIVESNLDQTVKKIKKITNLPVILFPG- 61 (205)
T ss_pred cccCCCcHHHHHHHHHHHHhcCCCEEEEc---------Cc-----------CCCCHHHHHHHHHHHHhhcCCCEEEECC-
Confidence 4447876 455566779999999999998 41 2467778888999999989999999843
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCCh--------hhHHHHHHHHHHcCCCeEEE----e--------------CCC
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPL--------EETESLQKEAMKNKIELVLF----T--------------TPT 202 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~--------ee~~~~~~~~~~~gi~~I~l----i--------------sp~ 202 (311)
| .+ ...-++|++++|-+-. ....+....++++|++.++- + .|.
T Consensus 62 ~------~~-----~i~~~aD~~~~~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~ 130 (205)
T TIGR01769 62 N------VN-----GLSRYADAVFFMSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPY 130 (205)
T ss_pred C------cc-----ccCcCCCEEEEEEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCC
Confidence 1 11 1113699999975443 22334444558889877752 1 133
Q ss_pred ChHHHHHHHHHhC----CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 203 TPTDRMKAIVEAS----EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 203 t~~eri~~i~~~a----~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
.+.+....++..+ -.++|++...|. ....+ .++++++|+.+++|+++||||+++|+++++++.|||+|||
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~~sGa---~~~v~---~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEAGSGA---SYPVN---PETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCCC---CCCCC---HHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 4445554444432 357888765543 21223 4789999999999999999999999999999999999999
Q ss_pred h
Q 021527 279 G 279 (311)
Q Consensus 279 G 279 (311)
|
T Consensus 205 G 205 (205)
T TIGR01769 205 G 205 (205)
T ss_pred C
Confidence 8
No 28
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=99.67 E-value=1.1e-14 Score=133.29 Aligned_cols=181 Identities=23% Similarity=0.370 Sum_probs=124.1
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
+++..+.-| ||+.....+.++.+.+.|.|.|.+| |. -|++.+++.+.++.+|+ +++
T Consensus 6 ~~~~h~~li---DP~k~~~~~~~~~~~~~gtdai~vG---------GS-----------~~vt~~~~~~~v~~ik~-~~l 61 (232)
T PRK04169 6 KGWLHVTLL---DPDKPLPDEALEAICESGTDAIIVG---------GS-----------DGVTEENVDELVKAIKE-YDL 61 (232)
T ss_pred cCceEEEEE---CCCCCCCHHHHHHHHhcCCCEEEEc---------CC-----------CccchHHHHHHHHHHhc-CCC
Confidence 344455555 8887777777799999999999998 42 14566677889999998 899
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCCh--------hhHHHHHHHHHHcCCCeEEE----eC--------
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--------EETESLQKEAMKNKIELVLF----TT-------- 200 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--------ee~~~~~~~~~~~gi~~I~l----is-------- 200 (311)
|++++-+ | .+. ..-++|++++|-+-. ....+.....++.|++.++- +.
T Consensus 62 Pvilfp~-~------~~~-----i~~~aDa~l~~svlNs~~~~~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~ 129 (232)
T PRK04169 62 PVILFPG-N------IEG-----ISPGADAYLFPSVLNSRNPYWIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVV 129 (232)
T ss_pred CEEEeCC-C------ccc-----cCcCCCEEEEEEEecCCCcchHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeee
Confidence 9999853 1 111 112599999975432 33444555557778876651 11
Q ss_pred ------CCChHHHHHHHHHh-----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCC-cEEEeeCCCCHHHHHHH
Q 021527 201 ------PTTPTDRMKAIVEA-----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTK-PVAVGFGISKPEHVQQV 268 (311)
Q Consensus 201 ------p~t~~eri~~i~~~-----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~-Pv~vGfGIst~e~v~~v 268 (311)
|.+.++-. ..... ...++|+....+ +|. ..+ .++++++|+.++. |+++||||+++|+++++
T Consensus 130 ~~~~~~~~~~~~~~-~~~~lA~~~~g~~~vYle~gs~-~g~--~~~---~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~ 202 (232)
T PRK04169 130 GTAAPIPLDKPDIA-AYAALAAEYLGMPIVYLEYGGG-AGD--PVP---PEMVKAVKKALDITPLIYGGGIRSPEQAREL 202 (232)
T ss_pred eccccCCCChHHHH-HHHHHHHHHcCCCeEEEECCCC-CCC--CCC---HHHHHHHHHhcCCCcEEEECCCCCHHHHHHH
Confidence 22323322 22222 234678874322 222 222 4689999998887 99999999999999999
Q ss_pred HHcCCcEEEEhhHhhc
Q 021527 269 AGWGADGVIVGSAMVK 284 (311)
Q Consensus 269 ~~~GADGvIVGSaiv~ 284 (311)
+..|||+|||||++++
T Consensus 203 l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 203 MAAGADTIVVGNIIEE 218 (232)
T ss_pred HHhCCCEEEEChHHhh
Confidence 9999999999999996
No 29
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.66 E-value=1.1e-14 Score=128.47 Aligned_cols=169 Identities=21% Similarity=0.255 Sum_probs=118.5
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe---cCc-chhccCH
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT---YYN-PILKRGV 156 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~---Y~n-~i~~~g~ 156 (311)
..+++...+|+-.|=.. | .+.|+.+|+.+++||+-.. |-+ ++|.+..
T Consensus 3 ~mA~Aa~~gGA~giR~~---------~--------------------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT 53 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRAN---------G--------------------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPT 53 (192)
T ss_dssp HHHHHHHHCT-SEEEEE---------S--------------------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-S
T ss_pred HHHHHHHHCCceEEEcC---------C--------------------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCC
Confidence 56677778888888775 3 3578889999999998875 443 7899999
Q ss_pred HHHHHHHHHcCCcEEEecCCC----hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCC
Q 021527 157 DNFMSTVRDIGIRGLVVPDVP----LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGAR 231 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp----~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~ 231 (311)
.+-++.+.++|+|-+-+ |.. ++...++.+.+++.+ ..++..-.|- |..... ..-||.++. +..|.|+..
T Consensus 54 ~~ev~~l~~aGadIIAl-DaT~R~Rp~~l~~li~~i~~~~--~l~MADist~-ee~~~A--~~~G~D~I~TTLsGYT~~t 127 (192)
T PF04131_consen 54 LKEVDALAEAGADIIAL-DATDRPRPETLEELIREIKEKY--QLVMADISTL-EEAINA--AELGFDIIGTTLSGYTPYT 127 (192)
T ss_dssp HHHHHHHHHCT-SEEEE-E-SSSS-SS-HHHHHHHHHHCT--SEEEEE-SSH-HHHHHH--HHTT-SEEE-TTTTSSTTS
T ss_pred HHHHHHHHHcCCCEEEE-ecCCCCCCcCHHHHHHHHHHhC--cEEeeecCCH-HHHHHH--HHcCCCEEEcccccCCCCC
Confidence 99999999999998755 221 256788999999988 4444444444 443332 346888885 688999987
Q ss_pred CCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 232 ASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 232 ~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.+ .....++++++++. ++||++.++|+|||+++++++.||+.|||||||.+..
T Consensus 128 ~~-~~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITrP~ 180 (192)
T PF04131_consen 128 KG-DGPDFELVRELVQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITRPQ 180 (192)
T ss_dssp TT-SSHHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH-HH
T ss_pred CC-CCCCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCCHH
Confidence 77 54556899999886 8999999999999999999999999999999999965
No 30
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=99.65 E-value=2.4e-14 Score=130.63 Aligned_cols=194 Identities=15% Similarity=0.126 Sum_probs=148.2
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
+-.+.|=+.+.|+ ....+.++.|.++|+|++|++ ++||.++.+-+ .| .+.++.+|+...+-
T Consensus 12 ~~~I~pSil~ad~--~~l~~el~~l~~~g~d~lHiD------VMDG~FVPNit-----fG------p~~i~~i~~~~~~D 72 (228)
T PRK08091 12 QQPISVGILASNW--LKFNETLTTLSENQLRLLHFD------IADGQFSPFFT-----VG------AIAIKQFPTHCFKD 72 (228)
T ss_pred CCeEEeehhhcCH--HHHHHHHHHHHHCCCCEEEEe------ccCCCcCCccc-----cC------HHHHHHhCCCCCEE
Confidence 3345566666655 788899999999999999998 99998876532 12 45777887533334
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCC--CeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI--ELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi--~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
+.+|.. .+++|++.+.++|+|-+.++==......+..+.++++|+ +.-+-+.|.||.+.++.+... -..|
T Consensus 73 vHLMv~-------~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~-vD~V 144 (228)
T PRK08091 73 VHLMVR-------DQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQ-IDLI 144 (228)
T ss_pred EEeccC-------CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhh-cCEE
Confidence 788874 468899999999999998871111235677889999998 888889999999998877664 3556
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.++|+....|.+. +.+...+.++++|+.. +.-|.|.+||+ .++++++.++|||.+|+||++.+
T Consensus 145 LiMtV~PGfgGQ~-f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSalF~ 212 (228)
T PRK08091 145 QILTLDPRTGTKA-PSDLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQIDWVVSGSALFS 212 (228)
T ss_pred EEEEECCCCCCcc-ccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChhhhC
Confidence 6677777666653 4555667788777642 46699999997 79999999999999999999986
No 31
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=99.65 E-value=1.4e-14 Score=143.53 Aligned_cols=185 Identities=21% Similarity=0.289 Sum_probs=135.0
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe-c
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT-Y 147 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~-Y 147 (311)
+-....++++..+.++.+.++|+|+||+|.|. +. ...++.++++++....+.++.- -
T Consensus 8 ~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~---------~~-------------~~~~~~i~~l~~~~~~~~ii~D~k 65 (430)
T PRK07028 8 VALDLLELDRAVEIAKEAVAGGADWIEAGTPL---------IK-------------SEGMNAIRTLRKNFPDHTIVADMK 65 (430)
T ss_pred EEeccCCHHHHHHHHHHHHhcCCcEEEeCCHH---------HH-------------HhhHHHHHHHHHHCCCCEEEEEee
Confidence 34466778999999999999999999998432 11 1124577777776555555421 1
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCChh-hHHHHHHHHHHcCCCeEE-EeCCCChHHHHHHHHHhCCceEEEEecC
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLE-ETESLQKEAMKNKIELVL-FTTPTTPTDRMKAIVEASEGFVYLVSSI 225 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp~e-e~~~~~~~~~~~gi~~I~-lisp~t~~eri~~i~~~a~gfiY~vs~~ 225 (311)
... .| ..+++.+.++|+|++++++.+.+ ...++.+.++++|++.++ +++|.++.++++.+.+ .|..|+....
T Consensus 66 l~d---~g-~~~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~--~GaD~I~~~p 139 (430)
T PRK07028 66 TMD---TG-AIEVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEE--LGVDYINVHV 139 (430)
T ss_pred ecc---ch-HHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHh--cCCCEEEEEe
Confidence 110 12 35889999999999999876543 345788889999998877 5787777787766544 4566664444
Q ss_pred CccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 226 GVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|.++.. ..+...+.++++++.+++||++.+||+ ++++.++++.||||+++||+|++
T Consensus 140 g~~~~~--~~~~~~~~l~~l~~~~~iPI~a~GGI~-~~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 140 GIDQQM--LGKDPLELLKEVSEEVSIPIAVAGGLD-AETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred ccchhh--cCCChHHHHHHHHhhCCCcEEEECCCC-HHHHHHHHHcCCCEEEEChHHcC
Confidence 554432 223345789999888889999999995 79999999999999999999997
No 32
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=99.64 E-value=4.2e-14 Score=129.34 Aligned_cols=208 Identities=15% Similarity=0.214 Sum_probs=153.0
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--E
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--I 142 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--i 142 (311)
+.|=|.+.|+ ....+.++.+.+ |+|++|++ ++||.++..-+ +. .+.++.+|+.+++| +
T Consensus 5 I~pSil~ad~--~~l~~el~~l~~-g~d~lH~D------iMDG~FVPN~t-------fg----~~~i~~ir~~t~~~~Dv 64 (229)
T PRK09722 5 ISPSLMCMDL--LKFKEQIEFLNS-KADYFHID------IMDGHFVPNLT-------LS----PFFVSQVKKLASKPLDV 64 (229)
T ss_pred EEeehhhcCH--HHHHHHHHHHHh-CCCEEEEe------cccCccCCCcc-------cC----HHHHHHHHhcCCCCeEE
Confidence 4444444444 677788889888 89999998 89998776432 11 45888888777777 6
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
.||.. .+++|++.+.++|+|-+.++ ........+..+.++++|++.-+-+.|.|+.+.++.+... -..|.+
T Consensus 65 HLMv~-------~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~-vD~VLv 136 (229)
T PRK09722 65 HLMVT-------DPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHL-LDKITV 136 (229)
T ss_pred EEEec-------CHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHh-cCEEEE
Confidence 88874 46789999999999999887 2111235568899999999999999999999988877664 355666
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh-HhhchhhhcCCchhH
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGS-AMVKLLGEAQSPEEG 295 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS-aiv~~~~~~~~~~~~ 295 (311)
+|+....|.+ .+.+...+.++++|+.. +.-+.|.+||+ .+++.++.++|||.+|+|| ++.+.- .+..+.
T Consensus 137 MsV~PGf~GQ-~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~~~---~d~~~~ 211 (229)
T PRK09722 137 MTVDPGFAGQ-PFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFNLD---EDIDEA 211 (229)
T ss_pred EEEcCCCcch-hccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcCCC---CCHHHH
Confidence 7776655554 45566677888887642 35699999997 7999999999999999995 477521 123455
Q ss_pred HHHHHHHHHH
Q 021527 296 LKELEKFAKS 305 (311)
Q Consensus 296 ~~~~~~~~~~ 305 (311)
++.+++.+++
T Consensus 212 i~~l~~~~~~ 221 (229)
T PRK09722 212 WDIMTAQIEA 221 (229)
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 33
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=99.63 E-value=2.6e-14 Score=129.90 Aligned_cols=178 Identities=23% Similarity=0.305 Sum_probs=123.7
Q ss_pred EEeCCCCChh---hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEE
Q 021527 68 YITAGDPDLS---TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIAL 144 (311)
Q Consensus 68 yi~~G~P~~~---~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiil 144 (311)
|++.=||+.. ...+.++++.++|.|.|.+| |. -|++.+++.+.++.+|+ ..+|+++
T Consensus 2 h~~liDPdK~~~~~~~~~~~~~~~~gtdai~vG---------GS-----------~~vt~~~~~~~v~~ik~-~~lPvil 60 (223)
T TIGR01768 2 HFTLIDPDKTNPSEADEIAKAAAESGTDAILIG---------GS-----------QGVTYEKTDTLIEALRR-YGLPIIL 60 (223)
T ss_pred ceeeECCCCCCccccHHHHHHHHhcCCCEEEEc---------CC-----------CcccHHHHHHHHHHHhc-cCCCEEE
Confidence 3444588875 78899999999999999998 41 24666777888899986 4499999
Q ss_pred EecCcchhccCHHHHHHHHHHcCCcEEEecCCCh--------hhHHHHHHHHHHcCCCeEEE----eC------------
Q 021527 145 FTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--------EETESLQKEAMKNKIELVLF----TT------------ 200 (311)
Q Consensus 145 m~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--------ee~~~~~~~~~~~gi~~I~l----is------------ 200 (311)
+-. | .+ ...-++|++++|-+-. ....+.....++.+++.++- +.
T Consensus 61 fp~-~------~~-----~i~~~aDa~l~~svlNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~ 128 (223)
T TIGR01768 61 FPS-N------PT-----NVSRDADALFFPSVLNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAK 128 (223)
T ss_pred eCC-C------cc-----ccCcCCCEEEEEEeecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeeccccc
Confidence 852 2 11 1113699999975432 33445556667777776651 11
Q ss_pred --CCChHHHHHHHHHh-----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcC
Q 021527 201 --PTTPTDRMKAIVEA-----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWG 272 (311)
Q Consensus 201 --p~t~~eri~~i~~~-----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~G 272 (311)
|.+.++-. ..... ...++|+....| .| ...+ .+.++++|+.+ ++|+++||||+++|++++++++|
T Consensus 129 ~~p~~~~~~a-a~~~lA~~~~g~~~vYlE~gs~-~g--~~v~---~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG 201 (223)
T TIGR01768 129 PIPYDKEDLA-AYAAMAEEMLGMPIIYLEAGSG-AP--EPVP---PELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAG 201 (223)
T ss_pred ccCCCcHHHH-HHHHHHHHHcCCcEEEEEecCC-CC--CCcC---HHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcC
Confidence 33333332 22222 345789874322 22 2233 36799999988 89999999999999999999999
Q ss_pred CcEEEEhhHhhch
Q 021527 273 ADGVIVGSAMVKL 285 (311)
Q Consensus 273 ADGvIVGSaiv~~ 285 (311)
||+|||||++++-
T Consensus 202 AD~VVVGs~~~~d 214 (223)
T TIGR01768 202 ADTIVTGNVIEED 214 (223)
T ss_pred CCEEEECcHHhhC
Confidence 9999999999973
No 34
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=99.61 E-value=7.1e-14 Score=127.48 Aligned_cols=181 Identities=24% Similarity=0.386 Sum_probs=111.7
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
.|+.++.-| ||+....-+.++.+.+.|.|.|.+| |.. .+.+++++.+.++++ +++
T Consensus 6 ~~~~h~~li---DPdK~~~~~~~~~~~~~gtDai~VG---------GS~----------~~~~~d~vv~~ik~~---~~l 60 (230)
T PF01884_consen 6 WRKLHATLI---DPDKPNPEEALEAACESGTDAIIVG---------GSD----------TGVTLDNVVALIKRV---TDL 60 (230)
T ss_dssp ----EEEEE----TTSS-HHHHHHHHHCTT-SEEEEE----------ST----------HCHHHHHHHHHHHHH---SSS
T ss_pred cccceEEEE---CCCCCCcHHHHHHHHhcCCCEEEEC---------CCC----------CccchHHHHHHHHhc---CCC
Confidence 355455555 8888777788888899999999998 422 134456666666555 899
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecC--------CChhhHHHHHHHHHHcCCCeEEE----eC--------
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPD--------VPLEETESLQKEAMKNKIELVLF----TT-------- 200 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipD--------lp~ee~~~~~~~~~~~gi~~I~l----is-------- 200 (311)
|++++-.-. .... -++|++++|- +-.....+.....++.+++.++. +.
T Consensus 61 PvilfPg~~-------~~vs-----~~aDail~~svlNs~n~~~iig~~~~aa~~~~~~~~e~ip~gYivi~~g~~v~~v 128 (230)
T PF01884_consen 61 PVILFPGSP-------SQVS-----PGADAILFPSVLNSRNPYWIIGAQVEAAPLIKKLGLEVIPTGYIVINPGSKVARV 128 (230)
T ss_dssp -EEEETSTC-------CG-------TTSSEEEEEEETTBSSTTTTTHHHHHHHHHCHHHHCCEEEEEEEEESTTSHHHHH
T ss_pred CEEEeCCCh-------hhcC-----cCCCEEEEEEEecCCCcchHhhHHHHHHHHHHhhcceecceEEEEECCCCceEEe
Confidence 999985321 1111 3699999963 33455566667778888888863 22
Q ss_pred ------CCChHHHHHHHHHh-----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHH
Q 021527 201 ------PTTPTDRMKAIVEA-----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVA 269 (311)
Q Consensus 201 ------p~t~~eri~~i~~~-----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~ 269 (311)
|...++.. ..... ...++|+....|..| ..+ .+.++.+|+..+.|++||+||+|+|+++++.
T Consensus 129 ~~a~pi~~~~~~ia-a~~alA~~~~g~~~iYLEaGSGa~~---~v~---~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~ 201 (230)
T PF01884_consen 129 TGARPIPLDKPEIA-AAAALAAEYLGMPIIYLEAGSGAYG---PVP---EEVIAAVKKLSDIPLIVGGGIRSPEQAREMA 201 (230)
T ss_dssp TTB-----SHHHHH-HHHHHHHHHTT-SEEEEE--TTSSS----HH---HHHHHHHHHSSSSEEEEESS--SHHHHHHHH
T ss_pred ecceecCCCcHHHH-HHHHHHHHHhCCCEEEEEeCCCCCC---Ccc---HHHHHHHHhcCCccEEEeCCcCCHHHHHHHH
Confidence 22222222 22221 346799986444322 222 3445555666799999999999999999999
Q ss_pred HcCCcEEEEhhHhhch
Q 021527 270 GWGADGVIVGSAMVKL 285 (311)
Q Consensus 270 ~~GADGvIVGSaiv~~ 285 (311)
++|||.||||++|.+-
T Consensus 202 ~aGAD~IVvGn~iee~ 217 (230)
T PF01884_consen 202 EAGADTIVVGNAIEED 217 (230)
T ss_dssp CTTSSEEEESCHHHHH
T ss_pred HCCCCEEEECCEEEEc
Confidence 9999999999999973
No 35
>PRK14057 epimerase; Provisional
Probab=99.61 E-value=9.6e-14 Score=128.34 Aligned_cols=193 Identities=15% Similarity=0.128 Sum_probs=145.9
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcE
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPI 142 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPi 142 (311)
-.+.|=+.+.|+ ....+.++.|+++|+|++|++ ++||.++..-+ .| .+.++.+|+....-+
T Consensus 20 ~~IspSil~aD~--~~L~~el~~l~~~g~d~lHiD------VMDG~FVPNit-----fG------p~~i~~i~~~~p~Dv 80 (254)
T PRK14057 20 YPLSVGILAGQW--IALHRYLQQLEALNQPLLHLD------LMDGQFCPQFT-----VG------PWAVGQLPQTFIKDV 80 (254)
T ss_pred CceEeehhhcCH--HHHHHHHHHHHHCCCCEEEEe------ccCCccCCccc-----cC------HHHHHHhccCCCeeE
Confidence 345555555544 788899999999999999998 99997776532 12 357777776332337
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCC---------CeEEEeCCCChHHHHHHHHH
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI---------ELVLFTTPTTPTDRMKAIVE 213 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi---------~~I~lisp~t~~eri~~i~~ 213 (311)
.+|.. .+++|++.+.++|+|-+.++==......+..+.++++|+ ..-+-+.|.||.+.++.+..
T Consensus 81 HLMV~-------~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~ 153 (254)
T PRK14057 81 HLMVA-------DQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILS 153 (254)
T ss_pred EeeeC-------CHHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHH
Confidence 88875 468899999999999998872111235677888999997 36677899999998887766
Q ss_pred hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 214 ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 214 ~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. -..|.++|+....|.+. +.+...+.|+++|+.. ++-|.|.+||+ .+++.++.++|||.+|+||++.+
T Consensus 154 ~-vD~VLvMtV~PGfgGQ~-Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGad~~V~GSalF~ 226 (254)
T PRK14057 154 D-VEVIQLLAVNPGYGSKM-RSSDLHERVAQLLCLLGDKREGKIIVIDGSLT-QDQLPSLIAQGIDRVVSGSALFR 226 (254)
T ss_pred h-CCEEEEEEECCCCCchh-ccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChHhhC
Confidence 4 45566778777666653 5555667788777642 36699999997 79999999999999999999986
No 36
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=99.60 E-value=7.4e-14 Score=127.66 Aligned_cols=199 Identities=15% Similarity=0.259 Sum_probs=142.7
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhccC
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRG 155 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g 155 (311)
....+.++.|++.|+|.+|++ ++||.++.+.+ . ..+.++++|+.. ++|+-+-..-+ .
T Consensus 19 ~~l~~~~~~l~~~~~~~~H~D------imDg~fvpn~~-----~------G~~~v~~lr~~~~~~~lDvHLm~~-----~ 76 (228)
T PTZ00170 19 SKLADEAQDVLSGGADWLHVD------VMDGHFVPNLS-----F------GPPVVKSLRKHLPNTFLDCHLMVS-----N 76 (228)
T ss_pred HHHHHHHHHHHHcCCCEEEEe------cccCccCCCcC-----c------CHHHHHHHHhcCCCCCEEEEECCC-----C
Confidence 678899999999999999998 89997765421 1 256888888765 77754433322 3
Q ss_pred HHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhC-CceEEEEecC-CccCCCC
Q 021527 156 VDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEAS-EGFVYLVSSI-GVTGARA 232 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a-~gfiY~vs~~-G~TG~~~ 232 (311)
.+++++.+.++|+|-+.++=-...+ ..+..+.++++|...-.-+.|.|+.+.++.+.+.. ...|-+++.. |..|.
T Consensus 77 p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~gq-- 154 (228)
T PTZ00170 77 PEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGFGGQ-- 154 (228)
T ss_pred HHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCCCCc--
Confidence 5789999999999999887332233 66788889999988777788999989887775211 1222233433 33333
Q ss_pred CCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHH
Q 021527 233 SISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAK 304 (311)
Q Consensus 233 ~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~ 304 (311)
...+...+.++++|+.. +..+.|.+||+ ++++.++.++|||.+||||++.+. .++.+.++++++.++
T Consensus 155 ~~~~~~~~ki~~~~~~~~~~~I~VdGGI~-~~ti~~~~~aGad~iVvGsaI~~a----~d~~~~~~~i~~~~~ 222 (228)
T PTZ00170 155 SFMHDMMPKVRELRKRYPHLNIQVDGGIN-LETIDIAADAGANVIVAGSSIFKA----KDRKQAIELLRESVQ 222 (228)
T ss_pred EecHHHHHHHHHHHHhcccCeEEECCCCC-HHHHHHHHHcCCCEEEEchHHhCC----CCHHHHHHHHHHHHH
Confidence 23445566788888864 46799999997 799999999999999999999862 235555555554443
No 37
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=6.9e-13 Score=117.91 Aligned_cols=193 Identities=19% Similarity=0.210 Sum_probs=137.9
Q ss_pred eCCCCCh--hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe-
Q 021527 70 TAGDPDL--STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT- 146 (311)
Q Consensus 70 ~~G~P~~--~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~- 146 (311)
++|.|-. +.....+++..++|+-.|-+. | .+-++.+|+.+++||+-..
T Consensus 24 l~~~pl~~~~iv~~mA~Aa~~gGAvgiR~~---------g--------------------v~dIkai~~~v~vPIIGIiK 74 (229)
T COG3010 24 LPGEPLDSPEIVAAMALAAEQGGAVGIRIE---------G--------------------VEDIKAIRAVVDVPIIGIIK 74 (229)
T ss_pred CCCCCCcchhHHHHHHHHHHhCCcceEeec---------c--------------------hhhHHHHHhhCCCCeEEEEe
Confidence 6666654 345556666677777666663 2 4578889999999988775
Q ss_pred --cCc-chhccCHHHHHHHHHHcCCcEEEecCCCh-----hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 147 --YYN-PILKRGVDNFMSTVRDIGIRGLVVPDVPL-----EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 147 --Y~n-~i~~~g~~~fi~~~~~aGadGviipDlp~-----ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
|-| +++.+.+-+-++.+.++|++-+-+ |... +...++....+..| ...+....|.+|- +..+..||
T Consensus 75 rd~~~s~v~ITptlkeVd~L~~~Ga~IIA~-DaT~R~RP~~~~~~~i~~~k~~~--~l~MAD~St~ee~---l~a~~~G~ 148 (229)
T COG3010 75 RDYPDSPVRITPTLKEVDALAEAGADIIAF-DATDRPRPDGDLEELIARIKYPG--QLAMADCSTFEEG---LNAHKLGF 148 (229)
T ss_pred cCCCCCCceecccHHHHHHHHHCCCcEEEe-ecccCCCCcchHHHHHHHhhcCC--cEEEeccCCHHHH---HHHHHcCC
Confidence 544 688888899999999999997544 4332 24555665544443 3444444444444 33557899
Q ss_pred EEEE-ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHH
Q 021527 219 VYLV-SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLK 297 (311)
Q Consensus 219 iY~v-s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~ 297 (311)
.++. +..|.|+...........+++++.+ .+.+|++.+.++||++++++.++||++|+|||||.|.-+
T Consensus 149 D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp~~---------- 217 (229)
T COG3010 149 DIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRPEE---------- 217 (229)
T ss_pred cEEecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCHHH----------
Confidence 9985 5889999544433344578999887 789999999999999999999999999999999999532
Q ss_pred HHHHHHHHHHh
Q 021527 298 ELEKFAKSLKS 308 (311)
Q Consensus 298 ~~~~~~~~l~~ 308 (311)
-...|++.+++
T Consensus 218 It~~F~~~ik~ 228 (229)
T COG3010 218 ITQWFVDAIKS 228 (229)
T ss_pred HHHHHHHHHhc
Confidence 23566666654
No 38
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=99.58 E-value=2.2e-13 Score=123.20 Aligned_cols=177 Identities=22% Similarity=0.299 Sum_probs=124.9
Q ss_pred EEeCCCCCh-hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe
Q 021527 68 YITAGDPDL-STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 68 yi~~G~P~~-~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~ 146 (311)
|++.=||+. +...++++.+.++|.|.|.+| |. -|++.+++.+.+++||+++++|++++.
T Consensus 18 H~tliDP~k~~~~~ei~~~~~~~GTDaImIG---------GS-----------~gvt~~~~~~~v~~ik~~~~lPvilfP 77 (240)
T COG1646 18 HLTLIDPDKTEEADEIAEAAAEAGTDAIMIG---------GS-----------DGVTEENVDNVVEAIKERTDLPVILFP 77 (240)
T ss_pred EEEEeCcccccccHHHHHHHHHcCCCEEEEC---------Cc-----------ccccHHHHHHHHHHHHhhcCCCEEEec
Confidence 677779999 899999999999999999998 41 257778889999999999999999986
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCCh--------hhHHHHHHHHHHcCCCeEEE----eC--------------
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--------EETESLQKEAMKNKIELVLF----TT-------------- 200 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--------ee~~~~~~~~~~~gi~~I~l----is-------------- 200 (311)
+- .+...+ ++|++.+|-+.. ....+-.....+++++.++. +.
T Consensus 78 ~~-------~~~is~-----~aDavff~svLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~i 145 (240)
T COG1646 78 GS-------PSGISP-----YADAVFFPSVLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPI 145 (240)
T ss_pred CC-------hhccCc-----cCCeEEEEEEecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccC
Confidence 42 111111 689998875443 22334455566677776642 22
Q ss_pred CCChHHHHHHHHHh-----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcE
Q 021527 201 PTTPTDRMKAIVEA-----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADG 275 (311)
Q Consensus 201 p~t~~eri~~i~~~-----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADG 275 (311)
|.+.++- ...... ...++|+....| .| .| ...+.++++++.+ |+++|+||+++|+++++.++|||.
T Consensus 146 p~~~~~i-aa~y~la~~~~g~~~~YlEagsg-a~----~P-v~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a~agAD~ 216 (240)
T COG1646 146 PLDKEDI-AAYYALAEKYLGMPVVYLEAGSG-AG----DP-VPVEMVSRVLSDT--PLIVGGGIRSPEQAREMAEAGADT 216 (240)
T ss_pred CCCcHHH-HHHHHHHHHHhCCeEEEEEecCC-CC----CC-cCHHHHHHhhccc--eEEEcCCcCCHHHHHHHHHcCCCE
Confidence 3333332 222232 235688875322 22 12 2236678777655 999999999999999999999999
Q ss_pred EEEhhHhhch
Q 021527 276 VIVGSAMVKL 285 (311)
Q Consensus 276 vIVGSaiv~~ 285 (311)
+|+|+.+.+-
T Consensus 217 IVtG~iiee~ 226 (240)
T COG1646 217 IVTGTIIEED 226 (240)
T ss_pred EEECceeecC
Confidence 9999998873
No 39
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=99.57 E-value=3.6e-15 Score=133.95 Aligned_cols=182 Identities=19% Similarity=0.310 Sum_probs=133.1
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--EEEEecCcchhc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--IALFTYYNPILK 153 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--iilm~Y~n~i~~ 153 (311)
.....+.++.|+++|+|.+|++ ++||..+...+ +. .+.++.+|+.+++| +.+|+.
T Consensus 11 ~~~l~~~i~~l~~~g~d~lHiD------iMDg~fvpn~~-------~g----~~~i~~i~~~~~~~~DvHLMv~------ 67 (201)
T PF00834_consen 11 FLNLEEEIKRLEEAGADWLHID------IMDGHFVPNLT-------FG----PDIIKAIRKITDLPLDVHLMVE------ 67 (201)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEE------EEBSSSSSSB--------B-----HHHHHHHHTTSSSEEEEEEESS------
T ss_pred HHHHHHHHHHHHHcCCCEEEEe------ecccccCCccc-------CC----HHHHHHHhhcCCCcEEEEeeec------
Confidence 3678899999999999999998 88886654321 11 46888888888788 688764
Q ss_pred cCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCC
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARAS 233 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~ 233 (311)
.+++|++.++++|+|-+.++=-..+...++.+.++++|++.-+.+.|.|+.+.++.+.. .-.+|.++|+....|.+ .
T Consensus 68 -~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~-~vD~VlvMsV~PG~~Gq-~ 144 (201)
T PF00834_consen 68 -NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLD-QVDMVLVMSVEPGFGGQ-K 144 (201)
T ss_dssp -SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGC-CSSEEEEESS-TTTSSB--
T ss_pred -cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhh-hcCEEEEEEecCCCCcc-c
Confidence 35679999999999998887112234667889999999999899999999888766644 23455666665544443 4
Q ss_pred CCchHHHHHHHHhhcC-----CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 234 ISGHVQTLLREIKESS-----TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 234 ~~~~~~~~l~~vk~~~-----~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+.+...+.++++|+.. +..+.|.+||+ .+++.++.++|||.+|+||++.+
T Consensus 145 f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~-~~~~~~~~~aGad~~V~Gs~iF~ 199 (201)
T PF00834_consen 145 FIPEVLEKIRELRKLIPENGLDFEIEVDGGIN-EENIKQLVEAGADIFVAGSAIFK 199 (201)
T ss_dssp -HGGHHHHHHHHHHHHHHHTCGSEEEEESSES-TTTHHHHHHHT--EEEESHHHHT
T ss_pred ccHHHHHHHHHHHHHHHhcCCceEEEEECCCC-HHHHHHHHHcCCCEEEECHHHhC
Confidence 5566677888887753 47899999998 59999999999999999999986
No 40
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.57 E-value=6e-13 Score=120.91 Aligned_cols=179 Identities=19% Similarity=0.315 Sum_probs=130.7
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-HcCCCHHHHHHHHHHhhccCCCcEEEEecC
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-ARGTNFNAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
..++| .+.++.+.+.|+|.+.+= ..|+ +. ..+.+ +++++++++..++|+++-+-.
T Consensus 27 ~~~dp-----~~~a~~~~~~g~d~l~v~------dl~~---------~~~~~~~~----~~~i~~i~~~~~~pv~~~GgI 82 (234)
T cd04732 27 YSDDP-----VEVAKKWEEAGAKWLHVV------DLDG---------AKGGEPVN----LELIEEIVKAVGIPVQVGGGI 82 (234)
T ss_pred ECCCH-----HHHHHHHHHcCCCEEEEE------CCCc---------cccCCCCC----HHHHHHHHHhcCCCEEEeCCc
Confidence 44566 899999999999999993 1121 11 13444 358888888889999997643
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe----------------CCCChHHHHHHHH
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT----------------TPTTPTDRMKAIV 212 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li----------------sp~t~~eri~~i~ 212 (311)
+. .+.++.+.+.|+|.+++++.++++...+.+..+++|-+.+.+. ++.++.+.++.+.
T Consensus 83 ~~------~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (234)
T cd04732 83 RS------LEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFE 156 (234)
T ss_pred CC------HHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHH
Confidence 31 2456777889999999999988887778888888876333322 2334556666665
Q ss_pred Hh-CCceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 213 EA-SEGFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 213 ~~-a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+. ++.++|. ++.. |...+.+ .++++++++.+++|+++++||+++++++++.+.|||||+|||++.+
T Consensus 157 ~~ga~~iii~~~~~~---g~~~g~~---~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~ 224 (234)
T cd04732 157 ELGVKAIIYTDISRD---GTLSGPN---FELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIVGKALYE 224 (234)
T ss_pred HcCCCEEEEEeecCC---CccCCCC---HHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence 55 4455554 3333 3333322 4789999998899999999999999999999999999999999987
No 41
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=3.8e-13 Score=118.36 Aligned_cols=197 Identities=15% Similarity=0.285 Sum_probs=151.4
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc----EEEEecCc
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP----IALFTYYN 149 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP----iilm~Y~n 149 (311)
-|+..+.+..+++.++|+|+|+++ ++||.++.+-. +- --+++.+|+.+..| +.+|.
T Consensus 14 ~dfanL~~e~~~~l~~GadwlHlD------VMDg~FVpNiT---------~G--~pvV~slR~~~~~~~ffD~HmMV--- 73 (224)
T KOG3111|consen 14 SDFANLAAECKKMLDAGADWLHLD------VMDGHFVPNIT---------FG--PPVVESLRKHTGADPFFDVHMMV--- 73 (224)
T ss_pred cchHHHHHHHHHHHHcCCCeEEEe------eecccccCCcc---------cc--hHHHHHHHhccCCCcceeEEEee---
Confidence 355667788999999999999998 89997775432 11 23778888876555 55654
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccC
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG 229 (311)
..++++++....+|++.+.++--..++..++.+.+++.|++.-+-+.|.|+-+.+...++ --.++.++|+....|
T Consensus 74 ----~~Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~-~~D~vLvMtVePGFG 148 (224)
T KOG3111|consen 74 ----ENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAE-HVDMVLVMTVEPGFG 148 (224)
T ss_pred ----cCHHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhc-cccEEEEEEecCCCc
Confidence 357899999999999999997444455678999999999999999999999888766544 336778888888788
Q ss_pred CCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHH
Q 021527 230 ARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~ 301 (311)
.+ .+-++....++.+|+.. ++-+-|.+|+. ++++.++.++||+.+|.||++.+.- ++.+.+..+++
T Consensus 149 GQ-kFme~mm~KV~~lR~kyp~l~ievDGGv~-~~ti~~~a~AGAN~iVaGsavf~a~----d~~~vi~~lr~ 215 (224)
T KOG3111|consen 149 GQ-KFMEDMMPKVEWLREKYPNLDIEVDGGVG-PSTIDKAAEAGANMIVAGSAVFGAA----DPSDVISLLRN 215 (224)
T ss_pred hh-hhHHHHHHHHHHHHHhCCCceEEecCCcC-cchHHHHHHcCCCEEEecceeecCC----CHHHHHHHHHH
Confidence 76 45556667899999765 55677999996 8999999999999999999999843 34444444443
No 42
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=99.54 E-value=5.2e-13 Score=119.26 Aligned_cols=181 Identities=22% Similarity=0.182 Sum_probs=126.2
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCc
Q 021527 71 AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYN 149 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n 149 (311)
...++.++..+.++.| ++|+|+||+|.|+..| ..++.++++|+. .+.++++-.-.
T Consensus 6 lD~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~----------------------~g~~~i~~l~~~~~~~~i~~d~k~- 61 (206)
T TIGR03128 6 LDLLDIEEALELAEKV-ADYVDIIEIGTPLIKN----------------------EGIEAVKEMKEAFPDRKVLADLKT- 61 (206)
T ss_pred ecCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHH----------------------hCHHHHHHHHHHCCCCEEEEEEee-
Confidence 4678899999999999 8999999998666332 124577777765 34555532210
Q ss_pred chhccCHHHH-HHHHHHcCCcEEEecCCCh-hhHHHHHHHHHHcCCCeEEE-eCCCChHHHHHHHHHhCCceEEEEecCC
Q 021527 150 PILKRGVDNF-MSTVRDIGIRGLVVPDVPL-EETESLQKEAMKNKIELVLF-TTPTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 150 ~i~~~g~~~f-i~~~~~aGadGviipDlp~-ee~~~~~~~~~~~gi~~I~l-isp~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
.+...+ ++.+.++|+|-++++=... +...++.+.++++|+..+.- .+|.++.+.++...+. |..|+-...|
T Consensus 62 ----~d~~~~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~--g~d~v~~~pg 135 (206)
T TIGR03128 62 ----MDAGEYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKEL--GADYIGVHTG 135 (206)
T ss_pred ----ccchHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHc--CCCEEEEcCC
Confidence 123345 7889999999998874432 34567888999999987765 5888877776655443 5555532233
Q ss_pred ccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 227 VTGARASISGHVQTLLREIKESST-KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..|... .+...+.++++++..+ .++++-+|| +++++.++.+.|||++++||++++
T Consensus 136 ~~~~~~--~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 136 LDEQAK--GQNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred cCcccC--CCCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhcC
Confidence 333322 2222356777777654 567778999 589999999999999999999987
No 43
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.54 E-value=6.8e-13 Score=114.57 Aligned_cols=184 Identities=29% Similarity=0.314 Sum_probs=124.5
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+...++++.+.++|+|.++++.+..+|..+....+ +.++.+++..++|+++..+.|..... .
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 73 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDK-----------------EVLKEVAAETDLPLGVQLAINDAAAA-V 73 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccc-----------------cHHHHHHhhcCCcEEEEEccCCchhh-h
Confidence 58899999999999999999999988876653321 24555566678999998887754321 1
Q ss_pred HHHHHHHHHcCCcEEEecCCCh---hhHHHHHHHHHHc--CCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCC
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPL---EETESLQKEAMKN--KIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGAR 231 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~---ee~~~~~~~~~~~--gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~ 231 (311)
....+.+.++|+|++.++.... +...++.+.+++. ++..+.-+.+....++.. +.+..-.++++....+.++..
T Consensus 74 ~~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~~~ 152 (200)
T cd04722 74 DIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGGGR 152 (200)
T ss_pred hHHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCCCc
Confidence 1123578999999999986542 2345566666665 777777776655433321 223233444444433322222
Q ss_pred CCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 232 ASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 232 ~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
.........+.++++..++||++++||++++++.++++.|||+++|||
T Consensus 153 -~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 153 -DAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred -cCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 222222345666777788999999999999999999999999999997
No 44
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=99.53 E-value=3.3e-13 Score=122.57 Aligned_cols=174 Identities=26% Similarity=0.386 Sum_probs=115.3
Q ss_pred EeCCCCChh-hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCC--CHHHHHHHHHHhhccCCCcEEEE
Q 021527 69 ITAGDPDLS-TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGT--NFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 69 i~~G~P~~~-~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~--~~~~~~~~i~~ir~~~~iPiilm 145 (311)
++.=||+.. ...+..+.+.+.|.|.|.+| |.. |+ +++++++.++++++ .+|++++
T Consensus 3 ~~~iDP~K~~~~~~~~~~~~~~gtdai~vG---------GS~-----------~v~~~~~~~~~~ik~~~~--~~Pvilf 60 (219)
T cd02812 3 VTKLDPDKELVDEEIAKLAEESGTDAIMVG---------GSD-----------GVSSTLDNVVRLIKRIRR--PVPVILF 60 (219)
T ss_pred ceeeCCCCCCCHHHHHHHHHhcCCCEEEEC---------Ccc-----------chhhhHHHHHHHHHHhcC--CCCEEEe
Confidence 344588874 33445555666999999998 422 23 56677777777765 6999998
Q ss_pred ecCcchhccCHHHHHHHHHHcCCcEEEecCCChh--------hHHHHHHHHHH--cCCCeEEE----eC-----------
Q 021527 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLE--------ETESLQKEAMK--NKIELVLF----TT----------- 200 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~e--------e~~~~~~~~~~--~gi~~I~l----is----------- 200 (311)
-.- .+. ..-|+|++++|-+-.. ...+.....++ .+++.++- +.
T Consensus 61 p~~-------~~~-----i~~~aDa~l~~svlns~n~~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a 128 (219)
T cd02812 61 PSN-------PEA-----VSPGADAYLFPSVLNSGDPYWIIGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGA 128 (219)
T ss_pred CCC-------ccc-----cCcCCCEEEEEeeecCCCchHHHHHHHHHHHHhccccccccccceEEEEECCCCceeeeecc
Confidence 531 111 1236999999865432 23334444455 56665541 12
Q ss_pred -CCChHHHHHHHHHhCC----ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCc
Q 021527 201 -PTTPTDRMKAIVEASE----GFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGAD 274 (311)
Q Consensus 201 -p~t~~eri~~i~~~a~----gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GAD 274 (311)
|...++.+..++..++ -++|+- .+|.. .+ .++++++|+.+ +.|+++||||+++|++++++++|||
T Consensus 129 ~~~~~~e~~~ayA~aae~~g~~ivyLe----~SG~~--~~---~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD 199 (219)
T cd02812 129 KTDLKPEDAAAYALAAEYLGMPIVYLE----YSGAY--GP---PEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGAD 199 (219)
T ss_pred CcCCCHHHHHHHHHHHHHcCCeEEEeC----CCCCc--CC---HHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 3333455545544432 346664 34443 22 36899999998 9999999999999999999999999
Q ss_pred EEEEhhHhhch
Q 021527 275 GVIVGSAMVKL 285 (311)
Q Consensus 275 GvIVGSaiv~~ 285 (311)
+|||||++++-
T Consensus 200 ~VVVGsai~~~ 210 (219)
T cd02812 200 TIVVGNIVEED 210 (219)
T ss_pred EEEECchhhCC
Confidence 99999999984
No 45
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.52 E-value=1.5e-12 Score=118.35 Aligned_cols=174 Identities=21% Similarity=0.320 Sum_probs=127.5
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-HcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-ARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.++.+.+.|+|.+.+= + .|+ ++ ..+.+ +++++++++.+++|+.+-+-.. . .+
T Consensus 31 ~~~a~~~~~~g~~~l~v~---d---l~~---------~~~g~~~~----~~~i~~i~~~~~~pi~~ggGI~-----~-~e 85 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVV---D---LDG---------AKEGGPVN----LPVIKKIVRETGVPVQVGGGIR-----S-LE 85 (230)
T ss_pred HHHHHHHHHcCCCEEEEE---e---CCc---------cccCCCCc----HHHHHHHHHhcCCCEEEeCCcC-----C-HH
Confidence 899999999999999992 1 122 11 12223 3588888888889999965321 1 34
Q ss_pred HHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe-C---------------CCChHHHHHHHHHhC-CceEEE
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT-T---------------PTTPTDRMKAIVEAS-EGFVYL 221 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li-s---------------p~t~~eri~~i~~~a-~gfiY~ 221 (311)
-++.+.++|+|.++++..+.++...+.+.++++|.+.+.+. . +..+.+.++.+.+.. ..++|.
T Consensus 86 d~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~ 165 (230)
T TIGR00007 86 DVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYT 165 (230)
T ss_pred HHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEE
Confidence 67788999999999999888887888888999986644321 1 234456666666653 446655
Q ss_pred -EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 -VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 -vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
++..|.+ .+.+ .++++++++.+++|+++++||+++++++++.+.|||||+|||++.+
T Consensus 166 ~~~~~g~~---~g~~---~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~ 223 (230)
T TIGR00007 166 DISRDGTL---SGPN---FELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYE 223 (230)
T ss_pred eecCCCCc---CCCC---HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence 4444432 2222 4678888888899999999999999999999999999999999987
No 46
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=99.51 E-value=3.5e-12 Score=124.82 Aligned_cols=181 Identities=24% Similarity=0.262 Sum_probs=133.8
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecC
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYY 148 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~ 148 (311)
-...|+.++..++++.|.+.+++++|+|.|. + ++.| ++.++++|+. .+.|+.+-.-.
T Consensus 178 ALD~~~~~~A~~i~~~l~~~~~~~iKvG~~L---------~-------~~~G------~~iVk~Lr~~~~~~~I~~DLK~ 235 (391)
T PRK13307 178 ALDLPDLEEVERVLSQLPKSDHIIIEAGTPL---------I-------KKFG------LEVISKIREVRPDAFIVADLKT 235 (391)
T ss_pred ecCCCCHHHHHHHHHhcccccceEEEECHHH---------H-------HHhC------HHHHHHHHHhCCCCeEEEEecc
Confidence 4578999999999999998889999999554 2 2223 4678888876 56776664432
Q ss_pred cchhccCHHHH-HHHHHHcCCcEEEecCCChh-hHHHHHHHHHHcCCCeEE-EeCCCChHHHHHHHHHhCCceEEEEecC
Q 021527 149 NPILKRGVDNF-MSTVRDIGIRGLVVPDVPLE-ETESLQKEAMKNKIELVL-FTTPTTPTDRMKAIVEASEGFVYLVSSI 225 (311)
Q Consensus 149 n~i~~~g~~~f-i~~~~~aGadGviipDlp~e-e~~~~~~~~~~~gi~~I~-lisp~t~~eri~~i~~~a~gfiY~vs~~ 225 (311)
. .+.++ ++.+.++|+|.+.++-.... ...+..+.++++|++.+. ++.|.++.++++.+ .....++-+.+..
T Consensus 236 ~-----Di~~~vv~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l-~~~vD~Vllht~v 309 (391)
T PRK13307 236 L-----DTGNLEARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESL-KVKPDVVELHRGI 309 (391)
T ss_pred c-----ChhhHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHh-hCCCCEEEEcccc
Confidence 2 23455 77899999999999854433 467788999999999888 88999998988776 3333444443322
Q ss_pred CccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 226 GVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. +|.+ .+ ..+.++++|+. .+.++.|.+||+ ++++.++.+.|||++||||+|++
T Consensus 310 d-p~~~---~~-~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf~ 363 (391)
T PRK13307 310 D-EEGT---EH-AWGNIKEIKKAGGKILVAVAGGVR-VENVEEALKAGADILVVGRAITK 363 (391)
T ss_pred C-CCcc---cc-hHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHhC
Confidence 1 1211 22 23568888875 478999999998 89999999999999999999997
No 47
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.47 E-value=6.9e-12 Score=111.92 Aligned_cols=170 Identities=21% Similarity=0.235 Sum_probs=107.0
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+...+.++.+.++|+|++|+..+- .+++.... .+.-++++.+..++|+++
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~~----~~~~~~~~--------------~~~~~~~~~~~~~~~l~~------------ 70 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREKG----LDTRERLE--------------LARALKELCRRYGVPLIV------------ 70 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCC----CCHHHHHH--------------HHHHHHHHHHHhCCeEEE------------
Confidence 457889999999999999997553 22322221 112233343456777766
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCCCC
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARASIS 235 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~~~ 235 (311)
.++++.+.+.|+||++++.-... ...+ ..++..+ ..+.++..|..+-. +.. ..|+.|+. +..-.|+.+.+..
T Consensus 71 ~~~~~~a~~~gad~vh~~~~~~~-~~~~-~~~~~~~--~~~g~~~~t~~e~~-~a~--~~gaD~v~~~~~~~~~~~~~~~ 143 (212)
T PRK00043 71 NDRVDLALAVGADGVHLGQDDLP-VADA-RALLGPD--AIIGLSTHTLEEAA-AAL--AAGADYVGVGPIFPTPTKKDAK 143 (212)
T ss_pred eChHHHHHHcCCCEEecCcccCC-HHHH-HHHcCCC--CEEEEeCCCHHHHH-HHh--HcCCCEEEECCccCCCCCCCCC
Confidence 24678899999999999743211 1111 2222333 33334444544432 222 35666663 2222344333332
Q ss_pred ch-HHHHHHHHhhcCC-CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 236 GH-VQTLLREIKESST-KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 236 ~~-~~~~l~~vk~~~~-~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+. ..+.++++++..+ +||++.+||+ ++++.++.+.||||+++||+|.+
T Consensus 144 ~~~g~~~~~~~~~~~~~~~v~a~GGI~-~~~i~~~~~~Ga~gv~~gs~i~~ 193 (212)
T PRK00043 144 APQGLEGLREIRAAVGDIPIVAIGGIT-PENAPEVLEAGADGVAVVSAITG 193 (212)
T ss_pred CCCCHHHHHHHHHhcCCCCEEEECCcC-HHHHHHHHHcCCCEEEEeHHhhc
Confidence 22 2577888888776 9999999995 89999999999999999999987
No 48
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=99.46 E-value=2e-11 Score=113.84 Aligned_cols=189 Identities=16% Similarity=0.220 Sum_probs=129.0
Q ss_pred cCCccEEEEEeCCCCCh------hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 021527 60 QGKVALIPYITAGDPDL------STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKE 133 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~------~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ 133 (311)
+++..+|+=+=.-.|.. ....++++.++++||++|-+= .||..-| -+ ++.+++
T Consensus 47 ~~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvl---te~~~f~--------------g~----~~~l~~ 105 (260)
T PRK00278 47 AGKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVL---TDERFFQ--------------GS----LEYLRA 105 (260)
T ss_pred cCCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEe---cccccCC--------------CC----HHHHHH
Confidence 45567777663334432 346899999999999999773 4444333 12 467888
Q ss_pred hhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHH
Q 021527 134 VVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAI 211 (311)
Q Consensus 134 ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i 211 (311)
+|+.+++||+..-|.. ... .++.+.++|+|++++. +++.++..++.+.++..|+..+.=+ .+.+| ++..
T Consensus 106 v~~~v~iPvl~kdfi~-----~~~-qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvev--h~~~E-~~~A 176 (260)
T PRK00278 106 ARAAVSLPVLRKDFII-----DPY-QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEV--HDEEE-LERA 176 (260)
T ss_pred HHHhcCCCEEeeeecC-----CHH-HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEe--CCHHH-HHHH
Confidence 8888999998743322 222 5788999999999884 5677788999999999998765444 33333 3333
Q ss_pred HHhCCceEEEEecCCccCCC-CCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 212 VEASEGFVYLVSSIGVTGAR-ASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 212 ~~~a~gfiY~vs~~G~TG~~-~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.+ .|+.|+. +++.. ....++ .+...++.+.. +.|++..+||++++++.++.+.|||||+|||+|++.
T Consensus 177 ~~--~gadiIg----in~rdl~~~~~d-~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~ 246 (260)
T PRK00278 177 LK--LGAPLIG----INNRNLKTFEVD-LETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRA 246 (260)
T ss_pred HH--cCCCEEE----ECCCCcccccCC-HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 22 3555543 22211 112223 34556665544 368999999999999999999999999999999984
No 49
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.45 E-value=5.4e-12 Score=115.46 Aligned_cols=176 Identities=22% Similarity=0.345 Sum_probs=119.0
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHH--
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVD-- 157 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~-- 157 (311)
.+.++.+.+.|+|.+++= |- |+ +. .+. .+-.+.++++.+..++|+++-+ |+.
T Consensus 35 ~e~a~~~~~~G~~~l~i~----dl--~~---------~~-~~~--~~~~~~i~~i~~~~~~~l~v~G--------Gi~~~ 88 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLV----DL--DG---------AF-EGE--RKNAEAIEKIIEAVGVPVQLGG--------GIRSA 88 (241)
T ss_pred HHHHHHHHHcCCCEEEEE----ec--hh---------hh-cCC--cccHHHHHHHHHHcCCcEEEcC--------CcCCH
Confidence 889999999999999983 21 21 11 110 1224578888888899999954 443
Q ss_pred HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE-EeCC---------------CChHHHHHHHHHhCCceEEE
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL-FTTP---------------TTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~-lisp---------------~t~~eri~~i~~~a~gfiY~ 221 (311)
+-++.+.++|+|++++.-...++...+.+..+.+|-+.+. -++. ..+.+.++.+.+..-+.+++
T Consensus 89 ~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~ 168 (241)
T PRK13585 89 EDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILF 168 (241)
T ss_pred HHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 3477888999999999755444444456666666644442 2221 13445555555544455555
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.+.. ..|...+. ..+.++++++.+++||++++||++++++.++.+.|||||+|||++.+-
T Consensus 169 ~~~~-~~g~~~g~---~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~ 228 (241)
T PRK13585 169 TNVD-VEGLLEGV---NTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKG 228 (241)
T ss_pred Eeec-CCCCcCCC---CHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcC
Confidence 4321 12332222 236788998888999999999999999999999999999999999873
No 50
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=99.43 E-value=3.2e-11 Score=109.07 Aligned_cols=182 Identities=23% Similarity=0.255 Sum_probs=128.0
Q ss_pred cEEEEEeCCCCChhhH---HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 64 ALIPYITAGDPDLSTT---AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~---~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
.+-.|+..+.+..... .+.++.+.++|++.+++ ++...+....+ +.-.-++.+.++.++
T Consensus 5 ~~~lylvt~~~~~~~~~~~~~~ve~al~~Gv~~vQl----R~K~~~~~~~~--------------~~a~~~~~lc~~~~v 66 (211)
T COG0352 5 LLRLYLVTDRPLIYDGVDLLEWVEAALKGGVTAVQL----REKDLSDEEYL--------------ALAEKLRALCQKYGV 66 (211)
T ss_pred ccceEEEcCCccccccchhHHHHHHHHhCCCeEEEE----ecCCCChHHHH--------------HHHHHHHHHHHHhCC
Confidence 3456888777766432 79999999999999999 45444432221 112345566677899
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
|+++ ++.++.+.+.|+|||+++ |+|..+..++ .+-..++-+|..+ .+..++..+....|
T Consensus 67 ~liI------------Nd~~dlA~~~~AdGVHlGq~D~~~~~ar~~------~~~~~iIG~S~h~-~eea~~A~~~g~DY 127 (211)
T COG0352 67 PLII------------NDRVDLALAVGADGVHLGQDDMPLAEAREL------LGPGLIIGLSTHD-LEEALEAEELGADY 127 (211)
T ss_pred eEEe------------cCcHHHHHhCCCCEEEcCCcccchHHHHHh------cCCCCEEEeecCC-HHHHHHHHhcCCCE
Confidence 9999 356778889999999997 7887765543 3445566667664 45555544433344
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+-+.+.+ .|-++.+.++...+.++.+++..++|+++=+||+ ++++.++++.|||||.|-|+|..
T Consensus 128 v~~Gpif-pT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi~-~~nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 128 VGLGPIF-PTSTKPDAPPLGLEGLREIRELVNIPVVAIGGIN-LENVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred EEECCcC-CCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHHHhCCCeEEehhHhhc
Confidence 4444444 4555555566566788889888889986666775 89999999999999999999998
No 51
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.42 E-value=8e-11 Score=107.31 Aligned_cols=176 Identities=16% Similarity=0.068 Sum_probs=118.2
Q ss_pred EEeC-CCCChhhHHHHHHHHHHCC-CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE
Q 021527 68 YITA-GDPDLSTTAEALKLLDSCG-SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 68 yi~~-G~P~~~~~~e~~~~L~~~G-aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm 145 (311)
|+.. .+.+.+.+.+.++.+.++| +++|++ +++-.+.....+ ....++++.+..++|+++.
T Consensus 16 y~It~~~~~~~~~~~~l~~al~~G~v~~vQl----R~K~l~~~~~~~--------------~a~~l~~l~~~~gv~liIN 77 (221)
T PRK06512 16 VLVAPPIADGAELAKLLRAALQGGDVASVIL----PQYGLDEATFQK--------------QAEKLVPVIQEAGAAALIA 77 (221)
T ss_pred EEEeCCCcccccHHHHHHHHHcCCCccEEEE----eCCCCCHHHHHH--------------HHHHHHHHHHHhCCEEEEe
Confidence 5533 3333356889999999999 799999 555555422221 1223344445678999983
Q ss_pred ecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-
Q 021527 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV- 222 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v- 222 (311)
+.++.+.+.|+|||+++ |+++.+..+ ..|-+.++-++..++.+...+. ...|..|+.
T Consensus 78 ------------d~~dlA~~~~adGVHLg~~d~~~~~~r~------~~~~~~iiG~s~~~s~~~a~~A--~~~gaDYv~~ 137 (221)
T PRK06512 78 ------------GDSRIAGRVKADGLHIEGNLAALAEAIE------KHAPKMIVGFGNLRDRHGAMEI--GELRPDYLFF 137 (221)
T ss_pred ------------CHHHHHHHhCCCEEEECccccCHHHHHH------hcCCCCEEEecCCCCHHHHHHh--hhcCCCEEEE
Confidence 45778889999999999 777655442 2344556666533334433332 235666763
Q ss_pred -ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 223 -SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 223 -s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+.. |.++...++...+.++.+++.+++||++=+||+ ++++.++.+.|||||.|-|+|.+
T Consensus 138 Gpv~--t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI~-~~n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 138 GKLG--ADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGSD-LASAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred CCCC--CCCCCCCCCCChHHHHHHHHhCCCCEEEEeCCC-HHHHHHHHHhCCCEEEEhHHhhC
Confidence 332 334444444445778888888899998888995 89999999999999999999997
No 52
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=99.41 E-value=2.6e-11 Score=110.87 Aligned_cols=184 Identities=20% Similarity=0.296 Sum_probs=140.9
Q ss_pred eCCCCCh-----hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcC-CCHHHHHHHHHHhhccCCCcEE
Q 021527 70 TAGDPDL-----STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG-TNFNAILSMLKEVVPQMSCPIA 143 (311)
Q Consensus 70 ~~G~P~~-----~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G-~~~~~~~~~i~~ir~~~~iPii 143 (311)
.=|+++. +...+.++.+.+.|+..+|+- ..|| |.+.+ .| ++.++++.+.+++||.
T Consensus 19 ~qGd~~~~~~y~~~P~~~a~~~~~~Ga~~lHlV------DLdg---------A~~g~~~n----~~~i~~i~~~~~~~vQ 79 (241)
T COG0106 19 VQGDYGKETVYSDDPLEVAKKWSDQGAEWLHLV------DLDG---------AKAGGPRN----LEAIKEILEATDVPVQ 79 (241)
T ss_pred ecccCCcceEecCCHHHHHHHHHHcCCcEEEEe------eccc---------cccCCccc----HHHHHHHHHhCCCCEE
Confidence 4455554 245899999999999999996 5677 43222 33 3688999999999999
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE-e---------------CCCChHHH
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF-T---------------TPTTPTDR 207 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l-i---------------sp~t~~er 207 (311)
+-+=.+ ..+.++.+.++|++-||+.-.+.++...+++.++++| +.|.+ + +.-+..+-
T Consensus 80 vGGGIR------s~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g-~rivv~lD~r~g~vav~GW~e~s~~~~~~l 152 (241)
T COG0106 80 VGGGIR------SLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYG-DRIVVALDARDGKVAVSGWQEDSGVELEEL 152 (241)
T ss_pred eeCCcC------CHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcC-CcEEEEEEccCCccccccccccccCCHHHH
Confidence 976322 1356778899999999999999999999999999999 65553 1 22234455
Q ss_pred HHHHHHh-CCceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhc
Q 021527 208 MKAIVEA-SEGFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVK 284 (311)
Q Consensus 208 i~~i~~~-a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~ 284 (311)
++++.+. ...|+|. ++..|+- .+.+ .+.++++.+.+++|+++.+||++-+|++.+.+. |.+|+|||+||+.
T Consensus 153 ~~~~~~~g~~~ii~TdI~~DGtl---~G~n---~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~ 226 (241)
T COG0106 153 AKRLEEVGLAHILYTDISRDGTL---SGPN---VDLVKELAEAVDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYE 226 (241)
T ss_pred HHHHHhcCCCeEEEEeccccccc---CCCC---HHHHHHHHHHhCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhc
Confidence 6666555 4678888 6776632 2333 356788888889999999999999999999999 8999999999997
Q ss_pred h
Q 021527 285 L 285 (311)
Q Consensus 285 ~ 285 (311)
.
T Consensus 227 g 227 (241)
T COG0106 227 G 227 (241)
T ss_pred C
Confidence 3
No 53
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=99.39 E-value=5.5e-11 Score=109.03 Aligned_cols=179 Identities=17% Similarity=0.209 Sum_probs=128.9
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
..++| .+.++.+.+.|+|.+++- ..|+ +...+.+ ++.++++.+.+.+|+.+-+-.+
T Consensus 33 ~~~dp-----~~~a~~~~~~g~~~l~i~------DLd~---------~~~~~~n----~~~i~~i~~~~~~~v~vgGGir 88 (233)
T cd04723 33 STSDP-----LDVARAYKELGFRGLYIA------DLDA---------IMGRGDN----DEAIRELAAAWPLGLWVDGGIR 88 (233)
T ss_pred cCCCH-----HHHHHHHHHCCCCEEEEE------eCcc---------ccCCCcc----HHHHHHHHHhCCCCEEEecCcC
Confidence 35677 899999999999999994 2343 1123334 4588888888889998876332
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCC-CeEEEeC-----------CCChHHHHHHHHHhCCc
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI-ELVLFTT-----------PTTPTDRMKAIVEASEG 217 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi-~~I~lis-----------p~t~~eri~~i~~~a~g 217 (311)
. .+-++.+.++|++-+++.-..+.. ..+.+.++++|= ..++-+. ..++.+.++.+.+....
T Consensus 89 ~------~edv~~~l~~Ga~~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (233)
T cd04723 89 S------LENAQEWLKRGASRVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEE 161 (233)
T ss_pred C------HHHHHHHHHcCCCeEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCe
Confidence 1 245667888999999998877777 667778888875 3343222 22355666777666445
Q ss_pred eEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 218 FVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 218 fiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
++|+ ++..| +..+.+ .++++++.+.+++|+++|+||++.++++++++.|+|+|||||++...
T Consensus 162 li~~di~~~G---~~~g~~---~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 162 LIVLDIDRVG---SGQGPD---LELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred EEEEEcCccc---cCCCcC---HHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcC
Confidence 5555 33333 222322 36788888888999999999999999999999999999999999874
No 54
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.36 E-value=7.9e-11 Score=108.18 Aligned_cols=174 Identities=15% Similarity=0.166 Sum_probs=125.3
Q ss_pred HHHHHHHHH-CCCCEEEEcCCCCCCCCChHHHHHHHHHHH-HcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHH
Q 021527 80 AEALKLLDS-CGSDIIELGVPYSDPLADGPVIQAAATRSL-ARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 80 ~e~~~~L~~-~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~ 157 (311)
.+.++.+.+ .|+|.+++- ..|| +. ....| +++++++.+.+++|+.+-+-.+. .
T Consensus 34 ~~~a~~~~~~~Ga~~l~iv------DLd~---------a~~~~~~n----~~~I~~i~~~~~~pi~vGGGIrs------~ 88 (234)
T PRK13587 34 EESIAYYSQFECVNRIHIV------DLIG---------AKAQHARE----FDYIKSLRRLTTKDIEVGGGIRT------K 88 (234)
T ss_pred HHHHHHHHhccCCCEEEEE------ECcc---------cccCCcch----HHHHHHHHhhcCCeEEEcCCcCC------H
Confidence 779999998 799999994 2344 11 11223 46899998888999988653221 2
Q ss_pred HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC---------------CCChHHHHHHHHHhC-CceEEE
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT---------------PTTPTDRMKAIVEAS-EGFVYL 221 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis---------------p~t~~eri~~i~~~a-~gfiY~ 221 (311)
+-++.+.++|++-+++.-..+++...+.+.++++|=..+.-+. ..++.+.++++.+.. ..++|.
T Consensus 89 e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~t 168 (234)
T PRK13587 89 SQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYT 168 (234)
T ss_pred HHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 4577788899999999988777777788888888733332211 122345566665543 456776
Q ss_pred -EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 -VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 -vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
++..|+ ..+.+ .++++++++.+++|+++++||+++|+++++++.|+|||||||++.+
T Consensus 169 di~~dGt---~~G~~---~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 169 DIAKDGK---MSGPN---FELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred cccCcCC---CCccC---HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 555442 22333 3678888888899999999999999999999999999999999997
No 55
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.36 E-value=9e-11 Score=106.64 Aligned_cols=175 Identities=21% Similarity=0.316 Sum_probs=117.4
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-HcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-ARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.++.+.+.|+|.+++= | .|| ++ ..+.+ ++.++++++.+++|+++-+-.. . .+
T Consensus 33 ~~~a~~~~~~g~~~i~v~----d--ld~---------~~~g~~~~----~~~i~~i~~~~~~pv~~~GGI~-----~-~e 87 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLV----D--LDG---------AKAGKPVN----LELIEAIVKAVDIPVQVGGGIR-----S-LE 87 (233)
T ss_pred HHHHHHHHHcCCCEEEEE----e--CCc---------cccCCccc----HHHHHHHHHHCCCCEEEcCCcC-----C-HH
Confidence 899999999999999993 1 133 11 11233 4688888888899998865322 1 24
Q ss_pred HHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC---------------CCChHHHHHHHHHhCCc-eEEE-
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT---------------PTTPTDRMKAIVEASEG-FVYL- 221 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis---------------p~t~~eri~~i~~~a~g-fiY~- 221 (311)
-++.+.+.|++++++.-..++....+.+.+++++-..++-+. ...+.+..+.+.+..-+ +++.
T Consensus 88 d~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~ 167 (233)
T PRK00748 88 TVEALLDAGVSRVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTD 167 (233)
T ss_pred HHHHHHHcCCCEEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEee
Confidence 567788899999999765555444455555554322222221 22334555555444344 3333
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhch
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVKL 285 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~~ 285 (311)
++..| ...+.+ .+.++++++.+++|+++++||++++|++++.+.| +|||+||+++...
T Consensus 168 ~~~~g---~~~G~d---~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 168 ISRDG---TLSGPN---VEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred ecCcC---CcCCCC---HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 33333 222322 4678999888899999999999999999999998 9999999999873
No 56
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=99.36 E-value=1.3e-10 Score=101.42 Aligned_cols=170 Identities=21% Similarity=0.244 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
....+.++.+.++|++.|++-.+-.++ .+.+ +.++.++++....++++++.
T Consensus 12 ~~~~~~l~~l~~~g~~~i~lr~~~~~~---~~~~---------------~~~~~i~~~~~~~~~~l~~~----------- 62 (196)
T cd00564 12 EDLLEVVEAALKGGVTLVQLREKDLSA---RELL---------------ELARALRELCRKYGVPLIIN----------- 62 (196)
T ss_pred chHHHHHHHHHhcCCCEEEEeCCCCCH---HHHH---------------HHHHHHHHHHHHhCCeEEEe-----------
Confidence 567899999999999999997542211 1111 11223333323356676652
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE--ecCCccCCCCCC
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV--SSIGVTGARASI 234 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v--s~~G~TG~~~~~ 234 (311)
++++.+.+.|+||+++++.... ...+ ..+...+ ..+.++..++ +.+.+..+ .|+.|+. +.. .|+.+.+.
T Consensus 63 -~~~~~a~~~g~~~vh~~~~~~~-~~~~-~~~~~~~--~~~g~~~~t~-~~~~~~~~--~g~d~i~~~~~~-~~~~~~~~ 133 (196)
T cd00564 63 -DRVDLALAVGADGVHLGQDDLP-VAEA-RALLGPD--LIIGVSTHSL-EEALRAEE--LGADYVGFGPVF-PTPTKPGA 133 (196)
T ss_pred -ChHHHHHHcCCCEEecCcccCC-HHHH-HHHcCCC--CEEEeeCCCH-HHHHHHhh--cCCCEEEECCcc-CCCCCCCC
Confidence 3566788999999999853211 1111 2222233 3444454554 44444333 3555552 222 23333332
Q ss_pred -CchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 235 -SGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 235 -~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.+...+.++++++..++||++.+||+ ++++.++.+.|+||+++||++.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~~i~~~ 184 (196)
T cd00564 134 GPPLGLELLREIAELVEIPVVAIGGIT-PENAAEVLAAGADGVAVISAITGA 184 (196)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcCCCEEEEehHhhcC
Confidence 33345778888888889999999996 799999999999999999999863
No 57
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.35 E-value=4.1e-11 Score=111.69 Aligned_cols=178 Identities=22% Similarity=0.301 Sum_probs=123.4
Q ss_pred HHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 79 TAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+.+.++..+++|+=.+.. -+| +|+-..| |+.=-+-.+.|++|++.+++||+-.. +.|.
T Consensus 17 ~~~qa~~ae~aga~~v~~~~~~~-~~~~~~~-------------~v~R~~~~~~I~~Ik~~V~iPVIGi~------K~~~ 76 (283)
T cd04727 17 NAEQARIAEEAGAVAVMALERVP-ADIRAAG-------------GVARMADPKMIKEIMDAVSIPVMAKV------RIGH 76 (283)
T ss_pred CHHHHHHHHHcCceEEeeeccCc-hhhhhcC-------------CeeecCCHHHHHHHHHhCCCCeEEee------ehhH
Confidence 468899999999988776 333 3443333 32111235689999999999998853 3444
Q ss_pred HHHHHHHHHcCCcEEEecCCChh--hHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCC---
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLE--ETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGA--- 230 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~e--e~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~--- 230 (311)
.+-++.+.++|+|-+ |.... -..++...++.. .+..++..-.|-+|-+. +...||.++. +..|.||.
T Consensus 77 ~~Ea~~L~eaGvDiI---DaT~r~rP~~~~~~~iK~~-~~~l~MAD~stleEal~---a~~~Gad~I~TTl~gyT~~~~~ 149 (283)
T cd04727 77 FVEAQILEALGVDMI---DESEVLTPADEEHHIDKHK-FKVPFVCGARNLGEALR---RISEGAAMIRTKGEAGTGNVVE 149 (283)
T ss_pred HHHHHHHHHcCCCEE---eccCCCCcHHHHHHHHHHH-cCCcEEccCCCHHHHHH---HHHCCCCEEEecCCCCCCcHHH
Confidence 566778999999987 43211 145566666664 24444444444444433 3457888885 46678886
Q ss_pred --------------------------CCCCCchHHHHHHHHhhcCCCcEE--EeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 231 --------------------------RASISGHVQTLLREIKESSTKPVA--VGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 231 --------------------------~~~~~~~~~~~l~~vk~~~~~Pv~--vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.....+ ..++|+++++..++||+ +-+||+||+|+.++.+.|||||+|||+|
T Consensus 150 ~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~-d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI 228 (283)
T cd04727 150 AVRHMRAVNGEIRKLQSMSEEELYAVAKEIQA-PYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGI 228 (283)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhhhcccCC-CHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHh
Confidence 112222 24789999998889997 9999999999999999999999999999
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 229 ~~ 230 (283)
T cd04727 229 FK 230 (283)
T ss_pred hc
Confidence 97
No 58
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.35 E-value=1.2e-10 Score=112.51 Aligned_cols=168 Identities=18% Similarity=0.196 Sum_probs=119.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
....+.+..+.++|+++|.+ +++-.|..... +....+.++.+..++++++
T Consensus 157 ~~ll~~l~~al~~Gv~~VQL----R~K~~~~~~~~--------------~~a~~L~~l~~~~~~~lII------------ 206 (347)
T PRK02615 157 ENLLEVVEAALKGGVTLVQY----RDKTADDRQRL--------------EEAKKLKELCHRYGALFIV------------ 206 (347)
T ss_pred hhHHHHHHHHHHcCCCEEEE----CCCCCCHHHHH--------------HHHHHHHHHHHHhCCeEEE------------
Confidence 45788899999999999999 45544432111 1123444555567788888
Q ss_pred HHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE-EecCCccCCCCC
Q 021527 157 DNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL-VSSIGVTGARAS 233 (311)
Q Consensus 157 ~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~-vs~~G~TG~~~~ 233 (311)
.++++.+...|+|||+++ |+|..+...+ .|-+.++.++.++.++-. +. ...|+.|+ ++-...|.++.+
T Consensus 207 ND~vdlAl~~~aDGVHLgq~dl~~~~aR~l------lg~~~iIG~S~Hs~~e~~-~A--~~~GaDYI~lGPvf~T~tKp~ 277 (347)
T PRK02615 207 NDRVDIALAVDADGVHLGQEDLPLAVARQL------LGPEKIIGRSTTNPEEMA-KA--IAEGADYIGVGPVFPTPTKPG 277 (347)
T ss_pred eChHHHHHHcCCCEEEeChhhcCHHHHHHh------cCCCCEEEEecCCHHHHH-HH--HHcCCCEEEECCCcCCCCCCC
Confidence 356788899999999997 7776554322 355567677777655532 22 24577787 343445666655
Q ss_pred CCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 234 ISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 234 ~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.++-..+.++.+++.+++|+++=+||+ ++++.++...|||||.|+|++.+
T Consensus 278 ~~~~Gle~l~~~~~~~~iPv~AiGGI~-~~ni~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 278 KAPAGLEYLKYAAKEAPIPWFAIGGID-KSNIPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcCCcEEEEeHHHhC
Confidence 444445788888888899999999996 89999999999999999999997
No 59
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=99.32 E-value=3e-10 Score=102.16 Aligned_cols=201 Identities=24% Similarity=0.231 Sum_probs=138.3
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecC
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYY 148 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~ 148 (311)
-...++++...++++.+.+. +|+||+|.|. |.+ .| ++.|+++|+. .+.+|+...
T Consensus 9 ALD~~~l~~Ai~~a~~v~~~-~diiEvGTpL---------ik~-------eG------~~aV~~lr~~~pd~~IvAD~-- 63 (217)
T COG0269 9 ALDLLDLEEAIEIAEEVADY-VDIIEVGTPL---------IKA-------EG------MRAVRALRELFPDKIIVADL-- 63 (217)
T ss_pred eecccCHHHHHHHHHHhhhc-ceEEEeCcHH---------HHH-------hh------HHHHHHHHHHCCCCeEEeee--
Confidence 45789999999999999999 9999999544 332 23 4578888876 455566643
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCCh-hhHHHHHHHHHHcCCCe-EEEeCCCChHHHHHHHHHhCCceEEEEecCC
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPL-EETESLQKEAMKNKIEL-VLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~-ee~~~~~~~~~~~gi~~-I~lisp~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
.+.-.. .=+.+.+.++|+|-+.+.-+.. +-.....+.++++|.+. +-++...++++|.+.+.+. |..|+.=..|
T Consensus 64 Kt~D~G--~~e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~--gvd~~~~H~g 139 (217)
T COG0269 64 KTADAG--AIEARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKEL--GVDQVILHRG 139 (217)
T ss_pred eecchh--HHHHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHh--CCCEEEEEec
Confidence 222222 2257889999999988865444 34566888999999864 3467777888998887654 3333332223
Q ss_pred ccCCCCCCCchHHHHHHHHhhcCC--CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHH
Q 021527 227 VTGARASISGHVQTLLREIKESST--KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAK 304 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~~~--~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~ 304 (311)
.=-...+..++ .+.+..+|+..+ ..|.|.+||+ ++++..+...|+|-||||++|.+.- +| .+..++|.+
T Consensus 140 ~D~q~~G~~~~-~~~l~~ik~~~~~g~~vAVaGGI~-~~~i~~~~~~~~~ivIvGraIt~a~----dp---~~~a~~~~~ 210 (217)
T COG0269 140 RDAQAAGKSWG-EDDLEKIKKLSDLGAKVAVAGGIT-PEDIPLFKGIGADIVIVGRAITGAK----DP---AEAARKFKE 210 (217)
T ss_pred ccHhhcCCCcc-HHHHHHHHHhhccCceEEEecCCC-HHHHHHHhcCCCCEEEECchhcCCC----CH---HHHHHHHHH
Confidence 21111222221 245777777664 7999999996 9999999999999999999999832 23 345566666
Q ss_pred HHHh
Q 021527 305 SLKS 308 (311)
Q Consensus 305 ~l~~ 308 (311)
.|+.
T Consensus 211 ~i~~ 214 (217)
T COG0269 211 EIDK 214 (217)
T ss_pred HHhc
Confidence 6643
No 60
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.32 E-value=4.1e-10 Score=103.32 Aligned_cols=179 Identities=19% Similarity=0.201 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~ 157 (311)
...+.++.+++.|+|.|.+= |-..+| ...|.+ ++.++++++.+++|+++-+-.+ . .
T Consensus 28 d~~~~a~~~~~~G~~~i~i~----d~~~~~----------~~~~~~----~~~i~~i~~~~~~pv~~~GGI~-----s-~ 83 (243)
T cd04731 28 DPVELAKRYNEQGADELVFL----DITASS----------EGRETM----LDVVERVAEEVFIPLTVGGGIR-----S-L 83 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEE----cCCccc----------ccCccc----HHHHHHHHHhCCCCEEEeCCCC-----C-H
Confidence 45899999999999977773 111122 012333 3688889888899999876332 1 2
Q ss_pred HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCC-eEEEeC--------------------CCChHHHHHHHHHhCC
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIE-LVLFTT--------------------PTTPTDRMKAIVEASE 216 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~-~I~lis--------------------p~t~~eri~~i~~~a~ 216 (311)
+-++.+.+.|++++++.-..++....+.+.+++++-+ .+.-+. +....+.++.+.+ .
T Consensus 84 ~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~--~ 161 (243)
T cd04731 84 EDARRLLRAGADKVSINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEE--L 161 (243)
T ss_pred HHHHHHHHcCCceEEECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHH--C
Confidence 3456666789999999765555555566666666543 332222 2222344444433 3
Q ss_pred ceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhch
Q 021527 217 GFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVKL 285 (311)
Q Consensus 217 gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~~ 285 (311)
|+.++ ++.....|...+. ..++++++++.+++||++.+||++++++.++++. |+|||+||++|...
T Consensus 162 G~d~i~v~~i~~~g~~~g~---~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~ 229 (243)
T cd04731 162 GAGEILLTSMDRDGTKKGY---DLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFG 229 (243)
T ss_pred CCCEEEEeccCCCCCCCCC---CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcC
Confidence 44333 2222222333333 2477899988889999999999999999999987 99999999999973
No 61
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.29 E-value=1.4e-10 Score=108.26 Aligned_cols=180 Identities=22% Similarity=0.275 Sum_probs=122.2
Q ss_pred HHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 79 TAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+.|.++..+++|+=.+.. -+|. |.-++|-+- ++ +-.+.|++|++.+++||+-.. +.|.
T Consensus 19 ~~eqa~iae~aga~avm~le~~p~-d~r~~ggv~------------R~-~~p~~I~~I~~~V~iPVig~~------kigh 78 (287)
T TIGR00343 19 NPEQAKIAEEAGAVAVMALERVPA-DIRASGGVA------------RM-SDPKMIKEIMDAVSIPVMAKV------RIGH 78 (287)
T ss_pred CHHHHHHHHHcCceEEEeeccCch-hhHhcCCee------------ec-CCHHHHHHHHHhCCCCEEEEe------eccH
Confidence 368899999999988776 3333 333333221 11 225689999999999998853 4455
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCC-----
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGA----- 230 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~----- 230 (311)
..-++.+.++|+|-+=-.+.+ .-..++....+. ..+..+++...+-.|-+.. ...||.++- +..|.||.
T Consensus 79 ~~Ea~~L~~~GvDiIDeTe~l-rPade~~~~~K~-~f~vpfmad~~~l~EAlra---i~~GadmI~Tt~e~gTg~v~~av 153 (287)
T TIGR00343 79 FVEAQILEALGVDYIDESEVL-TPADWTFHIDKK-KFKVPFVCGARDLGEALRR---INEGAAMIRTKGEAGTGNIVEAV 153 (287)
T ss_pred HHHHHHHHHcCCCEEEccCCC-CcHHHHHHHHHH-HcCCCEEccCCCHHHHHHH---HHCCCCEEeccccCCCccHHHHH
Confidence 556678899999987211211 114455555554 3344444454554554443 357887775 45677885
Q ss_pred -------------------------CCCCCchHHHHHHHHhhcCCCcEE--EeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 231 -------------------------RASISGHVQTLLREIKESSTKPVA--VGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 231 -------------------------~~~~~~~~~~~l~~vk~~~~~Pv~--vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
.....+ ..++|+++++..++||+ +-+||.||+|+..+.+.|||||+|||+|.
T Consensus 154 ~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ 232 (287)
T TIGR00343 154 RHMRKINEEIRQIQNMLEEEDLAAVAKELRV-PVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF 232 (287)
T ss_pred HHHHHHHHHHHHHhcccchhHHhhhhcccCC-CHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhh
Confidence 111222 34789999888889998 99999999999999999999999999999
Q ss_pred c
Q 021527 284 K 284 (311)
Q Consensus 284 ~ 284 (311)
+
T Consensus 233 k 233 (287)
T TIGR00343 233 K 233 (287)
T ss_pred c
Confidence 7
No 62
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=99.29 E-value=2.7e-10 Score=100.29 Aligned_cols=175 Identities=22% Similarity=0.274 Sum_probs=111.9
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
||+-....+...+.+..+.++|++.|.+ ++|-.+....++ ..+.+.++.++.++|+++.
T Consensus 4 It~~~~~~~~~~~~l~~~~~~gv~~v~l----R~k~~~~~~~~~--------------~a~~l~~~~~~~~~~liin--- 62 (180)
T PF02581_consen 4 ITDPRLCGDDFLEQLEAALAAGVDLVQL----REKDLSDEELLE--------------LARRLAELCQKYGVPLIIN--- 62 (180)
T ss_dssp EE-STTSTCHHHHHHHHHHHTT-SEEEE----E-SSS-HHHHHH--------------HHHHHHHHHHHTTGCEEEE---
T ss_pred EeCCchhcchHHHHHHHHHHCCCcEEEE----cCCCCCccHHHH--------------HHHHHHHHhhcceEEEEec---
Confidence 4544454578999999999999999999 555444433322 2233344445568899994
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCC
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
++.+.+.+.|+|||+++ |++..+.. +.+ +-+.++.++..+.++ +++..+..-.|+.+...+
T Consensus 63 ---------~~~~la~~~~~dGvHl~~~~~~~~~~r---~~~---~~~~~ig~S~h~~~e-~~~a~~~g~dYv~~gpvf- 125 (180)
T PF02581_consen 63 ---------DRVDLALELGADGVHLGQSDLPPAEAR---KLL---GPDKIIGASCHSLEE-AREAEELGADYVFLGPVF- 125 (180)
T ss_dssp ---------S-HHHHHHCT-SEEEEBTTSSSHHHHH---HHH---TTTSEEEEEESSHHH-HHHHHHCTTSEEEEETSS-
T ss_pred ---------CCHHHHHhcCCCEEEecccccchHHhh---hhc---ccceEEEeecCcHHH-HHHhhhcCCCEEEECCcc-
Confidence 35677888999999997 55544433 222 334566677777666 444433333444444444
Q ss_pred ccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 227 VTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.|-++.+.++--.+.++++++..++||++=+||+ ++++.++.+.|||||.|.|+|
T Consensus 126 ~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~-~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 126 PTSSKPGAPPLGLDGLREIARASPIPVYALGGIT-PENIPELREAGADGVAVISAI 180 (180)
T ss_dssp --SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-SEEEESHHH
T ss_pred CCCCCccccccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHHHcCCCEEEEEeeC
Confidence 3555555555556778888888899999999995 799999999999999999886
No 63
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.29 E-value=5e-10 Score=103.55 Aligned_cols=177 Identities=18% Similarity=0.182 Sum_probs=115.7
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.+.|+|.+.+- |=.+++ -..+.+ ++.++++++.+++|+++-+=.. ..+.
T Consensus 33 ~~~a~~~~~~G~~~i~i~----dl~~~~----------~~~~~~----~~~i~~i~~~~~ipv~~~GGi~------s~~~ 88 (253)
T PRK02083 33 VELAKRYNEEGADELVFL----DITASS----------EGRDTM----LDVVERVAEQVFIPLTVGGGIR------SVED 88 (253)
T ss_pred HHHHHHHHHcCCCEEEEE----eCCccc----------ccCcch----HHHHHHHHHhCCCCEEeeCCCC------CHHH
Confidence 899999999999999993 111111 011223 5689999988999999976322 1345
Q ss_pred HHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCC-eEEEeC---------------------CCChHHHHHHHHHhCCc
Q 021527 160 MSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIE-LVLFTT---------------------PTTPTDRMKAIVEASEG 217 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~-~I~lis---------------------p~t~~eri~~i~~~a~g 217 (311)
++.+.+.|++++++.-..++....+.+..+.+|=+ .+..+. ..+..+.++++.+ .|
T Consensus 89 ~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~g 166 (253)
T PRK02083 89 ARRLLRAGADKVSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEE--LG 166 (253)
T ss_pred HHHHHHcCCCEEEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHH--cC
Confidence 56667799999998754444444455556666522 222221 1123344455444 34
Q ss_pred eEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhch
Q 021527 218 FVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVKL 285 (311)
Q Consensus 218 fiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~~ 285 (311)
+-++ ++.....|..++.+ .++++++++.+++||++++||++++++.++++. |+|||++||+|...
T Consensus 167 ~~~ii~~~i~~~g~~~g~d---~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 167 AGEILLTSMDRDGTKNGYD---LELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred CCEEEEcCCcCCCCCCCcC---HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 4322 22222334444443 467888888889999999999999999999975 99999999999973
No 64
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.28 E-value=5.6e-10 Score=101.76 Aligned_cols=177 Identities=15% Similarity=0.191 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~ 157 (311)
+..+.++.+.+.|+|.+.+= |--.+| -..|.+. ++++++++.+++|+++-+-.+ . .
T Consensus 31 dp~~~a~~~~~~g~~~i~i~----dl~~~~----------~~~~~n~----~~~~~i~~~~~~pv~~~ggi~-----~-~ 86 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVL----DIDASK----------RGREPLF----ELISNLAEECFMPLTVGGGIR-----S-L 86 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEE----eCCCcc----------cCCCCCH----HHHHHHHHhCCCCEEEECCCC-----C-H
Confidence 34899999999999988882 211121 0134454 588888888899998864222 1 2
Q ss_pred HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE-EeC---------------------CCChHHHHHHHHHhC
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL-FTT---------------------PTTPTDRMKAIVEAS 215 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~-lis---------------------p~t~~eri~~i~~~a 215 (311)
+.++.+.+.|++++++....++....+.+..++++-+.+. .+. +..+.+.++.+.+..
T Consensus 87 ~d~~~~~~~G~~~vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G 166 (232)
T TIGR03572 87 EDAKKLLSLGADKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLG 166 (232)
T ss_pred HHHHHHHHcCCCEEEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcC
Confidence 3455577889999999876666666666667777654332 111 122334455554433
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHH-HHHcCCcEEEEhhHh
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQ-VAGWGADGVIVGSAM 282 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~-v~~~GADGvIVGSai 282 (311)
-.++.+.+ ....|...+. ..++++++++.+++||++++||++++++.+ +.+.|||||+|||+|
T Consensus 167 ~d~i~i~~-i~~~g~~~g~---~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 167 AGEILLNS-IDRDGTMKGY---DLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred CCEEEEeC-CCccCCcCCC---CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 23333222 1123333333 257899999989999999999999999999 888999999999997
No 65
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.26 E-value=1.3e-09 Score=100.99 Aligned_cols=175 Identities=17% Similarity=0.197 Sum_probs=117.6
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.+.|+|.+++= | .|+.. -..+.+ +++++++++.+++|+++-+=.. . .+.
T Consensus 33 ~~~a~~~~~~G~~~l~v~----D--l~~~~--------~~~~~n----~~~i~~i~~~~~~pv~~~GGi~-----s-~~d 88 (254)
T TIGR00735 33 VELAQRYDEEGADELVFL----D--ITASS--------EGRTTM----IDVVERTAETVFIPLTVGGGIK-----S-IED 88 (254)
T ss_pred HHHHHHHHHcCCCEEEEE----c--CCccc--------ccChhh----HHHHHHHHHhcCCCEEEECCCC-----C-HHH
Confidence 899999999999999994 1 12200 012222 5688999888999999975321 1 345
Q ss_pred HHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCC-CeEEEeC-----------------------CCChHHHHHHHHHhC
Q 021527 160 MSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI-ELVLFTT-----------------------PTTPTDRMKAIVEAS 215 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi-~~I~lis-----------------------p~t~~eri~~i~~~a 215 (311)
++.+.++|++++++.-..+++...+.+..+.+|= ..++-+. .....+.++.+.+..
T Consensus 89 ~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G 168 (254)
T TIGR00735 89 VDKLLRAGADKVSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLG 168 (254)
T ss_pred HHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcC
Confidence 6667779999999986666666666666777763 3333332 111223344444433
Q ss_pred CceEEE--EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 216 EGFVYL--VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 216 ~gfiY~--vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
-.++.+ ++..| ...+.+ .++++++++.+++||++.+||++++++.++++.| +|||++|+++..
T Consensus 169 ~~~iivt~i~~~g---~~~g~~---~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 169 AGEILLTSMDKDG---TKSGYD---LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY 234 (254)
T ss_pred CCEEEEeCcCccc---CCCCCC---HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence 333333 22222 222222 4678999998999999999999999999999988 999999999986
No 66
>PRK07695 transcriptional regulator TenI; Provisional
Probab=99.26 E-value=2.9e-09 Score=95.09 Aligned_cols=172 Identities=13% Similarity=0.164 Sum_probs=109.3
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEE
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALF 145 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm 145 (311)
+|+......+.+.+.++ +.++|+++|++ ++|-.+. +++.+.++++++. ...++++.
T Consensus 6 ~it~~~~~~~~~~~~~~-~~~~g~~~iql----R~k~~~~-----------------~~~~~~~~~l~~~~~~~~~liin 63 (201)
T PRK07695 6 VISNGHQSFEELVAVAM-QIHSEVDYIHI----REREKSA-----------------KELYEGVESLLKKGVPASKLIIN 63 (201)
T ss_pred EEECCccccchHHHHHH-HHhCCCCEEEE----cCCCCCH-----------------HHHHHHHHHHHHhCCCCCeEEEE
Confidence 34544433455666776 77899999999 5554444 3334455555532 12346662
Q ss_pred ecCcchhccCHHHHHHHHHHcCCcEEEecC--CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVPD--VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~aGadGviipD--lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
++.+.+.+.|+||++++. ++.++ +++. .. +.+..++..+. +...+..+ .|+.|++.
T Consensus 64 ------------~~~~la~~~~~~gvHl~~~~~~~~~---~r~~---~~-~~~ig~s~~s~-e~a~~a~~--~Gadyi~~ 121 (201)
T PRK07695 64 ------------DRVDIALLLNIHRVQLGYRSFSVRS---VREK---FP-YLHVGYSVHSL-EEAIQAEK--NGADYVVY 121 (201)
T ss_pred ------------CHHHHHHHcCCCEEEeCcccCCHHH---HHHh---CC-CCEEEEeCCCH-HHHHHHHH--cCCCEEEE
Confidence 357788899999999973 44332 2222 22 33444555554 44444333 56667642
Q ss_pred -cCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 224 -SIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 224 -~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
....|.++.+.+....+.++++++.+++||++-+|| +++++.++.+.|+|||.|||+|.+
T Consensus 122 g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 122 GHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhc
Confidence 222243333333323467888888889999999999 699999999999999999999997
No 67
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.26 E-value=6.9e-10 Score=102.20 Aligned_cols=180 Identities=22% Similarity=0.278 Sum_probs=121.1
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
..||| .+.++.+.+.|+|.|++- ..|+ +...+.+ +++++++.+.+++|+.+-+=..
T Consensus 30 ~~~dp-----~~~a~~~~~~g~~~l~iv------DLd~---------~~g~~~n----~~~i~~i~~~~~~pv~vgGGir 85 (241)
T PRK14024 30 SYGSP-----LDAALAWQRDGAEWIHLV------DLDA---------AFGRGSN----RELLAEVVGKLDVKVELSGGIR 85 (241)
T ss_pred ECCCH-----HHHHHHHHHCCCCEEEEE------eccc---------cCCCCcc----HHHHHHHHHHcCCCEEEcCCCC
Confidence 35677 889999999999999994 2344 1223333 3689999888899999875322
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE--e------------CCCChHHHHHHHHHhC
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF--T------------TPTTPTDRMKAIVEAS 215 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l--i------------sp~t~~eri~~i~~~a 215 (311)
. .+.++.+.+.|++-+++.-..+++...+.+.+++++=..++- + +...+.+.++.+.+..
T Consensus 86 s------~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G 159 (241)
T PRK14024 86 D------DESLEAALATGCARVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAG 159 (241)
T ss_pred C------HHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcC
Confidence 1 246778888999999998766665555555555554222210 1 1112234455554443
Q ss_pred Cc-eEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH---cCCcEEEEhhHhhch
Q 021527 216 EG-FVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG---WGADGVIVGSAMVKL 285 (311)
Q Consensus 216 ~g-fiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~---~GADGvIVGSaiv~~ 285 (311)
-+ ++|. ++..| ...+.+ .++++++++.+++||++++||+|.+|+.++.+ .|+|||+||+++..-
T Consensus 160 ~~~iiv~~~~~~g---~~~G~d---~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g 228 (241)
T PRK14024 160 CSRYVVTDVTKDG---TLTGPN---LELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAG 228 (241)
T ss_pred CCEEEEEeecCCC---CccCCC---HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcC
Confidence 33 3433 33333 222322 47889999988999999999999999999864 499999999999973
No 68
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=99.25 E-value=1.7e-09 Score=95.73 Aligned_cols=168 Identities=21% Similarity=0.239 Sum_probs=109.1
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+...+.++.+.++|++.|++= ++-.+..... +.+..+..+.+..+.|+++.
T Consensus 13 ~~~~~~~~~~~~~g~~~v~lR----~~~~~~~~~~--------------~~~~~l~~~~~~~~~~l~i~----------- 63 (196)
T TIGR00693 13 ADLLNRVEAALKGGVTLVQLR----DKGSNTRERL--------------ALAEKLQELCRRYGVPFIVN----------- 63 (196)
T ss_pred ccHHHHHHHHHhcCCCEEEEe----cCCCCHHHHH--------------HHHHHHHHHHHHhCCeEEEE-----------
Confidence 457788899999999999994 3333332222 12233444444567888883
Q ss_pred HHHHHHHHHcCCcEEEecC--CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE-EecCCccCCCCC
Q 021527 157 DNFMSTVRDIGIRGLVVPD--VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL-VSSIGVTGARAS 233 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipD--lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~-vs~~G~TG~~~~ 233 (311)
++++.+.+.|+|||++++ ++.++.. .. .+-..+..++-.+..+.. +..+ .|..|+ .+..-.|+++..
T Consensus 64 -~~~~la~~~g~~GvHl~~~~~~~~~~r---~~---~~~~~~ig~s~h~~~e~~-~a~~--~g~dyi~~~~v~~t~~k~~ 133 (196)
T TIGR00693 64 -DRVDLALALGADGVHLGQDDLPASEAR---AL---LGPDKIIGVSTHNLEELA-EAEA--EGADYIGFGPIFPTPTKKD 133 (196)
T ss_pred -CHHHHHHHcCCCEEecCcccCCHHHHH---Hh---cCCCCEEEEeCCCHHHHH-HHhH--cCCCEEEECCccCCCCCCC
Confidence 356788899999999973 4333322 11 223345556666654432 3223 466665 333345665544
Q ss_pred C-CchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 234 I-SGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 234 ~-~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. +....+.++++++.. ++||++.+||+ ++++.++.+.|+|||.+||++.+
T Consensus 134 ~~~~~g~~~l~~~~~~~~~~pv~a~GGI~-~~~~~~~~~~G~~gva~~~~i~~ 185 (196)
T TIGR00693 134 PAPPAGVELLREIAATSIDIPIVAIGGIT-LENAAEVLAAGADGVAVVSAIMQ 185 (196)
T ss_pred CCCCCCHHHHHHHHHhcCCCCEEEECCcC-HHHHHHHHHcCCCEEEEhHHhhC
Confidence 2 222346777777654 59999999996 89999999999999999999997
No 69
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.24 E-value=8.8e-10 Score=101.75 Aligned_cols=175 Identities=23% Similarity=0.269 Sum_probs=121.7
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-HcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 71 AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-ARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
.+|| .+.++.+.+.|+|.+++- ..|| |. ..+.+ ++++++|.+.+ .|+.+-+
T Consensus 29 ~~dP-----~~~A~~~~~~ga~~lhiv------DLd~---------a~~g~~~n----~~~i~~i~~~~-~~v~vGG--- 80 (241)
T PRK14114 29 EKDP-----AELVEKLIEEGFTLIHVV------DLSK---------AIENSVEN----LPVLEKLSEFA-EHIQIGG--- 80 (241)
T ss_pred CCCH-----HHHHHHHHHCCCCEEEEE------ECCC---------cccCCcch----HHHHHHHHhhc-CcEEEec---
Confidence 4677 899999999999999994 2344 22 12223 46888888776 6888764
Q ss_pred chhccCH--HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe---------------CCCChHHHHHHHH
Q 021527 150 PILKRGV--DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT---------------TPTTPTDRMKAIV 212 (311)
Q Consensus 150 ~i~~~g~--~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li---------------sp~t~~eri~~i~ 212 (311)
|+ .+-++.+.++|++-+++.-..++....+.+. .+++-..++-+ +..++.+.++++.
T Consensus 81 -----GIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~-~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~ 154 (241)
T PRK14114 81 -----GIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFL-KEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLK 154 (241)
T ss_pred -----CCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHH-HHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHH
Confidence 33 2456778889999999987766665544444 55663433211 1223445566665
Q ss_pred HhC-CceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-----C-CcEEEEhhHhhc
Q 021527 213 EAS-EGFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-----G-ADGVIVGSAMVK 284 (311)
Q Consensus 213 ~~a-~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-----G-ADGvIVGSaiv~ 284 (311)
+.. ..++|. ++..| +.++.+ .++++++++.+++||++++||++.+|+.++.+. | ++||||||||..
T Consensus 155 ~~g~~~ii~tdI~rdG---t~~G~d---~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~ 228 (241)
T PRK14114 155 EYGLEEIVHTEIEKDG---TLQEHD---FSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLE 228 (241)
T ss_pred hcCCCEEEEEeechhh---cCCCcC---HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHC
Confidence 554 345565 56555 223333 367888888889999999999999999999986 6 999999999987
Q ss_pred h
Q 021527 285 L 285 (311)
Q Consensus 285 ~ 285 (311)
-
T Consensus 229 g 229 (241)
T PRK14114 229 G 229 (241)
T ss_pred C
Confidence 3
No 70
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.23 E-value=1.4e-10 Score=108.54 Aligned_cols=180 Identities=21% Similarity=0.254 Sum_probs=119.8
Q ss_pred HHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHH
Q 021527 80 AEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~ 157 (311)
.+.++..+++|+|.+.+ |.|. |....| |.-.-+-.+.|+++++.+++||+... +.|.-
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~ps-d~~~~g-------------g~~Rm~~p~~I~aIk~~V~iPVigk~------Righ~ 86 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPA-DIRAAG-------------GVARMADPKMIEEIMDAVSIPVMAKA------RIGHF 86 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCc-hHhhcC-------------CeeecCCHHHHHHHHHhCCCCeEEee------hhhHH
Confidence 58889999999998877 7775 555555 22111225688899999999998853 34544
Q ss_pred HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe--------------
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS-------------- 223 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs-------------- 223 (311)
.-++.+.++|+|-+=-.+.+ .-+.++....+. .++..+++.-.+-.|-+.. ...||.++-+
T Consensus 87 ~Ea~~L~~~GvDiID~Te~l-rpad~~~~~~K~-~f~~~fmad~~~l~EAlra---i~~GadmI~Ttge~gtg~v~~av~ 161 (293)
T PRK04180 87 VEAQILEALGVDYIDESEVL-TPADEEYHIDKW-DFTVPFVCGARNLGEALRR---IAEGAAMIRTKGEAGTGNVVEAVR 161 (293)
T ss_pred HHHHHHHHcCCCEEeccCCC-CchHHHHHHHHH-HcCCCEEccCCCHHHHHHH---HHCCCCeeeccCCCCCccHHHHHH
Confidence 55678899999987222211 013345555544 3344444444444454433 3568777643
Q ss_pred -----------cCCccCCCCC----CCchHHHHHHHHhhcCCCcEE--EeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 224 -----------SIGVTGARAS----ISGHVQTLLREIKESSTKPVA--VGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 224 -----------~~G~TG~~~~----~~~~~~~~l~~vk~~~~~Pv~--vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..|.|..... ......++|+++++..++||+ +-+||.||+++.++.+.|||||+|||+|.+
T Consensus 162 h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 162 HMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred HHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 2333332200 111234789999998889997 999999999999999999999999999996
No 71
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.23 E-value=3.3e-09 Score=96.21 Aligned_cols=173 Identities=18% Similarity=0.167 Sum_probs=123.2
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC----C
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM----S 139 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~----~ 139 (311)
.+++-+-.- +.+...+.+++|.++|+..+|+- |+.| +.++.+++++++. +
T Consensus 14 ~vi~vir~~--~~~~a~~~~~al~~~Gi~~iEit--~~~~----------------------~a~~~i~~l~~~~~~~p~ 67 (213)
T PRK06552 14 GVVAVVRGE--SKEEALKISLAVIKGGIKAIEVT--YTNP----------------------FASEVIKELVELYKDDPE 67 (213)
T ss_pred CEEEEEECC--CHHHHHHHHHHHHHCCCCEEEEE--CCCc----------------------cHHHHHHHHHHHcCCCCC
Confidence 366655433 56999999999999999999994 3433 2356777877664 3
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
+-|..-+-.| .+-++.+.++|++=++-|.+.. ++.+.|+++|+..++.+. |+.|-... ...|+.
T Consensus 68 ~~vGaGTV~~-------~~~~~~a~~aGA~FivsP~~~~----~v~~~~~~~~i~~iPG~~--T~~E~~~A---~~~Gad 131 (213)
T PRK06552 68 VLIGAGTVLD-------AVTARLAILAGAQFIVSPSFNR----ETAKICNLYQIPYLPGCM--TVTEIVTA---LEAGSE 131 (213)
T ss_pred eEEeeeeCCC-------HHHHHHHHHcCCCEEECCCCCH----HHHHHHHHcCCCEECCcC--CHHHHHHH---HHcCCC
Confidence 4455544333 4567889999999998887753 366778999998887653 54444332 236666
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESST-KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
|+-- +. .+ .. . .++++.++...+ +|++.-+||+ ++|+.++++.|+|++.+||.+++...
T Consensus 132 ~vkl-FP-a~---~~--G-~~~ik~l~~~~p~ip~~atGGI~-~~N~~~~l~aGa~~vavgs~l~~~~~ 191 (213)
T PRK06552 132 IVKL-FP-GS---TL--G-PSFIKAIKGPLPQVNVMVTGGVN-LDNVKDWFAAGADAVGIGGELNKLAS 191 (213)
T ss_pred EEEE-CC-cc---cC--C-HHHHHHHhhhCCCCEEEEECCCC-HHHHHHHHHCCCcEEEEchHHhCccc
Confidence 6631 21 01 11 1 367888888764 9999999997 89999999999999999999987653
No 72
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.22 E-value=9.7e-10 Score=102.23 Aligned_cols=176 Identities=14% Similarity=0.179 Sum_probs=118.3
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.+.|+|.|.+= |=-.+| -..|.+ +++++++.+..++|+++-+-.+. .+-
T Consensus 33 ~~~a~~~~~~g~~~l~i~----Dl~~~~----------~~~~~n----~~~i~~i~~~~~~pv~~gGGi~s------~~d 88 (258)
T PRK01033 33 INAVRIFNEKEVDELIVL----DIDASK----------RGSEPN----YELIENLASECFMPLCYGGGIKT------LEQ 88 (258)
T ss_pred HHHHHHHHHcCCCEEEEE----ECCCCc----------CCCccc----HHHHHHHHHhCCCCEEECCCCCC------HHH
Confidence 899999999999999993 211221 012334 46888888888999988653221 234
Q ss_pred HHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeE-EEe--------------------CCCChHHHHHHHHHhCCc-
Q 021527 160 MSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV-LFT--------------------TPTTPTDRMKAIVEASEG- 217 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I-~li--------------------sp~t~~eri~~i~~~a~g- 217 (311)
++.+.+.|++++++.-..++....+.+.+++++=..+ .-+ ++..+.+.++.+.+..-+
T Consensus 89 ~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ 168 (258)
T PRK01033 89 AKKIFSLGVEKVSINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGE 168 (258)
T ss_pred HHHHHHCCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCE
Confidence 5566688999999986555655556666666652212 111 233344555555454334
Q ss_pred eEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHH-HcCCcEEEEhhHhhch
Q 021527 218 FVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVA-GWGADGVIVGSAMVKL 285 (311)
Q Consensus 218 fiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~-~~GADGvIVGSaiv~~ 285 (311)
++|. ++..| ...+. ..++++++++.+++||++++||++.+++.+++ +.|+|||++|++|.-.
T Consensus 169 ii~~~i~~~G---~~~G~---d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 169 ILLNSIDRDG---TMKGY---DLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred EEEEccCCCC---CcCCC---CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 3333 33333 22232 24678999998999999999999999999998 7999999999999874
No 73
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.22 E-value=2.4e-09 Score=102.83 Aligned_cols=170 Identities=18% Similarity=0.257 Sum_probs=115.9
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCC--CCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPY--SDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~Pf--sDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
..++.=+. |. +.+.+.+.++.+++.|+|+|||.+.. .+|-..|... .+.+.++++.+++.+++
T Consensus 100 ~pvi~si~-g~-~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~-------------~~~~~eiv~~v~~~~~i 164 (325)
T cd04739 100 IPVIASLN-GV-SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEV-------------EQRYLDILRAVKSAVTI 164 (325)
T ss_pred CeEEEEeC-CC-CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchH-------------HHHHHHHHHHHHhccCC
Confidence 44555553 43 44889999999999999999997743 4553333211 12456788999988899
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
||++-.--| + ..+.++++.+.++|+||+++..--.. ..++ . +..+ +
T Consensus 165 Pv~vKl~p~--~-~~~~~~a~~l~~~Gadgi~~~nt~~~-----------~~id------~----~~~~----------~ 210 (325)
T cd04739 165 PVAVKLSPF--F-SALAHMAKQLDAAGADGLVLFNRFYQ-----------PDID------L----ETLE----------V 210 (325)
T ss_pred CEEEEcCCC--c-cCHHHHHHHHHHcCCCeEEEEcCcCC-----------CCcc------c----cccc----------e
Confidence 999974222 1 24677888899999999988532100 0000 0 0000 0
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
....|.+|.. .-+...+++.++++.+++||+..+||.|++|+.+.+.+|||+|-|||+++.
T Consensus 211 -~~~~glSG~~--~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~ 271 (325)
T cd04739 211 -VPNLLLSSPA--EIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR 271 (325)
T ss_pred -ecCCCcCCcc--chhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhh
Confidence 0012344432 223345789999988899999999999999999999999999999999987
No 74
>PRK00208 thiG thiazole synthase; Reviewed
Probab=99.20 E-value=1.5e-09 Score=99.69 Aligned_cols=178 Identities=23% Similarity=0.295 Sum_probs=111.3
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
|..||+.+...+. +..+|++++=+-+=--|... +.+++++.+.. .+ +.++ -|
T Consensus 17 tgky~s~~~~~~a---i~asg~~ivTvalrR~~~~~-----------------~~~~~~~~i~~----~~--~~~l--pN 68 (250)
T PRK00208 17 TGKYPSPQVMQEA---IEASGAEIVTVALRRVNLGQ-----------------GGDNLLDLLPP----LG--VTLL--PN 68 (250)
T ss_pred cCCCCCHHHHHHH---HHHhCCCeEEEEEEeecCCC-----------------CcchHHhhccc----cC--CEEC--CC
Confidence 6778877766554 45599999988532222110 11344444432 12 2332 25
Q ss_pred chhccCHHHHHH---HHHHcCCcEE----EecC--CChhhHHHHHHHHHHc---CCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 150 PILKRGVDNFMS---TVRDIGIRGL----VVPD--VPLEETESLQKEAMKN---KIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 150 ~i~~~g~~~fi~---~~~~aGadGv----iipD--lp~ee~~~~~~~~~~~---gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
+--.+..++-++ .+.+++-.-+ +++| ....+..+..+.++.. |+..+++++++. ...+++++. |
T Consensus 69 TaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~--~~ak~l~~~--G 144 (250)
T PRK00208 69 TAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDP--VLAKRLEEA--G 144 (250)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHc--C
Confidence 554555555443 3455543222 2343 2233455566666666 999888998763 444455554 4
Q ss_pred eEEEE---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 218 FVYLV---SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..+++ +..| || .++.. .++++.+++..++||+++.||++|+|+.++.+.|||||+|||++.+
T Consensus 145 ~~~vmPlg~pIG-sg--~gi~~--~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 145 CAAVMPLGAPIG-SG--LGLLN--PYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred CCEeCCCCcCCC-CC--CCCCC--HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 44443 3333 44 34422 4678888888889999999999999999999999999999999997
No 75
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.20 E-value=2.3e-09 Score=103.19 Aligned_cols=170 Identities=18% Similarity=0.274 Sum_probs=114.6
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcC--CCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGV--PYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~--PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
..++.=|. -.+.+.+.+.++.++++|+|+|||.+ |-.++-..|... .+.+.++++++++.+++
T Consensus 102 ~pvi~sI~--g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~-------------~~~~~eil~~v~~~~~i 166 (334)
T PRK07565 102 IPVIASLN--GSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEV-------------EQRYLDILRAVKSAVSI 166 (334)
T ss_pred CcEEEEec--cCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccH-------------HHHHHHHHHHHHhccCC
Confidence 44555443 34568889999999999999999964 233443233211 12356889999998999
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
||++....| . ..+.++++.+.++|+|||.+..-.. ......+....
T Consensus 167 PV~vKl~p~--~-~~~~~~a~~l~~~G~dgI~~~n~~~---------------------~~~~d~~~~~~---------- 212 (334)
T PRK07565 167 PVAVKLSPY--F-SNLANMAKRLDAAGADGLVLFNRFY---------------------QPDIDLETLEV---------- 212 (334)
T ss_pred cEEEEeCCC--c-hhHHHHHHHHHHcCCCeEEEECCcC---------------------CCCcChhhccc----------
Confidence 999864222 1 2456788889999999997752100 00000011000
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
....|.+|. ..-+...+++.++++.+++||+..+||.|.+|+.+.+..|||+|-|||+++.
T Consensus 213 -~~~~glsg~--~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~ 273 (334)
T PRK07565 213 -VPGLVLSTP--AELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKMLLAGADVVMIASALLR 273 (334)
T ss_pred -ccCCCCCCc--hhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh
Confidence 001134443 2333445778899888899999999999999999999999999999999997
No 76
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.19 E-value=2e-09 Score=98.77 Aligned_cols=177 Identities=18% Similarity=0.129 Sum_probs=122.9
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcc
Q 021527 71 AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNP 150 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~ 150 (311)
.||| .+.++.+.+.|+|.+++- ..|+ +...+.+ +++++++.+....|+.+-+=..
T Consensus 29 ~~dP-----~~~a~~~~~~ga~~lhiv------DLd~---------a~~~~~n----~~~i~~i~~~~~~~v~vGGGIr- 83 (232)
T PRK13586 29 LGNP-----IEIASKLYNEGYTRIHVV------DLDA---------AEGVGNN----EMYIKEISKIGFDWIQVGGGIR- 83 (232)
T ss_pred cCCH-----HHHHHHHHHCCCCEEEEE------ECCC---------cCCCcch----HHHHHHHHhhCCCCEEEeCCcC-
Confidence 3688 899999999999999994 2343 1112233 3688888774334988865221
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE-eC---------------CCChHHHHHHHHHh
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF-TT---------------PTTPTDRMKAIVEA 214 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l-is---------------p~t~~eri~~i~~~ 214 (311)
..+-++.+.+.|++-+++.-..+++.+.+.+.++++|-+.|.+ +. .-++.+-++++.+.
T Consensus 84 -----s~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~ 158 (232)
T PRK13586 84 -----DIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNEL 158 (232)
T ss_pred -----CHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhc
Confidence 1245677888999999999888777777788888886433321 11 11334555555554
Q ss_pred C-CceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 215 S-EGFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 215 a-~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. ..++|. ++..| +..+.+. ++++++++. ..|+++++||++.+|++++.+.|+|||+||+|+..
T Consensus 159 g~~~ii~tdI~~dG---t~~G~d~---el~~~~~~~-~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~ 223 (232)
T PRK13586 159 ELLGIIFTYISNEG---TTKGIDY---NVKDYARLI-RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL 223 (232)
T ss_pred CCCEEEEecccccc---cCcCcCH---HHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence 3 467777 66665 2234443 567777766 45699999999999999999999999999999985
No 77
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.17 E-value=5.5e-09 Score=94.90 Aligned_cols=188 Identities=16% Similarity=0.117 Sum_probs=124.0
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCc
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCP 141 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iP 141 (311)
+.++.=+ ..|+.++..++++.|.+ .+|++++|.|+ + +..| ++.++++|+. .+.|
T Consensus 4 ~~l~vAL--D~~~~~~a~~l~~~l~~-~v~~~kvG~~l---------~-------~~~G------~~~i~~lk~~~~~~~ 58 (216)
T PRK13306 4 PLLQIAL--DNQDLESAIEDAKKVAE-EVDIIEVGTIL---------L-------LAEG------MKAVRVLRALYPDKI 58 (216)
T ss_pred CcEEEEe--cCCCHHHHHHHHHHccc-cCCEEEEChHH---------H-------HHhC------HHHHHHHHHHCCCCE
Confidence 3344433 77899999999999876 58999999776 1 1122 4577788876 5677
Q ss_pred EEEEecCcchhccCHHHHHH-HHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 142 IALFTYYNPILKRGVDNFMS-TVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~-~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
|.+..-.. .+.+++. .+.++|+|.+.++-....+ ..+..+.++++|.....-+.|.++.++++..... +..
T Consensus 59 v~~DLK~~-----Di~~~v~~~~~~~Gad~vTvH~~a~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~~~~~~--~~~ 131 (216)
T PRK13306 59 IVADTKIA-----DAGKILAKMAFEAGADWVTVICAAHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQWRDA--GIS 131 (216)
T ss_pred EEEEEeec-----CCcHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHcC--Chh
Confidence 76643222 2234554 5889999999998655444 6667777788887655556677788888754332 332
Q ss_pred EE---EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 220 YL---VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 220 Y~---vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
++ .+.....+.. ...+...+.++++++. +.-+.|.+||+ ++++..+.+.|||.+|||++|.+.
T Consensus 132 ~~vl~~a~~~~~~G~-v~s~~~~~~ir~~~~~-~~~i~V~gGI~-~~~~~~~~~~~ad~~VvGr~I~~a 197 (216)
T PRK13306 132 QVIYHRSRDAQLAGV-AWGEKDLNKVKKLSDM-GFKVSVTGGLV-VEDLKLFKGIPVKTFIAGRAIRGA 197 (216)
T ss_pred hhhhhhhhhhhhcCC-CCCHHHHHHHHHHhcC-CCeEEEcCCCC-HhhHHHHhcCCCCEEEECCcccCC
Confidence 33 2322111111 2233334456666542 34489999997 788888899999999999998873
No 78
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.16 E-value=4.2e-09 Score=99.33 Aligned_cols=177 Identities=21% Similarity=0.261 Sum_probs=116.2
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
...+++=|... +.+.+.+.++.++++|+|+|||. |+-|...+ +--..|.+.+.+.++++.+|+.+++|
T Consensus 89 ~~p~ivsi~g~--~~~~~~~~a~~~~~~G~d~iElN--~~cP~~~~--------~g~~~~~~~~~~~eiv~~vr~~~~~P 156 (296)
T cd04740 89 GTPVIASIAGS--TVEEFVEVAEKLADAGADAIELN--ISCPNVKG--------GGMAFGTDPEAVAEIVKAVKKATDVP 156 (296)
T ss_pred CCcEEEEEecC--CHHHHHHHHHHHHHcCCCEEEEE--CCCCCCCC--------CcccccCCHHHHHHHHHHHHhccCCC
Confidence 34465555433 35899999999999999999997 45555432 01123456677788999999888999
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
|.+-.-.+ . ....++++.+.++|+|++.+.+-.. |.. +...+.... + ..+
T Consensus 157 v~vKl~~~--~-~~~~~~a~~~~~~G~d~i~~~nt~~-------------g~~----~~~~~~~~~---~---~~~---- 206 (296)
T cd04740 157 VIVKLTPN--V-TDIVEIARAAEEAGADGLTLINTLK-------------GMA----IDIETRKPI---L---GNV---- 206 (296)
T ss_pred EEEEeCCC--c-hhHHHHHHHHHHcCCCEEEEECCCc-------------ccc----cccccCcee---e---cCC----
Confidence 98853222 1 1234667777888888876653211 000 011110000 0 000
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.-|.+|. .+.+...++++++++.+++||+..+||.+++++.+++..|||+|-||++++.
T Consensus 207 --~gg~sg~--~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~ 265 (296)
T cd04740 207 --TGGLSGP--AIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFV 265 (296)
T ss_pred --cceecCc--ccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc
Confidence 0123332 2233345789999998899999999999999999999999999999999987
No 79
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=99.16 E-value=1.4e-08 Score=91.70 Aligned_cols=170 Identities=19% Similarity=0.231 Sum_probs=118.0
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--E
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--I 142 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--i 142 (311)
+++-+- ..+.+...+.++++.++|+..+|+- +++| +.++.+++++++...+ |
T Consensus 12 ~~~v~r--~~~~~~~~~~~~a~~~gGi~~iEvt--~~~~----------------------~~~~~i~~l~~~~~~~~~i 65 (206)
T PRK09140 12 LIAILR--GITPDEALAHVGALIEAGFRAIEIP--LNSP----------------------DPFDSIAALVKALGDRALI 65 (206)
T ss_pred EEEEEe--CCCHHHHHHHHHHHHHCCCCEEEEe--CCCc----------------------cHHHHHHHHHHHcCCCcEE
Confidence 555443 3466999999999999999999995 3443 1234677777665434 4
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
..-+-.+ .+-++.+.++|+++++.|-... ++.+.++..|+..++- ..|+.|-. +. ...|..|+.
T Consensus 66 GaGTV~~-------~~~~~~a~~aGA~fivsp~~~~----~v~~~~~~~~~~~~~G--~~t~~E~~-~A--~~~Gad~vk 129 (206)
T PRK09140 66 GAGTVLS-------PEQVDRLADAGGRLIVTPNTDP----EVIRRAVALGMVVMPG--VATPTEAF-AA--LRAGAQALK 129 (206)
T ss_pred eEEecCC-------HHHHHHHHHcCCCEEECCCCCH----HHHHHHHHCCCcEEcc--cCCHHHHH-HH--HHcCCCEEE
Confidence 4433332 5678899999999999986543 3455567778765554 55665533 22 235666663
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.+. ++ ... .++++.+++.. ++|+++=+||+ ++|+.++++.|+|++.|||++.+.
T Consensus 130 -~Fp-a~---~~G---~~~l~~l~~~~~~~ipvvaiGGI~-~~n~~~~~~aGa~~vav~s~l~~~ 185 (206)
T PRK09140 130 -LFP-AS---QLG---PAGIKALRAVLPPDVPVFAVGGVT-PENLAPYLAAGAAGFGLGSALYRP 185 (206)
T ss_pred -ECC-CC---CCC---HHHHHHHHhhcCCCCeEEEECCCC-HHHHHHHHHCCCeEEEEehHhccc
Confidence 121 11 122 36788888876 49999999995 899999999999999999999984
No 80
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=99.15 E-value=3.2e-09 Score=98.11 Aligned_cols=175 Identities=17% Similarity=0.067 Sum_probs=121.7
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.+.|+..+++- ..|| +...+.| +++++++.+.+.+|+.+-+=.. . .+-
T Consensus 34 ~~~a~~~~~~g~~~lhiv------DLd~---------a~g~~~n----~~~i~~i~~~~~~~v~vgGGIr-----s-~e~ 88 (243)
T TIGR01919 34 ESAAKWWEQGGAEWIHLV------DLDA---------AFGGGNN----EMMLEEVVKLLVVVEELSGGRR-----D-DSS 88 (243)
T ss_pred HHHHHHHHhCCCeEEEEE------ECCC---------CCCCcch----HHHHHHHHHHCCCCEEEcCCCC-----C-HHH
Confidence 577788899999999996 4455 2223334 3588888888889998865221 1 345
Q ss_pred HHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe------------------CCCChHHHHHHHHHhC-CceEE
Q 021527 160 MSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT------------------TPTTPTDRMKAIVEAS-EGFVY 220 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li------------------sp~t~~eri~~i~~~a-~gfiY 220 (311)
++.+.+.|++-+++.-..++....+.+.++.+|=..+.-+ +..++.+-++++.+.. ..++|
T Consensus 89 ~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~ 168 (243)
T TIGR01919 89 LRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVV 168 (243)
T ss_pred HHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEE
Confidence 6678889999999987777666666666666653222211 1222345566665543 45666
Q ss_pred E-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHH---HcCCcEEEEhhHhhch
Q 021527 221 L-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVA---GWGADGVIVGSAMVKL 285 (311)
Q Consensus 221 ~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~---~~GADGvIVGSaiv~~ 285 (311)
. ++..|+ ..+.+ .++++++++.+++||++++||++.||+.++. +.|+||||||+||...
T Consensus 169 tdI~~dGt---~~G~d---~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g 231 (243)
T TIGR01919 169 TDSKKDGL---SGGPN---ELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYAR 231 (243)
T ss_pred EecCCccc---CCCcC---HHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcC
Confidence 6 555553 23433 3678888888899999999999999999986 4599999999999873
No 81
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.15 E-value=1.5e-08 Score=91.76 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=112.9
Q ss_pred EEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe
Q 021527 67 PYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 67 ~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~ 146 (311)
.|+..++ .+.++.+.++|+++|+| +++-++...... ....+.++.++.++|+++.
T Consensus 15 ly~i~~~------~~~l~~~l~~G~~~vqL----R~k~~~~~~~~~--------------la~~l~~~~~~~~~~liIn- 69 (211)
T PRK03512 15 LYPVVDS------VQWIERLLDAGVRTLQL----RIKDRRDEEVEA--------------DVVAAIALGRRYQARLFIN- 69 (211)
T ss_pred EEEEECC------HHHHHHHHhCCCCEEEE----cCCCCCHHHHHH--------------HHHHHHHHHHHhCCeEEEe-
Confidence 4666554 25688999999999999 566565533322 1223334445678999983
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE--
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-- 222 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-- 222 (311)
++.+.+.+.|+|||+++ |+|..+..+. .|-..++-++..+..+ +.+. ...|..|+.
T Consensus 70 -----------d~~~lA~~~~adGVHlg~~d~~~~~~r~~------~~~~~~iG~S~H~~~e-~~~A--~~~gaDYi~lg 129 (211)
T PRK03512 70 -----------DYWRLAIKHQAYGVHLGQEDLETADLNAI------RAAGLRLGVSTHDDME-IDVA--LAARPSYIALG 129 (211)
T ss_pred -----------CHHHHHHHcCCCEEEcChHhCCHHHHHHh------cCCCCEEEEeCCCHHH-HHHH--hhcCCCEEEEC
Confidence 45777888999999997 6765444321 2445566666666544 3332 235667773
Q ss_pred ecCCccCCCCC-CCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 223 SSIGVTGARAS-ISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 223 s~~G~TG~~~~-~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+.. .|-++.+ .++--.+.++++++. .++||++=+||+ ++++.++...|++||.|-|+|.+
T Consensus 130 pvf-~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvisai~~ 191 (211)
T PRK03512 130 HVF-PTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGIS-LERAPAVLATGVGSIAVVSAITQ 191 (211)
T ss_pred Ccc-CCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCC-HHHHHHHHHcCCCEEEEhhHhhC
Confidence 333 3444432 222223456666655 589999999997 89999999999999999999996
No 82
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=99.15 E-value=3.9e-10 Score=103.11 Aligned_cols=182 Identities=23% Similarity=0.301 Sum_probs=122.3
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEec
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTY 147 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y 147 (311)
+...++| .+.++.+.+.|+|.+++- ..|| +. .| -..-++.++++.+++.+|+.+-+=
T Consensus 25 ~~~~~dP-----~~~a~~~~~~g~~~l~iv------DLda---------a~-~g--~~~n~~~i~~i~~~~~~~i~vgGG 81 (229)
T PF00977_consen 25 TVYSGDP-----VEVAKAFNEQGADELHIV------DLDA---------AK-EG--RGSNLELIKEIAKETGIPIQVGGG 81 (229)
T ss_dssp ECECCCH-----HHHHHHHHHTT-SEEEEE------EHHH---------HC-CT--HHHHHHHHHHHHHHSSSEEEEESS
T ss_pred eEECcCH-----HHHHHHHHHcCCCEEEEE------EccC---------cc-cC--chhHHHHHHHHHhcCCccEEEeCc
Confidence 4456777 899999999999999994 1222 11 11 112357889999888899999763
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE-eC----------------CCChHHHHHH
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF-TT----------------PTTPTDRMKA 210 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l-is----------------p~t~~eri~~ 210 (311)
.. ..+-++.+.+.|++-+++.-..++....+.+.++++|-+.|.+ +. ..++.+.+++
T Consensus 82 Ir------s~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~ 155 (229)
T PF00977_consen 82 IR------SIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKR 155 (229)
T ss_dssp E-------SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHH
T ss_pred cC------cHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHH
Confidence 21 1345678899999999998655555555667777777633322 11 1223455666
Q ss_pred HHHhC-CceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 211 IVEAS-EGFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 211 i~~~a-~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+.+.. ..++|. ++..| +.++.+ .++++++++.++.|+++++||++.+|+.++.+.|+|||+|||||..
T Consensus 156 ~~~~g~~~ii~tdi~~dG---t~~G~d---~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~ 225 (229)
T PF00977_consen 156 LEELGAGEIILTDIDRDG---TMQGPD---LELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHE 225 (229)
T ss_dssp HHHTT-SEEEEEETTTTT---TSSS-----HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEESHHHHT
T ss_pred HHhcCCcEEEEeeccccC---CcCCCC---HHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhC
Confidence 65554 345555 44444 333333 3678899888899999999999999999999999999999999965
No 83
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.13 E-value=4e-09 Score=96.57 Aligned_cols=168 Identities=18% Similarity=0.263 Sum_probs=114.8
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-HcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-ARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
.+.++.+.+. +|.+++- -.|| ++ ..+.| ++.++++++..++|+.+-+=.+ ..+
T Consensus 33 ~~~a~~~~~~-~~~l~iv------Dldg---------a~~g~~~n----~~~i~~i~~~~~~pv~~gGGIr------s~e 86 (228)
T PRK04128 33 VEIALRFSEY-VDKIHVV------DLDG---------AFEGKPKN----LDVVKNIIRETGLKVQVGGGLR------TYE 86 (228)
T ss_pred HHHHHHHHHh-CCEEEEE------ECcc---------hhcCCcch----HHHHHHHHhhCCCCEEEcCCCC------CHH
Confidence 7888888888 9988882 2355 22 11234 4688888888899999865322 135
Q ss_pred HHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe---------------CCCChHHHHHHHHHhCCceEEE-E
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT---------------TPTTPTDRMKAIVEASEGFVYL-V 222 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li---------------sp~t~~eri~~i~~~a~gfiY~-v 222 (311)
.++.+.+.|++++++.-..+ +...+.+.++++| +.++-+ +..++.+-++.+.+....++|. +
T Consensus 87 dv~~l~~~G~~~vivGtaa~-~~~~l~~~~~~~g-~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~~~~ii~t~i 164 (228)
T PRK04128 87 SIKDAYEIGVENVIIGTKAF-DLEFLEKVTSEFE-GITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNYVNRFIYTSI 164 (228)
T ss_pred HHHHHHHCCCCEEEECchhc-CHHHHHHHHHHcC-CEEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHHhCEEEEEec
Confidence 67778889999999987666 5555666777776 433311 2333345555555555677777 5
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+..|+ .++.+ ++.+. ..++||++++||++.||+.++.+.|+|||+|||+|...
T Consensus 165 ~~dGt---~~G~d----~l~~~---~~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 165 ERDGT---LTGIE----EIERF---WGDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred cchhc---ccCHH----HHHHh---cCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 65552 22322 22222 24799999999999999999999999999999999873
No 84
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.12 E-value=9.9e-09 Score=97.38 Aligned_cols=184 Identities=17% Similarity=0.159 Sum_probs=118.0
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCC-ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLA-DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~a-DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
..+|+=+. |..+.+.+.+.++.+++.|+|+|||.+-...+.. .|. - ..-+.+.+.+.++++.+++.+++|
T Consensus 100 ~p~i~si~-G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~------G--~~l~~~~~~~~~iv~~v~~~~~~P 170 (299)
T cd02940 100 KILIASIM-CEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGM------G--AAVGQDPELVEEICRWVREAVKIP 170 (299)
T ss_pred CeEEEEec-CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCC------c--hhhccCHHHHHHHHHHHHHhcCCC
Confidence 34554444 4346689999999999999999999654433311 110 0 011235567778899999888999
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
|.+-.-.|. ..+.++++.+.++|+||+++.+-... ..++ .+++. +.........+
T Consensus 171 v~vKl~~~~---~~~~~~a~~~~~~Gadgi~~~Nt~~~----------~~~i------d~~~~--~~~~~~~~~~~---- 225 (299)
T cd02940 171 VIAKLTPNI---TDIREIARAAKEGGADGVSAINTVNS----------LMGV------DLDGT--PPAPGVEGKTT---- 225 (299)
T ss_pred eEEECCCCc---hhHHHHHHHHHHcCCCEEEEeccccc----------cccc------ccccC--CccccccCCCC----
Confidence 998753321 14567888899999999887532100 0011 11110 00000000000
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.-|.+|. .+.+-..+.+.++++.+ ++||+..+||++.+|+.+.+.+|||+|-|||+++.
T Consensus 226 --~gg~sG~--a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 226 --YGGYSGP--AVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred --cCcccCC--CcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecc
Confidence 1134443 23334467899999988 89999999999999999999999999999999887
No 85
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=99.12 E-value=6.6e-09 Score=95.38 Aligned_cols=179 Identities=22% Similarity=0.284 Sum_probs=109.9
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
|..||+.+...+ .+..+|++++=+-+==-|.. ....+++++.+.. .+ +.++ -|
T Consensus 16 tgky~s~~~~~~---ai~aSg~~ivTva~rR~~~~----------------~~~~~~~~~~i~~----~~--~~~l--pN 68 (248)
T cd04728 16 TGKYPSPAIMKE---AIEASGAEIVTVALRRVNIG----------------DPGGESFLDLLDK----SG--YTLL--PN 68 (248)
T ss_pred cCCCCCHHHHHH---HHHHhCCCEEEEEEEecccC----------------CCCcchHHhhccc----cC--CEEC--CC
Confidence 667777666555 45559999998853222210 1122334444422 12 2332 25
Q ss_pred chhccCHHHHHH---HHHHcCCcEE----EecC--CChhhHHHHHHHHHHc---CCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 150 PILKRGVDNFMS---TVRDIGIRGL----VVPD--VPLEETESLQKEAMKN---KIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 150 ~i~~~g~~~fi~---~~~~aGadGv----iipD--lp~ee~~~~~~~~~~~---gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
+--.+..++-++ .+.+++-.-+ +++| ..+.+..+..+.++.. |+..+++++++. ...+.+.+. |
T Consensus 69 TaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~--~~ar~l~~~--G 144 (248)
T cd04728 69 TAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDP--VLAKRLEDA--G 144 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHc--C
Confidence 444455555443 3455543222 2343 1123445556666666 999998998763 444455554 4
Q ss_pred eEEEEe---cCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 218 FVYLVS---SIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs---~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..+++. ..| || .++.. .++|+.+++..++||+++.||++|+|+.++.+.|||||+|||++.+
T Consensus 145 ~~~vmPlg~pIG-sg--~Gi~~--~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 145 CAAVMPLGSPIG-SG--QGLLN--PYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred CCEeCCCCcCCC-CC--CCCCC--HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 444443 333 44 34422 5788899888889999999999999999999999999999999997
No 86
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=99.11 E-value=1.9e-09 Score=98.27 Aligned_cols=179 Identities=21% Similarity=0.253 Sum_probs=111.4
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEec
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTY 147 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y 147 (311)
+...||| .+.++.+.+.|+|.+++- ..|| +...+.+ +++++++.+. +|+.+-+=
T Consensus 32 ~~~~~dP-----~~~a~~~~~~g~~~l~iv------DLd~---------~~~~~~n----~~~i~~i~~~--~~v~vgGG 85 (221)
T TIGR00734 32 SRLSSSP-----DDAAKVIEEIGARFIYIA------DLDR---------IVGLGDN----FSLLSKLSKR--VELIADCG 85 (221)
T ss_pred eecCCCH-----HHHHHHHHHcCCCEEEEE------Eccc---------ccCCcch----HHHHHHHHhh--CcEEEcCc
Confidence 3456888 899999999999999994 2344 1112233 4688888776 48777652
Q ss_pred CcchhccCHHHHHHHHHH--cCCcEEEecCCChhhHHHHHHHHHHcCCCeE--EEeCC---CChHHHHHHHHHhCCceEE
Q 021527 148 YNPILKRGVDNFMSTVRD--IGIRGLVVPDVPLEETESLQKEAMKNKIELV--LFTTP---TTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~--aGadGviipDlp~ee~~~~~~~~~~~gi~~I--~lisp---~t~~eri~~i~~~a~gfiY 220 (311)
.. ..+ -++.+.. .|++-+++.-..+++...+.+.+.-..++.- .+... .+..+..+.+.....+++|
T Consensus 86 ir-----s~e-~~~~~~~~l~~a~rvvigT~a~~~p~~l~~~~~vvslD~~~g~v~~~g~~~~~~~~~~~~~~~g~~ii~ 159 (221)
T TIGR00734 86 VR-----SPE-DLETLPFTLEFASRVVVATETLDITELLRECYTVVSLDFKEKFLDASGLFESLEEVRDFLNSFDYGLIV 159 (221)
T ss_pred cC-----CHH-HHHHHHhhhccceEEeecChhhCCHHHHHHhhhEEEEEeECCccccccccccHHHHHHHHHhcCCEEEE
Confidence 21 122 2444422 3699998887766655544444311111110 00000 1122223333222236777
Q ss_pred E-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 221 L-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 221 ~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. ++.. |+..+.+ .++++++++.+++|+++++||++++|++++.+.|||||+|||+|..
T Consensus 160 tdI~~d---Gt~~G~d---~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 160 LDIHSV---GTMKGPN---LELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred EECCcc---ccCCCCC---HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 5 3443 3333333 4788999888899999999999999999999999999999999975
No 87
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.10 E-value=2.4e-08 Score=88.77 Aligned_cols=172 Identities=20% Similarity=0.224 Sum_probs=116.7
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIA 143 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPii 143 (311)
.+++-+. .++.+...+.++.+.++|++++|+= +++| +..+.++.++++++... +
T Consensus 13 ~~~~v~r--~~~~~~~~~~~~~~~~~Gv~~vqlr--~k~~-------------------~~~e~~~~~~~~~~~~~--~- 66 (187)
T PRK07455 13 RAIAVIR--APDLELGLQMAEAVAAGGMRLIEIT--WNSD-------------------QPAELISQLREKLPECI--I- 66 (187)
T ss_pred CEEEEEE--cCCHHHHHHHHHHHHHCCCCEEEEe--CCCC-------------------CHHHHHHHHHHhCCCcE--E-
Confidence 3555554 3466899999999999999999993 2222 12234445555543221 1
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
+.++++. .+.++.+.++|+||++.|.+..+ ..+.++.+++..++- ..|+.|-.+. ...|+.|+--
T Consensus 67 ---g~gtvl~---~d~~~~A~~~gAdgv~~p~~~~~----~~~~~~~~~~~~i~G--~~t~~e~~~A---~~~Gadyv~~ 131 (187)
T PRK07455 67 ---GTGTILT---LEDLEEAIAAGAQFCFTPHVDPE----LIEAAVAQDIPIIPG--ALTPTEIVTA---WQAGASCVKV 131 (187)
T ss_pred ---eEEEEEc---HHHHHHHHHcCCCEEECCCCCHH----HHHHHHHcCCCEEcC--cCCHHHHHHH---HHCCCCEEEE
Confidence 1223322 47889999999999999987633 445567788876655 3555554322 2367777742
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 224 SIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+. |.. ..-.++++.+++.. ++|+++=+||+ ++|+.++++.|||||.|||++.+
T Consensus 132 -Fp-t~~-----~~G~~~l~~~~~~~~~ipvvaiGGI~-~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 132 -FP-VQA-----VGGADYIKSLQGPLGHIPLIPTGGVT-LENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred -Cc-CCc-----ccCHHHHHHHHhhCCCCcEEEeCCCC-HHHHHHHHHCCCeEEEEehhccc
Confidence 22 211 11246899999887 69999999995 89999999999999999999986
No 88
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=99.10 E-value=1.6e-08 Score=94.17 Aligned_cols=178 Identities=16% Similarity=0.155 Sum_probs=127.4
Q ss_pred EEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE
Q 021527 66 IPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 66 i~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm 145 (311)
..|-..++| .+.++.+.+.|++++|+- ..|| ..+.+ ++.+++|++ +++||-+-
T Consensus 37 ~~y~~~~dP-----~~~A~~~~~~Ga~~lHvV------DLdg-----------g~~~n----~~~i~~i~~-~~~~vqvG 89 (262)
T PLN02446 37 TNFESDKSA-----AEFAEMYKRDGLTGGHVI------MLGA-----------DDASL----AAALEALRA-YPGGLQVG 89 (262)
T ss_pred EEeCCCCCH-----HHHHHHHHHCCCCEEEEE------ECCC-----------CCccc----HHHHHHHHh-CCCCEEEe
Confidence 345556788 899999999999999995 3355 11223 468888888 88999887
Q ss_pred ecCcchhccCHHHHHHHHHHcCCcEEEecCCChhh----HHHHHHHHHHcCCCeEEE-e-------------------CC
Q 021527 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE----TESLQKEAMKNKIELVLF-T-------------------TP 201 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee----~~~~~~~~~~~gi~~I~l-i-------------------sp 201 (311)
|=.+ . +-++.+.+.|++-|++.-+.+++ ...+.+.++++|-+.|.+ + +.
T Consensus 90 GGIR------~-e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~ 162 (262)
T PLN02446 90 GGVN------S-ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSD 162 (262)
T ss_pred CCcc------H-HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCC
Confidence 6321 2 45677889999999998877776 677788888887433322 1 12
Q ss_pred CChHHHHHHHHHh-CCceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc--CCcEEE
Q 021527 202 TTPTDRMKAIVEA-SEGFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW--GADGVI 277 (311)
Q Consensus 202 ~t~~eri~~i~~~-a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~--GADGvI 277 (311)
.++.+.+.+..+. ...|+|. ++..|+ ..+.+ .++++++++.+++||++.+||++.+|+.++.+. |.+|+|
T Consensus 163 ~~~~e~~~~~~~~g~~eii~TdI~rDGt---l~G~d---~el~~~l~~~~~ipVIASGGv~sleDi~~L~~~g~g~~gvI 236 (262)
T PLN02446 163 LAVDEETLEFLAAYCDEFLVHGVDVEGK---RLGID---EELVALLGEHSPIPVTYAGGVRSLDDLERVKVAGGGRVDVT 236 (262)
T ss_pred CCHHHHHHHHHHhCCCEEEEEEEcCCCc---ccCCC---HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCCEEEE
Confidence 2333444444443 4567777 666552 33333 367888888899999999999999999999997 579999
Q ss_pred EhhHhh
Q 021527 278 VGSAMV 283 (311)
Q Consensus 278 VGSaiv 283 (311)
||+|+.
T Consensus 237 vGkAl~ 242 (262)
T PLN02446 237 VGSALD 242 (262)
T ss_pred EEeeHH
Confidence 999993
No 89
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=99.09 E-value=1.2e-08 Score=90.63 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=114.2
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~ 153 (311)
+.+...+.++.+.++|+++||+- +++| ...+.++.++++. ++++...+-.+
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~--~~~~----------------------~~~~~i~~l~~~~~~~~iGag~v~~---- 65 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEIT--LRTP----------------------GALEAIRALRKEFPEALIGAGTVLT---- 65 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEe--CCCh----------------------hHHHHHHHHHHHCCCCEEEEEeCCC----
Confidence 35888999999999999999995 2221 1234677777664 35555543221
Q ss_pred cCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCC
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARAS 233 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~ 233 (311)
.+-++.+.++|+|+++.|... .++.+.++++|+..++-++ |+.| +.+. ...|+.|+.- .. .
T Consensus 66 ---~~~~~~a~~~Ga~~i~~p~~~----~~~~~~~~~~~~~~i~gv~--t~~e-~~~A--~~~Gad~i~~-~p---~--- 126 (190)
T cd00452 66 ---PEQADAAIAAGAQFIVSPGLD----PEVVKAANRAGIPLLPGVA--TPTE-IMQA--LELGADIVKL-FP---A--- 126 (190)
T ss_pred ---HHHHHHHHHcCCCEEEcCCCC----HHHHHHHHHcCCcEECCcC--CHHH-HHHH--HHCCCCEEEE-cC---C---
Confidence 456788999999999988543 3466777888887766554 5544 3333 2367777642 11 1
Q ss_pred CCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 234 ISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 234 ~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
++...++++.+++.. ++|+++-+|| +++++.++++.|+|++.+||.+.+.
T Consensus 127 -~~~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~~~ 177 (190)
T cd00452 127 -EAVGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLPKD 177 (190)
T ss_pred -cccCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcchh
Confidence 111346888888876 5999999999 6999999999999999999999853
No 90
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.07 E-value=6.1e-08 Score=87.92 Aligned_cols=193 Identities=19% Similarity=0.212 Sum_probs=128.9
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPI 142 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPi 142 (311)
.+++-+- .++.++..+.+++|.++|+++||++ ++.| +.++.+++++++. ++-|
T Consensus 16 ~~iaV~r--~~~~~~a~~i~~al~~~Gi~~iEit--l~~~----------------------~~~~~I~~l~~~~p~~~I 69 (212)
T PRK05718 16 PVVPVIV--INKLEDAVPLAKALVAGGLPVLEVT--LRTP----------------------AALEAIRLIAKEVPEALI 69 (212)
T ss_pred CEEEEEE--cCCHHHHHHHHHHHHHcCCCEEEEe--cCCc----------------------cHHHHHHHHHHHCCCCEE
Confidence 3555554 4567999999999999999999998 5544 2245777777653 3445
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
+.-+-.+ .+-++.+.++|++=++.|.+.. ++.+.|+++|+..++-+ .|+.| +....+..-.++-+-
T Consensus 70 GAGTVl~-------~~~a~~a~~aGA~FivsP~~~~----~vi~~a~~~~i~~iPG~--~TptE-i~~a~~~Ga~~vKlF 135 (212)
T PRK05718 70 GAGTVLN-------PEQLAQAIEAGAQFIVSPGLTP----PLLKAAQEGPIPLIPGV--STPSE-LMLGMELGLRTFKFF 135 (212)
T ss_pred EEeeccC-------HHHHHHHHHcCCCEEECCCCCH----HHHHHHHHcCCCEeCCC--CCHHH-HHHHHHCCCCEEEEc
Confidence 5544333 3568889999999999998753 46677888998887654 35545 444434333333332
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHH
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~ 301 (311)
.. +..| . ..+++.++... ++|++.-+||+ ++++.+.++.|+..++.||.+++.-.- .+...+++++
T Consensus 136 Pa-~~~g-----g---~~~lk~l~~p~p~~~~~ptGGV~-~~ni~~~l~ag~v~~vggs~L~~~~~~---~~~~~~~i~~ 202 (212)
T PRK05718 136 PA-EASG-----G---VKMLKALAGPFPDVRFCPTGGIS-PANYRDYLALPNVLCIGGSWMVPKDAI---ENGDWDRITR 202 (212)
T ss_pred cc-hhcc-----C---HHHHHHHhccCCCCeEEEeCCCC-HHHHHHHHhCCCEEEEEChHhCCcchh---ccccHHHHHH
Confidence 10 1111 1 26788888865 69999999997 799999999997777778998752110 1223456666
Q ss_pred HHHHHHhh
Q 021527 302 FAKSLKSA 309 (311)
Q Consensus 302 ~~~~l~~~ 309 (311)
.++++.+.
T Consensus 203 ~a~~~~~~ 210 (212)
T PRK05718 203 LAREAVAL 210 (212)
T ss_pred HHHHHHHh
Confidence 66665443
No 91
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.06 E-value=2.3e-08 Score=101.18 Aligned_cols=179 Identities=21% Similarity=0.216 Sum_probs=119.1
Q ss_pred EEEEEeCCCCC----hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 65 LIPYITAGDPD----LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 65 li~yi~~G~P~----~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
+-.|++..+.. .+.+.+.++.+.++|+++|.| +++-.|...+.+. .+.+.++.++.++
T Consensus 291 ~~ly~it~~~~~~~~~~~~~~~l~~~l~~Gv~~vql----R~k~~~~~~~~~~--------------a~~l~~~~~~~~~ 352 (502)
T PLN02898 291 LFLYAVTDSGMNKKWGRSTVDAVRAAIEGGATIVQL----REKEAETREFIEE--------------AKACLAICRSYGV 352 (502)
T ss_pred ceEEEEECccccccccchHHHHHHHHHHcCCCEEEE----ccCCCCHHHHHHH--------------HHHHHHHHHHhCC
Confidence 33466544322 145778899999999999999 4555554333221 1223333345678
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
++++ .++.+.+.+.|+|||+++ |++..+..+ ..+-+.++-++..+.++- ... ...|+
T Consensus 353 ~lii------------nd~~~lA~~~~adGvHl~~~d~~~~~~r~------~~~~~~~iG~S~h~~~e~-~~a--~~~ga 411 (502)
T PLN02898 353 PLLI------------NDRVDVALACDADGVHLGQSDMPVRLARS------LLGPGKIIGVSCKTPEQA-EQA--WKDGA 411 (502)
T ss_pred EEEE------------cChHHHHHhcCCCEEEeChHhcCHHHHHH------hcCCCCEEEEeCCCHHHH-HHH--hhcCC
Confidence 8888 345777888999999997 666444332 235556776777776553 232 23566
Q ss_pred EEEE--ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCc---EEEEhhHhhc
Q 021527 219 VYLV--SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGAD---GVIVGSAMVK 284 (311)
Q Consensus 219 iY~v--s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GAD---GvIVGSaiv~ 284 (311)
.|+. +.. .|.++...++--.+.++.+++..++||++=+||+ ++++.++.+.|+| ||.|+|++.+
T Consensus 412 dyi~~gpif-~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI~-~~~~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 412 DYIGCGGVF-PTNTKANNKTIGLDGLREVCEASKLPVVAIGGIS-ASNAASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred CEEEECCee-cCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCCC-HHHHHHHHHcCCCcCceEEEEeHHhc
Confidence 6662 333 3555443333335778888888899999999996 8999999999999 9999999986
No 92
>PRK08999 hypothetical protein; Provisional
Probab=99.06 E-value=1.2e-08 Score=96.73 Aligned_cols=164 Identities=13% Similarity=0.107 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~ 157 (311)
.+.+.++.+.++|++.|++ ++|-+|-..+.+ ..+.++++.+..++++++.
T Consensus 145 ~~~~~~~~~l~~g~~~vql----R~k~~~~~~~~~--------------~~~~l~~~~~~~~~~liin------------ 194 (312)
T PRK08999 145 AFLARLERALAAGIRLIQL----RAPQLPPAAYRA--------------LARAALGLCRRAGAQLLLN------------ 194 (312)
T ss_pred HHHHHHHHHHHCCCcEEEE----eCCCCCHHHHHH--------------HHHHHHHHHHHhCCEEEEE------------
Confidence 5678888888999999999 565444322221 2234444445678899984
Q ss_pred HHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCccCCCCCC
Q 021527 158 NFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVTGARASI 234 (311)
Q Consensus 158 ~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~TG~~~~~ 234 (311)
++.+.+.+.|+|||+++ |++..+. ++.+-+.+..+|..+.++. .+.. ..|..|+. +-.-.|.++.+.
T Consensus 195 d~~~la~~~~~~GvHl~~~d~~~~~~-------r~~~~~~~ig~S~h~~~~~-~~a~--~~~~dyi~~gpvf~t~tk~~~ 264 (312)
T PRK08999 195 GDPELAEDLGADGVHLTSAQLAALAA-------RPLPAGRWVAASCHDAEEL-ARAQ--RLGVDFAVLSPVQPTASHPGA 264 (312)
T ss_pred CcHHHHHhcCCCEEEcChhhcChHhh-------ccCCCCCEEEEecCCHHHH-HHHH--hcCCCEEEECCCcCCCCCCCC
Confidence 35677888999999998 5654332 2235456776776666553 3322 34666662 322345555444
Q ss_pred CchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 235 SGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 235 ~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
++--.+.++++++.+++||++=+|| +++++.++.+.|||||.+-|+|
T Consensus 265 ~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~~ 311 (312)
T PRK08999 265 APLGWEGFAALIAGVPLPVYALGGL-GPGDLEEAREHGAQGIAGIRGL 311 (312)
T ss_pred CCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHhCCCEEEEEEEe
Confidence 4333567888888889999999999 5899999999999999998876
No 93
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=99.03 E-value=9.9e-09 Score=92.49 Aligned_cols=177 Identities=18% Similarity=0.248 Sum_probs=112.4
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc--EEEEe
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP--IALFT 146 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP--iilm~ 146 (311)
+-...++.++.+++++.+.+. ++++|+|.|| + +..| .++++++|+...+| +-+|-
T Consensus 8 ~alD~~~~~~~~~~~~~~~~~-~~~vk~g~~l---------~-------~~~G------~~~v~~ir~~~~i~~D~k~~d 64 (215)
T PRK13813 8 LALDVTDRERALKIAEELDDY-VDAIKVGWPL---------V-------LASG------LGIIEELKRYAPVIADLKVAD 64 (215)
T ss_pred EEeCCCCHHHHHHHHHhcccc-CCEEEEcHHH---------H-------HhhC------HHHHHHHHhcCCEEEEeeccc
Confidence 345788899999999888654 7999999666 1 1122 35777887765555 33332
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCCh-hhHHHHHHHHHHcCCCeEEEeCCCCh------HHHHHHHHHh--CCc
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL-EETESLQKEAMKNKIELVLFTTPTTP------TDRMKAIVEA--SEG 217 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~-ee~~~~~~~~~~~gi~~I~lisp~t~------~eri~~i~~~--a~g 217 (311)
..|+ .+.+++.+.++|+|.+.++=... +...++.+.++++|+.....+.|.++ .+.+..+... ..|
T Consensus 65 i~~~-----~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G 139 (215)
T PRK13813 65 IPNT-----NRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAG 139 (215)
T ss_pred cHHH-----HHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 2222 24466888899999999975442 33667888899999987766666542 1222222221 234
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCc-EEEeeCCCCH-HHHHHHHHcCCcEEEEhhHhhc
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESSTKP-VAVGFGISKP-EHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~P-v~vGfGIst~-e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|. |.. .++...+.++++|+..+.+ .++-+||+.. .++.++.+.|||++|+|+++.+
T Consensus 140 ~~---------g~~--~~~~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~ 197 (215)
T PRK13813 140 AF---------GVV--APATRPERVRYIRSRLGDELKIISPGIGAQGGKAADAIKAGADYVIVGRSIYN 197 (215)
T ss_pred CC---------eEE--ECCCcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHHHcCCCEEEECcccCC
Confidence 32 111 1111235577777765433 2266699742 1488999999999999999886
No 94
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.03 E-value=1.1e-08 Score=92.65 Aligned_cols=159 Identities=25% Similarity=0.317 Sum_probs=105.0
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc--CCCCCCCCChHHHHHHHHHHHHcC----CCHHHHHHHHHHh
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG--VPYSDPLADGPVIQAAATRSLARG----TNFNAILSMLKEV 134 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG--~PfsDP~aDGp~Iq~a~~~Al~~G----~~~~~~~~~i~~i 134 (311)
.+..++.-|..++| +.+.+.++.+.++|+|.|||. -|.+.-.-| +.| -+.+.+.++++++
T Consensus 53 ~~~p~~~qi~g~~~--~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~------------~~G~~l~~~~~~~~eii~~v 118 (231)
T cd02801 53 EERPLIVQLGGSDP--ETLAEAAKIVEELGADGIDLNMGCPSPKVTKG------------GAGAALLKDPELVAEIVRAV 118 (231)
T ss_pred cCCCEEEEEcCCCH--HHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCC------------CeeehhcCCHHHHHHHHHHH
Confidence 34567777766666 789999999999999999994 332211111 112 2556678899999
Q ss_pred hccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHh
Q 021527 135 VPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEA 214 (311)
Q Consensus 135 r~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~ 214 (311)
++...+|+.+-.-. |. +.. ++..++.+.+.+.|++.+.+ +..+..+
T Consensus 119 ~~~~~~~v~vk~r~------~~------------------~~~-~~~~~~~~~l~~~Gvd~i~v-~~~~~~~-------- 164 (231)
T cd02801 119 REAVPIPVTVKIRL------GW------------------DDE-EETLELAKALEDAGASALTV-HGRTREQ-------- 164 (231)
T ss_pred HHhcCCCEEEEEee------cc------------------CCc-hHHHHHHHHHHHhCCCEEEE-CCCCHHH--------
Confidence 88777787774211 10 000 34555555566666655543 2222111
Q ss_pred CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhc
Q 021527 215 SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVK 284 (311)
Q Consensus 215 a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~ 284 (311)
+..+ +. ..+.++++++.+++||++.+||++++++.++++. |||+|.+|.+++.
T Consensus 165 -----------~~~~-----~~-~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 165 -----------RYSG-----PA-DWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred -----------cCCC-----CC-CHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 0011 11 2367888999899999999999999999999997 8999999999886
No 95
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=99.01 E-value=6.8e-08 Score=89.85 Aligned_cols=189 Identities=20% Similarity=0.253 Sum_probs=115.8
Q ss_pred cCCccEEEEEeCCCCCh------hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 021527 60 QGKVALIPYITAGDPDL------STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKE 133 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~------~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ 133 (311)
.++..+|.=+=--.|.. ....++++.+.++||++|-+- .||-.=| .-++.+..
T Consensus 45 ~~~~~vIAEiKraSPs~G~i~~~~d~~~~a~~y~~~GA~aiSVl---Te~~~F~------------------Gs~~dL~~ 103 (254)
T PF00218_consen 45 EGRISVIAEIKRASPSKGDIREDFDPAEIAKAYEEAGAAAISVL---TEPKFFG------------------GSLEDLRA 103 (254)
T ss_dssp TSS-EEEEEE-SEETTTEESBSS-SHHHHHHHHHHTT-SEEEEE-----SCCCH------------------HHHHHHHH
T ss_pred CCCCeEEEEeecCCCCCCccCccCCHHHHHHHHHhcCCCEEEEE---CCCCCCC------------------CCHHHHHH
Confidence 47778888663333432 256899999999999999995 5553222 22567888
Q ss_pred hhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHH
Q 021527 134 VVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAI 211 (311)
Q Consensus 134 ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i 211 (311)
+|+.+++|+.-- ++... +--+..++.+|||+|++. =|+.+...++.+.++..|++.+.=+ ++. +.++..
T Consensus 104 v~~~~~~PvL~K----DFIid--~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEV--h~~-~El~~a 174 (254)
T PF00218_consen 104 VRKAVDLPVLRK----DFIID--PYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEV--HNE-EELERA 174 (254)
T ss_dssp HHHHSSS-EEEE----S---S--HHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEE--SSH-HHHHHH
T ss_pred HHHHhCCCcccc----cCCCC--HHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEE--CCH-HHHHHH
Confidence 888899998773 22211 224567889999997774 3444556899999999999877654 343 444444
Q ss_pred HHhCCceEEEEe-cCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 212 VEASEGFVYLVS-SIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 212 ~~~a~gfiY~vs-~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
...... +.-+- +.=.| +..++ +...++.... +..++...||++++++..+.++|+|||.||++|++.
T Consensus 175 l~~~a~-iiGINnRdL~t-----f~vd~-~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 175 LEAGAD-IIGINNRDLKT-----FEVDL-NRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp HHTT-S-EEEEESBCTTT-----CCBHT-HHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTS
T ss_pred HHcCCC-EEEEeCccccC-----cccCh-HHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 333222 22232 11111 12221 2333444432 477889999999999999999999999999999984
No 96
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.01 E-value=5.4e-08 Score=96.38 Aligned_cols=184 Identities=17% Similarity=0.111 Sum_probs=117.1
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCC-CCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSD-PLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsD-P~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
..+|+=| .|.++.+.+.+.++.+++.|+|+|||.+-... +...| .- -.-+.+.+.+.++++.+++.+++|
T Consensus 100 ~p~i~si-~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~------~g--~~~~~~~~~~~~i~~~v~~~~~~P 170 (420)
T PRK08318 100 RALIASI-MVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERG------MG--SAVGQVPELVEMYTRWVKRGSRLP 170 (420)
T ss_pred ceEEEEe-ccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccC------Cc--ccccCCHHHHHHHHHHHHhccCCc
Confidence 3344433 47777899999999999999999999754422 11100 00 001245667778999999888999
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
|.+-.-.|. ..+.++++.+.++|+|||++-+--... .+++ +.+. .....+ ....+
T Consensus 171 v~vKl~p~~---~~~~~~a~~~~~~Gadgi~~~Nt~~~~----------~~id------~~~~-~~~p~~-~~~~~---- 225 (420)
T PRK08318 171 VIVKLTPNI---TDIREPARAAKRGGADAVSLINTINSI----------TGVD------LDRM-IPMPIV-NGKSS---- 225 (420)
T ss_pred EEEEcCCCc---ccHHHHHHHHHHCCCCEEEEecccCcc----------cccc------cccc-CCCcee-cCCCC----
Confidence 998754331 135677888888999998765321100 0111 0000 000000 00000
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC---CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS---TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~---~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.-|.+|. .+.+-..++|.++++.+ ++||+.-+||.|.+|+.+.+.+|||+|-|||+++.
T Consensus 226 --~gg~SG~--a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~ 287 (420)
T PRK08318 226 --HGGYCGP--AVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ 287 (420)
T ss_pred --cccccch--hhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeecc
Confidence 1134443 22233457899998876 79999999999999999999999999999999886
No 97
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=99.01 E-value=2.9e-08 Score=91.83 Aligned_cols=189 Identities=19% Similarity=0.299 Sum_probs=125.6
Q ss_pred cCCccEEEEEeCCCCChh------hHHHHHHHHHHCCCCEEEEcCCCCCC-CCChHHHHHHHHHHHHcCCCHHHHHHHHH
Q 021527 60 QGKVALIPYITAGDPDLS------TTAEALKLLDSCGSDIIELGVPYSDP-LADGPVIQAAATRSLARGTNFNAILSMLK 132 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~~------~~~e~~~~L~~~GaD~IElG~PfsDP-~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~ 132 (311)
.++..+|.=+=---|+.. .-.++++.++++|+++|-+= +|| +-+| + ++.++
T Consensus 43 ~~~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVL---Td~~~F~G---------------s----~e~L~ 100 (254)
T COG0134 43 SGKPAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVL---TDPKYFQG---------------S----FEDLR 100 (254)
T ss_pred CCCceEEEEeecCCCCCCcccccCCHHHHHHHHHHhCCeEEEEe---cCccccCC---------------C----HHHHH
Confidence 478899987733344332 34679999999999999993 333 2233 1 46888
Q ss_pred HhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHH
Q 021527 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKA 210 (311)
Q Consensus 133 ~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~ 210 (311)
.+|+.+.+||..-=+ ..- .-.+..+...|+|.|++. =|..++..++...++..|++.+.=+. + .+.++.
T Consensus 101 ~v~~~v~~PvL~KDF----iiD--~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh--~-~eEl~r 171 (254)
T COG0134 101 AVRAAVDLPVLRKDF----IID--PYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVH--N-EEELER 171 (254)
T ss_pred HHHHhcCCCeeeccC----CCC--HHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEEC--C-HHHHHH
Confidence 999999999877422 111 235778889999998775 35556689999999999999765443 2 344444
Q ss_pred HHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 211 IVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 211 i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
..+.....|= +-....+ .+..++ +...++.... +.-++...||++++++.++.++||||+.|||++++.
T Consensus 172 Al~~ga~iIG-INnRdL~----tf~vdl-~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 172 ALKLGAKIIG-INNRDLT----TLEVDL-ETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRA 242 (254)
T ss_pred HHhCCCCEEE-EeCCCcc----hheecH-HHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcC
Confidence 4443333321 1111111 112222 2233343332 467889999999999999999999999999999994
No 98
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.00 E-value=5e-08 Score=92.37 Aligned_cols=176 Identities=20% Similarity=0.221 Sum_probs=112.6
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCC-CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCG-SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~G-aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
..+|+=|..- +.+.+.+.++.++++| +|+|||.+ +-|...+- ....+.+.+.+.++++.+|+.+++|
T Consensus 92 ~p~i~si~g~--~~~~~~~~a~~~~~aG~~D~iElN~--~cP~~~~g--------g~~~~~~~~~~~eiv~~vr~~~~~p 159 (301)
T PRK07259 92 TPIIANVAGS--TEEEYAEVAEKLSKAPNVDAIELNI--SCPNVKHG--------GMAFGTDPELAYEVVKAVKEVVKVP 159 (301)
T ss_pred CcEEEEeccC--CHHHHHHHHHHHhccCCcCEEEEEC--CCCCCCCC--------ccccccCHHHHHHHHHHHHHhcCCC
Confidence 4455555332 4589999999999999 99999954 22322210 0112345667788999999888999
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
|.+-.-.+. ....++++.+.++|+|++.+.+-.. |.. +...+....+ ...
T Consensus 160 v~vKl~~~~---~~~~~~a~~l~~~G~d~i~~~nt~~-------------g~~----~~~~~~~~~~----~~~------ 209 (301)
T PRK07259 160 VIVKLTPNV---TDIVEIAKAAEEAGADGLSLINTLK-------------GMA----IDIKTRKPIL----ANV------ 209 (301)
T ss_pred EEEEcCCCc---hhHHHHHHHHHHcCCCEEEEEcccc-------------ccc----cccccCceee----cCC------
Confidence 988532211 1234567777788888876643210 110 0001000000 000
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.-|.+|. .+.+-..++++++++.+++||+..+||++++++.+++..|||+|-||++++.
T Consensus 210 --~gg~sg~--~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~ 268 (301)
T PRK07259 210 --TGGLSGP--AIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY 268 (301)
T ss_pred --cCccCCc--CcccccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc
Confidence 0112222 1222345789999998899999999999999999999999999999999987
No 99
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.98 E-value=1.1e-07 Score=85.69 Aligned_cols=191 Identities=19% Similarity=0.208 Sum_probs=129.3
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEE
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIA 143 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPii 143 (311)
+++-+-. .+.++..+.+++|.++|++.+|+- ++.| +.++.+++++++. ++.|+
T Consensus 10 liaVlr~--~~~e~a~~~~~al~~~Gi~~iEit--~~t~----------------------~a~~~i~~l~~~~~~~~vG 63 (204)
T TIGR01182 10 IVPVIRI--DDVDDALPLAKALIEGGLRVLEVT--LRTP----------------------VALDAIRLLRKEVPDALIG 63 (204)
T ss_pred EEEEEec--CCHHHHHHHHHHHHHcCCCEEEEe--CCCc----------------------cHHHHHHHHHHHCCCCEEE
Confidence 5555542 356899999999999999999995 3333 3356777777653 45566
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
.-+-.+ .+-++.+.++|++-++-|.+.. ++.+.|+++|+..++-+ .|+.|-...+ +..-.++=+-.
T Consensus 64 AGTVl~-------~~~a~~a~~aGA~FivsP~~~~----~v~~~~~~~~i~~iPG~--~TptEi~~A~-~~Ga~~vKlFP 129 (204)
T TIGR01182 64 AGTVLN-------PEQLRQAVDAGAQFIVSPGLTP----ELAKHAQDHGIPIIPGV--ATPSEIMLAL-ELGITALKLFP 129 (204)
T ss_pred EEeCCC-------HHHHHHHHHcCCCEEECCCCCH----HHHHHHHHcCCcEECCC--CCHHHHHHHH-HCCCCEEEECC
Confidence 554433 3568889999999998887742 47778999999888754 4555654433 32223332211
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHH
Q 021527 224 SIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKF 302 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~ 302 (311)
. +..|. ..+++.+|.-. ++|++.-+||+ ++|+.+.+++|+.++.+||.+++.-.- .+...+++++.
T Consensus 130 A-~~~GG--------~~yikal~~plp~i~~~ptGGV~-~~N~~~~l~aGa~~vg~Gs~L~~~~~~---~~~~~~~i~~~ 196 (204)
T TIGR01182 130 A-EVSGG--------VKMLKALAGPFPQVRFCPTGGIN-LANVRDYLAAPNVACGGGSWLVPKDLI---AAGDWDEITRL 196 (204)
T ss_pred c-hhcCC--------HHHHHHHhccCCCCcEEecCCCC-HHHHHHHHhCCCEEEEEChhhcCchhh---ccccHHHHHHH
Confidence 0 11110 26899998865 79999999997 799999999999999999999862210 12234566666
Q ss_pred HHHHHh
Q 021527 303 AKSLKS 308 (311)
Q Consensus 303 ~~~l~~ 308 (311)
++++..
T Consensus 197 a~~~~~ 202 (204)
T TIGR01182 197 AREALE 202 (204)
T ss_pred HHHHHh
Confidence 666543
No 100
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=98.97 E-value=3.5e-08 Score=96.77 Aligned_cols=213 Identities=17% Similarity=0.195 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHc-CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcC--CCCCCCCChHHHHHHHHHHHHcCCCHH
Q 021527 49 GLAETFTRLKKQ-GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGV--PYSDPLADGPVIQAAATRSLARGTNFN 125 (311)
Q Consensus 49 ~i~~~f~~~~~~-~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~--PfsDP~aDGp~Iq~a~~~Al~~G~~~~ 125 (311)
++++ +.+++++ ....+|.=|. |--+.+.+.+.++.+++.|+|+|||.+ |...+..++ ....|.+.+
T Consensus 100 ~l~~-i~~~k~~~~~~pvIaSi~-~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~---------g~~~gq~~e 168 (385)
T PLN02495 100 MLAE-FKQLKEEYPDRILIASIM-EEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKM---------GAAVGQDCD 168 (385)
T ss_pred HHHH-HHHHHhhCCCCcEEEEcc-CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCcc---------chhhccCHH
Confidence 3444 3444433 2234554443 434669999999999999999999975 333322221 111234555
Q ss_pred HHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 126 AILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 126 ~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
-+-++++.+++.+++|+++----| . ..+..+++.+.+.|+|||+.-+--.. ..+++ +.+..
T Consensus 169 ~~~~i~~~Vk~~~~iPv~vKLsPn--~-t~i~~ia~aa~~~Gadgi~liNT~~~----------~~~ID------~~t~~ 229 (385)
T PLN02495 169 LLEEVCGWINAKATVPVWAKMTPN--I-TDITQPARVALKSGCEGVAAINTIMS----------VMGIN------LDTLR 229 (385)
T ss_pred HHHHHHHHHHHhhcCceEEEeCCC--h-hhHHHHHHHHHHhCCCEEEEecccCc----------ccccc------cccCc
Confidence 555666777877889999875433 1 13567888899999999987642110 01111 11100
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC------CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS------TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~------~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
... .+ .+. ...-|.+|. .+.+-....+.++++.+ ++||+.-+||.+.+|+.+.+.+|||.|-|+
T Consensus 230 p~~-~~----~~~---~~~GGlSG~--alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~ 299 (385)
T PLN02495 230 PEP-CV----EGY---STPGGYSSK--AVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVC 299 (385)
T ss_pred ccc-cc----CCC---CCCCCccch--hhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEe
Confidence 000 00 000 001123332 23333334455555543 489999999999999999999999999999
Q ss_pred hHhhchhhhcCC-chhHHHHHHHHHH
Q 021527 280 SAMVKLLGEAQS-PEEGLKELEKFAK 304 (311)
Q Consensus 280 Saiv~~~~~~~~-~~~~~~~~~~~~~ 304 (311)
|+++.. +.. .++..+++.+|++
T Consensus 300 Ta~~~~---Gp~vi~~i~~~L~~~m~ 322 (385)
T PLN02495 300 TGVMMH---GYPLVKNLCAELQDFMK 322 (385)
T ss_pred eeeeec---CcHHHHHHHHHHHHHHH
Confidence 999873 111 2344555666554
No 101
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.95 E-value=1.4e-07 Score=93.42 Aligned_cols=173 Identities=14% Similarity=0.068 Sum_probs=111.7
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEE
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIAL 144 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiil 144 (311)
+-.|.+..+ .++++.+.++|++.|++ +++-.+.....+. ...+.++.++.++++++
T Consensus 211 l~LY~Vtd~------~~~ve~aL~aGv~~VQL----ReK~ls~~el~~l--------------a~~l~~l~~~~gv~LiI 266 (437)
T PRK12290 211 LGLYPVVDD------VEWIERLLPLGINTVQL----RIKDPQQADLEQQ--------------IIRAIALGREYNAQVFI 266 (437)
T ss_pred ceEEEEeCC------HHHHHHHHhCCCCEEEE----eCCCCCHHHHHHH--------------HHHHHHHHHHhCCEEEE
Confidence 335765543 25688999999999999 4554454332221 12333444567899998
Q ss_pred EecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE-
Q 021527 145 FTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL- 221 (311)
Q Consensus 145 m~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~- 221 (311)
. ++.+.+.+.|+|||+++ |++..+...+ .|-..++-+|..+.+|. .+... .|..|+
T Consensus 267 N------------D~~dlAl~~gAdGVHLGQeDL~~~~aR~i------lg~~~iIGvStHs~eEl-~~A~~--~gaDYI~ 325 (437)
T PRK12290 267 N------------DYWQLAIKHQAYGVHLGQEDLEEANLAQL------TDAGIRLGLSTHGYYEL-LRIVQ--IQPSYIA 325 (437)
T ss_pred E------------CHHHHHHHcCCCEEEcChHHcchhhhhhh------cCCCCEEEEecCCHHHH-HHHhh--cCCCEEE
Confidence 3 45777888999999997 6765443322 23345666776665553 33323 455565
Q ss_pred -EecCCccCCCC-CCCchHHHHHHHHhhcC---------CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 -VSSIGVTGARA-SISGHVQTLLREIKESS---------TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 -vs~~G~TG~~~-~~~~~~~~~l~~vk~~~---------~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
...+ .|.++. ..++--.+.++++++.. ++|+++=+||+ ++++.++.+.|||||.|=|+|.+
T Consensus 326 lGPIF-pT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~-~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 326 LGHIF-PTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGID-QSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred ECCcc-CCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcC-HHHHHHHHHcCCCEEEEehHhhc
Confidence 3444 344443 23333345566555543 69998888895 89999999999999999999996
No 102
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.95 E-value=8.4e-08 Score=90.76 Aligned_cols=175 Identities=19% Similarity=0.240 Sum_probs=111.6
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCC--CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCG--SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~G--aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
.++.=|... +.+.+.+.++.+.++| +|.|||. ++-|...| +-...+.+.+.+.++++++|+.+++|
T Consensus 92 pl~~qi~g~--~~~~~~~~a~~~~~~~~~~d~ielN--~~cP~~~~--------~g~~l~~~~~~~~eiv~~vr~~~~~p 159 (300)
T TIGR01037 92 PLIASVYGS--SVEEFAEVAEKLEKAPPYVDAYELN--LSCPHVKG--------GGIAIGQDPELSADVVKAVKDKTDVP 159 (300)
T ss_pred cEEEEeecC--CHHHHHHHHHHHHhccCccCEEEEE--CCCCCCCC--------CccccccCHHHHHHHHHHHHHhcCCC
Confidence 355555433 4588999999998864 9999997 45555443 11123456677788999999888899
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~ 221 (311)
|.+-.-.+. ....++++.+.++|+|++.+..--. +.. +- .....+ . . ...
T Consensus 160 v~vKi~~~~---~~~~~~a~~l~~~G~d~i~v~nt~~-------------~~~-~~-~~~~~~--~---~-~~~------ 209 (300)
T TIGR01037 160 VFAKLSPNV---TDITEIAKAAEEAGADGLTLINTLR-------------GMK-ID-IKTGKP--I---L-ANK------ 209 (300)
T ss_pred EEEECCCCh---hhHHHHHHHHHHcCCCEEEEEccCC-------------ccc-cc-cccCce--e---e-CCC------
Confidence 888642110 1234566667778888876642110 000 00 000000 0 0 000
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.-|.+|. ...+-..+.+.++++.+++||+..+||.+++++.+++..|||+|.||++++.
T Consensus 210 --~gg~sg~--~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~ 268 (300)
T TIGR01037 210 --TGGLSGP--AIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYY 268 (300)
T ss_pred --Cccccch--hhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhc
Confidence 0122332 1222235788999998899999999999999999999999999999999986
No 103
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.95 E-value=3.9e-08 Score=93.21 Aligned_cols=178 Identities=18% Similarity=0.186 Sum_probs=111.7
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHC---CCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSC---GSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~---GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
.++.=| .|. .+++.+.++.+++. |+|+|||.+-. |...|- + ..+.+.+.+.++++.+++.+++
T Consensus 93 pvivsi-~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sC--Pn~~~~-------~--~~~~~~~~~~~i~~~v~~~~~i 158 (294)
T cd04741 93 PFFISV-TGS--AEDIAAMYKKIAAHQKQFPLAMELNLSC--PNVPGK-------P--PPAYDFDATLEYLTAVKAAYSI 158 (294)
T ss_pred eEEEEC-CCC--HHHHHHHHHHHHhhccccccEEEEECCC--CCCCCc-------c--cccCCHHHHHHHHHHHHHhcCC
Confidence 344443 355 68999999999885 79999997433 433221 0 1234677888899999999999
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHc--CCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDI--GIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~a--GadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
||.+-.-.+. ....+.++++.+.+. |+|||++.+--.. ++ .+.+. |.+.......+
T Consensus 159 Pv~vKl~p~~-~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~------------~~----~id~~----~~~~~~~~~~~- 216 (294)
T cd04741 159 PVGVKTPPYT-DPAQFDTLAEALNAFACPISFITATNTLGN------------GL----VLDPE----RETVVLKPKTG- 216 (294)
T ss_pred CEEEEeCCCC-CHHHHHHHHHHHhccccCCcEEEEEccCCc------------cc----cccCC----CCCcccCCCCC-
Confidence 9998753221 111234555556566 7888776421100 00 01110 00000000111
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.-|.+|. .+.+...+.++++++.+ ++||+.-+||.|.+|+.+.+.+|||+|-|||+++.
T Consensus 217 -----~gG~SG~--~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~ 277 (294)
T cd04741 217 -----FGGLAGA--YLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK 277 (294)
T ss_pred -----CCCcCch--hhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh
Confidence 1134442 23444567789998887 49999999999999999999999999999999986
No 104
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=98.94 E-value=5.7e-08 Score=89.41 Aligned_cols=182 Identities=20% Similarity=0.245 Sum_probs=124.3
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~ 153 (311)
+.++..++++.|.+.|+|.||+|.|.+.+.. |.+ ++.++.++++++.. ++++..|+-.
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~--p~~--------------~~~~~~i~~l~~~~~~~~~~~l~~~----- 75 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAV--PQM--------------EDDWEVLRAIRKLVPNVKLQALVRN----- 75 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCcccc--ccC--------------CCHHHHHHHHHhccCCcEEEEEccC-----
Confidence 5688999999999999999999999987654 332 23356777887764 6777676531
Q ss_pred cCHHHHHHHHHHcCCcEEEecCCCh----------------hhHHHHHHHHHHcCCCeEEEeCCCC----hH----HHHH
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDVPL----------------EETESLQKEAMKNKIELVLFTTPTT----PT----DRMK 209 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDlp~----------------ee~~~~~~~~~~~gi~~I~lisp~t----~~----eri~ 209 (311)
+ .++++.++++|++.+.+.+-.. ++..+..+.++++|++..+.+...+ +. +.++
T Consensus 76 -~-~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~ 153 (265)
T cd03174 76 -R-EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAK 153 (265)
T ss_pred -c-hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHH
Confidence 2 7789999999999999875432 4466778889999998776653222 22 3344
Q ss_pred HHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEee----CCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 210 AIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAVGF----GISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 210 ~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGf----GIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+.+.....+|+... +|. ..|.++.++++.+++..+ +|+-+=+ |... .+.....++|||.| .+-+.
T Consensus 154 ~~~~~g~~~i~l~Dt---~G~--~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~-an~laA~~aG~~~i---d~s~~ 224 (265)
T cd03174 154 ALEEAGADEISLKDT---VGL--ATPEEVAELVKALREALPDVPLGLHTHNTLGLAV-ANSLAALEAGADRV---DGSVN 224 (265)
T ss_pred HHHHcCCCEEEechh---cCC--cCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHH-HHHHHHHHcCCCEE---Eeccc
Confidence 444444556777654 443 456778999999999765 6665522 4442 45566678999876 44444
Q ss_pred hhhh
Q 021527 285 LLGE 288 (311)
Q Consensus 285 ~~~~ 288 (311)
.+++
T Consensus 225 G~G~ 228 (265)
T cd03174 225 GLGE 228 (265)
T ss_pred cccc
Confidence 4443
No 105
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.94 E-value=6.4e-08 Score=89.80 Aligned_cols=171 Identities=16% Similarity=0.154 Sum_probs=121.3
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.+.|+++||+- | . |+ . | ++.++++.+.+++|+.+-+=.+ . +-
T Consensus 41 ~~~A~~~~~~Ga~~lHvV----D--L-g~------------~-n----~~~i~~i~~~~~~~v~vGGGIr------~-e~ 89 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVI----M--L-GP------------N-N----DDAAKEALHAYPGGLQVGGGIN------D-TN 89 (253)
T ss_pred HHHHHHHHHcCCCEEEEE----E--C-CC------------C-c----HHHHHHHHHhCCCCEEEeCCcC------H-HH
Confidence 689999999999999994 1 1 21 1 2 2578888888889998865322 1 45
Q ss_pred HHHHHHcCCcEEEecCCChhh----HHHHHHHHHHcCCCeEEE---------------e------CCCChH-HHHHHHHH
Q 021527 160 MSTVRDIGIRGLVVPDVPLEE----TESLQKEAMKNKIELVLF---------------T------TPTTPT-DRMKAIVE 213 (311)
Q Consensus 160 i~~~~~aGadGviipDlp~ee----~~~~~~~~~~~gi~~I~l---------------i------sp~t~~-eri~~i~~ 213 (311)
++.+.++|++.+++....+++ ...+.+.++++|-+.|.+ + +..++. +.++++.+
T Consensus 90 v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~ 169 (253)
T TIGR02129 90 AQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSK 169 (253)
T ss_pred HHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHh
Confidence 677888999999998755544 456677778876332221 1 122233 55666655
Q ss_pred hCCceEEE-EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc--CCcEEEEhhHhhchhh
Q 021527 214 ASEGFVYL-VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW--GADGVIVGSAMVKLLG 287 (311)
Q Consensus 214 ~a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~--GADGvIVGSaiv~~~~ 287 (311)
....++|. ++.-|+ .++.+ .++++++++.+++||++.+|+++.+|+.++.+. |..++|+|.++.....
T Consensus 170 ~~~~il~TdI~rDGt---l~G~d---lel~~~l~~~~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~f~~ 240 (253)
T TIGR02129 170 YCDEFLIHAADVEGL---CKGID---EELVSKLGEWSPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDIFGG 240 (253)
T ss_pred hCCEEEEeeecccCc---cccCC---HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHHhCC
Confidence 55566766 666653 22333 367888888899999999999999999999665 6788999999998765
No 106
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=98.89 E-value=6.8e-07 Score=82.76 Aligned_cols=188 Identities=14% Similarity=0.194 Sum_probs=121.9
Q ss_pred CCccEEEEEeCCCCCh------hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 61 GKVALIPYITAGDPDL------STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~------~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
++..+|.=+=.-.|+. -...++++.++++||+.|-+- .||-.-| -+ ++.++++
T Consensus 39 ~~~~vIaEiKr~SPs~G~i~~~~d~~~~A~~y~~~GA~aISVl---Te~~~F~--------------Gs----~~~l~~v 97 (247)
T PRK13957 39 RSFSIIAECKRKSPSAGELRADYHPVQIAKTYETLGASAISVL---TDQSYFG--------------GS----LEDLKSV 97 (247)
T ss_pred CCCeEEEEEecCCCCCCCcCCCCCHHHHHHHHHHCCCcEEEEE---cCCCcCC--------------CC----HHHHHHH
Confidence 3456676553333442 246789999999999999885 4443322 23 3578888
Q ss_pred hccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHH
Q 021527 135 VPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIV 212 (311)
Q Consensus 135 r~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~ 212 (311)
|+.+++||+.-.+.= -+.-+..+..+|||+|++. -++.++..++.+.+...|++.+.=+ ++. +.++...
T Consensus 98 ~~~v~~PvL~KDFIi------d~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEV--h~~-~El~~a~ 168 (247)
T PRK13957 98 SSELKIPVLRKDFIL------DEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEV--HTE-DEAKLAL 168 (247)
T ss_pred HHhcCCCEEeccccC------CHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEE--CCH-HHHHHHH
Confidence 888899988754221 1234556777999998874 5666778999999999999977654 333 3343333
Q ss_pred HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 213 EASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 213 ~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.....+ .-+-..... .+..++ +...++.... +..++...||+|++|+..+.+. +|||.||+++++.
T Consensus 169 ~~ga~i-iGINnRdL~----t~~vd~-~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 169 DCGAEI-IGINTRDLD----TFQIHQ-NLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred hCCCCE-EEEeCCCCc----cceECH-HHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC
Confidence 322233 223211110 111111 2334444443 4667789999999999999987 9999999999994
No 107
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=98.88 E-value=2.6e-07 Score=88.24 Aligned_cols=153 Identities=13% Similarity=0.153 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEe-cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCC
Q 021527 123 NFNAILSMLKEVVPQMSCPIALFT-YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTP 201 (311)
Q Consensus 123 ~~~~~~~~i~~ir~~~~iPiilm~-Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp 201 (311)
+.+++-+.++++|+.++.|+.+.. +..|. .++.++.+.+.|++.|.+.--.+ .++.+.++++|+.++..+
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~----~~~~~~~~~~~~v~~v~~~~g~p---~~~i~~lk~~g~~v~~~v-- 116 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLLSPF----VDELVDLVIEEKVPVVTTGAGNP---GKYIPRLKENGVKVIPVV-- 116 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecCCCC----HHHHHHHHHhCCCCEEEEcCCCc---HHHHHHHHHcCCEEEEEc--
Confidence 445666788888887888987753 22222 35677888999999987742222 246777888898766544
Q ss_pred CChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 202 TTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 202 ~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.+. +..++..+..-+.+.+... -.|...+ .....+++.++++.+++||++.+||.+++++.+++..|||||.+||.
T Consensus 117 ~s~-~~a~~a~~~GaD~Ivv~g~--eagGh~g-~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 117 ASV-ALAKRMEKAGADAVIAEGM--ESGGHIG-ELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGTR 192 (307)
T ss_pred CCH-HHHHHHHHcCCCEEEEECc--ccCCCCC-CCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecchH
Confidence 233 3333333433333333221 1222211 12246789999998899999999999999999999999999999999
Q ss_pred hhchhhh
Q 021527 282 MVKLLGE 288 (311)
Q Consensus 282 iv~~~~~ 288 (311)
|.-..+.
T Consensus 193 f~~t~Es 199 (307)
T TIGR03151 193 FLCAKEC 199 (307)
T ss_pred Hhccccc
Confidence 9987754
No 108
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.87 E-value=1.7e-07 Score=87.96 Aligned_cols=214 Identities=16% Similarity=0.162 Sum_probs=127.5
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCC--hHHHHHHH--------HHHH--HcC---CCHHHHHHHHH
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLAD--GPVIQAAA--------TRSL--ARG---TNFNAILSMLK 132 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aD--Gp~Iq~a~--------~~Al--~~G---~~~~~~~~~i~ 132 (311)
++.+--|+ ....+.++.+.++|+..++++-=+.+|..- .|-+-... ..++ ..| ...+.+++.++
T Consensus 12 v~~aag~~-~~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~~~~~i~ 90 (289)
T cd02810 12 FGVAAGPL-LKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDVWLQDIA 90 (289)
T ss_pred CEeCCCCC-CCCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCHHHHHHHHH
Confidence 33443343 345688888999999999997666554421 11111000 0001 122 24566666666
Q ss_pred Hhhcc-CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe----cCCC--------hhhHHHHHHHHHHc-CCCeEEE
Q 021527 133 EVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV----PDVP--------LEETESLQKEAMKN-KIELVLF 198 (311)
Q Consensus 133 ~ir~~-~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii----pDlp--------~ee~~~~~~~~~~~-gi~~I~l 198 (311)
+.++. .+.|+++-...+... ...+.++.+.+.|+|++-+ |... ++...++.+.+++. ++.+..=
T Consensus 91 ~~~~~~~~~pvi~si~g~~~~--~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vK 168 (289)
T cd02810 91 KAKKEFPGQPLIASVGGSSKE--DYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVK 168 (289)
T ss_pred HHHhccCCCeEEEEeccCCHH--HHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEE
Confidence 66655 578987743322111 1234566777889999876 2211 13355566666654 5555555
Q ss_pred eCCCChHHHHHHHHHh--CCceEEEEecCCccCC--------------CCC-----CCchHHHHHHHHhhcC--CCcEEE
Q 021527 199 TTPTTPTDRMKAIVEA--SEGFVYLVSSIGVTGA--------------RAS-----ISGHVQTLLREIKESS--TKPVAV 255 (311)
Q Consensus 199 isp~t~~eri~~i~~~--a~gfiY~vs~~G~TG~--------------~~~-----~~~~~~~~l~~vk~~~--~~Pv~v 255 (311)
+++..+.+.+.++++. ..|..+++...+..+. ... ..+...++++++|+.+ ++||+.
T Consensus 169 l~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia 248 (289)
T cd02810 169 LSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIG 248 (289)
T ss_pred eCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 6666654444444442 2355555432211110 001 1112357799999988 899999
Q ss_pred eeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 256 GFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 256 GfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+||++++++.+++..|||+|-|||+++.
T Consensus 249 ~GGI~~~~da~~~l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 249 VGGIDSGEDVLEMLMAGASAVQVATALMW 277 (289)
T ss_pred ECCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence 99999999999999999999999999987
No 109
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.86 E-value=1.1e-07 Score=92.10 Aligned_cols=162 Identities=16% Similarity=0.207 Sum_probs=102.2
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC-----CcEEEEecCc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS-----CPIALFTYYN 149 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~-----iPiilm~Y~n 149 (311)
..+++.+.++.+.+ ++|+||+.+ |-|..+|- + .+.+.+.+.++++++|+.++ +||.+-.-.|
T Consensus 155 ~~~d~~~~~~~~~~-~ad~lelN~--scP~~~g~-------~---~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~ 221 (344)
T PRK05286 155 AVDDYLICLEKLYP-YADYFTVNI--SSPNTPGL-------R---DLQYGEALDELLAALKEAQAELHGYVPLLVKIAPD 221 (344)
T ss_pred CHHHHHHHHHHHHh-hCCEEEEEc--cCCCCCCc-------c---cccCHHHHHHHHHHHHHHHhccccCCceEEEeCCC
Confidence 34677777777655 699999984 55655431 1 13445566678888887765 9998865333
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccC
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG 229 (311)
. ....+.++++.+.++|+||+++..-..+ ..++. .+. . ..+ .-|.+|
T Consensus 222 ~-~~~~~~~ia~~l~~~Gadgi~~~nt~~~----------~~~~~-----~~~-----~------~~~------~gg~SG 268 (344)
T PRK05286 222 L-SDEELDDIADLALEHGIDGVIATNTTLS----------RDGLK-----GLP-----N------ADE------AGGLSG 268 (344)
T ss_pred C-CHHHHHHHHHHHHHhCCcEEEEeCCccc----------ccccc-----ccc-----c------CCC------CCCccc
Confidence 1 0012345667777778888777532110 00000 000 0 000 012233
Q ss_pred CCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 230 ARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. .+-+-..++++++++.+ ++||+.-+||.+++++.+++..|||+|-|||+++.
T Consensus 269 ~--~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~ 323 (344)
T PRK05286 269 R--PLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIY 323 (344)
T ss_pred H--HHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 11222456899999887 79999999999999999999999999999999975
No 110
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=98.84 E-value=4.3e-07 Score=88.31 Aligned_cols=208 Identities=18% Similarity=0.232 Sum_probs=120.1
Q ss_pred HHHHHHHHHHcC-CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCC--CCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 50 LAETFTRLKKQG-KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPY--SDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 50 i~~~f~~~~~~~-~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~Pf--sDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
+.+.|...++.. ...+++=|-+..+......+..++++..++|.+|++++. ......| ..+.+.
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g-------------~~~f~~ 173 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEG-------------DRDFRG 173 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCC-------------cccHHH
Confidence 667777777654 455655443322211112334444555689999998644 1101111 134567
Q ss_pred HHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHH
Q 021527 127 ILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTD 206 (311)
Q Consensus 127 ~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~e 206 (311)
+++.++++++.+++||++-.--+. . ..+.++.+.++|+|++.+.... |-..+ ..+
T Consensus 174 ~le~i~~i~~~~~vPVivK~~g~g---~-s~~~a~~l~~~Gvd~I~Vsg~G--------------Gt~~~-------~ie 228 (352)
T PRK05437 174 WLDNIAEIVSALPVPVIVKEVGFG---I-SKETAKRLADAGVKAIDVAGAG--------------GTSWA-------AIE 228 (352)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCC---C-cHHHHHHHHHcCCCEEEECCCC--------------CCCcc-------chh
Confidence 789999999999999998632111 1 1467788888999998775321 10000 001
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
..+.. . ...+.|.. ..| .+ ..+.+.++++. .++||++.+||+++.++.+++..|||+|-+|+++.+.
T Consensus 229 ~~R~~-~-~~~~~~~~-~~g-------~p--t~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 229 NYRAR-D-DRLASYFA-DWG-------IP--TAQSLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred hhhhh-c-cccccccc-ccc-------CC--HHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHH
Confidence 00000 0 00011110 011 12 23456667776 5899999999999999999999999999999999987
Q ss_pred hhhcCCchhHHHHHHHHHHHHHh
Q 021527 286 LGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
+.+.+ +..-.+.++.+.++|+.
T Consensus 297 ~~~~g-~~~v~~~i~~~~~eL~~ 318 (352)
T PRK05437 297 ALEGG-EEAVIELIEQWIEELKI 318 (352)
T ss_pred HHhcc-HHHHHHHHHHHHHHHHH
Confidence 64321 22223345555555554
No 111
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=98.84 E-value=5.2e-07 Score=95.71 Aligned_cols=188 Identities=19% Similarity=0.178 Sum_probs=121.9
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+.+.+.++.+.++|+++|.+ +++-.|....... ..-+.++.++.++++++.
T Consensus 19 ~~~~~~l~~~l~~g~~~iql----R~K~~~~~~~~~~--------------a~~l~~l~~~~~~~liin----------- 69 (755)
T PRK09517 19 EKVAGIVDSAISGGVSVVQL----RDKNAGVEDVRAA--------------AKELKELCDARGVALVVN----------- 69 (755)
T ss_pred ccHHHHHHHHHhcCCCEEEE----eCCCCCHHHHHHH--------------HHHHHHHHHHhCCeEEEe-----------
Confidence 45778888999999999999 5665555333221 223344445567899883
Q ss_pred HHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHH-hCC---ceEEEE-ecCCccC
Q 021527 157 DNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVE-ASE---GFVYLV-SSIGVTG 229 (311)
Q Consensus 157 ~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~-~a~---gfiY~v-s~~G~TG 229 (311)
++.+.+.+.|+| |+++ |+|.++..+. .+-+.++-++..+.++..+..+. ... |..|+. +-.-.|.
T Consensus 70 -d~~~la~~~~~d-VHlg~~dl~~~~~r~~------~~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~ 141 (755)
T PRK09517 70 -DRLDVAVELGLH-VHIGQGDTPYTQARRL------LPAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTA 141 (755)
T ss_pred -ChHHHHHHcCCC-eecCCCcCCHHHHHHh------cCCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccC
Confidence 457788899999 9887 6776554432 24455666777766553221111 121 367773 3223466
Q ss_pred CCCCCCc-hHHHHHHHHhhcCC---CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHH
Q 021527 230 ARASISG-HVQTLLREIKESST---KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKS 305 (311)
Q Consensus 230 ~~~~~~~-~~~~~l~~vk~~~~---~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
++.+..+ --.+.++++++.++ +||++=+||+ ++++.++.+.|||||.|.|++.+. .++...++++.+-++.
T Consensus 142 tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI~-~~~~~~~~~~Ga~giAvisai~~a----~d~~~a~~~l~~~~~~ 216 (755)
T PRK09517 142 TKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGVG-LRNAAELAATGIDGLCVVSAIMAA----ANPAAAARELRTAFQP 216 (755)
T ss_pred CCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCCC-HHHHHHHHHcCCCEEEEehHhhCC----CCHHHHHHHHHHHHHH
Confidence 6544432 23466787777776 9999999995 899999999999999999999862 2344444444444443
Q ss_pred H
Q 021527 306 L 306 (311)
Q Consensus 306 l 306 (311)
+
T Consensus 217 ~ 217 (755)
T PRK09517 217 T 217 (755)
T ss_pred h
Confidence 3
No 112
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.84 E-value=2e-07 Score=95.10 Aligned_cols=197 Identities=14% Similarity=0.131 Sum_probs=128.6
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCC-CHHHHHHHHHHhhccCCCcEEEEecCcchh-----c
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGT-NFNAILSMLKEVVPQMSCPIALFTYYNPIL-----K 153 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~-~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~-----~ 153 (311)
++.++.+.+.|||.|++= ..||- ..|. .-+..+++++++.+++.+|+-+-|=.+.+. .
T Consensus 270 ve~a~~y~~~Gadel~~~------Di~~~----------~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~ 333 (538)
T PLN02617 270 VELAGQYYKDGADEVAFL------NITGF----------RDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRY 333 (538)
T ss_pred HHHHHHHHHcCCCEEEEE------ECCCC----------cCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccc
Confidence 899999999999999983 11210 0000 001236799999999999999976332220 0
Q ss_pred cCHHHHHHHHHHcCCcEEEecCCChhhH------------HHHHHHHHHcCCC-eEEEeCCC------------------
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDVPLEET------------ESLQKEAMKNKIE-LVLFTTPT------------------ 202 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDlp~ee~------------~~~~~~~~~~gi~-~I~lisp~------------------ 202 (311)
+..-+-++.+.++|||-|++.-..++.. ..+.+.++++|=. .+.-+.+.
T Consensus 334 ~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~ 413 (538)
T PLN02617 334 YSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVT 413 (538)
T ss_pred cchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCcccccccccccc
Confidence 0111347888999999999986555432 4466777888865 33333321
Q ss_pred -------------------------ChHHHHHHHHHhCCceEEE--EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE
Q 021527 203 -------------------------TPTDRMKAIVEASEGFVYL--VSSIGVTGARASISGHVQTLLREIKESSTKPVAV 255 (311)
Q Consensus 203 -------------------------t~~eri~~i~~~a~gfiY~--vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v 255 (311)
...+.+++..+..-|-+.+ ++.- |+..+.+ .++++++++.+++||++
T Consensus 414 ~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~D---Gt~~G~d---~~l~~~v~~~~~ipvia 487 (538)
T PLN02617 414 NPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCD---GQGKGFD---IELVKLVSDAVTIPVIA 487 (538)
T ss_pred ccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeecccc---ccccCcC---HHHHHHHHhhCCCCEEE
Confidence 1224556665654454443 3433 3344444 36788888889999999
Q ss_pred eeCCCCHHHHHHHHH-cCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHH
Q 021527 256 GFGISKPEHVQQVAG-WGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKS 305 (311)
Q Consensus 256 GfGIst~e~v~~v~~-~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
.+|+.+++|+.++++ .|||++..+|-|...- ..+.++++++++
T Consensus 488 sGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~-------~~~~~~k~~l~~ 531 (538)
T PLN02617 488 SSGAGTPEHFSDVFSKTNASAALAAGIFHRKE-------VPISSVKEHLLE 531 (538)
T ss_pred ECCCCCHHHHHHHHhcCCccEEEEEeeeccCC-------CCHHHHHHHHHH
Confidence 999999999999997 5689999999887742 235566666653
No 113
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.83 E-value=2e-07 Score=89.21 Aligned_cols=159 Identities=22% Similarity=0.353 Sum_probs=104.0
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcC----CCHHHHHHHHHHhhcc
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG----TNFNAILSMLKEVVPQ 137 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G----~~~~~~~~~i~~ir~~ 137 (311)
...+++=+...+| +.+.+.++.++++|+|+|||.. ..|. . .+. . -..| .+.+-+.++++.+|+.
T Consensus 62 ~~p~i~ql~g~~~--~~~~~aa~~~~~~G~d~IelN~--gcP~--~-~~~---~--~~~Gs~l~~~~~~~~ei~~~vr~~ 129 (319)
T TIGR00737 62 ETPISVQLFGSDP--DTMAEAAKINEELGADIIDINM--GCPV--P-KIT---K--KGAGSALLRDPDLIGKIVKAVVDA 129 (319)
T ss_pred cceEEEEEeCCCH--HHHHHHHHHHHhCCCCEEEEEC--CCCH--H-Hhc---C--CCccchHhCCHHHHHHHHHHHHhh
Confidence 3456666665666 8889999999999999999942 2231 0 000 0 0012 2456778899999988
Q ss_pred CCCcEEEEec--CcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhC
Q 021527 138 MSCPIALFTY--YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEAS 215 (311)
Q Consensus 138 ~~iPiilm~Y--~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a 215 (311)
+++||.+-.- |.. ......+|++.+.++|+|.+.+. ..+. .
T Consensus 130 ~~~pv~vKir~g~~~-~~~~~~~~a~~l~~~G~d~i~vh--------------------------~r~~----------~ 172 (319)
T TIGR00737 130 VDIPVTVKIRIGWDD-AHINAVEAARIAEDAGAQAVTLH--------------------------GRTR----------A 172 (319)
T ss_pred cCCCEEEEEEcccCC-CcchHHHHHHHHHHhCCCEEEEE--------------------------cccc----------c
Confidence 8999877531 110 00113456666666666666542 1110 0
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHH-HcCCcEEEEhhHhhc
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVA-GWGADGVIVGSAMVK 284 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~-~~GADGvIVGSaiv~ 284 (311)
. +..| + ...+.++++|+.+++||++.+||++++++.+++ ..|||+|.+|.+++.
T Consensus 173 ~---------~~~~-----~-~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 173 Q---------GYSG-----E-ANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred c---------cCCC-----c-hhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence 0 1111 1 124789999999999999999999999999999 578999999998774
No 114
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.81 E-value=1.1e-06 Score=80.32 Aligned_cols=171 Identities=16% Similarity=0.175 Sum_probs=117.0
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhh----cc-C
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVV----PQ-M 138 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir----~~-~ 138 (311)
.+++-+..- +.++..+.+++|.++|+..+|+- |+.| +.++.+++++ ++ .
T Consensus 16 ~vi~Vvr~~--~~~~a~~~~~al~~gGi~~iEiT--~~tp----------------------~a~~~i~~l~~~~~~~~p 69 (222)
T PRK07114 16 GMVPVFYHA--DVEVAKKVIKACYDGGARVFEFT--NRGD----------------------FAHEVFAELVKYAAKELP 69 (222)
T ss_pred CEEEEEEcC--CHHHHHHHHHHHHHCCCCEEEEe--CCCC----------------------cHHHHHHHHHHHHHhhCC
Confidence 466666533 55899999999999999999994 4444 1234555554 22 2
Q ss_pred CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 139 SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 139 ~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
++-|..-+-.| .+-++.+.++|++=++-|.+.. ++.+.|+++|+..++.+ .|+.|-+..+ +..-.+
T Consensus 70 ~~~vGaGTVl~-------~e~a~~a~~aGA~FiVsP~~~~----~v~~~~~~~~i~~iPG~--~TpsEi~~A~-~~Ga~~ 135 (222)
T PRK07114 70 GMILGVGSIVD-------AATAALYIQLGANFIVTPLFNP----DIAKVCNRRKVPYSPGC--GSLSEIGYAE-ELGCEI 135 (222)
T ss_pred CeEEeeEeCcC-------HHHHHHHHHcCCCEEECCCCCH----HHHHHHHHcCCCEeCCC--CCHHHHHHHH-HCCCCE
Confidence 34455544333 4567889999999998897753 36778899999888765 3555554333 322223
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCC-HHHHHHHHHcCCcEEEEhhHhhc
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISK-PEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst-~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+=+-.. +.-| ..+++.++.-. ++|++.-+||+- .+|+.+.++.|+.+|.+||.++.
T Consensus 136 vKlFPA-~~~G---------~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~ 193 (222)
T PRK07114 136 VKLFPG-SVYG---------PGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIP 193 (222)
T ss_pred EEECcc-cccC---------HHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcC
Confidence 222110 0111 26899998865 689999999983 48999999999999999999985
No 115
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=98.80 E-value=8e-07 Score=85.52 Aligned_cols=204 Identities=18% Similarity=0.243 Sum_probs=116.3
Q ss_pred HHHHHHHHcCC-ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCC--CCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 52 ETFTRLKKQGK-VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPY--SDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 52 ~~f~~~~~~~~-~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~Pf--sDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
+.|...++... ..++.=+.+..+......+..+..+..++|.+|+++.. ......| ..+.+.++
T Consensus 101 ~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~-------------~~df~~~~ 167 (326)
T cd02811 101 ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEG-------------DRDFRGWL 167 (326)
T ss_pred hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCC-------------CcCHHHHH
Confidence 55666665543 44444332211101122334444444579999998633 1101111 23455677
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE---EeCCCChH
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL---FTTPTTPT 205 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~---lisp~t~~ 205 (311)
+.++.+++.+++||++-.--+ .-..+.++.+.++|+|++.+.... |-.... .-.+...
T Consensus 168 ~~i~~l~~~~~vPVivK~~g~----g~s~~~a~~l~~~Gvd~I~vsG~G--------------Gt~~~~ie~~r~~~~~- 228 (326)
T cd02811 168 ERIEELVKALSVPVIVKEVGF----GISRETAKRLADAGVKAIDVAGAG--------------GTSWARVENYRAKDSD- 228 (326)
T ss_pred HHHHHHHHhcCCCEEEEecCC----CCCHHHHHHHHHcCCCEEEECCCC--------------CCcccccccccccccc-
Confidence 899999999999999864211 012467888999999999875321 000000 0000000
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
++ -+.|.. ..| .+ ..+.+.++++.. ++||++.+||++.+++.+.+..|||+|-+|++|.+
T Consensus 229 ~~---------~~~~~~-~~g-------~~--t~~~l~~~~~~~~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~ 289 (326)
T cd02811 229 QR---------LAEYFA-DWG-------IP--TAASLLEVRSALPDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLK 289 (326)
T ss_pred cc---------cccccc-ccc-------cc--HHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHH
Confidence 00 000110 001 11 234566777766 89999999999999999999999999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHh
Q 021527 285 LLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
.+.+ ..+.-.+.++.+..+|+.
T Consensus 290 ~~~~--g~~~~~~~i~~~~~el~~ 311 (326)
T cd02811 290 AALE--GEEAVIETIEQIIEELRT 311 (326)
T ss_pred HHhc--CHHHHHHHHHHHHHHHHH
Confidence 8754 222234455555556554
No 116
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=98.80 E-value=2.8e-07 Score=82.41 Aligned_cols=184 Identities=19% Similarity=0.262 Sum_probs=103.7
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC---CcEEEEecCcchhccC
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS---CPIALFTYYNPILKRG 155 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~---iPiilm~Y~n~i~~~g 155 (311)
..+.++.+.++|+|++.+=+--..|- -++. +.++++++... -++.++. |+ .
T Consensus 8 ~~ed~~~a~~~Gvd~ig~i~~~~s~R----------------~v~~----~~a~~l~~~~~~~~~~V~v~v--n~----~ 61 (203)
T cd00405 8 TLEDALAAAEAGADAIGFIFAPKSPR----------------YVSP----EQAREIVAALPPFVKRVGVFV--NE----D 61 (203)
T ss_pred CHHHHHHHHHcCCCEEEEecCCCCCC----------------CCCH----HHHHHHHHhCCCCCcEEEEEe--CC----C
Confidence 35788889999999999853222220 0122 23344433221 2344432 32 2
Q ss_pred HHHHHHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE--EecCC----cc
Q 021527 156 VDNFMSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL--VSSIG----VT 228 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~--vs~~G----~T 228 (311)
.+...+.+.+.|+|+|.++ +-+.+....++ +..|.+.+..+..++..+ .........+..|+ -+..+ .|
T Consensus 62 ~~~i~~ia~~~~~d~Vqlhg~e~~~~~~~l~---~~~~~~~i~~i~~~~~~~-~~~~~~~~~~aD~il~dt~~~~~~Gg~ 137 (203)
T cd00405 62 LEEILEIAEELGLDVVQLHGDESPEYCAQLR---ARLGLPVIKAIRVKDEED-LEKAAAYAGEVDAILLDSKSGGGGGGT 137 (203)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHH---hhcCCcEEEEEecCChhh-HHHhhhccccCCEEEEcCCCCCCCCCC
Confidence 3445567788999999998 33334433333 223666663333333222 11111222343444 23211 12
Q ss_pred CCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhchhhhcCCchhHHHHHHHHHHH
Q 021527 229 GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKS 305 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
|. ..+ .+.+++++ .++|+++.+|| +++|+.++.+.| +||+.|+|.+...-+ ....+++++|++.
T Consensus 138 g~--~~~---~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg-----~kd~~ki~~~~~~ 202 (203)
T cd00405 138 GK--TFD---WSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPG-----IKDPEKIRAFIEA 202 (203)
T ss_pred cc--eEC---hHHhhccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCC-----CcCHHHHHHHHHh
Confidence 21 122 24555554 57899999999 599999999998 999999999986421 1345777887764
No 117
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=98.80 E-value=5.7e-07 Score=85.76 Aligned_cols=175 Identities=22% Similarity=0.320 Sum_probs=113.8
Q ss_pred EEEeCCCCChhhHHHHHHHHHHCC-CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE
Q 021527 67 PYITAGDPDLSTTAEALKLLDSCG-SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 67 ~yi~~G~P~~~~~~e~~~~L~~~G-aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm 145 (311)
....-+-|..+.+.+.+..+++.| +|++||.+ |-|-..| .+++ |.+.+.+-++++++++..++||.+-
T Consensus 99 i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNi--ScPnt~g-------~~~l--~~~~e~l~~l~~~vk~~~~~Pv~vK 167 (310)
T COG0167 99 IGKNKGGPSEEAWADYARLLEEAGDADAIELNI--SCPNTPG-------GRAL--GQDPELLEKLLEAVKAATKVPVFVK 167 (310)
T ss_pred eEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEc--cCCCCCC-------hhhh--ccCHHHHHHHHHHHHhcccCceEEE
Confidence 344667788899999999999999 99999984 5565665 1222 2333444556777888888999986
Q ss_pred ecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecC
Q 021527 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSI 225 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~ 225 (311)
-- | ....+.+..+.+.+.|+||++...-... +.. +. ..+..+ . .+.+ .-
T Consensus 168 l~--P-~~~di~~iA~~~~~~g~Dgl~~~NT~~~------------~~~-id-~~~~~~------~--~~~~------~G 216 (310)
T COG0167 168 LA--P-NITDIDEIAKAAEEAGADGLIAINTTKS------------GMK-ID-LETKKP------V--LANE------TG 216 (310)
T ss_pred eC--C-CHHHHHHHHHHHHHcCCcEEEEEeeccc------------ccc-cc-cccccc------c--cCcC------CC
Confidence 32 2 1122344555667777777766531100 000 00 000000 0 0111 11
Q ss_pred CccCCCCCCCchHHHHHHHHhhcCC--CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 226 GVTGARASISGHVQTLLREIKESST--KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~~~~--~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
|.+|. .+.+--.++|+++++.++ +||+-=+||.|.+|+.+.+.+||+.|.|||+++..
T Consensus 217 GLSG~--~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~ 276 (310)
T COG0167 217 GLSGP--PLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYK 276 (310)
T ss_pred CcCcc--cchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeee
Confidence 34443 344445678999999865 99999999999999999999999999999999984
No 118
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=98.79 E-value=6.2e-07 Score=85.13 Aligned_cols=155 Identities=23% Similarity=0.243 Sum_probs=103.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+.+.+.++.+.+.|+|.|++.+=. |. .| .+ ...+.++++++.+++|+++-.-
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~--p~-~~--------------~~--~~~~~i~~l~~~~~~pvivK~v------- 180 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDT--PV-LG--------------RR--LTWDDLAWLRSQWKGPLILKGI------- 180 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC--CC-CC--------------CC--CCHHHHHHHHHhcCCCEEEeec-------
Confidence 55778888999999999999985311 11 11 11 1235788899888899988632
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASI 234 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~ 234 (311)
...+.++.+.++|+|+|++..-. |-. + | +|
T Consensus 181 ~s~~~a~~a~~~G~d~I~v~~~g--------------G~~-----------------------~-~-------~g----- 210 (299)
T cd02809 181 LTPEDALRAVDAGADGIVVSNHG--------------GRQ-----------------------L-D-------GA----- 210 (299)
T ss_pred CCHHHHHHHHHCCCCEEEEcCCC--------------CCC-----------------------C-C-------CC-----
Confidence 11456788899999998876311 100 0 0 11
Q ss_pred CchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhH-HHHHHHHHHHHHh
Q 021527 235 SGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEG-LKELEKFAKSLKS 308 (311)
Q Consensus 235 ~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~-~~~~~~~~~~l~~ 308 (311)
+ ...+.+.++++.. ++||++.+||++++++.+.+..|||+|-||+.++..+...+ .++ .+.++.+.++|+.
T Consensus 211 ~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g--~~~v~~~i~~l~~el~~ 284 (299)
T cd02809 211 P-ATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGG--EAGVAHVLEILRDELER 284 (299)
T ss_pred c-CHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcC--HHHHHHHHHHHHHHHHH
Confidence 1 1235677776655 59999999999999999999999999999999998764211 222 2344445555543
No 119
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=98.79 E-value=1.8e-08 Score=95.21 Aligned_cols=165 Identities=21% Similarity=0.216 Sum_probs=98.2
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCC-hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLAD-GPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aD-Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
.+++.+.++.++ .|+|+|||.+ |-|-.+ ++..+ ...+...++++.+++..++|+++-.-.|.- ..
T Consensus 111 ~~d~~~~a~~~~-~~ad~lElN~--ScPn~~~~~~~~----------~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~-~~ 176 (295)
T PF01180_consen 111 IEDWAELAKRLE-AGADALELNL--SCPNVPGGRPFG----------QDPELVAEIVRAVREAVDIPVFVKLSPNFT-DI 176 (295)
T ss_dssp HHHHHHHHHHHH-HHCSEEEEES--TSTTSTTSGGGG----------GHHHHHHHHHHHHHHHHSSEEEEEE-STSS-CH
T ss_pred HHHHHHHHHHhc-CcCCceEEEe--eccCCCCccccc----------cCHHHHHHHHHHHHhccCCCEEEEecCCCC-ch
Confidence 478999999988 8899999974 334333 22221 111223346666777779999987533211 01
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASI 234 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~ 234 (311)
.....+..+.+.|++||...+-- .....+...+... . ...++- |.+|. .+
T Consensus 177 ~~~~~~~~~~~~g~~gi~~~Nt~----------------~~~~~id~~~~~~----~--~~~~~g------GlSG~--~i 226 (295)
T PF01180_consen 177 EPFAIAAELAADGADGIVAINTF----------------GQGDAIDLETRRP----V--LGNGFG------GLSGP--AI 226 (295)
T ss_dssp HHHHHHHHHHTHTECEEEE---E----------------EEEE-EETTTTEE----S--SSGGEE------EEEEG--GG
T ss_pred HHHHHHHHhhccceeEEEEecCc----------------cCcccccchhcce----e--eccccC------CcCch--hh
Confidence 11234455567888888754210 0011112222100 0 001111 23343 23
Q ss_pred CchHHHHHHHHhhcCC--CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 235 SGHVQTLLREIKESST--KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 235 ~~~~~~~l~~vk~~~~--~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+-..+++.++++.++ +||+..+||.|++|+.+.+.+|||.|-|+|+++.
T Consensus 227 ~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~ 278 (295)
T PF01180_consen 227 RPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIY 278 (295)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHH
T ss_pred hhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhh
Confidence 3445678999999887 9999999999999999999999999999999976
No 120
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=98.79 E-value=1.9e-07 Score=89.22 Aligned_cols=176 Identities=17% Similarity=0.197 Sum_probs=107.2
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCC-CCEEEEcCCCCCCCC-ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCG-SDIIELGVPYSDPLA-DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC 140 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~G-aD~IElG~PfsDP~a-DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i 140 (311)
+.+|.=+ .|+. .+++.+.++.++++| +|+|||.+-. |-. .+.. .|.+.+.+.++++.+++.+++
T Consensus 93 ~pvI~Si-~G~~-~~~~~~~a~~~~~~g~ad~iElN~Sc--Pn~~~~~~----------~g~d~~~~~~i~~~v~~~~~~ 158 (310)
T PRK02506 93 KPHFLSV-VGLS-PEETHTILKKIQASDFNGLVELNLSC--PNVPGKPQ----------IAYDFETTEQILEEVFTYFTK 158 (310)
T ss_pred CCEEEEE-EeCc-HHHHHHHHHHHhhcCCCCEEEEECCC--CCCCCccc----------cccCHHHHHHHHHHHHHhcCC
Confidence 4555555 3432 478889999999998 9999997543 322 2211 245666777899999988899
Q ss_pred cEEEEecCcchhccCHHHHHHHHH---HcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVR---DIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~---~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
|+++-.--|. ....+.+.+. +.|++|+..-. ..+.... +...+ .+. ......+
T Consensus 159 Pv~vKlsp~~----~~~~~a~~~~~~~~~g~~~i~~~n--------------t~~~~~~--iD~~~--~~~--~~~~~~~ 214 (310)
T PRK02506 159 PLGVKLPPYF----DIVHFDQAAAIFNKFPLAFVNCIN--------------SIGNGLV--IDPED--ETV--VIKPKNG 214 (310)
T ss_pred ccEEecCCCC----CHHHHHHHHHHhCcCceEEEEEec--------------cCCCceE--EecCC--CCc--cccCCCC
Confidence 9888643331 1233333333 33444433221 0000011 11111 010 0000010
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.-|.+|. .+.+-..+++.++++.+ ++||+.-+||.|.+|+.+.+.+|||.|-|||+++.
T Consensus 215 ------~GGlSG~--~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~ 275 (310)
T PRK02506 215 ------FGGIGGD--YIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK 275 (310)
T ss_pred ------CCcCCch--hccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence 1134443 34444567888998876 69999999999999999999999999999999987
No 121
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=98.78 E-value=2.1e-07 Score=89.31 Aligned_cols=161 Identities=24% Similarity=0.328 Sum_probs=100.4
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHH-HHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA-ATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a-~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
..+++-+...+| +.+.+.++.+.+.|+|+|+|.+=- |. +.+.+. .-.+| ..+.+.+.++++.+++.+++|
T Consensus 65 ~~~~vQl~g~~~--~~~~~aa~~~~~~g~d~IdlN~gC--P~---~~v~~~g~Gs~l--l~~p~~~~eiv~av~~a~d~p 135 (321)
T PRK10415 65 GIRTVQIAGSDP--KEMADAARINVESGAQIIDINMGC--PA---KKVNRKLAGSAL--LQYPDLVKSILTEVVNAVDVP 135 (321)
T ss_pred CCEEEEEeCCCH--HHHHHHHHHHHHCCCCEEEEeCCC--CH---HHHcCCCcccHH--hcCHHHHHHHHHHHHHhcCCc
Confidence 345555554555 778888888888999999996332 32 001000 00001 135667778888998888899
Q ss_pred EEEEec--CcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 142 IALFTY--YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 142 iilm~Y--~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
+.+-.- |++ ......+|++.+.++|+|.+.+. +.+..+ .
T Consensus 136 v~vKiR~G~~~-~~~~~~~~a~~le~~G~d~i~vh--------------------------~rt~~~----------~-- 176 (321)
T PRK10415 136 VTLKIRTGWAP-EHRNCVEIAQLAEDCGIQALTIH--------------------------GRTRAC----------L-- 176 (321)
T ss_pred eEEEEEccccC-CcchHHHHHHHHHHhCCCEEEEe--------------------------cCcccc----------c--
Confidence 877431 110 00112345555555666555443 111000 0
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhHhhc
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG-WGADGVIVGSAMVK 284 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSaiv~ 284 (311)
.+|. . ..++++++|+.+++||+..+||.|+++++++++ .|||||.+|.++..
T Consensus 177 -------~~G~-----a-~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~ 229 (321)
T PRK10415 177 -------FNGE-----A-EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQG 229 (321)
T ss_pred -------cCCC-----c-ChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhc
Confidence 1111 1 136799999999999999999999999999997 59999999988873
No 122
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.77 E-value=2.8e-07 Score=82.65 Aligned_cols=172 Identities=20% Similarity=0.223 Sum_probs=113.4
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPI 142 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPi 142 (311)
.+++-+..-+ .++..+.+++|.++|+..+|+- |+.| +.++.+++++++ .++-|
T Consensus 9 ~iiaVir~~~--~~~a~~~~~al~~gGi~~iEiT--~~t~----------------------~a~~~I~~l~~~~p~~~v 62 (196)
T PF01081_consen 9 KIIAVIRGDD--PEDAVPIAEALIEGGIRAIEIT--LRTP----------------------NALEAIEALRKEFPDLLV 62 (196)
T ss_dssp SEEEEETTSS--GGGHHHHHHHHHHTT--EEEEE--TTST----------------------THHHHHHHHHHHHTTSEE
T ss_pred CEEEEEEcCC--HHHHHHHHHHHHHCCCCEEEEe--cCCc----------------------cHHHHHHHHHHHCCCCee
Confidence 3666665444 4889999999999999999994 4444 224566666654 34445
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
..-+-.| .+-++.+.++|++=++-|.+. .++.+.|+++|+..++-+. ||.|-...+ +..-.++=+-
T Consensus 63 GAGTV~~-------~e~a~~a~~aGA~FivSP~~~----~~v~~~~~~~~i~~iPG~~--TptEi~~A~-~~G~~~vK~F 128 (196)
T PF01081_consen 63 GAGTVLT-------AEQAEAAIAAGAQFIVSPGFD----PEVIEYAREYGIPYIPGVM--TPTEIMQAL-EAGADIVKLF 128 (196)
T ss_dssp EEES--S-------HHHHHHHHHHT-SEEEESS------HHHHHHHHHHTSEEEEEES--SHHHHHHHH-HTT-SEEEET
T ss_pred EEEeccC-------HHHHHHHHHcCCCEEECCCCC----HHHHHHHHHcCCcccCCcC--CHHHHHHHH-HCCCCEEEEe
Confidence 5544333 456888999999999999764 3477888999999988764 554554333 3222333221
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.. +.-| -..+++.++.-. +++++.-+||+ ++|+.+.+++|+.++.+||.+++.
T Consensus 129 PA-~~~G--------G~~~ik~l~~p~p~~~~~ptGGV~-~~N~~~~l~ag~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 129 PA-GALG--------GPSYIKALRGPFPDLPFMPTGGVN-PDNLAEYLKAGAVAVGGGSWLFPK 182 (196)
T ss_dssp TT-TTTT--------HHHHHHHHHTTTTT-EEEEBSS---TTTHHHHHTSTTBSEEEESGGGSH
T ss_pred cc-hhcC--------cHHHHHHHhccCCCCeEEEcCCCC-HHHHHHHHhCCCEEEEECchhcCH
Confidence 10 0111 136899999865 79999999997 699999999999999999999985
No 123
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.76 E-value=1.5e-06 Score=78.28 Aligned_cols=188 Identities=18% Similarity=0.204 Sum_probs=126.7
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEE
Q 021527 65 LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIA 143 (311)
Q Consensus 65 li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPii 143 (311)
+++-+- ..+.++..+.+++|.++|+..||+- ++.| +.++.+++++++. ++-|.
T Consensus 6 vv~Vir--~~~~~~a~~ia~al~~gGi~~iEit--~~tp----------------------~a~~~I~~l~~~~~~~~vG 59 (201)
T PRK06015 6 VIPVLL--IDDVEHAVPLARALAAGGLPAIEIT--LRTP----------------------AALDAIRAVAAEVEEAIVG 59 (201)
T ss_pred EEEEEE--cCCHHHHHHHHHHHHHCCCCEEEEe--CCCc----------------------cHHHHHHHHHHHCCCCEEe
Confidence 444443 2356899999999999999999994 4444 2356777777654 34455
Q ss_pred EEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe
Q 021527 144 LFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS 223 (311)
Q Consensus 144 lm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs 223 (311)
.-+-.| .+-++.+.++|++=++-|.+.. ++.+.|+++|+..++-+ .||.|-+..+ +..-.++=+-.
T Consensus 60 AGTVl~-------~e~a~~ai~aGA~FivSP~~~~----~vi~~a~~~~i~~iPG~--~TptEi~~A~-~~Ga~~vK~FP 125 (201)
T PRK06015 60 AGTILN-------AKQFEDAAKAGSRFIVSPGTTQ----ELLAAANDSDVPLLPGA--ATPSEVMALR-EEGYTVLKFFP 125 (201)
T ss_pred eEeCcC-------HHHHHHHHHcCCCEEECCCCCH----HHHHHHHHcCCCEeCCC--CCHHHHHHHH-HCCCCEEEECC
Confidence 544333 4567889999999998887753 36677899999888765 3555654433 32222332211
Q ss_pred cCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch--hhhcCCchhHHHHHH
Q 021527 224 SIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL--LGEAQSPEEGLKELE 300 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~--~~~~~~~~~~~~~~~ 300 (311)
. +.-|. ..+++.+|.-. ++|++.-+||+ ++|+.+.+++|+..++.||.+++. +. +...++++
T Consensus 126 a-~~~GG--------~~yikal~~plp~~~l~ptGGV~-~~n~~~~l~ag~~~~~ggs~l~~~~~~~-----~~~~~~i~ 190 (201)
T PRK06015 126 A-EQAGG--------AAFLKALSSPLAGTFFCPTGGIS-LKNARDYLSLPNVVCVGGSWVAPKELVA-----AGDWAGIT 190 (201)
T ss_pred c-hhhCC--------HHHHHHHHhhCCCCcEEecCCCC-HHHHHHHHhCCCeEEEEchhhCCchhhh-----cccHHHHH
Confidence 0 01110 26899998865 79999999997 799999999999999999999863 22 22345666
Q ss_pred HHHHHHH
Q 021527 301 KFAKSLK 307 (311)
Q Consensus 301 ~~~~~l~ 307 (311)
+.++++.
T Consensus 191 ~~a~~~~ 197 (201)
T PRK06015 191 KLAAEAA 197 (201)
T ss_pred HHHHHHH
Confidence 6666554
No 124
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=98.76 E-value=2.3e-07 Score=89.26 Aligned_cols=187 Identities=16% Similarity=0.266 Sum_probs=117.7
Q ss_pred CccEEEEEeCCCCChh------hHHHHHHHHHHCCCCEEEEcCCCCCCC-CChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 62 KVALIPYITAGDPDLS------TTAEALKLLDSCGSDIIELGVPYSDPL-ADGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~------~~~e~~~~L~~~GaD~IElG~PfsDP~-aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
+..+|.=+=--.|+.. .-.++++.++++||++|-+= .||. -.| + ++.++++
T Consensus 118 ~~~vIAEvKrASPSkG~I~~~~dp~~iA~~Ye~~GA~aISVL---Td~~~F~G---------------s----~e~L~~v 175 (338)
T PLN02460 118 QPGLIAEVKKASPSRGVLRENFDPVEIAQAYEKGGAACLSVL---TDEKYFQG---------------S----FENLEAI 175 (338)
T ss_pred CcceEeeeccCCCCCCccCCCCCHHHHHHHHHhCCCcEEEEe---cCcCcCCC---------------C----HHHHHHH
Confidence 3567766633334321 45799999999999999983 3332 223 1 4678888
Q ss_pred hcc-CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHH
Q 021527 135 VPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAI 211 (311)
Q Consensus 135 r~~-~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i 211 (311)
|+. +++||+.-=+ ... .-=+..+...|||.|++. =|+.++..+|.+.++..|++.+.=+ ++ .+.++..
T Consensus 176 r~~~v~lPvLrKDF----IID--~yQI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEV--H~-~~ElerA 246 (338)
T PLN02460 176 RNAGVKCPLLCKEF----IVD--AWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEV--HD-EREMDRV 246 (338)
T ss_pred HHcCCCCCEeeccc----cCC--HHHHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEe--CC-HHHHHHH
Confidence 987 8999877321 111 112456788999998774 3555678899999999999876544 33 3334333
Q ss_pred HHhCCceEEEEecCCccCCC-CCCCchHHHHHHHHhh-----c---CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 212 VEASEGFVYLVSSIGVTGAR-ASISGHVQTLLREIKE-----S---STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 212 ~~~a~gfiY~vs~~G~TG~~-~~~~~~~~~~l~~vk~-----~---~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.+. .|.-.+ |+..-. ..+..++ +...++.. . .++-++...||+|++|+..+.++|+|||.||++|
T Consensus 247 l~~-~ga~iI----GINNRdL~Tf~vDl-~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsL 320 (338)
T PLN02460 247 LGI-EGVELI----GINNRSLETFEVDI-SNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESL 320 (338)
T ss_pred Hhc-CCCCEE----EEeCCCCCcceECH-HHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHH
Confidence 332 133211 222210 1122222 22333333 1 1344667899999999999999999999999999
Q ss_pred hch
Q 021527 283 VKL 285 (311)
Q Consensus 283 v~~ 285 (311)
++.
T Consensus 321 Mr~ 323 (338)
T PLN02460 321 VKQ 323 (338)
T ss_pred hCC
Confidence 993
No 125
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.76 E-value=3.9e-07 Score=87.62 Aligned_cols=160 Identities=17% Similarity=0.218 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC-----CcEEEEecCcch
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS-----CPIALFTYYNPI 151 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~-----iPiilm~Y~n~i 151 (311)
+++.+.++.+.+ ++|+||+.+ |-|..+|- ..+.+.+.+.++++.+|+.++ +||.+-.-.|.
T Consensus 148 ~d~~~~~~~~~~-~ad~ielN~--scP~~~g~----------~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~- 213 (327)
T cd04738 148 EDYVIGVRKLGP-YADYLVVNV--SSPNTPGL----------RDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDL- 213 (327)
T ss_pred HHHHHHHHHHHh-hCCEEEEEC--CCCCCCcc----------ccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCC-
Confidence 455555566544 499999974 66655441 113455666778888887765 89988653221
Q ss_pred hccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCC
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGAR 231 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~ 231 (311)
....+.++++.+.++|+|||.+..-..+ ... ...| . . . .+ .-|.+|.
T Consensus 214 ~~~~~~~ia~~l~~aGad~I~~~n~~~~-------------~~~--~~~~-----~---~-~--~~------~gG~sG~- 260 (327)
T cd04738 214 SDEELEDIADVALEHGVDGIIATNTTIS-------------RPG--LLRS-----P---L-A--NE------TGGLSGA- 260 (327)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECCccc-------------ccc--cccc-----c---c-c--CC------CCccCCh-
Confidence 0012355667777888888766421100 000 0000 0 0 0 00 0022221
Q ss_pred CCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 232 ASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 232 ~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
...+...+.++++|+.+ ++||+.-+||.|++|+.+++..|||.|-|||+++.
T Consensus 261 -~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~ 314 (327)
T cd04738 261 -PLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY 314 (327)
T ss_pred -hhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh
Confidence 12223457899999988 79999999999999999999999999999999975
No 126
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.75 E-value=1.8e-06 Score=75.31 Aligned_cols=173 Identities=16% Similarity=0.162 Sum_probs=105.4
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchh--
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPIL-- 152 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~-- 152 (311)
|.+...+.++.+.++|+|.|++. |.+ ++.+.+.....++|+++-...+...
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~---------g~~------------------i~~~~~~~~~~~~~v~~~v~~~~~~~~ 63 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVN---------PGY------------------VRLAADALAGSDVPVIVVVGFPTGLTT 63 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEC---------HHH------------------HHHHHHHhCCCCCeEEEEecCCCCCCc
Confidence 78899999999999999999997 311 2222221111158877765444311
Q ss_pred ccCHHHHHHHHHHcCCcEEEec-CC--C----hhhHHHHHHHHHH---cCCCeEEEeCCCC--hHHHHHHHHH--hCCce
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVP-DV--P----LEETESLQKEAMK---NKIELVLFTTPTT--PTDRMKAIVE--ASEGF 218 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviip-Dl--p----~ee~~~~~~~~~~---~gi~~I~lisp~t--~~eri~~i~~--~a~gf 218 (311)
.....+.++.+.+.|+|++.+. .. + .++..++...+.+ .++.++....|.. +.+.+.+..+ ...|+
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~ 143 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGA 143 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 1123456778999999999874 21 1 2344444444433 4887776665532 2333333322 13466
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
+++-...|.+. ... + .+.++++++.. +.|+.+.+|+++++++...+..||||+++|
T Consensus 144 ~~iK~~~~~~~--~~~--~-~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 144 DFIKTSTGFGG--GGA--T-VEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CEEEeCCCCCC--CCC--C-HHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 55532222111 011 1 24566676665 579999999999999999999999999986
No 127
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=98.73 E-value=7e-07 Score=82.58 Aligned_cols=168 Identities=20% Similarity=0.311 Sum_probs=104.5
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc-chhccCH--
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN-PILKRGV-- 156 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n-~i~~~g~-- 156 (311)
.+.+...+++|||-|||+ ++ +..| |.|.. +..++.+++.+++|+.+|.--. .-|.|.-
T Consensus 11 ~~~a~~A~~~GAdRiELc---~~-L~~G-------------GlTPS--~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E 71 (248)
T PRK11572 11 MECALTAQQAGADRIELC---AA-PKEG-------------GLTPS--LGVLKSVRERVTIPVHPIIRPRGGDFCYSDGE 71 (248)
T ss_pred HHHHHHHHHcCCCEEEEc---cC-cCCC-------------CcCCC--HHHHHHHHHhcCCCeEEEEecCCCCCCCCHHH
Confidence 577888899999999997 33 2333 45443 3567777778899999994111 0122222
Q ss_pred ----HHHHHHHHHcCCcEEEec----C--CChhhHHHHHHHHHHcCCCeEEEe----CCCChHHHHHHHHHhCCceEEEE
Q 021527 157 ----DNFMSTVRDIGIRGLVVP----D--VPLEETESLQKEAMKNKIELVLFT----TPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 157 ----~~fi~~~~~aGadGviip----D--lp~ee~~~~~~~~~~~gi~~I~li----sp~t~~eri~~i~~~a~gfiY~v 222 (311)
.+.++.+++.|+|||++. | +..+...++.+.+ .+++..+-- .+ .+.+-++.+.+ -||.-+.
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a--~~~~vTFHRAfD~~~-d~~~al~~l~~--lG~~rIL 146 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAA--GPLAVTFHRAFDMCA-NPLNALKQLAD--LGVARIL 146 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHh--cCCceEEechhhccC-CHHHHHHHHHH--cCCCEEE
Confidence 345677899999999995 2 2223356666665 356655532 22 22344555555 3776665
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEE
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvI 277 (311)
+ +|...... +-.+.|+++.+.. +.-|++|+||+ ++|+.++.+.|+.-+=
T Consensus 147 T----SGg~~~a~-~g~~~L~~lv~~a~~~~Im~GgGV~-~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 147 T----SGQQQDAE-QGLSLIMELIAASDGPIIMAGAGVR-LSNLHKFLDAGVREVH 196 (248)
T ss_pred C----CCCCCCHH-HHHHHHHHHHHhcCCCEEEeCCCCC-HHHHHHHHHcCCCEEe
Confidence 4 34433322 2335566655543 33399999997 7999999888887653
No 128
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=98.72 E-value=6.1e-07 Score=82.40 Aligned_cols=172 Identities=19% Similarity=0.149 Sum_probs=116.3
Q ss_pred ChhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHH
Q 021527 46 PTVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFN 125 (311)
Q Consensus 46 ~m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~ 125 (311)
+.+||++.+.++++.. .+ -+..|+-+.+.+.+.++.+.+ ++|+|||..=..-|-.- ..-+-.+ -..+.+
T Consensus 53 ~~~~i~~e~~~~~~~~--~v--ivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~----~~g~G~~--Ll~dp~ 121 (231)
T TIGR00736 53 FNSYIIEQIKKAESRA--LV--SVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEIT----EIGIGQE--LLKNKE 121 (231)
T ss_pred HHHHHHHHHHHHhhcC--CE--EEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHc----CCCCchh--hcCCHH
Confidence 5679999888885322 23 345567777899999999876 79999996444333111 0000001 123566
Q ss_pred HHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 126 AILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 126 ~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
.+.++++.++ +.++||.+-.-.+.. .-...++.+.+.++|+|++.+..
T Consensus 122 ~l~~iv~av~-~~~~PVsvKiR~~~~-~~~~~~~a~~l~~aGad~i~Vd~------------------------------ 169 (231)
T TIGR00736 122 LLKEFLTKMK-ELNKPIFVKIRGNCI-PLDELIDALNLVDDGFDGIHVDA------------------------------ 169 (231)
T ss_pred HHHHHHHHHH-cCCCcEEEEeCCCCC-cchHHHHHHHHHHcCCCEEEEee------------------------------
Confidence 7778888888 458998887543311 01234678888889999985510
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+..|. +....+.|+++++.+ ++||+..+||.|.|++.++++.|||||-||+++.+
T Consensus 170 --------------------~~~g~----~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 170 --------------------MYPGK----PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred --------------------CCCCC----chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 00010 001247899999987 49999999999999999999999999999998875
No 129
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=98.72 E-value=4.4e-07 Score=87.51 Aligned_cols=168 Identities=20% Similarity=0.242 Sum_probs=101.8
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcC--CCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGV--PYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~--PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~ 139 (311)
...+++=|...+| +.+.+.++.+.++|+|+|||.. |...=.-|| +--+|. .+.+-+.++++.+++.++
T Consensus 64 e~p~~vQl~g~~p--~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~------~Gs~L~--~~p~~~~eiv~avr~~v~ 133 (333)
T PRK11815 64 EHPVALQLGGSDP--ADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGR------FGACLM--AEPELVADCVKAMKDAVS 133 (333)
T ss_pred CCcEEEEEeCCCH--HHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCC------eeeHHh--cCHHHHHHHHHHHHHHcC
Confidence 4567777766666 7888999999999999999953 332111121 000110 255667789999998888
Q ss_pred CcEEEEe---cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 140 CPIALFT---YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 140 iPiilm~---Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
+||.+-. +.+........+|++.+.++|+|.+++. ..+.. . .
T Consensus 134 ~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh--------------------------~Rt~~-----~----~ 178 (333)
T PRK11815 134 IPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVH--------------------------ARKAW-----L----K 178 (333)
T ss_pred CceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEc--------------------------CCchh-----h----c
Confidence 9988742 1110000011234444444455544433 11110 0 0
Q ss_pred ceEEEEecCCccCCCC-CCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGARA-SISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~-~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|.+|... ..++...+.++++++.+ ++||+..+||++++++.++++ |||||.||.++..
T Consensus 179 ---------g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~ 238 (333)
T PRK11815 179 ---------GLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYH 238 (333)
T ss_pred ---------CCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHh
Confidence 1111110 12222346788998875 899999999999999999997 5999999988764
No 130
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.72 E-value=2.7e-06 Score=77.63 Aligned_cols=171 Identities=22% Similarity=0.272 Sum_probs=102.1
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc-
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN- 149 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n- 149 (311)
++..++..+.++.+.++|+|.+-+- |. +++..++. .+.|+++.....
T Consensus 17 ~~~~~d~~~~~~~~~~~g~~av~v~-~~-----------------------------~~~~~~~~~~~~~~~i~~~~~~~ 66 (235)
T cd00958 17 NPGLEDPEETVKLAAEGGADAVALT-KG-----------------------------IARAYGREYAGDIPLIVKLNGST 66 (235)
T ss_pred CccccCHHHHHHHHHhcCCCEEEeC-hH-----------------------------HHHhcccccCCCCcEEEEECCCC
Confidence 3455677899999999999999884 11 12221111 133433221100
Q ss_pred chh--ccCHHH---HHHHHHHcCCcEEEec----CCCh----hhHHHHHHHHHHcCCCeEEEeCC--------CChHHHH
Q 021527 150 PIL--KRGVDN---FMSTVRDIGIRGLVVP----DVPL----EETESLQKEAMKNKIELVLFTTP--------TTPTDRM 208 (311)
Q Consensus 150 ~i~--~~g~~~---fi~~~~~aGadGviip----Dlp~----ee~~~~~~~~~~~gi~~I~lisp--------~t~~eri 208 (311)
.+. ....+. .++.+.+.|++++.+. +++. ++..++++.++++|++++.-... .++ +.+
T Consensus 67 ~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~-~~i 145 (235)
T cd00958 67 SLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDP-DLI 145 (235)
T ss_pred CCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCH-HHH
Confidence 000 112233 3678899999988442 2322 24667888889999997764332 122 222
Q ss_pred HHHH--HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCC--CCHH----HHHHHHHcCCcEEEEhh
Q 021527 209 KAIV--EASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGI--SKPE----HVQQVAGWGADGVIVGS 280 (311)
Q Consensus 209 ~~i~--~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGI--st~e----~v~~v~~~GADGvIVGS 280 (311)
...+ ....|..|+-.. .|+ + .+.++++.+.+++||++-+|+ .|++ +++++.+.||+|+.+|+
T Consensus 146 ~~~~~~a~~~GaD~Ik~~--~~~-------~-~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~ 215 (235)
T cd00958 146 AYAARIGAELGADIVKTK--YTG-------D-AESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGR 215 (235)
T ss_pred HHHHHHHHHHCCCEEEec--CCC-------C-HHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEech
Confidence 2211 112466666432 222 1 356888888888998885565 5664 49999999999999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
++.+
T Consensus 216 ~i~~ 219 (235)
T cd00958 216 NIFQ 219 (235)
T ss_pred hhhc
Confidence 9996
No 131
>PLN02535 glycolate oxidase
Probab=98.72 E-value=2.3e-06 Score=83.45 Aligned_cols=171 Identities=17% Similarity=0.230 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCC------------CCCCCChHHHHHH-
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPY------------SDPLADGPVIQAA- 113 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~Pf------------sDP~aDGp~Iq~a- 113 (311)
.+++.-+. ..+...|-.|+ ..|.+.+.+.++..+++|+..|-+ +.|. +-|. -+.+...
T Consensus 114 slEeva~~--~~~~~wfQlY~---~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~--~~~~~~~~ 186 (364)
T PLN02535 114 TVEEVASS--CNAVRFLQLYV---YKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQ--LKNFEGLL 186 (364)
T ss_pred CHHHHHhc--CCCCeEEEEec---cCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcc--hhhHhhhh
Confidence 34554332 23456777888 677889999999999999999888 2222 2221 0011100
Q ss_pred -----------HH----HHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCCh
Q 021527 114 -----------AT----RSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL 178 (311)
Q Consensus 114 -----------~~----~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ 178 (311)
.. .-+....++ +.++.+|+.+++||++-+-.+ .+..+.+.++|+|+|++..-.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~tW----~~i~~lr~~~~~PvivKgV~~-------~~dA~~a~~~GvD~I~vsn~G- 254 (364)
T PLN02535 187 STEVVSDKGSGLEAFASETFDASLSW----KDIEWLRSITNLPILIKGVLT-------REDAIKAVEVGVAGIIVSNHG- 254 (364)
T ss_pred ccCCCccccccHHHHHHhccCCCCCH----HHHHHHHhccCCCEEEecCCC-------HHHHHHHHhcCCCEEEEeCCC-
Confidence 00 000112333 567778888889988875432 345777888888888775321
Q ss_pred hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEe
Q 021527 179 EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVG 256 (311)
Q Consensus 179 ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vG 256 (311)
| |. .+ ..+...+.+.++++.. ++||++.
T Consensus 255 -------------G--------------r~----------------~d-------~~~~t~~~L~ev~~av~~~ipVi~d 284 (364)
T PLN02535 255 -------------A--------------RQ----------------LD-------YSPATISVLEEVVQAVGGRVPVLLD 284 (364)
T ss_pred -------------c--------------CC----------------CC-------CChHHHHHHHHHHHHHhcCCCEEee
Confidence 0 00 00 0011234566665543 6999999
Q ss_pred eCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 257 FGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 257 fGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
+||++..|+.+.+..|||+|.||+++...+..
T Consensus 285 GGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~ 316 (364)
T PLN02535 285 GGVRRGTDVFKALALGAQAVLVGRPVIYGLAA 316 (364)
T ss_pred CCCCCHHHHHHHHHcCCCEEEECHHHHhhhhh
Confidence 99999999999999999999999999997753
No 132
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.70 E-value=1.6e-05 Score=75.13 Aligned_cols=209 Identities=18% Similarity=0.204 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++. +-++..|= ..|++...-++++.++.+..+|---.|-...+. ..+.+.
T Consensus 5 ~~~~~l~~A~~~-~yaV~Afn---~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~-----------------~~~~~~ 63 (281)
T PRK06806 5 QMKELLKKANQE-NYGVGAFS---VANMEMVMGAIKAAEELNSPIILQIAEVRLNHS-----------------PLHLIG 63 (281)
T ss_pred cHHHHHHHHHHC-CceEEEEE---eCCHHHHHHHHHHHHHhCCCEEEEcCcchhccC-----------------ChHHHH
Confidence 356777766554 34555555 347888889999999999888765433322222 222333
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCe----EEE
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIEL----VLF 198 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~----I~l 198 (311)
.+++...++.++||.+-. + +....++++.+.+.|++.|-+ .++|.+| ..++++.|+++|+.+ .-+
T Consensus 64 ~~~~~~a~~~~vpv~lHl--D---H~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghl 138 (281)
T PRK06806 64 PLMVAAAKQAKVPVAVHF--D---HGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRV 138 (281)
T ss_pred HHHHHHHHHCCCCEEEEC--C---CCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeE
Confidence 456666667899998853 2 222346888999999999988 4677765 667889999998742 111
Q ss_pred -----------eCCCChHHHHHHHHHhCCceEEEEecCC-ccCCCCCCCchHHHHHHHHhhcCCCcEEEee--CCCCHHH
Q 021527 199 -----------TTPTTPTDRMKAIVEASEGFVYLVSSIG-VTGARASISGHVQTLLREIKESSTKPVAVGF--GISKPEH 264 (311)
Q Consensus 199 -----------isp~t~~eri~~i~~~a~gfiY~vs~~G-~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGf--GIst~e~ 264 (311)
.+-+++ +..++..+ ..|..|+.-..| +.|.....+.--.+.++++++.+++|++.=+ ||+ +|+
T Consensus 139 G~~d~~~~~~g~s~t~~-eea~~f~~-~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~-~e~ 215 (281)
T PRK06806 139 GGSEDGSEDIEMLLTST-TEAKRFAE-ETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGIS-PED 215 (281)
T ss_pred CCccCCcccccceeCCH-HHHHHHHH-hhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCC-HHH
Confidence 112343 44444433 356677743223 3443322233234779999998999987755 885 899
Q ss_pred HHHHHHcCCcEEEEhhHhhchh
Q 021527 265 VQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 265 v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+.++.+.|++++-|+|++....
T Consensus 216 ~~~~i~~G~~kinv~T~i~~a~ 237 (281)
T PRK06806 216 FKKCIQHGIRKINVATATFNSV 237 (281)
T ss_pred HHHHHHcCCcEEEEhHHHHHHH
Confidence 9999999999999999998744
No 133
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=98.68 E-value=3.5e-06 Score=88.27 Aligned_cols=189 Identities=15% Similarity=0.183 Sum_probs=123.2
Q ss_pred cCCccEEEEEeCCCCCh------hhHHHHHHHHHHCCCCEEEEcCCCCCCCC-ChHHHHHHHHHHHHcCCCHHHHHHHHH
Q 021527 60 QGKVALIPYITAGDPDL------STTAEALKLLDSCGSDIIELGVPYSDPLA-DGPVIQAAATRSLARGTNFNAILSMLK 132 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~------~~~~e~~~~L~~~GaD~IElG~PfsDP~a-DGp~Iq~a~~~Al~~G~~~~~~~~~i~ 132 (311)
.++..+|.=+=.-.|.. ..-.++++.++++||+.|-+= .||-. .| + ++.++
T Consensus 47 ~~~~~vIaEiKraSPs~G~i~~~~d~~~~a~~y~~~GA~aiSVl---Te~~~F~G---------------s----~~~l~ 104 (695)
T PRK13802 47 ADGIPVIAEIKRASPSKGHLSDIPDPAALAREYEQGGASAISVL---TEGRRFLG---------------S----LDDFD 104 (695)
T ss_pred CCCCeEEEEeecCCCCCCcCCCCCCHHHHHHHHHHcCCcEEEEe---cCcCcCCC---------------C----HHHHH
Confidence 33456777774445543 256888999999999999994 44322 23 2 35778
Q ss_pred HhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec-C-CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHH
Q 021527 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP-D-VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKA 210 (311)
Q Consensus 133 ~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip-D-lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~ 210 (311)
++|+.+++||+--= +..- +.-+..+...|+|.|++. . |+.++..++.+.++..|++.+.=+ .+. +.++.
T Consensus 105 ~vr~~v~~PvLrKD----FIid--~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEv--h~~-~el~~ 175 (695)
T PRK13802 105 KVRAAVHIPVLRKD----FIVT--DYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVET--HTR-EEIER 175 (695)
T ss_pred HHHHhCCCCEEecc----ccCC--HHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEe--CCH-HHHHH
Confidence 88888999977632 1110 224567888999998874 3 445678999999999999977644 333 33443
Q ss_pred HHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 211 IVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 211 i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
..+....+| -+-.... ..+..++ +...++.... +..++...||++++|+..+.+.|+|||.||++|++.
T Consensus 176 a~~~ga~ii-GINnRdL----~tf~vd~-~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~ 246 (695)
T PRK13802 176 AIAAGAKVI-GINARNL----KDLKVDV-NKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATA 246 (695)
T ss_pred HHhCCCCEE-EEeCCCC----ccceeCH-HHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCC
Confidence 333333332 2211100 0111222 3344444443 466778899999999999999999999999999994
No 134
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=98.66 E-value=4e-07 Score=87.91 Aligned_cols=161 Identities=17% Similarity=0.260 Sum_probs=101.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC-------CcEEEEecC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS-------CPIALFTYY 148 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~-------iPiilm~Y~ 148 (311)
.+++.+.++.+.+ .+|+|||.+ |-|-.-| +..+.+.+.+.++++.+++.++ +||++-...
T Consensus 153 ~~dy~~~~~~~~~-~ad~iElNl--ScPn~~~----------~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP 219 (335)
T TIGR01036 153 KEDYAACLRKLGP-LADYLVVNV--SSPNTPG----------LRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAP 219 (335)
T ss_pred HHHHHHHHHHHhh-hCCEEEEEc--cCCCCCC----------cccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCC
Confidence 4566666666655 499999975 4443222 1122334445556666665444 999997654
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCcc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~T 228 (311)
|.-. -.+..+++.+.++|+||+++-+--.+ .+. +..|.. ..+ .-|.+
T Consensus 220 ~~~~-~~i~~ia~~~~~~GadGi~l~NT~~~-------------~~~--~~~~~~-----------~~~------~GGlS 266 (335)
T TIGR01036 220 DLTE-SDLEDIADSLVELGIDGVIATNTTVS-------------RSL--VQGPKN-----------SDE------TGGLS 266 (335)
T ss_pred CCCH-HHHHHHHHHHHHhCCcEEEEECCCCc-------------ccc--ccCccc-----------cCC------CCccc
Confidence 4110 02466788888999999987643211 011 001110 001 11345
Q ss_pred CCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 229 GARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|. .+.+-..++++++++.+ ++||+.-+||.|+||+.+.+.+|||.|.|||+++.
T Consensus 267 G~--~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 267 GK--PLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred CH--HHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 53 23344567888888876 68999999999999999999999999999999986
No 135
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.66 E-value=6.3e-06 Score=80.32 Aligned_cols=68 Identities=25% Similarity=0.371 Sum_probs=51.5
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhH-HHHHHHHHHHHHh
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEG-LKELEKFAKSLKS 308 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~-~~~~~~~~~~l~~ 308 (311)
.+.+.++++.+++||++.+||++..|+.+.+..|||+|.||+.+...+... .+++ .+.++.+..+|+.
T Consensus 278 ~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~--G~~gv~~~l~~l~~el~~ 346 (361)
T cd04736 278 IEALAEIVAATYKPVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAAR--GEAGVSEVLRLLKEEIDR 346 (361)
T ss_pred HHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence 345667777678999999999999999999999999999999999988532 2333 3344444455554
No 136
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=98.63 E-value=2.6e-06 Score=82.06 Aligned_cols=158 Identities=13% Similarity=0.231 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEecCcc--hhcc-------------------C--HHHHHHHHHHcCCcEEEec-CCCh
Q 021527 123 NFNAILSMLKEVVPQMSCPIALFTYYNP--ILKR-------------------G--VDNFMSTVRDIGIRGLVVP-DVPL 178 (311)
Q Consensus 123 ~~~~~~~~i~~ir~~~~iPiilm~Y~n~--i~~~-------------------g--~~~fi~~~~~aGadGviip-Dlp~ 178 (311)
+.+++-+.++++|+.++.|+.+.....+ .... + .++.++.+.+.+++.+.+. ..|.
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~ 125 (330)
T PF03060_consen 46 TPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPP 125 (330)
T ss_dssp SHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-
T ss_pred ChHHHHHHHHHHHhhccccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccch
Confidence 3455667888888877779877543221 1100 0 0122223333445587775 5554
Q ss_pred hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCC-chHHHHHHHHhhcCCCcEEEee
Q 021527 179 EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASIS-GHVQTLLREIKESSTKPVAVGF 257 (311)
Q Consensus 179 ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~-~~~~~~l~~vk~~~~~Pv~vGf 257 (311)
+ ++.+.++++|+..+..++ +..+ .++..+..-..+.+... --|.+.+.+ .+...++.++++..++||++.+
T Consensus 126 ~---~~i~~l~~~gi~v~~~v~--s~~~-A~~a~~~G~D~iv~qG~--eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAG 197 (330)
T PF03060_consen 126 P---EVIERLHAAGIKVIPQVT--SVRE-ARKAAKAGADAIVAQGP--EAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAG 197 (330)
T ss_dssp H---HHHHHHHHTT-EEEEEES--SHHH-HHHHHHTT-SEEEEE-T--TSSEE---SSG-HHHHHHHHHHH-SS-EEEES
T ss_pred H---HHHHHHHHcCCccccccC--CHHH-HHHhhhcCCCEEEEecc--ccCCCCCccccceeeHHHHHhhhcCCcEEEec
Confidence 3 356778899987776553 4333 33444443333333311 122222211 2477899999999999999999
Q ss_pred CCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 258 GISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 258 GIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
||.+.+++..++..|||||.+||.|+-.-+.
T Consensus 198 GI~dg~~iaaal~lGA~gV~~GTrFl~t~Es 228 (330)
T PF03060_consen 198 GIADGRGIAAALALGADGVQMGTRFLATEES 228 (330)
T ss_dssp S--SHHHHHHHHHCT-SEEEESHHHHTSTTS
T ss_pred CcCCHHHHHHHHHcCCCEeecCCeEEecccc
Confidence 9999999999999999999999999976653
No 137
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=98.63 E-value=4.6e-06 Score=80.51 Aligned_cols=177 Identities=19% Similarity=0.269 Sum_probs=104.7
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCC--CCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 81 EALKLLDSCGSDIIELGVPYSDP--LADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP--~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
+..+..+..++|.+|+++++--. ...| ..+.+.+++.++++++.+++||++-.--+. -..+
T Consensus 132 ~~~~~i~~i~adal~i~ln~~q~~~~p~g-------------~~~f~~~le~i~~i~~~~~vPVivK~~g~g----~~~~ 194 (333)
T TIGR02151 132 EAQEAIDMIEADALAIHLNVLQELVQPEG-------------DRNFKGWLEKIAEICSQLSVPVIVKEVGFG----ISKE 194 (333)
T ss_pred HHHHHHHHhcCCCEEEcCcccccccCCCC-------------CcCHHHHHHHHHHHHHhcCCCEEEEecCCC----CCHH
Confidence 34444444568888888754111 1111 124456778999999999999998632111 1246
Q ss_pred HHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchH
Q 021527 159 FMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHV 238 (311)
Q Consensus 159 fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~ 238 (311)
.++.+.++|+|++.+.--. |-.. ...+..+.. ....+ -|.. ..| . ..
T Consensus 195 ~a~~L~~aGvd~I~Vsg~g--------------Gt~~-------~~ie~~r~~-~~~~~-~~~~-~~g-------~--~t 241 (333)
T TIGR02151 195 VAKLLADAGVSAIDVAGAG--------------GTSW-------AQVENYRAK-GSNLA-SFFN-DWG-------I--PT 241 (333)
T ss_pred HHHHHHHcCCCEEEECCCC--------------CCcc-------cchhhhccc-ccccc-hhhh-ccc-------H--hH
Confidence 7888899999998875321 1000 000111000 00000 0100 001 1 12
Q ss_pred HHHHHHHhh-cCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 239 QTLLREIKE-SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 239 ~~~l~~vk~-~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
.+.+.++++ ..++||++.+||++++++.+++..|||+|-+|+++.+...+. .++.-.+.++.+.++|+.
T Consensus 242 ~~~l~~~~~~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~-g~~~v~~~i~~~~~eL~~ 311 (333)
T TIGR02151 242 AASLLEVRSDAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDE-GEEAVIEEIELIIEELKV 311 (333)
T ss_pred HHHHHHHHhcCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhc-CHHHHHHHHHHHHHHHHH
Confidence 345666666 467999999999999999999999999999999999876422 223334455566666654
No 138
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.63 E-value=5.1e-06 Score=80.79 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=105.9
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCC--------------CCCCC----CCh--------HHHHHHH
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVP--------------YSDPL----ADG--------PVIQAAA 114 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~P--------------fsDP~----aDG--------p~Iq~a~ 114 (311)
+...|..|+ ..|.+.+.+.++..+++|+..|-+.+- |.-|. .+. +.. ...
T Consensus 125 ~~~wfQlY~---~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~-~~~ 200 (351)
T cd04737 125 GPKWFQLYM---SKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGI-SEI 200 (351)
T ss_pred CCeEEEEee---cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcch-hhh
Confidence 356677787 667788999999999999999998541 22221 000 000 000
Q ss_pred HHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCC
Q 021527 115 TRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIE 194 (311)
Q Consensus 115 ~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~ 194 (311)
...+....++ +.++++|+.+++||++-+-. ..++.+.+.+.|+|++++.+-. | .
T Consensus 201 ~~~~~~~~~~----~~l~~lr~~~~~PvivKgv~-------~~~dA~~a~~~G~d~I~vsnhG--------------G-r 254 (351)
T cd04737 201 YAAAKQKLSP----ADIEFIAKISGLPVIVKGIQ-------SPEDADVAINAGADGIWVSNHG--------------G-R 254 (351)
T ss_pred hhhccCCCCH----HHHHHHHHHhCCcEEEecCC-------CHHHHHHHHHcCCCEEEEeCCC--------------C-c
Confidence 0111122333 46778888888999997521 2467888889999998886421 1 0
Q ss_pred eEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcC
Q 021527 195 LVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWG 272 (311)
Q Consensus 195 ~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~G 272 (311)
.+ + + . +. ..+.+.++++.. ++||++.+||.+..|+.+.+..|
T Consensus 255 ~l-----------------------d-----~---~----~~-~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalG 298 (351)
T cd04737 255 QL-----------------------D-----G---G----PA-SFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASG 298 (351)
T ss_pred cC-----------------------C-----C---C----ch-HHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcC
Confidence 00 0 0 0 11 123455555544 59999999999999999999999
Q ss_pred CcEEEEhhHhhchhh
Q 021527 273 ADGVIVGSAMVKLLG 287 (311)
Q Consensus 273 ADGvIVGSaiv~~~~ 287 (311)
||+|-||+++...+.
T Consensus 299 A~~V~iGr~~l~~la 313 (351)
T cd04737 299 ADAVAVGRPVLYGLA 313 (351)
T ss_pred CCEEEECHHHHHHHh
Confidence 999999999999874
No 139
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=98.62 E-value=3.1e-05 Score=73.17 Aligned_cols=209 Identities=21% Similarity=0.278 Sum_probs=136.6
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+.++..++. +.++..|= -.+++...-++++.++.+..+|---.|-.--+..| .+.+..
T Consensus 4 ~~~~l~~A~~~-~yav~Afn---~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~----------------~~~~~~ 63 (282)
T TIGR01859 4 GKEILQKAKKE-GYAVGAFN---FNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGG----------------YKMAVA 63 (282)
T ss_pred HHHHHHHHHHC-CceEEEEE---ECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCc----------------HHHHHH
Confidence 35666665554 34555555 34788899999999999999887642221111111 234566
Q ss_pred HHHHhhccCC-CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE-----
Q 021527 130 MLKEVVPQMS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL----- 197 (311)
Q Consensus 130 ~i~~ir~~~~-iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~----- 197 (311)
+++.+.++.+ +|+.+-. + +....+.++.+.+.|++.|.+ -++|.+| ..++++.|+++|+.+-.
T Consensus 64 ~~~~~a~~~~~vpv~lhl--D---H~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~ 138 (282)
T TIGR01859 64 MVKTLIERMSIVPVALHL--D---HGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTL 138 (282)
T ss_pred HHHHHHHHCCCCeEEEEC--C---CCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCC
Confidence 7888888888 9999853 1 222346888999999999888 4788776 56788888999875331
Q ss_pred --------E--eCCCChHHHHHHHHHhCCceEEEEecCCc-cCCCCCCCchHHHHHHHHhhcCCCcEEEee--CCCCHHH
Q 021527 198 --------F--TTPTTPTDRMKAIVEASEGFVYLVSSIGV-TGARASISGHVQTLLREIKESSTKPVAVGF--GISKPEH 264 (311)
Q Consensus 198 --------l--isp~t~~eri~~i~~~a~gfiY~vs~~G~-TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGf--GIst~e~ 264 (311)
. .+-+++ +..++..+ ..|..|+.-..|+ .|.-...+.--.+.|+++++.+++|++.=+ ||+ .++
T Consensus 139 gg~ed~~~g~~~~~t~~-eea~~f~~-~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~-~e~ 215 (282)
T TIGR01859 139 GGIEDGVDEKEAELADP-DEAEQFVK-ETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIP-EEQ 215 (282)
T ss_pred cCccccccccccccCCH-HHHHHHHH-HHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCC-HHH
Confidence 0 122344 44444433 2366677433332 222222222224678999998899986644 886 799
Q ss_pred HHHHHHcCCcEEEEhhHhhchh
Q 021527 265 VQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 265 v~~v~~~GADGvIVGSaiv~~~ 286 (311)
++++.+.|++++-|+|.+....
T Consensus 216 i~~~i~~Gi~kiNv~T~l~~a~ 237 (282)
T TIGR01859 216 IKKAIKLGIAKINIDTDCRIAF 237 (282)
T ss_pred HHHHHHcCCCEEEECcHHHHHH
Confidence 9999999999999999987654
No 140
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.60 E-value=7.4e-06 Score=75.68 Aligned_cols=183 Identities=17% Similarity=0.215 Sum_probs=109.6
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
|..||+.+...+ .+..+|++++=+.+==-|- +. ...-+++++.+... + +.++ -|
T Consensus 23 Tgky~s~~~~~~---ai~aSg~evvTvalRR~~~--~~-------------~~~~~~~l~~i~~~----~--~~~L--PN 76 (267)
T CHL00162 23 TGKYKSLKDAIQ---SIEASGCEIVTVAIRRLNN--NL-------------LNDNSNLLNGLDWN----K--LWLL--PN 76 (267)
T ss_pred cCCCCCHHHHHH---HHHHhCCcEEEEEEEEecc--Cc-------------CCCcchHHHhhchh----c--cEEC--Cc
Confidence 667777766555 4556999999885322111 00 00112334444321 2 2232 25
Q ss_pred chhccCHHHHHHH---HHHcC-------CcE---EEecC----CC-hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHH
Q 021527 150 PILKRGVDNFMST---VRDIG-------IRG---LVVPD----VP-LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAI 211 (311)
Q Consensus 150 ~i~~~g~~~fi~~---~~~aG-------adG---viipD----lp-~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i 211 (311)
+--.+..++-++. +.+++ -+= =+++| +| +.|..+-.+.+-+.|+.+.++++++-.. .+++
T Consensus 77 TaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~--a~rL 154 (267)
T CHL00162 77 TAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPML--AKHL 154 (267)
T ss_pred CcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHH--HHHH
Confidence 4444555554443 35554 121 12333 22 1344555566667899998988876432 2223
Q ss_pred HHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 212 VEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 212 ~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+ -|..-++..-..-|+..++.+ ...|+.+++..++||++|-||.+++|+.++.+.|||||-+.|++.+
T Consensus 155 ed--~Gc~aVMPlgsPIGSg~Gl~n--~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIak 223 (267)
T CHL00162 155 ED--IGCATVMPLGSPIGSGQGLQN--LLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQ 223 (267)
T ss_pred HH--cCCeEEeeccCcccCCCCCCC--HHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeec
Confidence 22 355455443334455455543 3578899998899999999999999999999999999999999996
No 141
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=98.60 E-value=1.6e-06 Score=78.00 Aligned_cols=167 Identities=20% Similarity=0.321 Sum_probs=94.3
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc-chhccCH--
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN-PILKRGV-- 156 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n-~i~~~g~-- 156 (311)
.+.+...+++|||-|||. ++.. . .|.|.. +..++.+++..++|+.+|.--. .-|.|..
T Consensus 10 ~~~a~~A~~~GAdRiELc---~~l~-~-------------GGlTPS--~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E 70 (201)
T PF03932_consen 10 LEDALAAEAGGADRIELC---SNLE-V-------------GGLTPS--LGLIRQAREAVDIPVHVMIRPRGGDFVYSDEE 70 (201)
T ss_dssp HHHHHHHHHTT-SEEEEE---BTGG-G-------------T-B-----HHHHHHHHHHTTSEEEEE--SSSS-S---HHH
T ss_pred HHHHHHHHHcCCCEEEEC---CCcc-C-------------CCcCcC--HHHHHHHHhhcCCceEEEECCCCCCccCCHHH
Confidence 567777899999999997 3322 2 244443 4577788878999999994111 0122222
Q ss_pred ----HHHHHHHHHcCCcEEEec----CCCh--hhHHHHHHHHHHcCCCeEEEe----CCCChHHHHHHHHHhCCceEEEE
Q 021527 157 ----DNFMSTVRDIGIRGLVVP----DVPL--EETESLQKEAMKNKIELVLFT----TPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 157 ----~~fi~~~~~aGadGviip----Dlp~--ee~~~~~~~~~~~gi~~I~li----sp~t~~eri~~i~~~a~gfiY~v 222 (311)
.+.++.+++.|+||+++. |-.+ +...++.+.++ |++..+-- .+. +.+-++.+.+. ||..+.
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d-~~~al~~L~~l--G~~rVL 145 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAG--GMPVTFHRAFDEVPD-PEEALEQLIEL--GFDRVL 145 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT--TSEEEE-GGGGGSST-HHHHHHHHHHH--T-SEEE
T ss_pred HHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC--CCeEEEeCcHHHhCC-HHHHHHHHHhc--CCCEEE
Confidence 346677899999999995 3222 23556666654 66666532 222 34556666564 776666
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhc--CCCcEEEeeCCCCHHHHHHHHH-cCCcEE
Q 021527 223 SSIGVTGARASISGHVQTLLREIKES--STKPVAVGFGISKPEHVQQVAG-WGADGV 276 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~--~~~Pv~vGfGIst~e~v~~v~~-~GADGv 276 (311)
|+ |........+ +.|+++.+. ..+-|++|+||+ ++|+..+.+ .|+.-+
T Consensus 146 TS----Gg~~~a~~g~-~~L~~lv~~a~~~i~Im~GgGv~-~~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 146 TS----GGAPTALEGI-ENLKELVEQAKGRIEIMPGGGVR-AENVPELVEETGVREI 196 (201)
T ss_dssp ES----TTSSSTTTCH-HHHHHHHHHHTTSSEEEEESS---TTTHHHHHHHHT-SEE
T ss_pred CC----CCCCCHHHHH-HHHHHHHHHcCCCcEEEecCCCC-HHHHHHHHHhhCCeEE
Confidence 43 3333333332 445554333 357799999997 599999987 665543
No 142
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=98.59 E-value=2.9e-06 Score=79.44 Aligned_cols=179 Identities=12% Similarity=0.161 Sum_probs=114.3
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCC-CCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCcc
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDP-LADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYNP 150 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP-~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n~ 150 (311)
-+.+...++++.|+++|+|.||+|+|-+.+ ...|... ..- .+.++++++. .+.++..|.-.+-
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~-----------~~~---~~~~~~i~~~~~~~~~~~~~~~~~~ 82 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSA-----------FCD---DEFLRRLLGDSKGNTKIAVMVDYGN 82 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCcc-----------CCC---HHHHHHHHhhhccCCEEEEEECCCC
Confidence 345788999999999999999999998654 1112110 111 1244444433 2577888764321
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecC--CChhhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh----CCceEEEE
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPD--VPLEETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA----SEGFVYLV 222 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipD--lp~ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~----a~gfiY~v 222 (311)
...++++.+.++|++.+-+.+ --+++..+..+.++++|+++.+.+ +..++++.+.++++. ...-+|+.
T Consensus 83 ----~~~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~ 158 (266)
T cd07944 83 ----DDIDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV 158 (266)
T ss_pred ----CCHHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 235688889999999977753 224567778889999998765542 233445555444443 23346666
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCC--CcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESST--KPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~--~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
...| . ..|..+.++++.+|+..+ +|+-+ .+|... .+....+++|||.|
T Consensus 159 DT~G---~--~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~-AN~laA~~aGa~~v 212 (266)
T cd07944 159 DSFG---S--MYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLAL-ANTLEAIELGVEII 212 (266)
T ss_pred cCCC---C--CCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHH-HHHHHHHHcCCCEE
Confidence 5444 3 356788999999999875 66644 334433 45556678999865
No 143
>PLN02979 glycolate oxidase
Probab=98.58 E-value=1.2e-05 Score=78.31 Aligned_cols=173 Identities=15% Similarity=0.240 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCC------------CCCCCC-ChHHHHH-
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVP------------YSDPLA-DGPVIQA- 112 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~P------------fsDP~a-DGp~Iq~- 112 (311)
.+++.-+. ..+...|-.|+ +.|.+.+.+.++..+++|+..|-+ +.| |+-|.. .-.....
T Consensus 111 slEeIa~a--~~~~~wfQLY~---~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~ 185 (366)
T PLN02979 111 SVEEVAST--GPGIRFFQLYV---YKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGL 185 (366)
T ss_pred CHHHHHhc--cCCCeEEEEee---cCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhc
Confidence 34554332 24567788888 778889999999999999999988 222 222210 0000000
Q ss_pred -----------HHH----HHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC
Q 021527 113 -----------AAT----RSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP 177 (311)
Q Consensus 113 -----------a~~----~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp 177 (311)
... ..+....++ +.++.+|+.+++||++-+-. ..+..+.+.++|+||+++..-.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~ltW----~dl~wlr~~~~~PvivKgV~-------~~~dA~~a~~~Gvd~I~VsnhG 254 (366)
T PLN02979 186 DLGKMDEANDSGLASYVAGQIDRTLSW----KDVQWLQTITKLPILVKGVL-------TGEDARIAIQAGAAGIIVSNHG 254 (366)
T ss_pred cccCCCcccchhHHHHHhhcCCCCCCH----HHHHHHHhccCCCEEeecCC-------CHHHHHHHHhcCCCEEEECCCC
Confidence 000 001112333 56788888899999997642 2567788999999998776331
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEE
Q 021527 178 LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAV 255 (311)
Q Consensus 178 ~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~v 255 (311)
- + +++ ..+ ...+.+.++++.. ++||++
T Consensus 255 G----------r--qld--------------------------------------~~p-~t~~~L~ei~~~~~~~~~Vi~ 283 (366)
T PLN02979 255 A----------R--QLD--------------------------------------YVP-ATISALEEVVKATQGRIPVFL 283 (366)
T ss_pred c----------C--CCC--------------------------------------Cch-hHHHHHHHHHHHhCCCCeEEE
Confidence 0 0 000 001 1123455554432 489999
Q ss_pred eeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 256 GFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 256 GfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
.+||++..|+.+.+-.|||+|-||..+...+..
T Consensus 284 dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~ 316 (366)
T PLN02979 284 DGGVRRGTDVFKALALGASGIFIGRPVVFSLAA 316 (366)
T ss_pred eCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHh
Confidence 999999999999999999999999999987753
No 144
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=98.58 E-value=5.5e-06 Score=81.30 Aligned_cols=68 Identities=24% Similarity=0.294 Sum_probs=49.4
Q ss_pred HHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 240 TLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 240 ~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
+.+.++++.. ++||++.+||++..|+.+.+..|||+|-+|+.++..+...+ .+.-.+.++.+..+|+.
T Consensus 288 ~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G-~~gv~~~l~~l~~El~~ 357 (381)
T PRK11197 288 RALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAG-QAGVANLLDLIEKEMRV 357 (381)
T ss_pred HHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhcc-HHHHHHHHHHHHHHHHH
Confidence 4455554433 68999999999999999999999999999999999985421 22223344555555554
No 145
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=1.2e-05 Score=72.57 Aligned_cols=171 Identities=20% Similarity=0.243 Sum_probs=117.5
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC-CcE
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS-CPI 142 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~-iPi 142 (311)
.+|+-|..-+| ++.+..+++|.++|++.||+ ||+.|. -++.|++++++.. +=|
T Consensus 14 ~vI~Vlr~~~~--e~a~~~a~Ali~gGi~~IEI--Tl~sp~----------------------a~e~I~~l~~~~p~~lI 67 (211)
T COG0800 14 PVVPVIRGDDV--EEALPLAKALIEGGIPAIEI--TLRTPA----------------------ALEAIRALAKEFPEALI 67 (211)
T ss_pred CeeEEEEeCCH--HHHHHHHHHHHHcCCCeEEE--ecCCCC----------------------HHHHHHHHHHhCcccEE
Confidence 47777765555 89999999999999999999 565552 2357777776543 223
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
.--+-.| .+-++.+.++|++=++-|.+.. ++.+.|.++|+..++-+. |+.|-+..+ +..-..+=+-
T Consensus 68 GAGTVL~-------~~q~~~a~~aGa~fiVsP~~~~----ev~~~a~~~~ip~~PG~~--TptEi~~Al-e~G~~~lK~F 133 (211)
T COG0800 68 GAGTVLN-------PEQARQAIAAGAQFIVSPGLNP----EVAKAANRYGIPYIPGVA--TPTEIMAAL-ELGASALKFF 133 (211)
T ss_pred ccccccC-------HHHHHHHHHcCCCEEECCCCCH----HHHHHHHhCCCcccCCCC--CHHHHHHHH-HcChhheeec
Confidence 3323333 3457789999999998898853 367788999998887653 554655433 3222222222
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 223 SSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+.. +.|. ..+++.++.- .+++++.-+||+ ++|++..+..|+.+|=+||.+++
T Consensus 134 Pa~-~~Gg--------~~~~ka~~gP~~~v~~~pTGGVs-~~N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 134 PAE-VVGG--------PAMLKALAGPFPQVRFCPTGGVS-LDNAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred Ccc-ccCc--------HHHHHHHcCCCCCCeEeecCCCC-HHHHHHHHhCCceEEecCccccC
Confidence 111 2221 2467766664 378999999997 78999999999888888999995
No 146
>PLN02826 dihydroorotate dehydrogenase
Probab=98.56 E-value=1.6e-06 Score=85.92 Aligned_cols=165 Identities=17% Similarity=0.250 Sum_probs=98.1
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc------cCCCcEEEEecCc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP------QMSCPIALFTYYN 149 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~------~~~iPiilm~Y~n 149 (311)
.+++.+.++.+.. .+|+|||.+-. |-.-| .+.+.....+.++++.+++.++ ..++||++-.-.|
T Consensus 203 ~~Dy~~~~~~~~~-~aDylelNiSc--PNtpg-------lr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPd 272 (409)
T PLN02826 203 AADYVQGVRALSQ-YADYLVINVSS--PNTPG-------LRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPD 272 (409)
T ss_pred HHHHHHHHHHHhh-hCCEEEEECCC--CCCCC-------cccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCC
Confidence 4667777777764 49999998544 33222 1222222334455555554443 2468998865222
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccC
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG 229 (311)
.- .-.+.++++.+.+.|+|||++.+-.+.. +. .+... .... ..-|.+|
T Consensus 273 l~-~~di~~ia~~a~~~G~dGIi~~NTt~~r--------------------~~----dl~~~-~~~~------~~GGlSG 320 (409)
T PLN02826 273 LS-KEDLEDIAAVALALGIDGLIISNTTISR--------------------PD----SVLGH-PHAD------EAGGLSG 320 (409)
T ss_pred CC-HHHHHHHHHHHHHcCCCEEEEEcccCcC--------------------cc----chhcc-cccc------cCCCcCC
Confidence 00 0123456666777777777665421110 00 00000 0000 0113444
Q ss_pred CCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 230 ARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. .+.+...+.+.++++.+ ++||+.-+||.|.+|+.+.+.+||+.|-|||+++.
T Consensus 321 ~--pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~ 375 (409)
T PLN02826 321 K--PLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY 375 (409)
T ss_pred c--cccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh
Confidence 3 23344567889998877 68999999999999999999999999999999987
No 147
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=98.56 E-value=4.1e-06 Score=80.21 Aligned_cols=162 Identities=19% Similarity=0.184 Sum_probs=104.1
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHH-HHHHHHcCCCHHHHHHHHHHhhccC--
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA-ATRSLARGTNFNAILSMLKEVVPQM-- 138 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a-~~~Al~~G~~~~~~~~~i~~ir~~~-- 138 (311)
...+++=|...+| +.+.+.++.+.+.|+|.|||..=- | .|.+.+- .-.+|. -+.+.+.++++.+++.+
T Consensus 62 e~p~~vQl~g~~p--~~~~~aA~~~~~~g~d~IdiN~GC--P---~~~v~~~g~Gs~Ll--~~~~~~~eiv~avr~~~~~ 132 (312)
T PRK10550 62 GTLVRIQLLGQYP--QWLAENAARAVELGSWGVDLNCGC--P---SKTVNGSGGGATLL--KDPELIYQGAKAMREAVPA 132 (312)
T ss_pred CCcEEEEeccCCH--HHHHHHHHHHHHcCCCEEEEeCCC--C---chHHhcCCCchHhh--cCHHHHHHHHHHHHHhcCC
Confidence 4568887777777 778889999999999999995322 2 1111110 000111 35566788888888876
Q ss_pred CCcEEEEe--cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 139 SCPIALFT--YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 139 ~iPiilm~--Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
++||.+-. .|+.... ..+|++.+.++|+|.+.++ +.|. .+
T Consensus 133 ~~pVsvKiR~g~~~~~~--~~~~a~~l~~~Gvd~i~Vh--------------------------~Rt~----------~~ 174 (312)
T PRK10550 133 HLPVTVKVRLGWDSGER--KFEIADAVQQAGATELVVH--------------------------GRTK----------ED 174 (312)
T ss_pred CcceEEEEECCCCCchH--HHHHHHHHHhcCCCEEEEC--------------------------CCCC----------cc
Confidence 48988863 1221100 2345555555666665543 1121 01
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHH-HcCCcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVA-GWGADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~-~~GADGvIVGSaiv~ 284 (311)
|.+|.. .+ .+.++++|+.+++||+..+||.|++++.+++ ..|+|||-||-+++.
T Consensus 175 ---------~y~g~~--~~---~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~ 229 (312)
T PRK10550 175 ---------GYRAEH--IN---WQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALN 229 (312)
T ss_pred ---------CCCCCc--cc---HHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHh
Confidence 122210 11 2679999999999999999999999999988 578999999977664
No 148
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=98.55 E-value=1.4e-05 Score=78.62 Aligned_cols=192 Identities=19% Similarity=0.254 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc----------------C-CCCCCC-----CC
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG----------------V-PYSDPL-----AD 106 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG----------------~-PfsDP~-----aD 106 (311)
.+++.-+. ...+...|-.|+ ..|.+.+.+.++..+++|+..|-+- + |+..+. .+
T Consensus 127 slEeIa~~-~~~~~~wfQlY~---~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~ 202 (383)
T cd03332 127 SIEDVAAA-AGDAPRWFQLYW---PKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFS 202 (383)
T ss_pred CHHHHHhh-cCCCCcEEEeeC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhc
Confidence 45655432 223456677787 6788899999999999999999883 2 321000 00
Q ss_pred hHHHH------------------HHHHHHH----HcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHH
Q 021527 107 GPVIQ------------------AAATRSL----ARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVR 164 (311)
Q Consensus 107 Gp~Iq------------------~a~~~Al----~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~ 164 (311)
.|... ....... ....++ +.++++++.+++|+++-+-.+ .+.+..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW----~~i~~lr~~~~~pvivKgV~~-------~~dA~~a~ 271 (383)
T cd03332 203 DPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTW----EDLAFLREWTDLPIVLKGILH-------PDDARRAV 271 (383)
T ss_pred cchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCH----HHHHHHHHhcCCCEEEecCCC-------HHHHHHHH
Confidence 00000 0000000 111233 567778888889998875322 45677888
Q ss_pred HcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHH
Q 021527 165 DIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLRE 244 (311)
Q Consensus 165 ~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~ 244 (311)
+.|+||+++..-. | |. . + + . ++ ..+.|.+
T Consensus 272 ~~G~d~I~vsnhG--------------G--------------r~--~----d---------~------~-~~-t~~~L~e 300 (383)
T cd03332 272 EAGVDGVVVSNHG--------------G--------------RQ--V----D---------G------S-IA-ALDALPE 300 (383)
T ss_pred HCCCCEEEEcCCC--------------C--------------cC--C----C---------C------C-cC-HHHHHHH
Confidence 8899998876321 1 00 0 0 0 0 11 1244666
Q ss_pred HhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhH-HHHHHHHHHHHHh
Q 021527 245 IKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEG-LKELEKFAKSLKS 308 (311)
Q Consensus 245 vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~-~~~~~~~~~~l~~ 308 (311)
+++.+ ++||++.+||++..|+.+.+..|||+|-+|..+...+... .+++ .+.++.+..+|+.
T Consensus 301 i~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~--G~~gv~~~l~~l~~El~~ 365 (383)
T cd03332 301 IVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALG--GEDGVEHVLRNLLAELDL 365 (383)
T ss_pred HHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhc--cHHHHHHHHHHHHHHHHH
Confidence 65544 5899999999999999999999999999999999887532 1233 2334444455543
No 149
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=98.54 E-value=1.7e-05 Score=77.55 Aligned_cols=173 Identities=15% Similarity=0.237 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCC------------CCCCCC-ChHHHHH-
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVP------------YSDPLA-DGPVIQA- 112 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~P------------fsDP~a-DGp~Iq~- 112 (311)
.+++.-+. ..+...|-.|+ .+|.+.+.+.++..+++|+..|-+ +.| |+-|.. ....+..
T Consensus 112 slEeva~~--~~~~~wfQlY~---~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~ 186 (367)
T PLN02493 112 SVEEVAST--GPGIRFFQLYV---YKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGL 186 (367)
T ss_pred CHHHHHhc--CCCCcEEEEee---cCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhc
Confidence 35554332 23456788898 778899999999999999999888 222 222211 0000100
Q ss_pred ---------------HHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC
Q 021527 113 ---------------AATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP 177 (311)
Q Consensus 113 ---------------a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp 177 (311)
.....+....++ +.++.+|+.+++||++-+-. ..+..+.+.++|+||+++..-.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~tW----~di~wlr~~~~~PiivKgV~-------~~~dA~~a~~~Gvd~I~VsnhG 255 (367)
T PLN02493 187 DLGKMDEANDSGLASYVAGQIDRTLSW----KDVQWLQTITKLPILVKGVL-------TGEDARIAIQAGAAGIIVSNHG 255 (367)
T ss_pred cccCCCcccchhHHHHHhhcCCCCCCH----HHHHHHHhccCCCEEeecCC-------CHHHHHHHHHcCCCEEEECCCC
Confidence 000001112344 46778888899999997642 2467778999999999886431
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEE
Q 021527 178 LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAV 255 (311)
Q Consensus 178 ~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~v 255 (311)
| ... + ..++ ..+.|.++++.. ++||++
T Consensus 256 --------------G-rql-------------------d----------------~~~~-t~~~L~ei~~av~~~~~vi~ 284 (367)
T PLN02493 256 --------------A-RQL-------------------D----------------YVPA-TISALEEVVKATQGRIPVFL 284 (367)
T ss_pred --------------C-CCC-------------------C----------------Cchh-HHHHHHHHHHHhCCCCeEEE
Confidence 1 000 0 0011 123455554432 589999
Q ss_pred eeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 256 GFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 256 GfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
.+||++..|+.+.+-.|||+|-||..+...+..
T Consensus 285 dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~ 317 (367)
T PLN02493 285 DGGVRRGTDVFKALALGASGIFIGRPVVFSLAA 317 (367)
T ss_pred eCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHh
Confidence 999999999999999999999999999987753
No 150
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=98.54 E-value=8.2e-06 Score=79.16 Aligned_cols=186 Identities=20% Similarity=0.257 Sum_probs=108.9
Q ss_pred cEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCC------------CCCCCCChHHH------HHHHHHHHHcCCC
Q 021527 64 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVP------------YSDPLADGPVI------QAAATRSLARGTN 123 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~P------------fsDP~aDGp~I------q~a~~~Al~~G~~ 123 (311)
.|-.|+ ..|.+.+.+.++..+++|++.|-+ +.| |+.|.-.++.- ......-....+.
T Consensus 121 w~Qly~---~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (344)
T cd02922 121 FFQLYV---NKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFID 197 (344)
T ss_pred EEEEee---cCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccC
Confidence 355565 457788999999999999999877 444 22232000000 0000000111111
Q ss_pred HHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCC
Q 021527 124 FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTT 203 (311)
Q Consensus 124 ~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t 203 (311)
.....+.++++++.+++|+++-+- +..+.++.+.++|+|++++..-. |-. + --.+.
T Consensus 198 ~~~~~~~i~~l~~~~~~PvivKgv-------~~~~dA~~a~~~G~d~I~vsnhg--------------G~~-~-d~~~~- 253 (344)
T cd02922 198 PTLTWDDIKWLRKHTKLPIVLKGV-------QTVEDAVLAAEYGVDGIVLSNHG--------------GRQ-L-DTAPA- 253 (344)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEcC-------CCHHHHHHHHHcCCCEEEEECCC--------------ccc-C-CCCCC-
Confidence 112346788888888999998742 23567788889999998886421 100 0 00000
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHH-Hhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLRE-IKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~-vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
+.+ .+.+ +.+ +++. -++||++.+||++..|+.+.+..|||+|-||++
T Consensus 254 ~~~------------------------------~L~~-i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~ 302 (344)
T cd02922 254 PIE------------------------------VLLE-IRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRP 302 (344)
T ss_pred HHH------------------------------HHHH-HHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 000 0111 222 1122 258999999999999999999999999999999
Q ss_pred hhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 282 MVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 282 iv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
+...+...+ .+.-.+.+..+.++|+.
T Consensus 303 ~l~~l~~~G-~~gv~~~l~~l~~EL~~ 328 (344)
T cd02922 303 FLYALSAYG-EEGVEKAIQILKDEIET 328 (344)
T ss_pred HHHHHhhcc-HHHHHHHHHHHHHHHHH
Confidence 999886422 22223344455555554
No 151
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.54 E-value=4.9e-06 Score=75.80 Aligned_cols=197 Identities=20% Similarity=0.269 Sum_probs=139.0
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEE-cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIEL-GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IEl-G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~ 146 (311)
+-.+||| ++.++.+.+.|+|-+-+ ++--| .+| - +-.+++++++.+++.+|+-+-+
T Consensus 26 lrd~GDp-----VelA~~Y~e~GADElvFlDItAs---~~g--------------r--~~~~~vv~r~A~~vfiPltVGG 81 (256)
T COG0107 26 LRDAGDP-----VELAKRYNEEGADELVFLDITAS---SEG--------------R--ETMLDVVERVAEQVFIPLTVGG 81 (256)
T ss_pred hhhcCCh-----HHHHHHHHHcCCCeEEEEecccc---ccc--------------c--hhHHHHHHHHHhhceeeeEecC
Confidence 4478999 99999999999997655 32221 122 1 1236799999999999998865
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE-eC---------------------C--C
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF-TT---------------------P--T 202 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l-is---------------------p--~ 202 (311)
-.+. -+.++.+..+|+|-+-+....++..+-..+.++++|-..|.. +. + -
T Consensus 82 GI~s------~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~ 155 (256)
T COG0107 82 GIRS------VEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGL 155 (256)
T ss_pred CcCC------HHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCc
Confidence 3221 245677889999999887655555555667777888755432 11 1 1
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhH
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSA 281 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSa 281 (311)
...+..++..+...|=|.+-|. .--|.+.+.+- ++++.+++.+++||++.+|..+++|..+++..| ||++...|-
T Consensus 156 d~~~Wa~~~e~~GAGEIlLtsm-D~DGtk~GyDl---~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsi 231 (256)
T COG0107 156 DAVEWAKEVEELGAGEILLTSM-DRDGTKAGYDL---ELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKADAALAASI 231 (256)
T ss_pred CHHHHHHHHHHcCCceEEEeee-cccccccCcCH---HHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhh
Confidence 1236667777777776666433 24566666653 678899999999999999999999999999877 999998888
Q ss_pred hhchhhhcCCchhHHHHHHHHHHH
Q 021527 282 MVKLLGEAQSPEEGLKELEKFAKS 305 (311)
Q Consensus 282 iv~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
|.... -.+.++++|+++
T Consensus 232 FH~~~-------~~i~evK~yL~~ 248 (256)
T COG0107 232 FHFGE-------ITIGEVKEYLAE 248 (256)
T ss_pred hhcCc-------ccHHHHHHHHHH
Confidence 87643 235667777653
No 152
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.52 E-value=1.2e-05 Score=77.34 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=98.6
Q ss_pred cCCccEEEEEeCCCCChhhHHHHHHHHHHCCC--CEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc
Q 021527 60 QGKVALIPYITAGDPDLSTTAEALKLLDSCGS--DIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ 137 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~~~~~e~~~~L~~~Ga--D~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~ 137 (311)
.+...|+.-+..|.. ....+.+..|.++|+ |+|.++ .++|. .+...+++++||++
T Consensus 81 ~~~~~l~v~~~vg~~--~~~~~~~~~Lv~ag~~~d~i~iD------~a~gh---------------~~~~~e~I~~ir~~ 137 (326)
T PRK05458 81 MHEQGLIASISVGVK--DDEYDFVDQLAAEGLTPEYITID------IAHGH---------------SDSVINMIQHIKKH 137 (326)
T ss_pred ccccccEEEEEecCC--HHHHHHHHHHHhcCCCCCEEEEE------CCCCc---------------hHHHHHHHHHHHhh
Confidence 333455666666642 345688888899955 999997 33331 12345678899887
Q ss_pred CC-CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 138 MS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 138 ~~-iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
+. +||+.-.- +..+.+..+.++|+|++.+.--+ ..+ .++ +.
T Consensus 138 ~p~~~vi~g~V-------~t~e~a~~l~~aGad~i~vg~~~----------------G~~----~~t---~~-------- 179 (326)
T PRK05458 138 LPETFVIAGNV-------GTPEAVRELENAGADATKVGIGP----------------GKV----CIT---KI-------- 179 (326)
T ss_pred CCCCeEEEEec-------CCHHHHHHHHHcCcCEEEECCCC----------------Ccc----ccc---cc--------
Confidence 64 77666311 23456777888999997665222 000 011 00
Q ss_pred ceEEEEecCCccCCCCCCC-chHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 217 GFVYLVSSIGVTGARASIS-GHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~-~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
.+|.. .+ .. ...+.++++..++||++.+||+++.|+.+.+..|||+|.+|++|....+
T Consensus 180 ----------~~g~~--~~~w~-l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~e 238 (326)
T PRK05458 180 ----------KTGFG--TGGWQ-LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEE 238 (326)
T ss_pred ----------ccCCC--CCccH-HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCcc
Confidence 00100 11 11 2346666666789999999999999999999999999999999995443
No 153
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=98.52 E-value=9.7e-06 Score=76.19 Aligned_cols=183 Identities=15% Similarity=0.109 Sum_probs=113.2
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecC----
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYY---- 148 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~---- 148 (311)
.+.++..++++.|++.|+|.||+|.|.. .+ .+.+. .+.+. ++.++++++. .+.++..+.-.
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~---~~------~~~~~--~~~~~---~e~i~~~~~~~~~~~l~~~~r~~~~~ 83 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGAT---FD------VCMRF--LNEDP---WERLRELRKAMPNTPLQMLLRGQNLV 83 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcc---hh------hhccc--cCCCH---HHHHHHHHHhCCCCceehhccccccc
Confidence 3457788999999999999999997642 00 00010 11222 3445555432 35566554321
Q ss_pred --cchhccCHHHHHHHHHHcCCcEEEecCC--ChhhHHHHHHHHHHcCCCeEEEe----CCCChHHHHHHHHHh----CC
Q 021527 149 --NPILKRGVDNFMSTVRDIGIRGLVVPDV--PLEETESLQKEAMKNKIELVLFT----TPTTPTDRMKAIVEA----SE 216 (311)
Q Consensus 149 --n~i~~~g~~~fi~~~~~aGadGviipDl--p~ee~~~~~~~~~~~gi~~I~li----sp~t~~eri~~i~~~----a~ 216 (311)
++.-.-..+.+++.+.++|++.+-+-+- .++...+..+.++++|+...+.+ ++.++++...++++. .-
T Consensus 84 ~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga 163 (275)
T cd07937 84 GYRHYPDDVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGA 163 (275)
T ss_pred CccCCCcHHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCC
Confidence 1111112578999999999998777532 23567778888999998766533 244445554444332 33
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
.-+|+....| . ..|..+.++++.+|+..++|+-+ .+|... .+....+++||+.|
T Consensus 164 ~~i~l~DT~G---~--~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~-aN~laA~~aGa~~v 221 (275)
T cd07937 164 DSICIKDMAG---L--LTPYAAYELVKALKKEVGLPIHLHTHDTSGLAV-ATYLAAAEAGVDIV 221 (275)
T ss_pred CEEEEcCCCC---C--CCHHHHHHHHHHHHHhCCCeEEEEecCCCChHH-HHHHHHHHhCCCEE
Confidence 3466665444 3 34778899999999987777766 456654 44555667899876
No 154
>PRK06801 hypothetical protein; Provisional
Probab=98.52 E-value=8e-05 Score=70.57 Aligned_cols=210 Identities=14% Similarity=0.108 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..+++ +-++..|=+ .+++.+.-++++.++.++.+|---.|-.-.+ ...+.+.
T Consensus 5 ~~~~~l~~A~~~-~yaV~Afn~---~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~-----------------~~~~~~~ 63 (286)
T PRK06801 5 SLANGLAHARKH-GYALGAFNV---LDSHFLRALFAAAKQERSPFIINIAEVHFKY-----------------ISLESLV 63 (286)
T ss_pred cHHHHHHHHHHC-CceEEEEee---CCHHHHHHHHHHHHHHCCCEEEEeCcchhhc-----------------CCHHHHH
Confidence 356777766544 345555543 3789999999999999998865432221111 2345566
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE---Ee
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL---FT 199 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~---li 199 (311)
.+++.+.++.++||.+.. + +.-..+.++.+.+.|++.|.+ .++|+|| ..++.+.++.+|+.+=. .+
T Consensus 64 ~~~~~~a~~~~vpV~lHl--D---H~~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~v 138 (286)
T PRK06801 64 EAVKFEAARHDIPVVLNL--D---HGLHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAV 138 (286)
T ss_pred HHHHHHHHHCCCCEEEEC--C---CCCCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcc
Confidence 788888888999999853 2 222346889999999999998 5788776 56788889999986310 01
Q ss_pred --------------CCCChHHHHHHHHHhCCceEEEEecCCccCCCCCC-CchHHHHHHHHhhcCCCcEEEee--CCCCH
Q 021527 200 --------------TPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASI-SGHVQTLLREIKESSTKPVAVGF--GISKP 262 (311)
Q Consensus 200 --------------sp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~-~~~~~~~l~~vk~~~~~Pv~vGf--GIst~ 262 (311)
+-.|.++...+..+ ..|..|+--..|.|.....- +.--.+.++++++.+++|++.=+ ||+ .
T Consensus 139 gg~e~~v~~~~~~~~~~T~pe~a~~f~~-~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~-~ 216 (286)
T PRK06801 139 GGDEGGALYGEADSAKFTDPQLARDFVD-RTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGIS-D 216 (286)
T ss_pred cCCCCCcccCCcccccCCCHHHHHHHHH-HHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCC-H
Confidence 01233344444443 24666773355655443222 22234679999888899986644 486 7
Q ss_pred HHHHHHHHcCCcEEEEhhHhhchh
Q 021527 263 EHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 263 e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
|+++++.+.|++.|=|+|.+....
T Consensus 217 e~~~~~i~~Gi~KINv~T~~~~a~ 240 (286)
T PRK06801 217 ADFRRAIELGIHKINFYTGMSQAA 240 (286)
T ss_pred HHHHHHHHcCCcEEEehhHHHHHH
Confidence 999999999999999999997654
No 155
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.51 E-value=3.5e-06 Score=80.37 Aligned_cols=163 Identities=20% Similarity=0.227 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHH-----HHHHHHcCCCHH----HHHHHHHHhhccC--CCcEEEEe
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA-----ATRSLARGTNFN----AILSMLKEVVPQM--SCPIALFT 146 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a-----~~~Al~~G~~~~----~~~~~i~~ir~~~--~iPiilm~ 146 (311)
.+.+.++.+.++|+|.|||-. +.|-.+.+- +.|--+.|-+++ -++++++++|+.+ ++||.+-.
T Consensus 142 ~~~~aA~~a~~aGfDgveih~------~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vri 215 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIHG------AHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRL 215 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEcc------hhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 578889999999999999942 111111110 111122333332 3467888888876 66777743
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
..+... -+| +..++..++.+.+.+.|++.+-+...... +.. . .. +
T Consensus 216 s~~~~~---------------~~g-----~~~~e~~~la~~l~~~G~d~i~vs~g~~~-~~~---------~-~~----~ 260 (327)
T cd02803 216 SADDFV---------------PGG-----LTLEEAIEIAKALEEAGVDALHVSGGSYE-SPP---------P-II----P 260 (327)
T ss_pred chhccC---------------CCC-----CCHHHHHHHHHHHHHcCCCEEEeCCCCCc-ccc---------c-cc----C
Confidence 111000 011 34466667777777777776655432210 000 0 00 0
Q ss_pred ccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhc
Q 021527 227 VTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVK 284 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~ 284 (311)
++. .......+.++++|+.+++||++++||++++++.++++. |||.|-+|++++.
T Consensus 261 -~~~--~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 261 -PPY--VPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred -CCC--CCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence 000 001223467888999899999999999999999999998 7999999999886
No 156
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.51 E-value=1.3e-05 Score=78.36 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCC--------ChhhHHHHHHHHHHcCCC
Q 021527 123 NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDV--------PLEETESLQKEAMKNKIE 194 (311)
Q Consensus 123 ~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDl--------p~ee~~~~~~~~~~~gi~ 194 (311)
+.+.+.++++++|+.. +.+..-.++. ...++++.+.++|+|.|.+..= .-.+-..+.+.+++.++.
T Consensus 117 ~p~l~~~ii~~vr~a~---VtvkiRl~~~---~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IP 190 (369)
T TIGR01304 117 KPELLGERIAEVRDSG---VITAVRVSPQ---NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVP 190 (369)
T ss_pred ChHHHHHHHHHHHhcc---eEEEEecCCc---CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCC
Confidence 3445567888888753 3333333432 4578999999999999987510 111233456666777876
Q ss_pred eEEEeCCCChHHHHHHHHHhCCceEEEE-ecCC-ccCCC-CCCCchHHHHHHHHhh-------cC---CCcEEEeeCCCC
Q 021527 195 LVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIG-VTGAR-ASISGHVQTLLREIKE-------SS---TKPVAVGFGISK 261 (311)
Q Consensus 195 ~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G-~TG~~-~~~~~~~~~~l~~vk~-------~~---~~Pv~vGfGIst 261 (311)
+|. -.-.+. +...+..+ .|...++ ...| .|+.. .+........+.++.+ .+ .+||++.+||++
T Consensus 191 VI~-G~V~t~-e~A~~~~~--aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~t 266 (369)
T TIGR01304 191 VIA-GGVNDY-TTALHLMR--TGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIET 266 (369)
T ss_pred EEE-eCCCCH-HHHHHHHH--cCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence 553 123343 43444434 3444333 2111 11110 0111112222333221 22 389999999999
Q ss_pred HHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 262 PEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 262 ~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
..++.+.+..|||+|.+||+|....+.
T Consensus 267 g~di~kAlAlGAdaV~iGt~~a~a~Ea 293 (369)
T TIGR01304 267 SGDLVKAIACGADAVVLGSPLARAAEA 293 (369)
T ss_pred HHHHHHHHHcCCCEeeeHHHHHhhhcC
Confidence 999999999999999999999998764
No 157
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=98.48 E-value=1.5e-05 Score=73.35 Aligned_cols=166 Identities=16% Similarity=0.189 Sum_probs=106.1
Q ss_pred ChhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHH
Q 021527 46 PTVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFN 125 (311)
Q Consensus 46 ~m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~ 125 (311)
+..++++.+.+++..+ ..+++=+...+| +.+.+.++.+.+. +|+|||..--..|- +...-.-.+| ..+.+
T Consensus 57 ~~~~~~~~~~~~~~~~-~p~~vqi~g~~~--~~~~~aa~~~~~~-~~~ielN~gCP~~~----v~~~g~G~~L--l~~p~ 126 (233)
T cd02911 57 PLEFIEGEIKALKDSN-VLVGVNVRSSSL--EPLLNAAALVAKN-AAILEINAHCRQPE----MVEAGAGEAL--LKDPE 126 (233)
T ss_pred hHHHHHHHHHHhhccC-CeEEEEecCCCH--HHHHHHHHHHhhc-CCEEEEECCCCcHH----HhcCCcchHH--cCCHH
Confidence 4567888777776554 356655555555 7888999998875 69999964433220 1000000011 13567
Q ss_pred HHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 126 AILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 126 ~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
.+.++++.+|+ .++||.+-.-.+.- ....++++.+.++|+|++++-..
T Consensus 127 ~l~eiv~avr~-~~~pVsvKir~g~~--~~~~~la~~l~~aG~d~ihv~~~----------------------------- 174 (233)
T cd02911 127 RLSEFIKALKE-TGVPVSVKIRAGVD--VDDEELARLIEKAGADIIHVDAM----------------------------- 174 (233)
T ss_pred HHHHHHHHHHh-cCCCEEEEEcCCcC--cCHHHHHHHHHHhCCCEEEECcC-----------------------------
Confidence 77888999987 68998886422200 12345666666677776533110
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
..|. ..+ .+.+++++ +++||+..+||.+++++.+++..|||+|-||.+
T Consensus 175 ---------------------~~g~--~ad---~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 175 ---------------------DPGN--HAD---LKKIRDIS--TELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred ---------------------CCCC--CCc---HHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 0010 011 24577776 689999999999999999999999999999998
No 158
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=98.48 E-value=7.8e-05 Score=67.47 Aligned_cols=192 Identities=22% Similarity=0.313 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCCh--hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDL--STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFN 125 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~--~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~ 125 (311)
+.+++.|.. |++| =+..|--|+ +....++++.+.+|++.+-+- +|.
T Consensus 3 ~~l~~~~~~-----~~al--KVIsGLnNFd~~~V~~i~~AA~~ggAt~vDIA-------adp------------------ 50 (242)
T PF04481_consen 3 SKLQQAFAQ-----RRAL--KVISGLNNFDAESVAAIVKAAEIGGATFVDIA-------ADP------------------ 50 (242)
T ss_pred hHHHHHHHh-----Ccch--hheeCccccCHHHHHHHHHHHHccCCceEEec-------CCH------------------
Confidence 367777875 5555 234566555 678999999999999999994 332
Q ss_pred HHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC----------hhhHHHHHHHHHHcCCCe
Q 021527 126 AILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP----------LEETESLQKEAMKNKIEL 195 (311)
Q Consensus 126 ~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp----------~ee~~~~~~~~~~~gi~~ 195 (311)
++++.+++..++||.+-+ -.++.|.. |.++|+|-+=+.+.. .||..++.++.|+. +..
T Consensus 51 ---~LV~~~~~~s~lPICVSa-------Vep~~f~~-aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~L-LP~ 118 (242)
T PF04481_consen 51 ---ELVKLAKSLSNLPICVSA-------VEPELFVA-AVKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSL-LPD 118 (242)
T ss_pred ---HHHHHHHHhCCCCeEeec-------CCHHHHHH-HHHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHh-CCC
Confidence 466677777899998843 23456665 778899988776432 24555555555553 222
Q ss_pred EEE--eCCCC-hHHHHHHHHHh--CCceEEEEecCCccCCCCCCCchHHHHH----------HHHhhcCCCcEEEeeCCC
Q 021527 196 VLF--TTPTT-PTDRMKAIVEA--SEGFVYLVSSIGVTGARASISGHVQTLL----------REIKESSTKPVAVGFGIS 260 (311)
Q Consensus 196 I~l--isp~t-~~eri~~i~~~--a~gfiY~vs~~G~TG~~~~~~~~~~~~l----------~~vk~~~~~Pv~vGfGIs 260 (311)
+++ .-|.+ +-+....++.. ..|..++.+- |.|-++ ...+.+..++ ..+.+.+++||++..|++
T Consensus 119 ~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTE-Ggtss~-p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS 196 (242)
T PF04481_consen 119 ITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTE-GGTSSK-PTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLS 196 (242)
T ss_pred CceEEecCccccHHHHHHHHHHHHHhCCcEEEcC-CCCCCC-CCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcc
Confidence 322 22433 22332222221 4577777754 333332 2223333333 345666789999999998
Q ss_pred CHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 261 KPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 261 t~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
. -++--...+||.||=|||++-+.-
T Consensus 197 ~-vT~PmAiaaGAsGVGVGSavn~Ln 221 (242)
T PF04481_consen 197 A-VTAPMAIAAGASGVGVGSAVNRLN 221 (242)
T ss_pred h-hhHHHHHHcCCcccchhHHhhhcc
Confidence 5 678888899999999999997743
No 159
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=98.46 E-value=2.6e-05 Score=72.94 Aligned_cols=177 Identities=18% Similarity=0.241 Sum_probs=114.1
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
|.+...+.++.+.+.|||+|-+|...+ | . ...+.+...++.+++.+++|+.+.+|-
T Consensus 23 d~~~i~~~A~~~~~~GAdiIDVg~~~~-~-~----------------eE~~r~~~~v~~l~~~~~~plsIDT~~------ 78 (261)
T PRK07535 23 DAAFIQKLALKQAEAGADYLDVNAGTA-V-E----------------EEPETMEWLVETVQEVVDVPLCIDSPN------ 78 (261)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCC-c-h----------------hHHHHHHHHHHHHHHhCCCCEEEeCCC------
Confidence 347788999999999999999996631 1 0 112344567778887789999998863
Q ss_pred CHHHHHHHHHHc--CCcEEEecCCChhh--HHHHHHHHHHcCCCeEEEeC-----CCChHHHHHHHHHh-----CCce--
Q 021527 155 GVDNFMSTVRDI--GIRGLVVPDVPLEE--TESLQKEAMKNKIELVLFTT-----PTTPTDRMKAIVEA-----SEGF-- 218 (311)
Q Consensus 155 g~~~fi~~~~~a--GadGviipDlp~ee--~~~~~~~~~~~gi~~I~lis-----p~t~~eri~~i~~~-----a~gf-- 218 (311)
-+.++.+.+. |++ |+.|+..++ ..+..+.++++|...|.+.. |.|.++|++...+. ..|+
T Consensus 79 --~~v~eaaL~~~~G~~--iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~ 154 (261)
T PRK07535 79 --PAAIEAGLKVAKGPP--LINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPP 154 (261)
T ss_pred --HHHHHHHHHhCCCCC--EEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCH
Confidence 2345566665 776 566766543 45677889999998887654 55555554332221 3454
Q ss_pred --EEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEe-----eCCCCHHHHHHH-----HHcCCcEEEEh
Q 021527 219 --VYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVG-----FGISKPEHVQQV-----AGWGADGVIVG 279 (311)
Q Consensus 219 --iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vG-----fGIst~e~v~~v-----~~~GADGvIVG 279 (311)
+++-+..|.-|..........+.++++|+.. +.|+.+| ||.-...-+..+ .++|.|.+|+=
T Consensus 155 ~~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfglp~r~~in~~fl~~a~~~Gl~~aI~n 228 (261)
T PRK07535 155 EDIYIDPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMDSAILD 228 (261)
T ss_pred hHEEEeCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCCcchHHHHHHHHHHHHHcCCCEEeeC
Confidence 5665655533332222334456677777765 7999986 777544444333 57889988874
No 160
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.44 E-value=5.2e-05 Score=70.90 Aligned_cols=186 Identities=15% Similarity=0.197 Sum_probs=112.2
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc--cCCCcEEEE-----
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP--QMSCPIALF----- 145 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~--~~~iPiilm----- 145 (311)
+..+++..+.++...+.|+|.+-+. | | +++..++ ..++|+++-
T Consensus 35 ~~~~~d~~~~~~~a~~~~~~av~v~-----~---~----------------------~~~~~~~~~~~~~~l~~~i~~~~ 84 (267)
T PRK07226 35 IDGLVDIRDTVNKVAEGGADAVLMH-----K---G----------------------LARHGHRGYGRDVGLIVHLSAST 84 (267)
T ss_pred CcCcCCHHHHHHHHHhcCCCEEEeC-----H---h----------------------HHhhhccccCCCCcEEEEEcCCC
Confidence 3456788889999999999999984 2 2 2222222 234665552
Q ss_pred ecCcchhccCHHHHHHHHHHcCCcEEEec----CCCh----hhHHHHHHHHHHcCCCeEEEe--------CCCChHHHHH
Q 021527 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVP----DVPL----EETESLQKEAMKNKIELVLFT--------TPTTPTDRMK 209 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~aGadGviip----Dlp~----ee~~~~~~~~~~~gi~~I~li--------sp~t~~eri~ 209 (311)
+|+..-...-.-..++++.+.|+|.+-+. ++.. ++..++.+.|+++|+.++... +..++ +.+.
T Consensus 85 ~~~~~~~~~~~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~-~~i~ 163 (267)
T PRK07226 85 SLSPDPNDKVLVGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDP-EVVA 163 (267)
T ss_pred CCCCCCCcceeeecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccH-HHHH
Confidence 22210000111235678999999987764 1211 245667888899999876642 22222 2222
Q ss_pred HHHHh--CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCC--CHHHHHHH----HHcCCcEEEEhhH
Q 021527 210 AIVEA--SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGIS--KPEHVQQV----AGWGADGVIVGSA 281 (311)
Q Consensus 210 ~i~~~--a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIs--t~e~v~~v----~~~GADGvIVGSa 281 (311)
..++. ..|..|+=+. .+| + .+.++++.+...+||.+-+||+ |.+++.+. +++||+|+.+|++
T Consensus 164 ~a~~~a~e~GAD~vKt~--~~~-------~-~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~ 233 (267)
T PRK07226 164 HAARVAAELGADIVKTN--YTG-------D-PESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRN 233 (267)
T ss_pred HHHHHHHHHCCCEEeeC--CCC-------C-HHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhh
Confidence 22121 2466777332 222 1 2567777776789999999999 76655555 5999999999999
Q ss_pred hhchhhhcCCchhHHHHHHHHH
Q 021527 282 MVKLLGEAQSPEEGLKELEKFA 303 (311)
Q Consensus 282 iv~~~~~~~~~~~~~~~~~~~~ 303 (311)
+.+. .++...++++...+
T Consensus 234 i~~~----~~p~~~~~~l~~~v 251 (267)
T PRK07226 234 VFQH----EDPEAITRAISAVV 251 (267)
T ss_pred hhcC----CCHHHHHHHHHHHH
Confidence 9973 23455555555444
No 161
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.44 E-value=3e-05 Score=72.10 Aligned_cols=210 Identities=15% Similarity=0.182 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHcCCccEEEEE----eCC-CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCC
Q 021527 49 GLAETFTRLKKQGKVALIPYI----TAG-DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi----~~G-~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~ 123 (311)
|++..|.. +.| +.++.-| ..| +++.++..+.++...+.|+|.+-+- | | .+.
T Consensus 6 rl~r~~~~--~~g-~~~~~aiDh~~l~gp~~~~~~~~~~~~~a~~~~~~~v~~~-----p---~-~~~------------ 61 (258)
T TIGR01949 6 RLERIFNR--ESG-RTVIVPMDHGVSNGPIKGLVDIRKTVNEVAEGGADAVLLH-----K---G-IVR------------ 61 (258)
T ss_pred HHHHhccC--CCC-CEEEEECCCccccCCCCCcCCHHHHHHHHHhcCCCEEEeC-----c---c-hhh------------
Confidence 44555531 234 5666655 222 4566788889999999999999984 2 1 011
Q ss_pred HHHHHHHHHHhhccCCCcEEEEe-cCcchhccC----HHHHHHHHHHcCCcEEEecCC--C------hhhHHHHHHHHHH
Q 021527 124 FNAILSMLKEVVPQMSCPIALFT-YYNPILKRG----VDNFMSTVRDIGIRGLVVPDV--P------LEETESLQKEAMK 190 (311)
Q Consensus 124 ~~~~~~~i~~ir~~~~iPiilm~-Y~n~i~~~g----~~~fi~~~~~aGadGviipDl--p------~ee~~~~~~~~~~ 190 (311)
...+. ...++++++-. +..|..... ....++.+.+.|++++-+-+- + +++..++.+.|++
T Consensus 62 ------~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~ 134 (258)
T TIGR01949 62 ------RGHRG-YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDD 134 (258)
T ss_pred ------hcccc-cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHH
Confidence 11111 12355654432 122222111 223578899999998877432 1 1245667788889
Q ss_pred cCCCeEEEeC------CCChHHHHHHHHH--hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCC--
Q 021527 191 NKIELVLFTT------PTTPTDRMKAIVE--ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGIS-- 260 (311)
Q Consensus 191 ~gi~~I~lis------p~t~~eri~~i~~--~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIs-- 260 (311)
+|+.++.... +..+.+.+...++ ...|..|+-+.. .+ + .+.++++.+..++||++-+||+
T Consensus 135 ~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~--~~-------~-~~~l~~~~~~~~iPVva~GGi~~~ 204 (258)
T TIGR01949 135 WGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPY--TG-------D-IDSFRDVVKGCPAPVVVAGGPKTN 204 (258)
T ss_pred cCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccC--CC-------C-HHHHHHHHHhCCCcEEEecCCCCC
Confidence 9988766322 2222222222111 135667764321 11 1 3568888777789998889998
Q ss_pred C----HHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHH
Q 021527 261 K----PEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFA 303 (311)
Q Consensus 261 t----~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~ 303 (311)
+ .+++.++.+.||+|+.+|+++.+.- ++...++++.+.+
T Consensus 205 ~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~----dp~~~~~~l~~~i 247 (258)
T TIGR01949 205 SDREFLQMIKDAMEAGAAGVAVGRNIFQHD----DPVGITKAVCKIV 247 (258)
T ss_pred CHHHHHHHHHHHHHcCCcEEehhhHhhcCC----CHHHHHHHHHHHH
Confidence 4 6778888899999999999999742 3444444444433
No 162
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.44 E-value=2.2e-05 Score=75.39 Aligned_cols=159 Identities=19% Similarity=0.286 Sum_probs=110.2
Q ss_pred HHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCC--CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 57 LKKQGKVALIPYITAGDPDLSTTAEALKLLDSCG--SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 57 ~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~G--aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
.++.+.+.+...+..|.. +...+.+..|.++| +|.|-++ .+.|.- +.+++.++++
T Consensus 75 vrk~k~~~L~v~~SvG~t--~e~~~r~~~lv~a~~~~d~i~~D------~ahg~s---------------~~~~~~i~~i 131 (321)
T TIGR01306 75 IKDMQERGLFASISVGVK--ACEYEFVTQLAEEALTPEYITID------IAHGHS---------------NSVINMIKHI 131 (321)
T ss_pred HHhccccccEEEEEcCCC--HHHHHHHHHHHhcCCCCCEEEEe------CccCch---------------HHHHHHHHHH
Confidence 344444556777778876 44468888899999 7999997 455521 3567899999
Q ss_pred hccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHh
Q 021527 135 VPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEA 214 (311)
Q Consensus 135 r~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~ 214 (311)
|+.+..|.++-+ | .+..+.++.+.++|+|++.+.--| ..+ .+| |+
T Consensus 132 ~~~~p~~~vi~G--n----V~t~e~a~~l~~aGad~I~V~~G~----------------G~~----~~t---r~------ 176 (321)
T TIGR01306 132 KTHLPDSFVIAG--N----VGTPEAVRELENAGADATKVGIGP----------------GKV----CIT---KI------ 176 (321)
T ss_pred HHhCCCCEEEEe--c----CCCHHHHHHHHHcCcCEEEECCCC----------------Ccc----ccc---ee------
Confidence 998888877655 2 124678889999999998765222 111 011 11
Q ss_pred CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 215 SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 215 a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
++..|.. .+.+ ..+.++++..++||++.+||++..|+.+.+.+|||+|-+|+.|...-+
T Consensus 177 -------~~g~g~~------~~~l-~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~E 235 (321)
T TIGR01306 177 -------KTGFGTG------GWQL-AALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEE 235 (321)
T ss_pred -------eeccCCC------chHH-HHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCccc
Confidence 0111110 1222 457777777789999999999999999999999999999999976553
No 163
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=98.44 E-value=3.2e-05 Score=77.60 Aligned_cols=186 Identities=16% Similarity=0.180 Sum_probs=118.2
Q ss_pred CCccEEEEEeCCCCChh------hHHHHHHHHHHCCCCEEEEcCCCCCCC-CChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 021527 61 GKVALIPYITAGDPDLS------TTAEALKLLDSCGSDIIELGVPYSDPL-ADGPVIQAAATRSLARGTNFNAILSMLKE 133 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~------~~~e~~~~L~~~GaD~IElG~PfsDP~-aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ 133 (311)
++..+|.=+=--.|... ...++++.+ ++||++|-+= +||- ..| + ++.+++
T Consensus 48 ~~~~vIaEiKraSPs~G~i~~~~d~~~~a~~y-~~gA~aiSVl---Te~~~F~G---------------s----~~~l~~ 104 (454)
T PRK09427 48 PKTAFILECKKASPSKGLIRDDFDPAEIARVY-KHYASAISVL---TDEKYFQG---------------S----FDFLPI 104 (454)
T ss_pred CCCceEEEeecCCCCCCccCCCCCHHHHHHHH-HcCCeEEEEe---cCcCcCCC---------------C----HHHHHH
Confidence 35678877744445431 457888888 8889999984 3332 233 2 357778
Q ss_pred hhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHH
Q 021527 134 VVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAI 211 (311)
Q Consensus 134 ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i 211 (311)
+|+.+++||+--=+ ..- +--+..+...|||.+++. =|+.++..++.+.++..|++.+.=+. + .+.++..
T Consensus 105 vr~~v~~PvLrKDF----iid--~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh--~-~~El~~a 175 (454)
T PRK09427 105 VRAIVTQPILCKDF----IID--PYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVS--N-EEELERA 175 (454)
T ss_pred HHHhCCCCEEeccc----cCC--HHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEEC--C-HHHHHHH
Confidence 88888999876321 111 223567888999998874 34446788999999999999776543 3 3444444
Q ss_pred HHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 212 VEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 212 ~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.+....++ -+-.... ..+..++ +.-.++.... ++.++...||+|++|+..+.. |+|||.||+++++.
T Consensus 176 l~~~a~ii-GiNnRdL----~t~~vd~-~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~~lm~~ 244 (454)
T PRK09427 176 IALGAKVI-GINNRNL----RDLSIDL-NRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIGSSLMAE 244 (454)
T ss_pred HhCCCCEE-EEeCCCC----ccceECH-HHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECHHHcCC
Confidence 34332332 2211111 0111121 2233333333 567788999999999999875 69999999999994
No 164
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.43 E-value=7.3e-06 Score=78.97 Aligned_cols=155 Identities=19% Similarity=0.269 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHCCCCEEEEcC-----------CCCCCCCC--hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcE
Q 021527 78 TTAEALKLLDSCGSDIIELGV-----------PYSDPLAD--GPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPI 142 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~-----------PfsDP~aD--Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPi 142 (311)
.+.+.++.+.++|.|.|||-. |.++.--| |-.+.+ +.+-.+++++.||+.+ +.||
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~n----------r~rf~~eiv~aIR~~vG~d~~v 224 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLEN----------RMRFLLEVVDAVRAVWPEDKPL 224 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHH----------HhHHHHHHHHHHHHHcCCCceE
Confidence 578888999999999999953 65555555 322222 2244577888888877 6777
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
.+-. | ..++. + ..+..++..++.+.+.+.|++.+-+.....+.. .. +
T Consensus 225 ~vri--~------~~~~~--------~----~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~---------~~--~-- 271 (336)
T cd02932 225 FVRI--S------ATDWV--------E----GGWDLEDSVELAKALKELGVDLIDVSSGGNSPA---------QK--I-- 271 (336)
T ss_pred EEEE--c------ccccC--------C----CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcc---------cc--c--
Confidence 7632 2 11111 0 112246777777788888887665432111000 00 0
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.. .+....+.++++|+.+++||++++||.+++++.++++.| +|.|-+|.+++.
T Consensus 272 -----~~----~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 272 -----PV----GPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred -----CC----CccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence 00 011123678889999999999999999999999999988 999999998886
No 165
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=98.43 E-value=3.5e-05 Score=75.30 Aligned_cols=192 Identities=18% Similarity=0.186 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc--CC------------CCCCCCChHHHHHH-
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG--VP------------YSDPLADGPVIQAA- 113 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG--~P------------fsDP~aDGp~Iq~a- 113 (311)
.+++.-.. ...+...|..|+ .+|.+.+.+.++..+++|+..|-+- .| |+-|..........
T Consensus 122 slEev~~~-~~~~~~wfQlY~---~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~ 197 (367)
T TIGR02708 122 DLPEISEA-LNGTPHWFQFYM---SKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLP 197 (367)
T ss_pred CHHHHHhh-cCCCceEEEEec---cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcc
Confidence 45555432 112355777787 7788899999999999999999883 22 33332111000000
Q ss_pred --------H-HHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHH
Q 021527 114 --------A-TRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESL 184 (311)
Q Consensus 114 --------~-~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~ 184 (311)
. ........++ +.++++++.+++||++-+- +..+.++.+.++|+|++++..-.-
T Consensus 198 ~~~~~~~~~~~~~~~~~~~w----~~i~~l~~~~~~PvivKGv-------~~~eda~~a~~~Gvd~I~VS~HGG------ 260 (367)
T TIGR02708 198 TGAGKSMDNVYKSAKQKLSP----RDIEEIAGYSGLPVYVKGP-------QCPEDADRALKAGASGIWVTNHGG------ 260 (367)
T ss_pred cCCccchhhhccccCCCCCH----HHHHHHHHhcCCCEEEeCC-------CCHHHHHHHHHcCcCEEEECCcCc------
Confidence 0 0000111333 4678888888999999752 225677788889999887763220
Q ss_pred HHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCH
Q 021527 185 QKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKP 262 (311)
Q Consensus 185 ~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~ 262 (311)
+ .++ + .+.. .+.|.++++.. ++||++.+||++.
T Consensus 261 ----r--q~~----------------------------------~----~~a~-~~~L~ei~~av~~~i~vi~dGGIr~g 295 (367)
T TIGR02708 261 ----R--QLD----------------------------------G----GPAA-FDSLQEVAEAVDKRVPIVFDSGVRRG 295 (367)
T ss_pred ----c--CCC----------------------------------C----CCcH-HHHHHHHHHHhCCCCcEEeeCCcCCH
Confidence 0 000 0 0111 23455555543 4899999999999
Q ss_pred HHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHH-HHHHHHHHHHHh
Q 021527 263 EHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL-KELEKFAKSLKS 308 (311)
Q Consensus 263 e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~-~~~~~~~~~l~~ 308 (311)
.|+.+.+..|||+|-||-.+...+... .++++ ..++.+..+|+.
T Consensus 296 ~Dv~KaLalGAd~V~igR~~l~~la~~--G~~gv~~~l~~l~~El~~ 340 (367)
T TIGR02708 296 QHVFKALASGADLVALGRPVIYGLALG--GSQGARQVFEYLNKELKR 340 (367)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987532 12333 334455555554
No 166
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.43 E-value=5.9e-06 Score=83.79 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhccCH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGV 156 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g~ 156 (311)
...+.++.|.++|+|+|++.. ++| .+. ..++.++++|+.+ ++||+.- | + ..
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~------a~G--------------~s~-~~~~~i~~ik~~~~~~~v~aG---~-V---~t 292 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDS------SQG--------------NSI-YQIDMIKKLKSNYPHVDIIAG---N-V---VT 292 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEec------CCC--------------Cch-HHHHHHHHHHhhCCCceEEEC---C-c---CC
Confidence 347999999999999999973 233 222 2356888888874 6777762 2 1 12
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCc
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISG 236 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~ 236 (311)
.+-++.+.++|+|++.+. +.+ | -+ .+|. + ++|. +.|.
T Consensus 293 ~~~a~~~~~aGad~I~vg-~g~-------------G--s~----~~t~---~------------------~~~~--g~p~ 329 (495)
T PTZ00314 293 ADQAKNLIDAGADGLRIG-MGS-------------G--SI----CITQ---E------------------VCAV--GRPQ 329 (495)
T ss_pred HHHHHHHHHcCCCEEEEC-CcC-------------C--cc----cccc---h------------------hccC--CCCh
Confidence 457788899999998653 110 1 00 0111 0 0110 1111
Q ss_pred -hHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 237 -HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 237 -~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
.....+.++.+..++|+++.+||.++.++.+.+.+|||+|.+||.|...-+
T Consensus 330 ~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e 381 (495)
T PTZ00314 330 ASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEE 381 (495)
T ss_pred HHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccc
Confidence 111224444444579999999999999999999999999999999988553
No 167
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=98.43 E-value=1.6e-05 Score=72.43 Aligned_cols=173 Identities=20% Similarity=0.311 Sum_probs=107.1
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcch
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPI 151 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i 151 (311)
+...+...++++.|.++|+|.||+|+|+..| .+ .+.++++++. .+.++..++..+..
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~---~~-------------------~~~v~~~~~~~~~~~~~~~~~~~~~ 67 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVGFPFASE---DD-------------------FEQVRRLREALPNARLQALCRANEE 67 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEEHCTSSH---HH-------------------HHHHHHHHHHHHSSEEEEEEESCHH
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEcccccCH---HH-------------------HHHhhhhhhhhcccccceeeeehHH
Confidence 4556889999999999999999999888654 11 1233333321 22566666665422
Q ss_pred hccCHHHHHHHHHHcCCcEEEecCCC----------------hhhHHHHHHHHHHcCCCeEEEeCC--CChHHHHHHHHH
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVPDVP----------------LEETESLQKEAMKNKIELVLFTTP--TTPTDRMKAIVE 213 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviipDlp----------------~ee~~~~~~~~~~~gi~~I~lisp--~t~~eri~~i~~ 213 (311)
.+++.++.++++|++.+-+.+-- .+...+..+.+++.|++..+.... .++.+.+.++.+
T Consensus 68 ---~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~ 144 (237)
T PF00682_consen 68 ---DIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAE 144 (237)
T ss_dssp ---HHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHH
T ss_pred ---HHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHH
Confidence 13445566677999988875422 235667788899999987554421 223344333333
Q ss_pred ----hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 214 ----ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 214 ----~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
.....+|+....|. ..|..+.++++.+|+..+ +|+-+ .+|-. ..+.-..+++|||-|
T Consensus 145 ~~~~~g~~~i~l~Dt~G~-----~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla-~An~laA~~aGa~~i 210 (237)
T PF00682_consen 145 ALAEAGADIIYLADTVGI-----MTPEDVAELVRALREALPDIPLGFHAHNDLGLA-VANALAALEAGADRI 210 (237)
T ss_dssp HHHHHT-SEEEEEETTS------S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-H-HHHHHHHHHTT-SEE
T ss_pred HHHHcCCeEEEeeCccCC-----cCHHHHHHHHHHHHHhccCCeEEEEecCCccch-hHHHHHHHHcCCCEE
Confidence 34456788776553 346778999999999875 66655 23333 245666778999996
No 168
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=98.42 E-value=2.1e-05 Score=73.22 Aligned_cols=182 Identities=18% Similarity=0.271 Sum_probs=107.8
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchh
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPIL 152 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~ 152 (311)
-+.+...++++.|.+.|+|.||+|+| +.. .|... ..+....+-.+.++.+++. .+.++..|.- +
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~-~~~--~~~~~--------~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~--~-- 83 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHG-DGL--GGSSL--------NYGFAAHTDEEYLEAAAEALKQAKLGVLLL--P-- 83 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecC-CCC--CCccc--------ccCCCCCChHHHHHHHHHhccCCEEEEEec--C--
Confidence 44578899999999999999999976 211 00000 0000000112345555432 3456666531 0
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCC--hhhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh----CCceEEEEec
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVP--LEETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA----SEGFVYLVSS 224 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp--~ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~----a~gfiY~vs~ 224 (311)
..+-.++++.+.++|+|.+-+.+-. .++..+..+.+++.|+.....+ +...+++.+.++++. ....+|+...
T Consensus 84 ~~~~~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT 163 (263)
T cd07943 84 GIGTVDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDS 163 (263)
T ss_pred CccCHHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1122478899999999987765322 2356778888899998765544 223344544443333 3345677654
Q ss_pred CCccCCCCCCCchHHHHHHHHhhcCCC-cEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 225 IGVTGARASISGHVQTLLREIKESSTK-PVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 225 ~G~TG~~~~~~~~~~~~l~~vk~~~~~-Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
.| . ..|..+.++++.+|+..+. |+-+ .+|... .+.....++|||.|
T Consensus 164 ~G---~--~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~-AN~laAi~aGa~~v 214 (263)
T cd07943 164 AG---A--MLPDDVRERVRALREALDPTPVGFHGHNNLGLAV-ANSLAAVEAGATRI 214 (263)
T ss_pred CC---C--cCHHHHHHHHHHHHHhCCCceEEEEecCCcchHH-HHHHHHHHhCCCEE
Confidence 44 3 3577889999999998765 5543 233332 34556667899865
No 169
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=98.41 E-value=2.9e-05 Score=75.77 Aligned_cols=166 Identities=18% Similarity=0.327 Sum_probs=106.6
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhcc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKR 154 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~ 154 (311)
.++-+++++.|++.|+|.||+|+|.+.| . -++.++.+.+. .+..+..++-
T Consensus 21 ~~~k~~ia~~L~~~Gv~~IEvG~p~~~~---~-------------------~~e~i~~i~~~~~~~~v~~~~r------- 71 (363)
T TIGR02090 21 VEQKVEIARKLDELGVDVIEAGFPIASE---G-------------------EFEAIKKISQEGLNAEICSLAR------- 71 (363)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCh---H-------------------HHHHHHHHHhcCCCcEEEEEcc-------
Confidence 4678899999999999999999987643 1 13455565543 3444554432
Q ss_pred CHHHHHHHHHHcCCcEEEecC----C--------C----hhhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh--
Q 021527 155 GVDNFMSTVRDIGIRGLVVPD----V--------P----LEETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA-- 214 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipD----l--------p----~ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~-- 214 (311)
...+.++.+.++|++.+.+.. . . .+...+..+.++++|+++.+.. +..++.+.+.++++.
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~ 151 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAE 151 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHH
Confidence 236779999999999887732 1 1 1335567788899998754432 233445665555443
Q ss_pred --CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 215 --SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 215 --a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
...-+|+.... |. ..|..+.++++.+++..++|+-+ .+|... .+....+++|||.|
T Consensus 152 ~~g~~~i~l~DT~---G~--~~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~-AN~laA~~aGa~~v 213 (363)
T TIGR02090 152 EAGADRINIADTV---GV--LTPQKMEELIKKLKENVKLPISVHCHNDFGLAT-ANSIAGVKAGAEQV 213 (363)
T ss_pred hCCCCEEEEeCCC---Cc--cCHHHHHHHHHHHhcccCceEEEEecCCCChHH-HHHHHHHHCCCCEE
Confidence 22345665543 43 35778899999999877666544 344443 34556667898765
No 170
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=98.41 E-value=2.8e-05 Score=72.35 Aligned_cols=215 Identities=21% Similarity=0.346 Sum_probs=112.4
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH----HcCCCHHHHHHHHHHhhccC-CCcE
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL----ARGTNFNAILSMLKEVVPQM-SCPI 142 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al----~~G~~~~~~~~~i~~ir~~~-~iPi 142 (311)
-.-+|.. -.++..+++|+|.|-+ |..|.+=+ +-.-+| ..|-.-+-++++.++|-+.+ ++||
T Consensus 19 g~gaGtG------lsAk~ae~gGaDlI~~-------ynsGrfR~-~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPV 84 (268)
T PF09370_consen 19 GAGAGTG------LSAKCAEKGGADLILI-------YNSGRFRM-AGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPV 84 (268)
T ss_dssp EEEESSH------HHHHHHHHTT-SEEEE--------HHHHHHH-TT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-E
T ss_pred EEeeccc------hhhHHHHhcCCCEEEE-------ecchhHhh-CCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCE
Confidence 3455654 6778889999999998 22232211 000000 11111234567778887764 4998
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEe-cC----------------CChhhHHHHHHHHHHcCCCeEEEeCCCChH
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVV-PD----------------VPLEETESLQKEAMKNKIELVLFTTPTTPT 205 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGvii-pD----------------lp~ee~~~~~~~~~~~gi~~I~lisp~t~~ 205 (311)
+.-...++-+ ...++|++.+++.|..||.. |. +.++.-.++...+++.|+-.+.++- + +
T Consensus 85 iaGv~atDP~-~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf--~-~ 160 (268)
T PF09370_consen 85 IAGVCATDPF-RDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVF--N-E 160 (268)
T ss_dssp EEEE-TT-TT---HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE---S-H
T ss_pred EEEecCcCCC-CcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeec--C-H
Confidence 8876555444 35789999999999999876 32 1222234567788888886666664 2 3
Q ss_pred HHHHHHHHhCCceEEE-E--ecCCccCCCCCCC-chHHHHHHHHhh----cC-C-CcEEEeeCCCCHHHHHHHHHc--CC
Q 021527 206 DRMKAIVEASEGFVYL-V--SSIGVTGARASIS-GHVQTLLREIKE----SS-T-KPVAVGFGISKPEHVQQVAGW--GA 273 (311)
Q Consensus 206 eri~~i~~~a~gfiY~-v--s~~G~TG~~~~~~-~~~~~~l~~vk~----~~-~-~Pv~vGfGIst~e~v~~v~~~--GA 273 (311)
+..+.+++.....+.+ + +.-|..|.++..+ .+..+.++++.+ .. + +-++-|+-|++|+|++.+++. |+
T Consensus 161 e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~ 240 (268)
T PF09370_consen 161 EQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGI 240 (268)
T ss_dssp HHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTE
T ss_pred HHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCC
Confidence 4455565543333222 1 2223334433222 112233333333 22 2 346679999999999999865 46
Q ss_pred cEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 274 DGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 274 DGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
||++-||++.|.--| +.+.+.++++|.
T Consensus 241 ~Gf~G~Ss~ERlP~E--------~ai~~~~~~FK~ 267 (268)
T PF09370_consen 241 HGFIGASSMERLPVE--------RAITETVRAFKS 267 (268)
T ss_dssp EEEEESTTTTHHHHH--------HHHHHHHHHHHT
T ss_pred CEEecccchhhccHH--------HHHHHHHHHhhc
Confidence 999999999986533 355666666653
No 171
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=98.40 E-value=2.1e-05 Score=75.68 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=77.5
Q ss_pred HHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCC-----ccC
Q 021527 157 DNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG-----VTG 229 (311)
Q Consensus 157 ~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G-----~TG 229 (311)
.+.++.+.++|++.+.+. .-..+...++.+.+++.+-+....+....+.+..+...+ .|..+++...| .|.
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~--aGaD~I~vg~g~G~~~~t~ 173 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLID--AGADGVKVGIGPGSICTTR 173 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHh--cCCCEEEECCCCCcCcccc
Confidence 456778899999987652 112244556667777765222222222233455555544 34444431111 111
Q ss_pred CCCCCCchHHHHHHHHhhc---CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 230 ARASISGHVQTLLREIKES---STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~~---~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
...+........+.++.+. .++||+..+||.++.++.+.+..|||+|.+||.|....+.
T Consensus 174 ~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es 235 (325)
T cd00381 174 IVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDES 235 (325)
T ss_pred eeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccC
Confidence 1111111222344444443 3699999999999999999999999999999999987653
No 172
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.40 E-value=9.3e-06 Score=81.41 Aligned_cols=140 Identities=23% Similarity=0.235 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhccCH
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~g~ 156 (311)
...+-++.|.++|+|+|++. .++|. -....+.++++|++ .++||++-.-. .
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd------~a~g~---------------~~~~~~~i~~i~~~~~~~~vi~G~v~-------t 275 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVID------SSHGH---------------SIYVIDSIKEIKKTYPDLDIIAGNVA-------T 275 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEE------CCCCc---------------HhHHHHHHHHHHHhCCCCCEEEEeCC-------C
Confidence 56788899999999999997 33341 12456789999987 58998883221 1
Q ss_pred HHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCc
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISG 236 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~ 236 (311)
.+-++.+.++|+|++.+.=-| | -+ .+| |. ++|. +.|.
T Consensus 276 ~~~a~~l~~aGad~i~vg~g~--------------G--~~----~~t---~~------------------~~~~--g~p~ 312 (450)
T TIGR01302 276 AEQAKALIDAGADGLRVGIGP--------------G--SI----CTT---RI------------------VAGV--GVPQ 312 (450)
T ss_pred HHHHHHHHHhCCCEEEECCCC--------------C--cC----Ccc---ce------------------ecCC--CccH
Confidence 455677888999998653111 0 00 011 00 1111 1110
Q ss_pred -hHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 237 -HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 237 -~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
.....+.++.+..++||++.+||+++.++.+.+.+|||.|.+||.|....+.
T Consensus 313 ~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~ 365 (450)
T TIGR01302 313 ITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTES 365 (450)
T ss_pred HHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcC
Confidence 1111233323335799999999999999999999999999999999987653
No 173
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.40 E-value=1.3e-05 Score=77.03 Aligned_cols=170 Identities=16% Similarity=0.202 Sum_probs=107.0
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc--CCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG--VPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM 138 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG--~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~ 138 (311)
....++.=|...+| +.+.+.++.+++.|+|.|+|. =|...=.-+| +--+|- .+.+.+.++++.+++.+
T Consensus 53 ~e~p~~vQl~g~~p--~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g------~Gs~Ll--~~p~~~~~iv~av~~~~ 122 (318)
T TIGR00742 53 EESPVALQLGGSDP--NDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGN------FGACLM--GNADLVADCVKAMQEAV 122 (318)
T ss_pred CCCcEEEEEccCCH--HHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCC------eehHhh--cCHHHHHHHHHHHHHHh
Confidence 34567777776777 788899999999999999994 3332211111 000111 25667788999999888
Q ss_pred CCcEEEEe--cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 139 SCPIALFT--YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 139 ~iPiilm~--Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
++||.+-. .|+.. -..++..++.+.+.+.|++.|. +.+.|... +
T Consensus 123 ~~PVsvKiR~g~~~~------------------------~~~~~~~~~~~~l~~~G~~~it-vHgRt~~~---------q 168 (318)
T TIGR00742 123 NIPVTVKHRIGIDPL------------------------DSYEFLCDFVEIVSGKGCQNFI-VHARKAWL---------S 168 (318)
T ss_pred CCCeEEEEecCCCCc------------------------chHHHHHHHHHHHHHcCCCEEE-EeCCchhh---------c
Confidence 99988864 22110 0123344455555555655443 23333210 1
Q ss_pred ceEEEEecCCccCCCC-CCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGARA-SISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~-~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|.+|... ..++-..+.+.++++.. ++||+..+||.|++++.+.+. |+|||-||.++..
T Consensus 169 ---------g~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~ 228 (318)
T TIGR00742 169 ---------GLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYE 228 (318)
T ss_pred ---------CCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHh
Confidence 2222211 12222346688898876 899999999999999999996 8999999988765
No 174
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=98.40 E-value=2.8e-05 Score=72.94 Aligned_cols=175 Identities=17% Similarity=0.236 Sum_probs=106.7
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-C-CCcEEEEecCcch
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-M-SCPIALFTYYNPI 151 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~-~iPiilm~Y~n~i 151 (311)
.+.+...++++.|.++|+|.||+|+|++.|. | ++.++.+++. . +.++..+.-....
T Consensus 17 ~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~-~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (273)
T cd07941 17 FSVEDKLRIARKLDELGVDYIEGGWPGSNPK-D---------------------TEFFARAKKLKLKHAKLAAFGSTRRA 74 (273)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcCCHH-H---------------------HHHHHHHHHcCCCCcEEEEEeccccc
Confidence 4457889999999999999999999996641 1 2334444432 2 4555555422211
Q ss_pred -hccCHHHHHHHHHHcCCcEEEec----CC--------C----hhhHHHHHHHHHHcCCCeEEEe-----CCCChHHHHH
Q 021527 152 -LKRGVDNFMSTVRDIGIRGLVVP----DV--------P----LEETESLQKEAMKNKIELVLFT-----TPTTPTDRMK 209 (311)
Q Consensus 152 -~~~g~~~fi~~~~~aGadGviip----Dl--------p----~ee~~~~~~~~~~~gi~~I~li-----sp~t~~eri~ 209 (311)
.....++.++.+.++|++.+-+. |. . ++...+..+.++++|+...+.. ++.++.+...
T Consensus 75 ~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~ 154 (273)
T cd07941 75 GVKAEEDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYAL 154 (273)
T ss_pred CCCccchHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHH
Confidence 01112346778899999987763 21 1 1234667788899998754421 1233455544
Q ss_pred HHHH----hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 210 AIVE----ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 210 ~i~~----~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
++++ ....-+|+....| . ..|..+.++++.+|+..+ +|+-+ .+|... .+....+++|||.+
T Consensus 155 ~~~~~~~~~g~~~i~l~DT~G---~--~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~-An~laA~~aGa~~i 224 (273)
T cd07941 155 ATLKAAAEAGADWLVLCDTNG---G--TLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAV-ANSLAAVEAGATQV 224 (273)
T ss_pred HHHHHHHhCCCCEEEEecCCC---C--CCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHH-HHHHHHHHcCCCEE
Confidence 4433 2233466665444 3 357788999999998764 66655 345544 34455567899865
No 175
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=98.39 E-value=2.9e-05 Score=75.77 Aligned_cols=167 Identities=14% Similarity=0.216 Sum_probs=106.4
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~ 153 (311)
+.++-.++++.|.+.|+|.||+|+|...+ . -++.++++++. .+..+..++-
T Consensus 21 s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~---~-------------------~~e~i~~i~~~~~~~~i~~~~r------ 72 (365)
T TIGR02660 21 TAAEKLAIARALDEAGVDELEVGIPAMGE---E-------------------ERAVIRAIVALGLPARLMAWCR------ 72 (365)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCH---H-------------------HHHHHHHHHHcCCCcEEEEEcC------
Confidence 45788999999999999999999997431 1 13455666543 3333433331
Q ss_pred cCHHHHHHHHHHcCCcEEEecCCC----------------hhhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh-
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDVP----------------LEETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA- 214 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDlp----------------~ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~- 214 (311)
...+.++.+.++|++.+.+..-. ++...+..+.++++|+.+.+-. .+.++.+.+.++++.
T Consensus 73 -~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~ 151 (365)
T TIGR02660 73 -ARDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVA 151 (365)
T ss_pred -CCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHH
Confidence 23677889999999987774311 1224467788899998744332 233345555554443
Q ss_pred ---CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 215 ---SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 215 ---a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
....+++.... |. ..|..+.++++.+++..++|+-+ .+|...+ +....+++|||.|
T Consensus 152 ~~~Ga~~i~l~DT~---G~--~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~A-NalaA~~aGa~~v 214 (365)
T TIGR02660 152 AEAGADRFRFADTV---GI--LDPFSTYELVRALRQAVDLPLEMHAHNDLGMATA-NTLAAVRAGATHV 214 (365)
T ss_pred HHcCcCEEEEcccC---CC--CCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHH-HHHHHHHhCCCEE
Confidence 22345555544 43 35778899999999987777655 4555543 4455567999865
No 176
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=98.38 E-value=2.6e-05 Score=75.99 Aligned_cols=162 Identities=18% Similarity=0.252 Sum_probs=102.1
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE----------------c--CCCC-----------CCC-------
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL----------------G--VPYS-----------DPL------- 104 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl----------------G--~Pfs-----------DP~------- 104 (311)
+...+..|.. -|.+.+.+.++..+++|++.|-+ | +|+. +|.
T Consensus 110 ~~~~~Qly~~---~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~ 186 (356)
T PF01070_consen 110 GPLWFQLYPP---RDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLE 186 (356)
T ss_dssp SEEEEEEEGB---SSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG--
T ss_pred CCeEEEEEEe---cCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCccccccccc
Confidence 3344555553 56688999999999999999998 2 2332 121
Q ss_pred --------CChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCC
Q 021527 105 --------ADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDV 176 (311)
Q Consensus 105 --------aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDl 176 (311)
.++...+......+....++ +.++++++++++||++-+-.+ .+.++.+.+.|+||+++..-
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w----~~i~~~~~~~~~pvivKgv~~-------~~da~~~~~~G~~~i~vs~h 255 (356)
T PF01070_consen 187 NNEAPPPGDNGAAAARFVGSQFDPSLTW----DDIEWIRKQWKLPVIVKGVLS-------PEDAKRAVDAGVDGIDVSNH 255 (356)
T ss_dssp ---CSSSSTSTCHHHHHHHCHB-TT-SH----HHHHHHHHHCSSEEEEEEE-S-------HHHHHHHHHTT-SEEEEESG
T ss_pred ccccccCCCcchhHHHHHHHhcCCCCCH----HHHHHHhcccCCceEEEeccc-------HHHHHHHHhcCCCEEEecCC
Confidence 12222333222222233444 468888888999999976432 45677888888888877632
Q ss_pred ChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEE
Q 021527 177 PLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVA 254 (311)
Q Consensus 177 p~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~ 254 (311)
.-.. .... ++ ..+.|.++++.. ++||+
T Consensus 256 GGr~-------------------------------------------------~d~~-~~-~~~~L~~i~~~~~~~~~i~ 284 (356)
T PF01070_consen 256 GGRQ-------------------------------------------------LDWG-PP-TIDALPEIRAAVGDDIPII 284 (356)
T ss_dssp TGTS-------------------------------------------------STTS--B-HHHHHHHHHHHHTTSSEEE
T ss_pred Cccc-------------------------------------------------Cccc-cc-cccccHHHHhhhcCCeeEE
Confidence 2100 0001 11 224455555533 68999
Q ss_pred EeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 255 VGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 255 vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
+.+||++..|+.+.+-.|||.|-+|-.+...+.
T Consensus 285 ~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~ 317 (356)
T PF01070_consen 285 ADGGIRRGLDVAKALALGADAVGIGRPFLYALA 317 (356)
T ss_dssp EESS--SHHHHHHHHHTT-SEEEESHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHH
Confidence 999999999999999999999999999999884
No 177
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=98.38 E-value=2e-05 Score=73.72 Aligned_cols=167 Identities=16% Similarity=0.178 Sum_probs=102.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~ 153 (311)
+.++-+++++.|.++|+|.||+|.|-..| .. .+.++.+++. .+..+..+.-
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~-----~~-----------------~~~~~~l~~~~~~~~v~~~~r------ 71 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELTSPAASP-----QS-----------------RADCEAIAKLGLKAKILTHIR------ 71 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCH-----HH-----------------HHHHHHHHhCCCCCcEEEEec------
Confidence 35778999999999999999999875443 11 1233333221 2223333222
Q ss_pred cCHHHHHHHHHHcCCcEEEec------------CCChhh----HHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh-
Q 021527 154 RGVDNFMSTVRDIGIRGLVVP------------DVPLEE----TESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA- 214 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviip------------Dlp~ee----~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~- 214 (311)
...+-++.+.++|++.+.+. ....+| ..+..+.+++.|+.+.+.+ +-.++.+++.++.+.
T Consensus 72 -~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~ 150 (262)
T cd07948 72 -CHMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAV 150 (262)
T ss_pred -CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHH
Confidence 22457888999999987773 122233 4556678889998755543 223445555544443
Q ss_pred ---CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 215 ---SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 215 ---a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
...-+++....| . ..|..+.++++.+|+..++|+-+ .+|... .+....+++|+|-|
T Consensus 151 ~~~g~~~i~l~Dt~G---~--~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~-an~~~a~~aG~~~v 213 (262)
T cd07948 151 DKLGVNRVGIADTVG---I--ATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAI-ANAYAALEAGATHI 213 (262)
T ss_pred HHcCCCEEEECCcCC---C--CCHHHHHHHHHHHHHhcCCeEEEEECCCCChHH-HHHHHHHHhCCCEE
Confidence 223356555444 3 35678899999999987777755 345543 44556667999854
No 178
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=98.37 E-value=9.6e-05 Score=69.39 Aligned_cols=199 Identities=20% Similarity=0.332 Sum_probs=125.9
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
|...|++.-++|+..+-.++..+.| ..++.+..+|.|++.|+...+- .+.+++.+
T Consensus 5 ~~n~lk~~L~~G~~~~G~~~~~~sp------~~~E~~a~~GfD~v~iD~EHg~-------------------~~~~~l~~ 59 (267)
T PRK10128 5 LSNPFKEGLRKGEVQIGLWLSSTTS------YMAEIAATSGYDWLLIDGEHAP-------------------NTIQDLYH 59 (267)
T ss_pred cchHHHHHHHcCCceEEEEecCCCc------HHHHHHHHcCCCEEEEccccCC-------------------CCHHHHHH
Confidence 3444555555688888888988888 6777778899999999865531 45556666
Q ss_pred HHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHH-------------------
Q 021527 130 MLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAM------------------- 189 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~------------------- 189 (311)
++..++. ..++.++-.-+| -..+++++.+.|++||++|.+- .||++++++.++
T Consensus 60 ~i~a~~~-~g~~~lVRvp~~------~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~y 132 (267)
T PRK10128 60 QLQAIAP-YASQPVIRPVEG------SKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARW 132 (267)
T ss_pred HHHHHHh-cCCCeEEECCCC------CHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhcc
Confidence 7766664 334444433222 2457889999999999999764 345555555442
Q ss_pred --------HcCCCeEEEeCCCChH--HHHHHHHHhCCce--EEEE-----ecCCccCCCCCCCchHHHHHHHHhhcC---
Q 021527 190 --------KNKIELVLFTTPTTPT--DRMKAIVEASEGF--VYLV-----SSIGVTGARASISGHVQTLLREIKESS--- 249 (311)
Q Consensus 190 --------~~gi~~I~lisp~t~~--eri~~i~~~a~gf--iY~v-----s~~G~TG~~~~~~~~~~~~l~~vk~~~--- 249 (311)
..+=+.+.++.-.|++ +.+++|++. +|. +++. ...|..|.. ..+++.+.++++.+.+
T Consensus 133 g~~~~y~~~an~~~~vi~qiEt~~a~~n~~~I~~~-~gvd~i~~G~~Dls~slg~~~~~--~~pev~~ai~~v~~a~~~~ 209 (267)
T PRK10128 133 GRIENYMAQANDSLCLLVQVESKTALDNLDEILDV-EGIDGVFIGPADLSASLGYPDNA--GHPEVQRIIETSIRRIRAA 209 (267)
T ss_pred CChHHHHHHhccccEEEEEECCHHHHHhHHHHhCC-CCCCEEEECHHHHHHHcCCCCCC--CCHHHHHHHHHHHHHHHHc
Confidence 0011112222223433 567777664 444 4442 234544432 3566777788776654
Q ss_pred CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 250 TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 250 ~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
++| +|+-..+++++++..+.|++-+.+|+-..-.
T Consensus 210 Gk~--~G~~~~~~~~a~~~~~~G~~~v~~g~D~~~l 243 (267)
T PRK10128 210 GKA--AGFLAVDPDMAQKCLAWGANFVAVGVDTMLY 243 (267)
T ss_pred CCe--EEEcCCCHHHHHHHHHcCCcEEEEChHHHHH
Confidence 455 4666678999999999999999999866443
No 179
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=98.34 E-value=4.4e-05 Score=70.95 Aligned_cols=167 Identities=14% Similarity=0.228 Sum_probs=103.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~ 153 (311)
+.+...++++.|.++|+|.||+|+|...+ -+ .+.++++++. .+..+..++-.|
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~---~~-------------------~e~~~~l~~~~~~~~~~~~~r~~---- 71 (259)
T cd07939 18 SREEKLAIARALDEAGVDEIEVGIPAMGE---EE-------------------REAIRAIVALGLPARLIVWCRAV---- 71 (259)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCH---HH-------------------HHHHHHHHhcCCCCEEEEeccCC----
Confidence 45788999999999999999999986421 10 2344455442 344444443222
Q ss_pred cCHHHHHHHHHHcCCcEEEecC----C--------C----hhhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh-
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPD----V--------P----LEETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA- 214 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipD----l--------p----~ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~- 214 (311)
.+.++.+.++|++.+-+.. . . ++...+..+.+++.|+++.+.+ ...++.+.+.++++.
T Consensus 72 ---~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~ 148 (259)
T cd07939 72 ---KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVA 148 (259)
T ss_pred ---HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHH
Confidence 5667888999999776632 1 1 1234567788899998755433 222334554444443
Q ss_pred ---CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 215 ---SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 215 ---a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
...-+|+....| . ..|.++.++++.+|+..++|+-+ .+|... .+....+++|+|.|
T Consensus 149 ~~~G~~~i~l~DT~G---~--~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~-An~laAi~aG~~~v 211 (259)
T cd07939 149 QEAGADRLRFADTVG---I--LDPFTTYELIRRLRAATDLPLEFHAHNDLGLAT-ANTLAAVRAGATHV 211 (259)
T ss_pred HHCCCCEEEeCCCCC---C--CCHHHHHHHHHHHHHhcCCeEEEEecCCCChHH-HHHHHHHHhCCCEE
Confidence 233467765444 3 35778999999999887666544 334433 34556678998865
No 180
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=98.34 E-value=3.7e-05 Score=74.43 Aligned_cols=182 Identities=18% Similarity=0.224 Sum_probs=107.9
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchh
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPIL 152 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~ 152 (311)
-+.+...++++.|+++|+|.||+|.+- .+ .|.. ...|.....-.+.++.+++. .+.++..|.-..
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~--g~-g~~s--------~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg--- 87 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGD--GL-GGSS--------FNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPG--- 87 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCC--CC-CCcc--------ccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccC---
Confidence 445788999999999999999997421 10 0000 00111100012344555432 345666553211
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCC--hhhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh----CCceEEEEec
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVP--LEETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA----SEGFVYLVSS 224 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp--~ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~----a~gfiY~vs~ 224 (311)
.+..+.++.+.++|+|.+-+.+-- .+...+..+.+++.|++....+ ++..+++.+.++++. ....+|++..
T Consensus 88 -~~~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT 166 (337)
T PRK08195 88 -IGTVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDS 166 (337)
T ss_pred -cccHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 233567899999999997765321 2346778888999999766543 444455554444443 3345777765
Q ss_pred CCccCCCCCCCchHHHHHHHHhhcC--CCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 225 IGVTGARASISGHVQTLLREIKESS--TKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 225 ~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
.| . -.|.++.++++.+|+.. ++|+-+ .+|... .+....+++|||.|
T Consensus 167 ~G---~--~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~-ANslaAi~aGa~~i 218 (337)
T PRK08195 167 AG---A--LLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGV-ANSLAAVEAGATRI 218 (337)
T ss_pred CC---C--CCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHH-HHHHHHHHhCCCEE
Confidence 54 2 35778999999999987 455433 223332 34556678999843
No 181
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=98.34 E-value=6.3e-05 Score=72.72 Aligned_cols=183 Identities=20% Similarity=0.233 Sum_probs=108.5
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchh
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPIL 152 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~ 152 (311)
-+.+...++++.|+++|+|.||+|.+- -+. |. ....|.....-++.++++++. .+..+..|....
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~--gl~-g~--------s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg--- 86 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGD--GLG-GS--------SFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPG--- 86 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC--CCC-Cc--------cccCCCCCCChHHHHHHHHHhCCCCEEEEEeccC---
Confidence 345788999999999999999997321 000 00 000111100112344444433 235555443211
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCC--hhhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh----CCceEEEEec
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVP--LEETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA----SEGFVYLVSS 224 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp--~ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~----a~gfiY~vs~ 224 (311)
.+..+.++.+.++|+|.+-+..-- .+...+..+.+++.|++....+ +..++++.+.++++. ....+|++..
T Consensus 87 -~~~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT 165 (333)
T TIGR03217 87 -IGTVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDS 165 (333)
T ss_pred -ccCHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccC
Confidence 234678999999999998875322 2346778888999999866443 444555555444443 3345777765
Q ss_pred CCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCC-----HHHHHHHHHcCCcEE
Q 021527 225 IGVTGARASISGHVQTLLREIKESSTKPVAVGFGISK-----PEHVQQVAGWGADGV 276 (311)
Q Consensus 225 ~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst-----~e~v~~v~~~GADGv 276 (311)
.|. -.|.++.++++.+|+..+..+-+||-.++ -.+.....++|||-+
T Consensus 166 ~G~-----~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~i 217 (333)
T TIGR03217 166 AGA-----MLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRI 217 (333)
T ss_pred CCC-----CCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEE
Confidence 542 35778999999999987522344543322 134456668998864
No 182
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=98.34 E-value=0.00025 Score=67.51 Aligned_cols=207 Identities=17% Similarity=0.272 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++++ .++..|= ..+++...-++++.++.+..+|---.|-...+..| .+.+.
T Consensus 5 ~~~~~l~~A~~~~-yav~AfN---~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~----------------~~~~~ 64 (293)
T PRK07315 5 SAEKFVQAARDNG-YAVGGFN---TNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGG----------------YKVCK 64 (293)
T ss_pred cHHHHHHHHHHCC-ceEEEEE---ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCc----------------HHHHH
Confidence 3567777766554 4555554 34788889999999999999876543322222121 23345
Q ss_pred HHHHHhhccC--CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE---
Q 021527 129 SMLKEVVPQM--SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL--- 197 (311)
Q Consensus 129 ~~i~~ir~~~--~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~--- 197 (311)
.+++.+.++. ++||.+-. + + |..+.++++.+.|++.|.+ .++|+|| ..++++.++++|+.+-.
T Consensus 65 ~~~~~~a~~~~~~vPV~lHL--D---H-~~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG 138 (293)
T PRK07315 65 NLIENLVESMGITVPVAIHL--D---H-GHYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVG 138 (293)
T ss_pred HHHHHHHHHcCCCCcEEEEC--C---C-CCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 5677766666 78999853 2 2 3346889999999999988 4788876 66788888888764321
Q ss_pred ----------EeCCCChHHHHHHHHHhCCceEEEEecCCcc-CCC-CCCCchHHHHHHHHhhcC-CCcEEEee--CCCCH
Q 021527 198 ----------FTTPTTPTDRMKAIVEASEGFVYLVSSIGVT-GAR-ASISGHVQTLLREIKESS-TKPVAVGF--GISKP 262 (311)
Q Consensus 198 ----------lisp~t~~eri~~i~~~a~gfiY~vs~~G~T-G~~-~~~~~~~~~~l~~vk~~~-~~Pv~vGf--GIst~ 262 (311)
..+.-|+++...+.. ..|..|+.-..|.. |.- +..+.--.+.|+++++.+ ++|++.=+ ||+ .
T Consensus 139 ~i~g~ed~~~g~s~~t~peea~~f~--~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~-~ 215 (293)
T PRK07315 139 TIGGEEDGIIGKGELAPIEDAKAMV--ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIP-D 215 (293)
T ss_pred cccCcCccccCccCCCCHHHHHHHH--HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCC-H
Confidence 112213445555554 36777874333311 111 111112246799999988 59986633 475 7
Q ss_pred HHHHHHHHcCCcEEEEhhHhhc
Q 021527 263 EHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 263 e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|+++++.+.|+++|-|+|.+..
T Consensus 216 e~~~~~i~~Gi~KiNv~T~i~~ 237 (293)
T PRK07315 216 DQIQEAIKLGVAKVNVNTECQI 237 (293)
T ss_pred HHHHHHHHcCCCEEEEccHHHH
Confidence 9999999999999999999974
No 183
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=98.31 E-value=0.00056 Score=64.75 Aligned_cols=206 Identities=20% Similarity=0.277 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++++ -++..|= -.+++...-++++.++.++.+|--..|..-.+ ...+.+.
T Consensus 5 ~~k~ll~~A~~~~-yaV~AfN---~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~-----------------~g~~~~~ 63 (283)
T PRK07998 5 NGRILLDRIQEKH-VLAGAFN---TTNLETTISILNAIERSGLPNFIQIAPTNAQL-----------------SGYDYIY 63 (283)
T ss_pred cHHHHHHHHHHCC-CEEEEEe---eCCHHHHHHHHHHHHHhCCCEEEECcHhHHhh-----------------CCHHHHH
Confidence 3566777766554 4555554 34778888999999999999886643321111 2244456
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCe-EE--Ee
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIEL-VL--FT 199 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~-I~--li 199 (311)
.+++...++.++||.+.. + +.-..+.++.|.++|.+.|.+ ..+|+|| ..++.+.++.+|+.+ .- .+
T Consensus 64 ~~~~~~A~~~~vPV~lHL--D---H~~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~v 138 (283)
T PRK07998 64 EIVKRHADKMDVPVSLHL--D---HGKTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAI 138 (283)
T ss_pred HHHHHHHHHCCCCEEEEC--c---CCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccC
Confidence 678888888899999853 2 222246788899999999999 5688875 667889999999753 11 11
Q ss_pred -C----------CCChHHHHHHHHHhCCceEEE----EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCCCH
Q 021527 200 -T----------PTTPTDRMKAIVEASEGFVYL----VSSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGISKP 262 (311)
Q Consensus 200 -s----------p~t~~eri~~i~~~a~gfiY~----vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIst~ 262 (311)
. .-|.++...+..+.. |...+ .+..|..- + |.-..+.++++++.+++|++. |.|+. .
T Consensus 139 gg~ed~~~~~~~~~T~pe~a~~Fv~~T-gvD~LAvaiGt~HG~Y~---~-p~l~~~~l~~I~~~~~vPLVlHGgSG~~-~ 212 (283)
T PRK07998 139 LGKEDDHVSEADCKTEPEKVKDFVERT-GCDMLAVSIGNVHGLED---I-PRIDIPLLKRIAEVSPVPLVIHGGSGIP-P 212 (283)
T ss_pred CCccccccccccccCCHHHHHHHHHHh-CcCeeehhccccccCCC---C-CCcCHHHHHHHHhhCCCCEEEeCCCCCC-H
Confidence 1 123445555555533 33333 23344321 1 211247899999989999876 66775 5
Q ss_pred HHHHHHHHcCCcEEEEhhHhhchh
Q 021527 263 EHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 263 e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
|++++..+.|+-.+=|||.+....
T Consensus 213 e~~~~ai~~Gi~KiNi~Tel~~a~ 236 (283)
T PRK07998 213 EILRSFVNYKVAKVNIASDLRKAF 236 (283)
T ss_pred HHHHHHHHcCCcEEEECHHHHHHH
Confidence 999999999999999999987644
No 184
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=98.29 E-value=2.1e-05 Score=75.28 Aligned_cols=179 Identities=20% Similarity=0.269 Sum_probs=106.3
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
|..||+.+...+ ++..+|++++=+-+=--|-.. ...+++++.+..- + +.++ -|
T Consensus 90 tg~y~s~~~~~~---a~~asg~e~vTva~rr~~~~~----------------~~~~~~~~~~~~~----~--~~~l--pN 142 (326)
T PRK11840 90 TGKYKDFEETAA---AVEASGAEIVTVAVRRVNVSD----------------PGAPMLTDYIDPK----K--YTYL--PN 142 (326)
T ss_pred cCCCCCHHHHHH---HHHHhCCCEEEEEEEeecCcC----------------CCcchHHHhhhhc----C--CEEC--cc
Confidence 666777665554 455689999977422211000 0112344444321 2 2332 25
Q ss_pred chhccCHHHHHH---HHHHcCCcEE----EecC--CChhhHHHHHHHHHHc---CCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 150 PILKRGVDNFMS---TVRDIGIRGL----VVPD--VPLEETESLQKEAMKN---KIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 150 ~i~~~g~~~fi~---~~~~aGadGv----iipD--lp~ee~~~~~~~~~~~---gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
+--.+..++-++ .+.+++-.-+ +++| ....+..+..+.++.. |+...++++++. .-.+++++. |
T Consensus 143 Tag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~--~~a~~l~~~--g 218 (326)
T PRK11840 143 TAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDP--IAAKRLEDA--G 218 (326)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHhc--C
Confidence 544555555443 4556543322 2343 2223445566666666 999878888763 333344443 4
Q ss_pred eEEEEe---cCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 218 FVYLVS---SIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs---~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+-++. ..| ||. ++. -.+.|+.+.+..++||++|-||.+++|+.+..+.|||||-+-|++.+
T Consensus 219 ~~avmPl~~pIG-sg~--gv~--~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~ 283 (326)
T PRK11840 219 AVAVMPLGAPIG-SGL--GIQ--NPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAE 283 (326)
T ss_pred CEEEeecccccc-CCC--CCC--CHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceecc
Confidence 444432 333 443 343 23678888777889999999999999999999999999999999986
No 185
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=98.28 E-value=8.9e-06 Score=78.69 Aligned_cols=161 Identities=14% Similarity=0.181 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHhhccCCCcEEE--Ee----cCc--chh--ccCHHHHHHHHHH-cCCcEEEecCCChhhHHHHHHHHHH
Q 021527 122 TNFNAILSMLKEVVPQMSCPIAL--FT----YYN--PIL--KRGVDNFMSTVRD-IGIRGLVVPDVPLEETESLQKEAMK 190 (311)
Q Consensus 122 ~~~~~~~~~i~~ir~~~~iPiil--m~----Y~n--~i~--~~g~~~fi~~~~~-aGadGviipDlp~ee~~~~~~~~~~ 190 (311)
...+++-++++++++.+..|... ++ +.| .+. ..+.++..+.+.+ .|+--+... +. +-..++.+.++.
T Consensus 48 ~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~~~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~-~g-~~~~~~i~~~~~ 125 (336)
T COG2070 48 LPAEQLRAEIRKIRALTDKPFVANNFGSAPAPVNVNILVARRNAAEAGVDAIIEGAGVPVVSTS-FG-APPAEFVARLKA 125 (336)
T ss_pred CCHHHHHHHHHHHHHhcCCcchhcccccccccchhheecccccchHHhhhhHHhcCCCCEEecc-CC-CCcHHHHHHHHH
Confidence 34456667888888877777321 11 112 111 1344555554433 366555443 11 013446677788
Q ss_pred cCCCeEEEeCCCChHHHHHHHHHhCCceEEEE-e-cCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCCHHHHHH
Q 021527 191 NKIELVLFTTPTTPTDRMKAIVEASEGFVYLV-S-SIGVTGARASISGHVQTLLREIKESST-KPVAVGFGISKPEHVQQ 267 (311)
Q Consensus 191 ~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s-~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst~e~v~~ 267 (311)
+|+.++..+. +. ...++..+.....+-++ . .-|-+|. ...+.....++.++++..+ +||++.+||.+.+++..
T Consensus 126 ~g~~v~~~v~--~~-~~A~~~~~~G~d~vI~~g~eAGGH~g~-~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~A 201 (336)
T COG2070 126 AGIKVIHSVI--TV-REALKAERAGADAVIAQGAEAGGHRGG-VDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAA 201 (336)
T ss_pred cCCeEEEEeC--CH-HHHHHHHhCCCCEEEecCCcCCCcCCC-CCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHH
Confidence 8987665543 32 33333334333333333 2 1123332 1225567889999999998 89999999999999999
Q ss_pred HHHcCCcEEEEhhHhhchhhh
Q 021527 268 VAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 268 v~~~GADGvIVGSaiv~~~~~ 288 (311)
.+.+|||||.+||.|.-..|.
T Consensus 202 AlalGA~gVq~GT~Fl~t~Ea 222 (336)
T COG2070 202 ALALGADGVQMGTRFLATKEA 222 (336)
T ss_pred HHHhccHHHHhhhhhhccccc
Confidence 999999999999999987753
No 186
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=98.26 E-value=0.0001 Score=68.78 Aligned_cols=167 Identities=18% Similarity=0.255 Sum_probs=104.1
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~ 153 (311)
+.+..+++++.|.++|+|.||+|+|...|- + ++.++.+++. .+.++..+.-.|
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~---~-------------------~~~~~~l~~~~~~~~~~~l~r~~---- 71 (268)
T cd07940 18 TPEEKLEIARQLDELGVDVIEAGFPAASPG---D-------------------FEAVKRIAREVLNAEICGLARAV---- 71 (268)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCHH---H-------------------HHHHHHHHHhCCCCEEEEEccCC----
Confidence 457889999999999999999998764331 0 1344555442 356666654222
Q ss_pred cCHHHHHHHHHHcC----CcEEEecCC------------C----hhhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHH
Q 021527 154 RGVDNFMSTVRDIG----IRGLVVPDV------------P----LEETESLQKEAMKNKIELVLFT--TPTTPTDRMKAI 211 (311)
Q Consensus 154 ~g~~~fi~~~~~aG----adGviipDl------------p----~ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i 211 (311)
.+.++.+.++| ++.+-+.+- . ++...+..+.+++.|++..+.. ++.++.+...++
T Consensus 72 ---~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~ 148 (268)
T cd07940 72 ---KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEV 148 (268)
T ss_pred ---HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHH
Confidence 56788888888 888777431 1 2345567888899998755432 222345554444
Q ss_pred HHh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC---CcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 212 VEA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESST---KPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 212 ~~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~---~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
++. ...-+|+....| . ..|.++.++++.+|+..+ +|+-+ .+|... .+....+++|+|-|
T Consensus 149 ~~~~~~~G~~~i~l~DT~G---~--~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~-An~laAi~aG~~~i 218 (268)
T cd07940 149 VEAAIEAGATTINIPDTVG---Y--LTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAV-ANSLAAVEAGARQV 218 (268)
T ss_pred HHHHHHcCCCEEEECCCCC---C--CCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHH-HHHHHHHHhCCCEE
Confidence 433 233466665444 3 357789999999999764 45433 233332 34556667898755
No 187
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=98.25 E-value=2.8e-05 Score=74.35 Aligned_cols=157 Identities=25% Similarity=0.338 Sum_probs=94.0
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcC------CCHHHHHHHHHH
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARG------TNFNAILSMLKE 133 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G------~~~~~~~~~i~~ 133 (311)
...+++=|...+| +.+.+.++.+.+.|+|.|.| |=|. .++.+.| .+.+.+.++++.
T Consensus 53 ~~p~~~Ql~g~~~--~~~~~aa~~~~~~~~~~IDlN~GCP~--------------~~v~~~g~Ga~Ll~~p~~~~~iv~~ 116 (309)
T PF01207_consen 53 ERPLIVQLFGNDP--EDLAEAAEIVAELGFDGIDLNMGCPA--------------PKVTKGGAGAALLKDPDLLAEIVKA 116 (309)
T ss_dssp T-TEEEEEE-S-H--HHHHHHHHHHCCTT-SEEEEEE---S--------------HHHHHCT-GGGGGC-HHHHHHHHHH
T ss_pred ccceeEEEeeccH--HHHHHHHHhhhccCCcEEeccCCCCH--------------HHHhcCCcChhhhcChHHhhHHHHh
Confidence 3468887777777 88899999998889999999 4444 1122233 377888899999
Q ss_pred hhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHH
Q 021527 134 VVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVE 213 (311)
Q Consensus 134 ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~ 213 (311)
+++.+++||-+-.-. |. + -..++..++.+.+.+.|++.|. +.+.|..++
T Consensus 117 ~~~~~~~pvsvKiR~------g~------------~------~~~~~~~~~~~~l~~~G~~~i~-vH~Rt~~q~------ 165 (309)
T PF01207_consen 117 VRKAVPIPVSVKIRL------GW------------D------DSPEETIEFARILEDAGVSAIT-VHGRTRKQR------ 165 (309)
T ss_dssp HHHH-SSEEEEEEES------EC------------T--------CHHHHHHHHHHHHTT--EEE-EECS-TTCC------
T ss_pred hhcccccceEEeccc------cc------------c------cchhHHHHHHHHhhhcccceEE-EecCchhhc------
Confidence 999889998775421 11 1 0123334444444444443332 223332111
Q ss_pred hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhc
Q 021527 214 ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVK 284 (311)
Q Consensus 214 ~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~ 284 (311)
..| + ...+.++++++.+++||++.+||.|++++.++++. |+|||.||-+.+.
T Consensus 166 -------------~~~-----~-a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~ 218 (309)
T PF01207_consen 166 -------------YKG-----P-ADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALG 218 (309)
T ss_dssp -------------CTS---------HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC
T ss_pred -------------CCc-----c-cchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhh
Confidence 111 1 12467999999999999999999999999999987 9999999977654
No 188
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=98.25 E-value=0.0001 Score=72.36 Aligned_cols=166 Identities=19% Similarity=0.242 Sum_probs=104.7
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhcc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKR 154 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~~ 154 (311)
.+.-.++++.|.+.|+|.||+|+|...| .+ ++.++.+++. .+..+..++ .
T Consensus 25 ~e~k~~ia~~L~~~GV~~IE~G~p~~~~---~~-------------------~e~i~~i~~~~~~~~i~~~~-------r 75 (378)
T PRK11858 25 NEEKLAIARMLDEIGVDQIEAGFPAVSE---DE-------------------KEAIKAIAKLGLNASILALN-------R 75 (378)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCcCh---HH-------------------HHHHHHHHhcCCCeEEEEEc-------c
Confidence 4678999999999999999999998532 21 2345555432 232233322 1
Q ss_pred CHHHHHHHHHHcCCcEEEecC----C--------Ch----hhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh--
Q 021527 155 GVDNFMSTVRDIGIRGLVVPD----V--------PL----EETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA-- 214 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipD----l--------p~----ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~-- 214 (311)
...+.++.+.++|++.+.+.. . .. +...+..+.+++.|+.+.+.. ...++.+.+.++++.
T Consensus 76 ~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~ 155 (378)
T PRK11858 76 AVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAE 155 (378)
T ss_pred cCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHH
Confidence 235678899999999877742 1 11 234557778899998755432 223445555555443
Q ss_pred --CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 215 --SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 215 --a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
...-+|+....| . ..|..+.++++.+++.+++|+-+ .+|...+ +....+++||+.|
T Consensus 156 ~~Ga~~I~l~DT~G---~--~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~A-N~laAv~aGa~~v 217 (378)
T PRK11858 156 EAGADRVRFCDTVG---I--LDPFTMYELVKELVEAVDIPIEVHCHNDFGMATA-NALAGIEAGAKQV 217 (378)
T ss_pred hCCCCEEEEeccCC---C--CCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHH-HHHHHHHcCCCEE
Confidence 223456655444 3 35778899999999887777655 4455543 4445567999876
No 189
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.24 E-value=6.4e-05 Score=74.57 Aligned_cols=160 Identities=13% Similarity=0.168 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHhhcc-C-CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecC---CChhhHHHHHHHHHHcCCC-
Q 021527 121 GTNFNAILSMLKEVVPQ-M-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPD---VPLEETESLQKEAMKNKIE- 194 (311)
Q Consensus 121 G~~~~~~~~~i~~ir~~-~-~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipD---lp~ee~~~~~~~~~~~gi~- 194 (311)
|.+.+++-+.|+++|+. + +.|+.+....++-...-.++.++.+.+.|+.-+.... +++. . ...+.+|+.
T Consensus 47 ~l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~-~----~~~r~~G~~~ 121 (418)
T cd04742 47 GLPLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPELEEGLVDLFLRHGVRVVEASAFMQLTPA-L----VRYRAKGLRR 121 (418)
T ss_pred CCCHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchhHHHHHHHHHHcCCCEEEeccccCCCcc-h----hhHHhcCCcc
Confidence 35667777889999886 4 7898885443322111124578888889998766543 2221 1 133445543
Q ss_pred -----------eEEEeC----------CCChHHHHHHHHHhC---------------CceEEEEec-CCccCCCCCCCch
Q 021527 195 -----------LVLFTT----------PTTPTDRMKAIVEAS---------------EGFVYLVSS-IGVTGARASISGH 237 (311)
Q Consensus 195 -----------~I~lis----------p~t~~eri~~i~~~a---------------~gfiY~vs~-~G~TG~~~~~~~~ 237 (311)
++.-++ |- |++-++++.+.. .+.|.+..- -|.||... ...
T Consensus 122 ~~~g~~~~~~~ViakVsr~evAs~~f~pp-p~~~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq~EAGGH~g~~~--~~~ 198 (418)
T cd04742 122 DADGRVQIANRIIAKVSRPEVAEAFMSPA-PERILKKLLAEGKITEEQAELARRVPVADDITVEADSGGHTDNRP--LSV 198 (418)
T ss_pred cccccccccceEEEecCChhhhhhhcCCC-CHHHHHHHHHcCCCCHHHHHHHHhCCCCCEEEEcccCCCCCCCcc--HHh
Confidence 222221 11 122233332221 234443321 13343321 123
Q ss_pred HHHHHHHHhhcC--------CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 238 VQTLLREIKESS--------TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 238 ~~~~l~~vk~~~--------~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
+...+.+++... ++||++.+||.|++.+..++.+|||||.+||.|.-..|.
T Consensus 199 Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea 257 (418)
T cd04742 199 LLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVEA 257 (418)
T ss_pred HHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCccc
Confidence 444455555433 589999999999999999999999999999999987764
No 190
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=98.24 E-value=1.4e-05 Score=72.97 Aligned_cols=200 Identities=16% Similarity=0.120 Sum_probs=114.3
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNP 150 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~ 150 (311)
..|+.++..++++.|.. .+|++|+|.|. + +..| ++.++++++.. +.+|++..-+.+
T Consensus 11 D~~~~~~A~~l~~~l~~-~v~~iKVG~~L---------~-------~~~G------~~~i~~lk~~~~~~~IflDlKl~D 67 (218)
T PRK13305 11 DHTSLEAAQRDVTLLKD-HVDIVEAGTIL---------C-------LNEG------LGAVKALREQCPDKIIVADWKVAD 67 (218)
T ss_pred CCCCHHHHHHHHHHccc-cCCEEEECHHH---------H-------HHhC------HHHHHHHHHhCCCCEEEEEeeccc
Confidence 78999999999999875 68999999554 1 1223 45788888763 567887764443
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecCCCh-hhHHHHHHHHHHcCCC-eEEEeCCCChHHHHHHHHHhCCceEEEEecCCcc
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPDVPL-EETESLQKEAMKNKIE-LVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipDlp~-ee~~~~~~~~~~~gi~-~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~T 228 (311)
+-. -..+.+.+.|+|-+.+.-... +-.....+.++++|-+ .+-++.-+|. ++.+++.+ .|+.+++-..+..
T Consensus 68 Ip~----tv~~~~~~~Gad~~tv~~~~g~~~i~~a~~~a~~~~~~~~~~llgV~t~-~~~~~l~~--~g~~~~v~h~a~~ 140 (218)
T PRK13305 68 AGE----TLAQQAFGAGANWMTIICAAPLATVEKGHAVAQRCGGEIQIELFGNWTL-DDARDWHR--IGVRQAIYHRGRD 140 (218)
T ss_pred ChH----HHHHHHHHcCCCEEEEecCCCHHHHHHHHHHHHhcCCcccceEEEecCc-chHHHHHH--cCCHHHHHHHHHH
Confidence 321 233456789998655543332 3344455544554432 1122222232 33333433 2322222121211
Q ss_pred CCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHH
Q 021527 229 GARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 306 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l 306 (311)
....+.--+. ..+..+|+.. +.++.|-.||+ ++.....-+.+.|-+|||.+|++. .+| .+.++++.+++
T Consensus 141 a~~~G~v~s~-~e~~~ir~~~~~~~~i~VtpGIr-~~~~~~~dq~rvd~iVVGR~It~A----~dP---~~aa~~i~~~i 211 (218)
T PRK13305 141 AQASGQQWGE-ADLARMKALSDIGLELSITGGIT-PADLPLFKDIRVKAFIAGRALAGA----ANP---AQVAADFHAQI 211 (218)
T ss_pred HHHhCCCCCH-HHHHHHHHHhCCCCcEEEeCCcC-ccccccccccCCCEEEECCcccCC----CCH---HHHHHHHHHHH
Confidence 1111111111 2356666654 46699999997 677777777889999999999983 234 34555555666
Q ss_pred HhhC
Q 021527 307 KSAL 310 (311)
Q Consensus 307 ~~~~ 310 (311)
++.+
T Consensus 212 ~~~~ 215 (218)
T PRK13305 212 DAIW 215 (218)
T ss_pred HHhh
Confidence 5443
No 191
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.21 E-value=7.4e-06 Score=75.07 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.|.+.++.+.+. -..+|+++..|.- .+.++ ..++++++.+.+++|+.+|+||++.|+++++++.|+|+|||||+.
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga~---~g~~~-n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa 105 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGAF---EGKPK-NLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKA 105 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcchh---cCCcc-hHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchh
Confidence 455666666665 4556778776642 12222 246788888888999999999999999999999999999999997
Q ss_pred h
Q 021527 283 V 283 (311)
Q Consensus 283 v 283 (311)
+
T Consensus 106 ~ 106 (228)
T PRK04128 106 F 106 (228)
T ss_pred c
Confidence 7
No 192
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.19 E-value=3.3e-05 Score=70.74 Aligned_cols=184 Identities=20% Similarity=0.247 Sum_probs=97.8
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
|..||+.+...+. +..+|++++=+-+==-++-.. -..++ +++.++ ..++.+.- |
T Consensus 15 Tgky~s~~~m~~a---i~aSg~evvTvalRR~~~~~~---------------~~~~~---~~~~i~-~~~~~lLP----N 68 (247)
T PF05690_consen 15 TGKYPSPEVMREA---IEASGAEVVTVALRRVNLGSK---------------PGGDN---ILDYID-RSGYTLLP----N 68 (247)
T ss_dssp -STSSSHHHHHHH---HHHTT-SEEEEECCGSTTTS----------------TTCHH---CCCCTT-CCTSEEEE----E
T ss_pred cCCCCCHHHHHHH---HHHhCCcEEEEEEecccCCCC---------------CCCcc---HHHHhc-ccCCEECC----c
Confidence 7778887766554 455999999995322222110 00112 222222 12333333 4
Q ss_pred chhccCHHHHHH---HHHHcCCcEEE----ecC----CC-hhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCc
Q 021527 150 PILKRGVDNFMS---TVRDIGIRGLV----VPD----VP-LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEG 217 (311)
Q Consensus 150 ~i~~~g~~~fi~---~~~~aGadGvi----ipD----lp-~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~g 217 (311)
+--.+..++-++ .+.+++-.-.| ++| +| +-|..+-.+.+.+.|+.+.++++++-.. .+++.+ -|
T Consensus 69 TaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~--akrL~d--~G 144 (247)
T PF05690_consen 69 TAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVL--AKRLED--AG 144 (247)
T ss_dssp -TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHH--HHHHHH--TT
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHH--HHHHHH--CC
Confidence 444444555443 45666533222 243 12 1244445556677899999999876432 223333 34
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.--++..-..-|+..++.+ ...|+.+++..++||+|.-||.+|.|+.+..+.|+|||.|-|++.+.
T Consensus 145 caavMPlgsPIGSg~Gi~n--~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A 210 (247)
T PF05690_consen 145 CAAVMPLGSPIGSGRGIQN--PYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKA 210 (247)
T ss_dssp -SEBEEBSSSTTT---SST--HHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTS
T ss_pred CCEEEecccccccCcCCCC--HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhcc
Confidence 3333333223455445543 35788888888999999999999999999999999999999999873
No 193
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.19 E-value=3.7e-05 Score=74.72 Aligned_cols=154 Identities=19% Similarity=0.220 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHCCCCEEEEcC-----------CCCCCCCC---hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC----
Q 021527 78 TTAEALKLLDSCGSDIIELGV-----------PYSDPLAD---GPVIQAAATRSLARGTNFNAILSMLKEVVPQMS---- 139 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~-----------PfsDP~aD---Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~---- 139 (311)
.+.+.++.+.++|.|+|||-. |.++---| |. +.+- .+=++++++.||+.+.
T Consensus 145 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGs-lenR----------~r~~~eii~~vr~~vg~~~~ 213 (353)
T cd04735 145 AFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGS-LENR----------MRFPLAVVKAVQEVIDKHAD 213 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCc-HHHH----------HHHHHHHHHHHHHHhccccC
Confidence 578888999999999999953 43332222 22 2211 1224667778887654
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
.++.+..-.| .+++. -..+..+|..++.+.+.+.|++.|-+...... .. .
T Consensus 214 ~~~~v~~R~s------~~~~~------------~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~-~~-----~------ 263 (353)
T cd04735 214 KDFILGYRFS------PEEPE------------EPGIRMEDTLALVDKLADKGLDYLHISLWDFD-RK-----S------ 263 (353)
T ss_pred CCceEEEEEC------ccccc------------CCCCCHHHHHHHHHHHHHcCCCEEEeccCccc-cc-----c------
Confidence 3333322222 11111 11334577777888888888887765432211 00 0
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+ ..+ ....+.++.+|+.. ++||++.+||++++++.++++.|+|.|-+|.+++.
T Consensus 264 ~------~~~------~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 264 R------RGR------DDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred c------cCC------cchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 0 000 00123455566654 78999999999999999999999999999988875
No 194
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.17 E-value=1.4e-05 Score=72.54 Aligned_cols=78 Identities=31% Similarity=0.393 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCc-cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGV-TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~-TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.+.+.++.+.+..-..+|+.+..|. .|. +. ..+.++++++.+++||.+|+||++.|+++++++.|||+|++|++
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g~----~~-~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~ 105 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAGK----PV-NLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTA 105 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCC----cc-cHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECch
Confidence 4556666665544455777766553 232 11 24678888888899999999999999999999999999999999
Q ss_pred hhch
Q 021527 282 MVKL 285 (311)
Q Consensus 282 iv~~ 285 (311)
+.+.
T Consensus 106 ~l~~ 109 (233)
T PRK00748 106 AVKN 109 (233)
T ss_pred HHhC
Confidence 9873
No 195
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=98.17 E-value=4.3e-05 Score=73.94 Aligned_cols=152 Identities=13% Similarity=0.168 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHCCCCEEEEc-----------CCCCCCCCChHHHHHHHHHHHHcCCCH----HHHHHHHHHhhccCCCcE
Q 021527 78 TTAEALKLLDSCGSDIIELG-----------VPYSDPLADGPVIQAAATRSLARGTNF----NAILSMLKEVVPQMSCPI 142 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG-----------~PfsDP~aDGp~Iq~a~~~Al~~G~~~----~~~~~~i~~ir~~~~iPi 142 (311)
.+.+.++.+.++|.|+|||- -|+++---| +.|=++ +=++++++.||+.++.||
T Consensus 143 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD------------~yGGslenR~Rf~~eii~~ir~~~~~~v 210 (337)
T PRK13523 143 AFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTD------------EYGGSPENRYRFLREIIDAVKEVWDGPL 210 (337)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCC------------CCCCCHHHHHHHHHHHHHHHHHhcCCCe
Confidence 57888899999999999993 244333223 122222 334678888888777777
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
.+-. ..+++. -..+..||..++.+.+.+.|++.+-+...+... ...
T Consensus 211 ~vRi--------s~~d~~------------~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~---------~~~----- 256 (337)
T PRK13523 211 FVRI--------SASDYH------------PGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVP---------ARI----- 256 (337)
T ss_pred EEEe--------cccccC------------CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC---------CCC-----
Confidence 7632 111111 112446788888888888898877764432110 000
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
....| . ..++.+++|+.+++||++.++|++++++.++++.| +|.|-+|-+++.
T Consensus 257 --~~~~~----~---~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ia 310 (337)
T PRK13523 257 --DVYPG----Y---QVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLR 310 (337)
T ss_pred --CCCcc----c---cHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHh
Confidence 00011 1 23567888998999999999999999999999887 999988887765
No 196
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=98.17 E-value=0.00014 Score=67.88 Aligned_cols=172 Identities=21% Similarity=0.307 Sum_probs=103.9
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..++.++.+.+.|||+|.+|...+.|-+++-..+. .++.+..+++.+++..++|+-+-+|.
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~----------E~~rl~~~v~~i~~~~~~plSIDT~~------ 85 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEE----------ELERVIPVLEALRGELDVLISVDTFR------ 85 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHH----------HHHHHHHHHHHHHhcCCCcEEEeCCC------
Confidence 45788999999999999999999877777555321111 12334567888888789999998874
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhH-HHHHHHHHHcCCCeEEEeC---CCC----------hHHHHHHHH---H--hC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEET-ESLQKEAMKNKIELVLFTT---PTT----------PTDRMKAIV---E--AS 215 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~-~~~~~~~~~~gi~~I~lis---p~t----------~~eri~~i~---~--~a 215 (311)
.+-++.+.+.|++ ++.|+..+.. .++.+.++++|...|.+-. |.+ .++++.... + ..
T Consensus 86 --~~v~e~al~~G~~--iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 161 (257)
T cd00739 86 --AEVARAALEAGAD--IINDVSGGSDDPAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAES 161 (257)
T ss_pred --HHHHHHHHHhCCC--EEEeCCCCCCChHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHH
Confidence 3456777778877 4666554432 5677888999998887543 222 122321111 1 12
Q ss_pred Cc----eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH
Q 021527 216 EG----FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG 270 (311)
Q Consensus 216 ~g----fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~ 270 (311)
.| -+|+-...|.+.+ ...+..+.+.++++|+. +.|+++|. |+..-+..+.+
T Consensus 162 ~Gi~~~~Ii~DPg~gf~ks-~~~~~~~l~~i~~l~~~-~~pil~G~--SrkSfig~~~~ 216 (257)
T cd00739 162 AGVARNRIILDPGIGFGKT-PEHNLELLRRLDELKQL-GLPVLVGA--SRKSFIGALLG 216 (257)
T ss_pred cCCCHHHEEEecCCCcccC-HHHHHHHHHHHHHHHhC-CCcEEEEe--cccHHHHHhcC
Confidence 34 3566555553222 11122334445555554 88998764 44444444443
No 197
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=98.16 E-value=5.9e-05 Score=68.69 Aligned_cols=164 Identities=23% Similarity=0.384 Sum_probs=98.6
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe-------cCcchh
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT-------YYNPIL 152 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~-------Y~n~i~ 152 (311)
.+-+...+++|+|-|||+ +-++.| |+|.. +-.+++.++..++|+..|. .||.-.
T Consensus 11 ~~~l~~A~~~GAdRiELC----~~La~G-------------G~TPS--yG~~k~a~~~~~ipv~~MIRPRgGdFvY~~~E 71 (241)
T COG3142 11 VEGLLAAQAAGADRIELC----DALAEG-------------GLTPS--YGVIKEAVELSKIPVYVMIRPRGGDFVYSDDE 71 (241)
T ss_pred HhhHHHHHHcCCceeehh----hccccC-------------CCCCC--HHHHHHHHhhcCCceEEEEecCCCCcccChHH
Confidence 467788899999999997 223333 44432 3477777777999999994 222111
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCC------hhhHHHHHHHHHHcCCCeEEE----eCCCChHHHHHHHHHhCCceEEEE
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVP------LEETESLQKEAMKNKIELVLF----TTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp------~ee~~~~~~~~~~~gi~~I~l----isp~t~~eri~~i~~~a~gfiY~v 222 (311)
..=..+.++.++++|++||++.-+. .+-.+++.+.+ .|+++.+- ..++ +.+.++.+.+ .||-=+.
T Consensus 72 ~~iM~~DI~~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA--~gL~vTFHrAFD~~~d-~~~ale~li~--~Gv~RIL 146 (241)
T COG3142 72 LEIMLEDIRLARELGVQGVVLGALTADGNIDMPRLEKLIEAA--GGLGVTFHRAFDECPD-PLEALEQLIE--LGVERIL 146 (241)
T ss_pred HHHHHHHHHHHHHcCCCcEEEeeecCCCccCHHHHHHHHHHc--cCCceeeehhhhhcCC-HHHHHHHHHH--CCCcEEe
Confidence 1123567888999999999985322 22344454443 36665553 2343 4455655544 5554444
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcC-C-CcEEEeeCCCCHHHHHHH-HHcCC
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESS-T-KPVAVGFGISKPEHVQQV-AGWGA 273 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~-~-~Pv~vGfGIst~e~v~~v-~~~GA 273 (311)
++|.+.+... -.+.++++-+.. + +-|++|.||+ ++|++.+ ...|+
T Consensus 147 ----TsGg~~sa~e-g~~~l~~li~~a~gri~Im~GaGV~-~~N~~~l~~~tg~ 194 (241)
T COG3142 147 ----TSGGKASALE-GLDLLKRLIEQAKGRIIIMAGAGVR-AENIAELVLLTGV 194 (241)
T ss_pred ----cCCCcCchhh-hHHHHHHHHHHhcCCEEEEeCCCCC-HHHHHHHHHhcCc
Confidence 3444433222 234555544443 3 5688899997 7999998 44443
No 198
>PRK00915 2-isopropylmalate synthase; Validated
Probab=98.16 E-value=0.00015 Score=73.99 Aligned_cols=171 Identities=18% Similarity=0.234 Sum_probs=103.0
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~ 153 (311)
+.+.-+++++.|++.|+|.||+|+|++.|- | ++.++++.+. .+..+..++-.+ .
T Consensus 24 s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~-d---------------------~~~v~~i~~~~~~~~i~a~~r~~---~ 78 (513)
T PRK00915 24 TVEEKLQIAKQLERLGVDVIEAGFPASSPG-D---------------------FEAVKRIARTVKNSTVCGLARAV---K 78 (513)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCChH-H---------------------HHHHHHHHhhCCCCEEEEEccCC---H
Confidence 347789999999999999999999997651 1 2344555433 345566665333 1
Q ss_pred cCHHHHHHHHHHcCCcEEEec----CCC--------hh----hHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh-
Q 021527 154 RGVDNFMSTVRDIGIRGLVVP----DVP--------LE----ETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA- 214 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviip----Dlp--------~e----e~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~- 214 (311)
..++.-.+..+++|++.+.+. |+- .+ ...+..+.++++|+++.+.. ...++.+.+.++++.
T Consensus 79 ~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~ 158 (513)
T PRK00915 79 KDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAA 158 (513)
T ss_pred HHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHH
Confidence 123333333447787766653 221 12 24567888899998865544 223345555444443
Q ss_pred ---CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC----CcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 215 ---SEGFVYLVSSIGVTGARASISGHVQTLLREIKESST----KPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 215 ---a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~----~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
....+++....| . ..|..+.++++.+++.++ +|+-+ .+|...++ ....+++||+.|
T Consensus 159 ~~~Ga~~i~l~DTvG---~--~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvAN-slaAv~aGa~~V 225 (513)
T PRK00915 159 IDAGATTINIPDTVG---Y--TTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVAN-SLAAVEAGARQV 225 (513)
T ss_pred HHcCCCEEEEccCCC---C--CCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHH-HHHHHHhCCCEE
Confidence 223455555444 3 357788899999988764 55544 34665444 445567999865
No 199
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=98.15 E-value=7.5e-05 Score=69.51 Aligned_cols=161 Identities=17% Similarity=0.268 Sum_probs=99.6
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+...+.++.+.+.|||+|.+|...+.|-++- |..- ...+.+...++.+++..++|+.+.+|.
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~--~~~~--------~E~~rl~~~v~~l~~~~~~piSIDT~~------ 85 (258)
T cd00423 22 SLDKALEHARRMVEEGADIIDIGGESTRPGAEP--VSVE--------EELERVIPVLRALAGEPDVPISVDTFN------ 85 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCc--CCHH--------HHHHHHHHHHHHHHhcCCCeEEEeCCc------
Confidence 457889999999999999999999888785421 1000 112345668888888789999998863
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhH-HHHHHHHHHcCCCeEEEeCCC-------------ChHHHHHHHHH-----hC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEET-ESLQKEAMKNKIELVLFTTPT-------------TPTDRMKAIVE-----AS 215 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~-~~~~~~~~~~gi~~I~lisp~-------------t~~eri~~i~~-----~a 215 (311)
.+-++.+.+.|++ ++.|..-+.. .++.+.++++|...|.+.... +.+++.+...+ ..
T Consensus 86 --~~v~~aaL~~g~~--iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 161 (258)
T cd00423 86 --AEVAEAALKAGAD--IINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATE 161 (258)
T ss_pred --HHHHHHHHHhCCC--EEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 3456777888866 4666655443 567788999998877765422 22333222111 12
Q ss_pred Cc----eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEe
Q 021527 216 EG----FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVG 256 (311)
Q Consensus 216 ~g----fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vG 256 (311)
.| -+++-...|.-. .......+.+.++++|+..+.|+++|
T Consensus 162 ~Gi~~~~IilDPg~g~~k-~~~~~~~~l~~i~~~~~~~g~Pil~G 205 (258)
T cd00423 162 AGIPPEDIILDPGIGFGK-TEEHNLELLRRLDAFRELPGLPLLLG 205 (258)
T ss_pred cCCCHHHEEEeCCCCccC-CHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 34 456655555322 11112234444555555447899887
No 200
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=98.15 E-value=5.5e-05 Score=73.32 Aligned_cols=168 Identities=22% Similarity=0.210 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHH-----HHHHHHcCCCH----HHHHHHHHHhhccCCCcEEEEecC
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA-----ATRSLARGTNF----NAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a-----~~~Al~~G~~~----~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
.+.+.++.+.++|.|.|||-. +.|-.+++- +.|--+.|-++ +-++++++.||+.+..++.+..
T Consensus 142 ~f~~AA~ra~~aGfDgVeih~------ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~i-- 213 (343)
T cd04734 142 AFADAARRCQAGGLDGVELQA------AHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGI-- 213 (343)
T ss_pred HHHHHHHHHHHcCCCEEEEcc------ccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEE--
Confidence 577888899999999999942 122221111 11111123222 3457788888888765554432
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcC-CCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNK-IELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGV 227 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~g-i~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~ 227 (311)
+.+.+++. .+| +..+|..++.+.+.+.| ++.+-+........+ ++.+.. +.
T Consensus 214 ----Rl~~~~~~-------~~G-----~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~---------~~~~~~---~~ 265 (343)
T cd04734 214 ----RISGDEDT-------EGG-----LSPDEALEIAARLAAEGLIDYVNVSAGSYYTLL---------GLAHVV---PS 265 (343)
T ss_pred ----Eeehhhcc-------CCC-----CCHHHHHHHHHHHHhcCCCCEEEeCCCCCCccc---------cccccc---CC
Confidence 22222221 111 34567777888888887 787765443321110 000000 00
Q ss_pred cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 228 TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 228 TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
+... +....++++++|+.+++||++.+||.+++++.++++.| +|+|-+|-.++.
T Consensus 266 ~~~~---~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 266 MGMP---PGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred CCCC---cchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHh
Confidence 0000 11124678889998899999999999999999999876 999999988775
No 201
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.15 E-value=0.00054 Score=67.17 Aligned_cols=156 Identities=16% Similarity=0.189 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec----CCCh---h-hHHHHHHHHHHcCC
Q 021527 122 TNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP----DVPL---E-ETESLQKEAMKNKI 193 (311)
Q Consensus 122 ~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip----Dlp~---e-e~~~~~~~~~~~gi 193 (311)
++.+.+.++++++++. .+++-+ ..++. ...+.++.+.++|+|.|.+. |--+ + ....+.+.+++.++
T Consensus 115 ~~p~l~~~iv~~~~~~-~V~v~v--r~~~~---~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~i 188 (368)
T PRK08649 115 IKPELITERIAEIRDA-GVIVAV--SLSPQ---RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDV 188 (368)
T ss_pred CCHHHHHHHHHHHHhC-eEEEEE--ecCCc---CHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCC
Confidence 3445566788888874 444433 22321 24678899999999999883 2111 1 24456777777787
Q ss_pred CeEEEeCCCChHHHHHHHHHhCCceEEE-EecCCccCCC----CCCCchHHHHHHHHhh----c------CCCcEEEeeC
Q 021527 194 ELVLFTTPTTPTDRMKAIVEASEGFVYL-VSSIGVTGAR----ASISGHVQTLLREIKE----S------STKPVAVGFG 258 (311)
Q Consensus 194 ~~I~lisp~t~~eri~~i~~~a~gfiY~-vs~~G~TG~~----~~~~~~~~~~l~~vk~----~------~~~Pv~vGfG 258 (311)
.+|. -.-.|. +-.++..+ .|...+ +..-+.++.. .+........+.++.+ . .++||++.+|
T Consensus 189 pVIa-G~V~t~-e~A~~l~~--aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGG 264 (368)
T PRK08649 189 PVIV-GGCVTY-TTALHLMR--TGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGG 264 (368)
T ss_pred CEEE-eCCCCH-HHHHHHHH--cCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCC
Confidence 7654 233343 33344434 343333 3322111111 1111112222333321 1 1589999999
Q ss_pred CCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 259 ISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
|++..++.+.+.+|||+|.+||.|....+
T Consensus 265 I~~~~diakAlalGAd~Vm~Gs~fa~t~E 293 (368)
T PRK08649 265 IGTSGDIAKAIACGADAVMLGSPLARAAE 293 (368)
T ss_pred CCCHHHHHHHHHcCCCeecccchhccccc
Confidence 99999999999999999999999998665
No 202
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.14 E-value=2e-05 Score=71.55 Aligned_cols=77 Identities=29% Similarity=0.437 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCc-cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGV-TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~-TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.|.+..+.+.+..-..+|+++..+. +|.. . ..++++++++.+++|+.+|+||++.|+++++++.|||.||+||+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~--~---~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~ 103 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGP--V---NLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTA 103 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCC--C---cHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChH
Confidence 4556677775544456888887775 3431 1 24678999888899999999999999999999999999999999
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
+.+
T Consensus 104 ~l~ 106 (230)
T TIGR00007 104 AVE 106 (230)
T ss_pred Hhh
Confidence 876
No 203
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.14 E-value=5.5e-05 Score=73.47 Aligned_cols=140 Identities=22% Similarity=0.256 Sum_probs=90.0
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhccCHH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~~g~~ 157 (311)
..+-++.|.++|+|+|-|+ .++| -+ +...+.++++|+.. ++||+.- |.. ..
T Consensus 109 ~~er~~~L~~agvD~ivID------~a~g--------------~s-~~~~~~ik~ik~~~~~~~viaG---NV~----T~ 160 (352)
T PF00478_consen 109 DFERAEALVEAGVDVIVID------SAHG--------------HS-EHVIDMIKKIKKKFPDVPVIAG---NVV----TY 160 (352)
T ss_dssp HHHHHHHHHHTT-SEEEEE-------SST--------------TS-HHHHHHHHHHHHHSTTSEEEEE---EE-----SH
T ss_pred HHHHHHHHHHcCCCEEEcc------ccCc--------------cH-HHHHHHHHHHHHhCCCceEEec---ccC----CH
Confidence 4678888999999999997 3334 22 35567899998875 5888874 322 23
Q ss_pred HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCch
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGH 237 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~ 237 (311)
+-++.+.++|+|+|.+.=-| . +..| .|. +||..-+.-..
T Consensus 161 e~a~~L~~aGad~vkVGiGp----------------G-----siCt--Tr~------------------v~GvG~PQ~tA 199 (352)
T PF00478_consen 161 EGAKDLIDAGADAVKVGIGP----------------G-----SICT--TRE------------------VTGVGVPQLTA 199 (352)
T ss_dssp HHHHHHHHTT-SEEEESSSS----------------S-----TTBH--HHH------------------HHSBSCTHHHH
T ss_pred HHHHHHHHcCCCEEEEeccC----------------C-----cccc--ccc------------------ccccCCcHHHH
Confidence 44566888999998665111 1 1122 221 12211011112
Q ss_pred HHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 238 VQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 238 ~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
+. .+.+.++..++||+..+||++.-|+.+.+..|||.|-+||.|...-+.
T Consensus 200 v~-~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~Es 249 (352)
T PF00478_consen 200 VY-ECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDES 249 (352)
T ss_dssp HH-HHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTS
T ss_pred HH-HHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCC
Confidence 22 255555556899999999999999999999999999999999987653
No 204
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=98.13 E-value=0.00019 Score=72.11 Aligned_cols=181 Identities=19% Similarity=0.197 Sum_probs=111.0
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEe-------
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFT------- 146 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~------- 146 (311)
..++.++++..|+++|++.||++- |-.... +.+ +--++-.+.++.+++. .++++..+.
T Consensus 24 ~t~dkl~ia~~Ld~~Gv~~IE~~g--------gatf~~-~~~-----f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G 89 (448)
T PRK12331 24 TTEEMLPILEKLDNAGYHSLEMWG--------GATFDA-CLR-----FLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLG 89 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecC--------Cccchh-hhc-----cCCCCHHHHHHHHHHhCCCCEEEEEeccccccc
Confidence 347789999999999999999961 100000 000 0000113456666654 457766432
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCCCeEEEe----CCCChHHHHHHHHH----hCC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKIELVLFT----TPTTPTDRMKAIVE----ASE 216 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi~~I~li----sp~t~~eri~~i~~----~a~ 216 (311)
|.+ .-.--.++|++.+.++|+|.+-+.|-.- +...+..+.++++|+.....+ +|.++.+...++++ ..-
T Consensus 90 ~~~-~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Ga 168 (448)
T PRK12331 90 YRN-YADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGA 168 (448)
T ss_pred ccc-CchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCC
Confidence 321 0000236799999999999988875432 345667888899997643322 34444455433333 233
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
.-||+....| . ..|..+.++++.+|+.+++||-+ .+|... .+.-...++|||.|
T Consensus 169 d~I~i~Dt~G---~--l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~-AN~laAieaGad~v 226 (448)
T PRK12331 169 DSICIKDMAG---I--LTPYVAYELVKRIKEAVTVPLEVHTHATSGIAE-MTYLKAIEAGADII 226 (448)
T ss_pred CEEEEcCCCC---C--CCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHH-HHHHHHHHcCCCEE
Confidence 3456655433 3 34667889999999988888877 566654 45666778999976
No 205
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.11 E-value=2.3e-05 Score=72.26 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=61.2
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.|.+..+.+.+..-..+|++...+..|.. ...+.++++.+.+++|+.+|+||+|.|++++++..|||-+++||++
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~~-----~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~ 107 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGRG-----SNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAA 107 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCCC-----ccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchH
Confidence 45566666655444558888876643321 2247899998888999999999999999999999999999999999
Q ss_pred hch
Q 021527 283 VKL 285 (311)
Q Consensus 283 v~~ 285 (311)
.+-
T Consensus 108 l~~ 110 (241)
T PRK14024 108 LEN 110 (241)
T ss_pred hCC
Confidence 873
No 206
>PRK09389 (R)-citramalate synthase; Provisional
Probab=98.10 E-value=0.00028 Score=71.61 Aligned_cols=167 Identities=19% Similarity=0.285 Sum_probs=105.6
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecCcchhc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILK 153 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~n~i~~ 153 (311)
+.++-+++++.|.+.|+|.||+|+|.+.| + =++.++.+.+. .+..+..++-
T Consensus 22 s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~---~-------------------d~e~v~~i~~~~~~~~i~a~~r------ 73 (488)
T PRK09389 22 TPEEKLEIARKLDELGVDVIEAGSAITSE---G-------------------EREAIKAVTDEGLNAEICSFAR------ 73 (488)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCcCCH---H-------------------HHHHHHHHHhcCCCcEEEeecc------
Confidence 34778999999999999999999998653 1 13455555543 3333444332
Q ss_pred cCHHHHHHHHHHcCCcEEEec----CCC--------h----hhHHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHh-
Q 021527 154 RGVDNFMSTVRDIGIRGLVVP----DVP--------L----EETESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEA- 214 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviip----Dlp--------~----ee~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~- 214 (311)
...+.++.+.++|++.+.+. |+- . +...+..+.++++|+.+.+.. ...++.+.+.++.+.
T Consensus 74 -~~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~ 152 (488)
T PRK09389 74 -AVKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAG 152 (488)
T ss_pred -cCHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHH
Confidence 23667889999999987774 221 1 224556678889998655433 233445665444443
Q ss_pred ---CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 215 ---SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 215 ---a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
...-+++....|. ..|..+.++++.+++..++|+-+ .+|...+ +....+++||+.|
T Consensus 153 ~~~Ga~~i~l~DTvG~-----~~P~~~~~lv~~l~~~~~v~l~~H~HND~GlAvA-NalaAv~aGa~~V 215 (488)
T PRK09389 153 IEAGADRICFCDTVGI-----LTPEKTYELFKRLSELVKGPVSIHCHNDFGLAVA-NTLAALAAGADQV 215 (488)
T ss_pred HhCCCCEEEEecCCCC-----cCHHHHHHHHHHHHhhcCCeEEEEecCCccHHHH-HHHHHHHcCCCEE
Confidence 2234566654443 35777889999999877777644 3355443 4455567999876
No 207
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=98.10 E-value=0.0017 Score=61.73 Aligned_cols=202 Identities=17% Similarity=0.250 Sum_probs=123.7
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-H-cCCCHHHHHH
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-A-RGTNFNAILS 129 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~-~G~~~~~~~~ 129 (311)
..|.++.++++. ++.||-=|. --++..+++|.+.+-+. |--+..++ ..+ . .-.++++.++
T Consensus 7 ~~lr~ll~~~~~----l~~p~~~Da----~SAri~e~~Gf~ai~~S---------g~~~a~~~-lG~PD~g~l~~~e~~~ 68 (292)
T PRK11320 7 ARFRAALAAEKP----LQIVGTINA----YHALLAERAGFKAIYLS---------GGGVAAAS-LGLPDLGITTLDDVLI 68 (292)
T ss_pred HHHHHHHcCCCc----EEecCCCCH----HHHHHHHHcCCCEEEeC---------HHHHHhHh-cCCCCCCCCCHHHHHH
Confidence 457777666553 234443332 34467788999999884 33232111 011 1 1258899999
Q ss_pred HHHHhhccCCCcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecC---------------CChhhHHHHHHHHHH-
Q 021527 130 MLKEVVPQMSCPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPD---------------VPLEETESLQKEAMK- 190 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipD---------------lp~ee~~~~~~~~~~- 190 (311)
.+++|...+++||++. ||-|+. .+.+.++.+.++|+.|+.+=| .|.||...-.+.+++
T Consensus 69 ~~~~I~~~~~iPviaD~d~GyG~~~---~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a 145 (292)
T PRK11320 69 DVRRITDACDLPLLVDIDTGFGGAF---NIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDA 145 (292)
T ss_pred HHHHHHhccCCCEEEECCCCCCCHH---HHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHh
Confidence 9999999999999998 576644 345778999999999999977 244554332233322
Q ss_pred -cCCCeEEEeCCCC--------hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE---eeC
Q 021527 191 -NKIELVLFTTPTT--------PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV---GFG 258 (311)
Q Consensus 191 -~gi~~I~lisp~t--------~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v---GfG 258 (311)
.+.+.++..=... ..+|.+.+.+..-..||+.. .+ + .+.++++.+..+.|+.+ .+|
T Consensus 146 ~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~---~~--------~-~~~i~~~~~~~~~Pl~~n~~~~~ 213 (292)
T PRK11320 146 RTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEA---MT--------E-LEMYRRFADAVKVPILANITEFG 213 (292)
T ss_pred ccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecC---CC--------C-HHHHHHHHHhcCCCEEEEeccCC
Confidence 2555444321111 12666666665555666542 11 1 35577777767788843 334
Q ss_pred CCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 259 ISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
-+-.-.++++.++|..-|+.|+...+..
T Consensus 214 ~~p~~s~~~L~~lGv~~v~~~~~~~~aa 241 (292)
T PRK11320 214 ATPLFTTEELASAGVAMVLYPLSAFRAM 241 (292)
T ss_pred CCCCCCHHHHHHcCCcEEEEChHHHHHH
Confidence 3211247788889999999998876644
No 208
>PRK08185 hypothetical protein; Provisional
Probab=98.09 E-value=0.0027 Score=60.20 Aligned_cols=203 Identities=16% Similarity=0.198 Sum_probs=132.3
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHH
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSML 131 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i 131 (311)
+.++..++. +-++..|= -.|++...-++++.++.+..+|----|-.-.+. | . ++..++
T Consensus 3 ~~L~~A~~~-~yaV~AfN---~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~---------------~--~-~~~~~~ 60 (283)
T PRK08185 3 ELLKVAKEH-QFAVGAFN---VADSCFLRAVVEEAEANNAPAIIAIHPNELDFL---------------G--D-NFFAYV 60 (283)
T ss_pred HHHHHHHHc-CceEEEEE---eCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhc---------------c--H-HHHHHH
Confidence 455554433 45565555 457889999999999999998765433211111 1 1 245677
Q ss_pred HHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE---EeCC-
Q 021527 132 KEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL---FTTP- 201 (311)
Q Consensus 132 ~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~---lisp- 201 (311)
+.+.++.++||.+-. + +..-.+.++.+.+.|.+.|.+ .++|+|| ..++++.++.+|+.+=. .+.-
T Consensus 61 ~~~a~~~~vPV~lHL--D---Hg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~ 135 (283)
T PRK08185 61 RERAKRSPVPFVIHL--D---HGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNT 135 (283)
T ss_pred HHHHHHCCCCEEEEC--C---CCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCc
Confidence 777788899998853 1 222346788999999999988 5899887 56678888888874310 1110
Q ss_pred ------------CChHHHHHHHHHhCCceEEEEecCCccCC------CCCCCchHHHHHHHHhhcCCCcEEE--eeCCCC
Q 021527 202 ------------TTPTDRMKAIVEASEGFVYLVSSIGVTGA------RASISGHVQTLLREIKESSTKPVAV--GFGISK 261 (311)
Q Consensus 202 ------------~t~~eri~~i~~~a~gfiY~vs~~G~TG~------~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIst 261 (311)
-|+++..++..+ ..|..|+--..|+.+. +..++ .+.++++++.+++|++. |.|+.
T Consensus 136 e~~~~~~~~~~~~t~peea~~f~~-~TgvD~LAvaiGt~HG~y~~~~kp~L~---~e~l~~I~~~~~iPLVlHGgsg~~- 210 (283)
T PRK08185 136 GTSIEGGVSEIIYTDPEQAEDFVS-RTGVDTLAVAIGTAHGIYPKDKKPELQ---MDLLKEINERVDIPLVLHGGSANP- 210 (283)
T ss_pred ccccccccccccCCCHHHHHHHHH-hhCCCEEEeccCcccCCcCCCCCCCcC---HHHHHHHHHhhCCCEEEECCCCCC-
Confidence 123344444433 2366677433343322 22233 57899999888999877 44554
Q ss_pred HHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 262 PEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 262 ~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.|+++++.+.|.-=|=|+|.+....
T Consensus 211 ~e~~~~ai~~GI~KiNi~T~l~~a~ 235 (283)
T PRK08185 211 DAEIAESVQLGVGKINISSDMKYAF 235 (283)
T ss_pred HHHHHHHHHCCCeEEEeChHHHHHH
Confidence 6899999999999999999886644
No 209
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=98.08 E-value=0.00012 Score=70.91 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHCCCCEEEE--cC---------CCCCCCCC---hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC-cE
Q 021527 78 TTAEALKLLDSCGSDIIEL--GV---------PYSDPLAD---GPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC-PI 142 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IEl--G~---------PfsDP~aD---Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i-Pi 142 (311)
.+.+.++.+.++|.|+||| +- |.++.-.| |. +.+- .+=.+++++.||+.+.. ||
T Consensus 153 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGs-lenR----------~rf~~eii~air~~vg~d~v 221 (338)
T cd02933 153 DFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGS-IENR----------ARFLLEVVDAVAEAIGADRV 221 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCc-HHHh----------hhHHHHHHHHHHHHhCCCce
Confidence 5788899999999999999 43 44444444 32 2211 22346778888876543 55
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
.+-. | .+++ ..+. ..+...||..++.+.+.+.|++.+-+....+....
T Consensus 222 ~vRi--s------~~~~--------~~~~-~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~--------------- 269 (338)
T cd02933 222 GIRL--S------PFGT--------FNDM-GDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP--------------- 269 (338)
T ss_pred EEEE--C------cccc--------CCCC-CCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc---------------
Confidence 4421 1 1111 1111 12345677777888888888877655332211000
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.....++.+++|+.+++||++.+||+ ++++.++++.| +|.|-+|-+++.
T Consensus 270 ------------~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la 319 (338)
T cd02933 270 ------------EDQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred ------------cccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence 01123678889999999999999997 99999999876 999999988775
No 210
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.08 E-value=1.6e-05 Score=73.65 Aligned_cols=77 Identities=23% Similarity=0.308 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCc-cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGV-TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~-TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.+.+.++.+.+..-..+|++...+. ++. ....++++++++.+++||.+|+||++.+++++++..|||+|+|||+
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~-----~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~ 105 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGR-----TTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTA 105 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccC-----hhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChh
Confidence 4456666665543345666654432 221 1235789999998999999999999999999999999999999999
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
+.+
T Consensus 106 ~~~ 108 (254)
T TIGR00735 106 AVK 108 (254)
T ss_pred Hhh
Confidence 876
No 211
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.07 E-value=7.3e-05 Score=73.93 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCcEEEecCCC---hhhHHHHHHHHHHc--CCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCC--
Q 021527 158 NFMSTVRDIGIRGLVVPDVP---LEETESLQKEAMKN--KIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA-- 230 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp---~ee~~~~~~~~~~~--gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~-- 230 (311)
+.++.+.++|+|-|.+ |.. .+...++.+.+++. ++.++ .-.-.| .+..+...+ .|+.++....| .|+
T Consensus 156 ~~v~~lv~aGvDvI~i-D~a~g~~~~~~~~v~~ik~~~p~~~vi-~g~V~T-~e~a~~l~~--aGaD~I~vG~g-~Gs~c 229 (404)
T PRK06843 156 ERVEELVKAHVDILVI-DSAHGHSTRIIELVKKIKTKYPNLDLI-AGNIVT-KEAALDLIS--VGADCLKVGIG-PGSIC 229 (404)
T ss_pred HHHHHHHhcCCCEEEE-ECCCCCChhHHHHHHHHHhhCCCCcEE-EEecCC-HHHHHHHHH--cCCCEEEECCC-CCcCC
Confidence 6778899999999765 332 23455666666664 33322 212334 344444444 35544432211 111
Q ss_pred --C--CCC-CchH--HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 231 --R--ASI-SGHV--QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 231 --~--~~~-~~~~--~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
+ .+. .+.+ ...+.++.+..++||++.+||++++++.+.+.+|||+|.|||+|...-+
T Consensus 230 ~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~E 293 (404)
T PRK06843 230 TTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKE 293 (404)
T ss_pred cceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeeec
Confidence 1 121 1222 2234555445689999999999999999999999999999999998553
No 212
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.07 E-value=0.00012 Score=70.42 Aligned_cols=129 Identities=15% Similarity=0.191 Sum_probs=87.1
Q ss_pred cCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH---HHHHHHHH
Q 021527 137 QMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT---DRMKAIVE 213 (311)
Q Consensus 137 ~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~---eri~~i~~ 213 (311)
.++.|+++-.- ....-+++.+.+.+.|.-+++.= +++|+...+.+..+..++ ...++..+++ +|+..+.+
T Consensus 32 ~l~~P~~inAM----~t~in~~LA~~a~~~G~~~i~hK-~~~E~~~sfvrk~k~~~L--~v~~SvG~t~e~~~r~~~lv~ 104 (321)
T TIGR01306 32 KFKLPVVPANM----QTIIDEKLAEQLAENGYFYIMHR-FDEESRIPFIKDMQERGL--FASISVGVKACEYEFVTQLAE 104 (321)
T ss_pred EecCcEEeecc----chhhhHHHHHHHHHcCCEEEEec-CCHHHHHHHHHhcccccc--EEEEEcCCCHHHHHHHHHHHh
Confidence 47789888533 22222567778899998886544 778886666666655555 3333333333 56666655
Q ss_pred hCCceEEEE--ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 214 ASEGFVYLV--SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 214 ~a~gfiY~v--s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
..-...|++ +..| -...+.+.++++|+.++.|.++.++|-|+++++.+.++|||++.||
T Consensus 105 a~~~~d~i~~D~ahg-------~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 105 EALTPEYITIDIAHG-------HSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred cCCCCCEEEEeCccC-------chHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 432123432 3222 2345778899999988888778888999999999999999999998
No 213
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=98.06 E-value=0.00024 Score=64.21 Aligned_cols=179 Identities=17% Similarity=0.169 Sum_probs=102.4
Q ss_pred EeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC
Q 021527 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 69 i~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
+-+..++.++..+.++.+.+. ++++++|.|+-+ ..| .+.++++++.. .++++..-.
T Consensus 3 vAlD~~~~~~a~~~~~~~~~~-v~~iKig~~l~~----------------~~G------~~~v~~l~~~~-~~v~lD~K~ 58 (213)
T TIGR01740 3 VALDVTTKDEALDLADSLGPE-IEVIKVGIDLLL----------------DGG------DKIIDELAKLN-KLIFLDLKF 58 (213)
T ss_pred EECCCCCHHHHHHHHHhcCCc-CcEEEECHHHHH----------------hcC------HHHHHHHHHcC-CCEEEEEee
Confidence 345678888777777766443 899999977733 122 24677777653 366665433
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEEEe---CCCCh------HHHHHHHHHhCCce
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVLFT---TPTTP------TDRMKAIVEASEGF 218 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~li---sp~t~------~eri~~i~~~a~gf 218 (311)
..+-.+ ..++++.+.+.|+|.+.++-..-.+ ...+.+.++++|..++.++ +|... .+.+.+++..+..
T Consensus 59 ~Dig~t-~~~~~~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~~~v~~v~~lss~~~~~~~~~~~~~v~~~a~~~~~- 136 (213)
T TIGR01740 59 ADIPNT-VKLQYESKIKQGADMVNVHGVAGSESVEAAKEAASEGGRGLLAVTELTSMGSLDYGEDTMEKVLEYAKEAKA- 136 (213)
T ss_pred cchHHH-HHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhhhCcCHHHHHHHHHHHhhh-
Confidence 333211 2456777888999999997554333 5567777777774333222 22211 1222222232221
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCH--HH--------HHHHHHcCCcEEEEhhHhhc
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKP--EH--------VQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~--e~--------v~~v~~~GADGvIVGSaiv~ 284 (311)
.|..|.- .. .+.++++|+..+--+++--||+-. +. ++++.+.|||-+|+|++|.+
T Consensus 137 ------~g~~g~v--~~---~~~~~~ir~~~~~~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~ 201 (213)
T TIGR01740 137 ------FGLDGPV--CS---AEEAKEIRKFTGDFLILTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYA 201 (213)
T ss_pred ------cCCeEEE--eC---HHHHHHHHHhcCCceEEeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcC
Confidence 1111111 01 134666666553235576677522 12 27788999999999999997
No 214
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=98.06 E-value=0.0002 Score=73.28 Aligned_cols=174 Identities=18% Similarity=0.218 Sum_probs=108.0
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-c-CCCcEEEEecCcch-
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-Q-MSCPIALFTYYNPI- 151 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~-~-~~iPiilm~Y~n~i- 151 (311)
+.+.-+++++.|.+.|+|.||+|+|+..|- -++.++++.+ . .+..+..+.-...-
T Consensus 25 s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~----------------------d~~~~~~i~~~~l~~~~i~~~~~~~~~~ 82 (524)
T PRK12344 25 SVEDKLRIARKLDELGVDYIEGGWPGSNPK----------------------DTEFFKRAKELKLKHAKLAAFGSTRRAG 82 (524)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCcCChh----------------------HHHHHHHHHHhCCCCcEEEEEeeccccC
Confidence 357889999999999999999999986651 1334555543 2 24556655422110
Q ss_pred hccCHHHHHHHHHHcCCcEEEec----CC--------C----hhhHHHHHHHHHHcCCCeEEEe-----CCCChHHHHHH
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVP----DV--------P----LEETESLQKEAMKNKIELVLFT-----TPTTPTDRMKA 210 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviip----Dl--------p----~ee~~~~~~~~~~~gi~~I~li-----sp~t~~eri~~ 210 (311)
.....++-++.+.++|++.+.+. |+ . ++...+..+.++++|++..+.. ...++.+.+.+
T Consensus 83 i~~~~d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~ 162 (524)
T PRK12344 83 VSAEEDPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALA 162 (524)
T ss_pred CCcccHHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHH
Confidence 00112456677889999987774 21 1 1234567778899998754322 12344555544
Q ss_pred HHHh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 211 IVEA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 211 i~~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
+++. ....+++....| . ..|..+.++++.+++.+++|+-+ .+|...++ ....+++|||.|
T Consensus 163 ~~~~~~~~Gad~i~l~DTvG---~--~~P~~v~~li~~l~~~~~v~i~~H~HND~GlA~AN-slaAi~aGa~~V 230 (524)
T PRK12344 163 TLKAAAEAGADWVVLCDTNG---G--TLPHEVAEIVAEVRAAPGVPLGIHAHNDSGCAVAN-SLAAVEAGARQV 230 (524)
T ss_pred HHHHHHhCCCCeEEEccCCC---C--cCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHH-HHHHHHhCCCEE
Confidence 4432 233466655444 3 35777889999999988777766 45665544 445567899876
No 215
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=98.06 E-value=0.00044 Score=69.13 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=36.6
Q ss_pred CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 250 TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 250 ~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
++||++.+||.|++++..++.+|||||.+||.+.-..+.
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~Es 262 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEA 262 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCccc
Confidence 689999999999999999999999999999999998764
No 216
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.06 E-value=8.5e-05 Score=75.59 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=78.6
Q ss_pred HHHHHHHHcCCcEEEecCCChhh---HHHHHHHHHHc--CCCeEEEeCCCChHHHHHHHHHhCCceEEE-Eec-CC---c
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEE---TESLQKEAMKN--KIELVLFTTPTTPTDRMKAIVEASEGFVYL-VSS-IG---V 227 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee---~~~~~~~~~~~--gi~~I~lisp~t~~eri~~i~~~a~gfiY~-vs~-~G---~ 227 (311)
+-++.+.++|+|.+ +.|.+... ..++.+.+++. ++.++ .-.-.|.++ .+...+ .|+..+ ++. .| +
T Consensus 251 ~r~~~l~~ag~d~i-~iD~~~g~~~~~~~~i~~ik~~~p~~~vi-~g~v~t~e~-a~~a~~--aGaD~i~vg~g~G~~~~ 325 (505)
T PLN02274 251 ERLEHLVKAGVDVV-VLDSSQGDSIYQLEMIKYIKKTYPELDVI-GGNVVTMYQ-AQNLIQ--AGVDGLRVGMGSGSICT 325 (505)
T ss_pred HHHHHHHHcCCCEE-EEeCCCCCcHHHHHHHHHHHHhCCCCcEE-EecCCCHHH-HHHHHH--cCcCEEEECCCCCcccc
Confidence 45677899999996 44766543 23466666664 33322 223445444 333334 444444 221 11 1
Q ss_pred c----CCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 228 T----GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 228 T----G~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
| |..... ......+.++.+..++||++.+||+++.++.+++.+|||+|.+||+|...-+.
T Consensus 326 t~~~~~~g~~~-~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Es 389 (505)
T PLN02274 326 TQEVCAVGRGQ-ATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEA 389 (505)
T ss_pred CccccccCCCc-ccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccC
Confidence 2 110011 12234577777777899999999999999999999999999999999987753
No 217
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=98.02 E-value=0.00052 Score=69.21 Aligned_cols=183 Identities=17% Similarity=0.131 Sum_probs=111.1
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecC-cch
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYY-NPI 151 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~-n~i 151 (311)
-..++.+++++.|+++|++.||++.+- ... ++.+-+ -++-.+.++++++. .++++..+.-. |.+
T Consensus 22 ~~t~dkl~Ia~~Ld~~Gv~~IE~~gga--------tfd-~~~~Fl-----~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~ 87 (467)
T PRK14041 22 MRTEDMLPALEAFDRMGFYSMEVWGGA--------TFD-VCVRFL-----NENPWERLKEIRKRLKNTKIQMLLRGQNLV 87 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCc--------cch-hhhccc-----CCCHHHHHHHHHHhCCCCEEEEEecccccc
Confidence 345778999999999999999997221 100 000100 01124566666654 45666553211 111
Q ss_pred -----hccCHHHHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCCCeEEEe----CCCChHHHHHHHHHh----CC
Q 021527 152 -----LKRGVDNFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKIELVLFT----TPTTPTDRMKAIVEA----SE 216 (311)
Q Consensus 152 -----~~~g~~~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi~~I~li----sp~t~~eri~~i~~~----a~ 216 (311)
-.-=++.|++.+.++|+|.+-+.|-.- +......+.++++|......+ +|..+.+...++++. .-
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Ga 167 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGV 167 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCC
Confidence 000135799999999999988875432 345667788899998654322 354445554444332 23
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
.-||+-...| . ..|..+.++++.+|+.+++||-+ .+|... .+.-...++|||.|
T Consensus 168 d~I~i~Dt~G---~--l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~-AN~laAieaGad~v 225 (467)
T PRK14041 168 DSICIKDMAG---L--LTPKRAYELVKALKKKFGVPVEVHSHCTTGLAS-LAYLAAVEAGADMF 225 (467)
T ss_pred CEEEECCccC---C--cCHHHHHHHHHHHHHhcCCceEEEecCCCCcHH-HHHHHHHHhCCCEE
Confidence 3456555444 2 34677899999999988888866 345543 45566678999876
No 218
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.01 E-value=0.00029 Score=68.00 Aligned_cols=162 Identities=17% Similarity=0.253 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHCCCCEEEE--cC---------CCCCCCCC--hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcE
Q 021527 78 TTAEALKLLDSCGSDIIEL--GV---------PYSDPLAD--GPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPI 142 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IEl--G~---------PfsDP~aD--Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPi 142 (311)
.+.+.++.+.++|.|.||| |- |.++---| |-.+.+ +.+-.++++++||+.+ +.||
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslen----------R~rf~~EiI~aIR~avG~d~~v 219 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLEN----------RARLLLEIYDAIRAAVGPGFPV 219 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHH----------HHHHHHHHHHHHHHHcCCCCeE
Confidence 5788889999999999999 32 43221111 111221 2234467888888776 4666
Q ss_pred EEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 143 ALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 143 ilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
.+-. | ..++.+ . | +..+|..++.+.+.+.|++.+-+.. .+..+. . +..
T Consensus 220 ~vri--s------~~~~~~----~---g-----~~~eea~~ia~~Le~~Gvd~iev~~-g~~~~~---------~--~~~ 267 (338)
T cd04733 220 GIKL--N------SADFQR----G---G-----FTEEDALEVVEALEEAGVDLVELSG-GTYESP---------A--MAG 267 (338)
T ss_pred EEEE--c------HHHcCC----C---C-----CCHHHHHHHHHHHHHcCCCEEEecC-CCCCCc---------c--ccc
Confidence 6632 2 111111 1 1 2456777888888888887765432 211000 0 000
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.....+... +.-..+..+++|+.+++||+++++|++++++.++++.| +|.|-+|-.++.
T Consensus 268 ~~~~~~~~~---~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 268 AKKESTIAR---EAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred cccCCcccc---chhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 000000000 11124677889999999999999999999999999876 899999977765
No 219
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.01 E-value=0.00044 Score=66.48 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHhhcc-CCCcEEEEe--cC-cchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE
Q 021527 123 NFNAILSMLKEVVPQ-MSCPIALFT--YY-NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF 198 (311)
Q Consensus 123 ~~~~~~~~i~~ir~~-~~iPiilm~--Y~-n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l 198 (311)
+.+++-+.++++|+. ++.|+.+.. +. |+. .++.++.+.+.++.-+++.--.+++ .+.+++.|+..+..
T Consensus 38 ~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~----~~~~l~vi~e~~v~~V~~~~G~P~~----~~~lk~~Gi~v~~~ 109 (320)
T cd04743 38 RGEQVKALLEETAELLGDKPWGVGILGFVDTEL----RAAQLAVVRAIKPTFALIAGGRPDQ----ARALEAIGISTYLH 109 (320)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEeccCCCcc----hHHHHHHHHhcCCcEEEEcCCChHH----HHHHHHCCCEEEEE
Confidence 345555678888875 688977642 21 211 3567888899999998886322332 36678899987765
Q ss_pred eCCCChHHHHHHHHHh-CCceEEEEecC-CccCCCCCCCchHHHHHHHHhh------cCCCcEEEeeCCCCHHHHHHHHH
Q 021527 199 TTPTTPTDRMKAIVEA-SEGFVYLVSSI-GVTGARASISGHVQTLLREIKE------SSTKPVAVGFGISKPEHVQQVAG 270 (311)
Q Consensus 199 isp~t~~eri~~i~~~-a~gfiY~vs~~-G~TG~~~~~~~~~~~~l~~vk~------~~~~Pv~vGfGIst~e~v~~v~~ 270 (311)
++ +..+ .++..+. ++.+|.-..-. |.+|..+.+. -+.+.+..++. ..++||++.+||.+...+..++.
T Consensus 110 v~--s~~~-A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~-L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaala 185 (320)
T cd04743 110 VP--SPGL-LKQFLENGARKFIFEGRECGGHVGPRSSFV-LWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSA 185 (320)
T ss_pred eC--CHHH-HHHHHHcCCCEEEEecCcCcCCCCCCCchh-hHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHH
Confidence 42 3222 2333333 33444333222 2344322221 12233333432 23799999999999999999999
Q ss_pred cCC--------cEEEEhhHhhchhh
Q 021527 271 WGA--------DGVIVGSAMVKLLG 287 (311)
Q Consensus 271 ~GA--------DGvIVGSaiv~~~~ 287 (311)
.|| +||.+||.|+-.-+
T Consensus 186 LGA~~~~~Ga~~GV~mGTrFl~t~E 210 (320)
T cd04743 186 LAAPLAERGAKVGVLMGTAYLFTEE 210 (320)
T ss_pred cCCcccccccccEEEEccHHhcchh
Confidence 988 89999999998654
No 220
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.01 E-value=0.00035 Score=72.33 Aligned_cols=175 Identities=15% Similarity=0.151 Sum_probs=111.6
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEc--------CCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEE
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELG--------VPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIAL 144 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG--------~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiil 144 (311)
-..++..+++..|+++|++.||+| ++|..+- -.+.++.+++. .++++..
T Consensus 18 ~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~----------------------~~e~l~~l~~~~~~~~l~~ 75 (582)
T TIGR01108 18 MRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNED----------------------PWERLRELKKALPNTPLQM 75 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCC----------------------HHHHHHHHHHhCCCCEEEE
Confidence 345778999999999999999997 4554331 13456666653 4677766
Q ss_pred Eec-Ccchhc--c---CHHHHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCCCeEEEe----CCCChHHHHHHHH
Q 021527 145 FTY-YNPILK--R---GVDNFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKIELVLFT----TPTTPTDRMKAIV 212 (311)
Q Consensus 145 m~Y-~n~i~~--~---g~~~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi~~I~li----sp~t~~eri~~i~ 212 (311)
+.- -|.+-- | -.+.|++.+.++|+|.+-+.|-.. +......+.++++|+.....+ +|..+.+...+++
T Consensus 76 L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~ 155 (582)
T TIGR01108 76 LLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLA 155 (582)
T ss_pred EEccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHH
Confidence 531 121110 0 136799999999999988865432 456667788899998655432 3433445443333
Q ss_pred H----hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 213 E----ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 213 ~----~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
+ ..-..+++-...| . ..|..+.++++.+|+..++|+-+ .+|... .+.-...++|||.|
T Consensus 156 ~~~~~~Gad~I~i~Dt~G---~--~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~-An~laAveaGa~~v 221 (582)
T TIGR01108 156 EELLEMGVDSICIKDMAG---I--LTPKAAYELVSALKKRFGLPVHLHSHATTGMAE-MALLKAIEAGADGI 221 (582)
T ss_pred HHHHHcCCCEEEECCCCC---C--cCHHHHHHHHHHHHHhCCCceEEEecCCCCcHH-HHHHHHHHhCCCEE
Confidence 3 2233455544333 3 34677899999999988888765 445543 44556678999876
No 221
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=98.01 E-value=0.00073 Score=64.05 Aligned_cols=172 Identities=15% Similarity=0.188 Sum_probs=104.0
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.++-+++++.|.++|+|.||+| -|.+|..-... . +-.+.++.+++..+..+..+. .|
T Consensus 24 s~e~k~~ia~~L~~~Gv~~IEvg-sf~~p~~~p~~-~--------------d~~e~~~~l~~~~~~~~~~l~-~~----- 81 (287)
T PRK05692 24 PTADKIALIDRLSAAGLSYIEVA-SFVSPKWVPQM-A--------------DAAEVMAGIQRRPGVTYAALT-PN----- 81 (287)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeC-CCcCccccccc-c--------------cHHHHHHhhhccCCCeEEEEe-cC-----
Confidence 34778999999999999999999 34444221100 0 012344455433344444332 23
Q ss_pred CHHHHHHHHHHcCCcEEEecCC------------Ch----hhHHHHHHHHHHcCCCeEEEe-----CC---CChHHHHHH
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDV------------PL----EETESLQKEAMKNKIELVLFT-----TP---TTPTDRMKA 210 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDl------------p~----ee~~~~~~~~~~~gi~~I~li-----sp---~t~~eri~~ 210 (311)
.+-++.+.++|+|.+.+..- .. ++..+..+.++++|+.....+ .| .++.+.+.+
T Consensus 82 --~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~ 159 (287)
T PRK05692 82 --LKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVAD 159 (287)
T ss_pred --HHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHH
Confidence 45668889999998877421 11 235567888899998765322 12 224455444
Q ss_pred HHHh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 211 IVEA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 211 i~~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
+++. .-.-||+.... |. ..|.++.++++.+|+..+ +|+-+ .+|... .+.-..+++|+|.+
T Consensus 160 ~~~~~~~~G~d~i~l~DT~---G~--~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~-AN~laA~~aG~~~i 228 (287)
T PRK05692 160 VAERLFALGCYEISLGDTI---GV--GTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQAL-ANIYASLEEGITVF 228 (287)
T ss_pred HHHHHHHcCCcEEEecccc---Cc--cCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHH-HHHHHHHHhCCCEE
Confidence 4443 23346665543 33 346778999999998764 77765 445543 45566678999876
No 222
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=98.01 E-value=0.00081 Score=61.65 Aligned_cols=197 Identities=16% Similarity=0.206 Sum_probs=102.7
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcc
Q 021527 71 AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNP 150 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~ 150 (311)
+..+++++.++.++.+. ..++++++|.|+ +. ..| ++.++++++. +.++++-.-+.+
T Consensus 9 lD~~~~~~~l~~~~~~~-~~~~~ikvg~~~--------f~--------~~G------~~~i~~l~~~-~~~i~~D~Kl~D 64 (230)
T PRK00230 9 LDFPSKEEALAFLDQLD-PAVLFVKVGMEL--------FT--------AGG------PQFVRELKQR-GFKVFLDLKLHD 64 (230)
T ss_pred cCCCCHHHHHHHHHhcC-CcccEEEEcHHH--------HH--------hcC------HHHHHHHHhc-CCCEEEEeehhh
Confidence 34556776666666543 336788888433 21 123 3567777765 456776655533
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcC-CCeEE--EeCCCChHHHHHHHHHhCCc---eEEEEe
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNK-IELVL--FTTPTTPTDRMKAIVEASEG---FVYLVS 223 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~g-i~~I~--lisp~t~~eri~~i~~~a~g---fiY~vs 223 (311)
+-. -.++.++.+.+.|+|.+.++-..-.+ .....+..++++ ...+. +++..+ .+++.+. ....+ +++-.+
T Consensus 65 i~~-t~~~~i~~~~~~gad~itvH~~ag~~~i~~~~~~~~~~~~~~~~~V~~lts~~-~~~l~~~-~~~~~~~~~v~~~a 141 (230)
T PRK00230 65 IPN-TVAKAVRALAKLGVDMVNVHASGGPRMMKAAREALEPKSRPLLIAVTVLTSMD-EEDLAEL-GINLSLEEQVLRLA 141 (230)
T ss_pred ccc-cHHHHHHHHHHcCCCEEEEcccCCHHHHHHHHHHhhccCCCeEEEEEECCCCC-HHHHHhC-cCCCCHHHHHHHHH
Confidence 322 24567888899999999998443323 333444444331 12222 223222 2333210 00000 000000
Q ss_pred ----cCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHH-----------HHHHHHHcCCcEEEEhhHhhchhh
Q 021527 224 ----SIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPE-----------HVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 224 ----~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e-----------~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
..|.-|-.. ++ ..++++|+.. +..+.+-.||+ ++ ++.++.+.|||++|||.++.+.
T Consensus 142 ~~a~~~g~dgvv~--~~---~~~~~ir~~~~~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a-- 213 (230)
T PRK00230 142 KLAQEAGLDGVVC--SA---QEAAAIREATGPDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQA-- 213 (230)
T ss_pred HHHHHcCCeEEEe--Ch---HHHHHHHhhcCCceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCC--
Confidence 011111100 11 1245666654 34556767886 44 6788888999999999999983
Q ss_pred hcCCchhHHHHHHHHHHHHH
Q 021527 288 EAQSPEEGLKELEKFAKSLK 307 (311)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~ 307 (311)
.+| .+.++++.+++.
T Consensus 214 --~dP---~~~a~~i~~~i~ 228 (230)
T PRK00230 214 --ADP---AAAYEAILAEIA 228 (230)
T ss_pred --CCH---HHHHHHHHHHhh
Confidence 233 344555555543
No 223
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=97.98 E-value=0.0047 Score=58.84 Aligned_cols=202 Identities=16% Similarity=0.202 Sum_probs=121.7
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-H-cCCCHHHHHH
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-A-RGTNFNAILS 129 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~-~G~~~~~~~~ 129 (311)
..|.++.++++.. +.||==| .--++.++++|.+.+-+. |--+..++ ..+ . .-.++++.++
T Consensus 6 ~~~r~l~~~~~~l----~~p~v~D----a~SArl~e~aGf~ai~~s---------g~~~~as~-lG~pD~g~l~~~e~~~ 67 (294)
T TIGR02319 6 RTFRELMNAPEIL----VVPSAYD----ALSAKVIQQAGFPAVHMT---------GSGTSASM-LGLPDLGFTSVSEQAI 67 (294)
T ss_pred HHHHHHhcCCCcE----EeecCcC----HHHHHHHHHcCCCEEEec---------HHHHHHHH-cCCCCcCCCCHHHHHH
Confidence 4566666555432 3344333 234566788899999773 32222111 111 1 1258889999
Q ss_pred HHHHhhccCCCcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecC---------------CChhhHHH-HHHHHHH
Q 021527 130 MLKEVVPQMSCPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPD---------------VPLEETES-LQKEAMK 190 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipD---------------lp~ee~~~-~~~~~~~ 190 (311)
.+++|...+++||++. ||-|+.. +.+.++.+.++|+.|+.+=| +|.||..+ ++.....
T Consensus 68 ~~~~I~~~~~lPv~aD~dtGyG~~~~---v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A 144 (294)
T TIGR02319 68 NAKNIVLAVDVPVIMDADAGYGNAMS---VWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEA 144 (294)
T ss_pred HHHHHHhccCCCEEEECCCCCCCcHH---HHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHh
Confidence 9999999999999998 5777553 35678999999999999976 24444333 3333222
Q ss_pred -cCCCeEEEeC-C----CC---hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcE---EEeeC
Q 021527 191 -NKIELVLFTT-P----TT---PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPV---AVGFG 258 (311)
Q Consensus 191 -~gi~~I~lis-p----~t---~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv---~vGfG 258 (311)
.+.+.++..= . .. ..+|.+.+.+..-..+|+.+ . + + .+.++++.+..+.|+ ++.+|
T Consensus 145 ~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~---~---~-----~-~~ei~~~~~~~~~P~~~nv~~~~ 212 (294)
T TIGR02319 145 REDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLEA---M---L-----D-VEEMKRVRDEIDAPLLANMVEGG 212 (294)
T ss_pred ccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecC---C---C-----C-HHHHHHHHHhcCCCeeEEEEecC
Confidence 2334443321 1 01 12666667665555666532 1 1 1 245777777777776 33333
Q ss_pred CCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 259 ISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
-.-.-.++++.++|.+-|+.|..+.+..
T Consensus 213 ~~p~~s~~eL~~lG~~~v~~~~~~~~aa 240 (294)
T TIGR02319 213 KTPWLTTKELESIGYNLAIYPLSGWMAA 240 (294)
T ss_pred CCCCCCHHHHHHcCCcEEEEcHHHHHHH
Confidence 3222457888889999999998877644
No 224
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=97.98 E-value=0.0018 Score=61.38 Aligned_cols=200 Identities=18% Similarity=0.256 Sum_probs=121.6
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-H-cCCCHHHHHH
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-A-RGTNFNAILS 129 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~-~G~~~~~~~~ 129 (311)
..|.++.++++. ++.||-=|. --++.++++|.+.+-++ |--+..+ ..+ . .-.++++.++
T Consensus 3 ~~lr~l~~~~~~----l~~p~~~Da----~SAri~e~aGf~Ai~~s---------g~~~a~~--lG~pD~g~lt~~e~~~ 63 (285)
T TIGR02317 3 KAFRAALAKEDI----LQIPGAINA----MAALLAERAGFEAIYLS---------GAAVAAS--LGLPDLGITTLDEVAE 63 (285)
T ss_pred HHHHHHHhCCCc----EEeCCCCCH----HHHHHHHHcCCCEEEEc---------HHHHHHh--CCCCCCCCCCHHHHHH
Confidence 356666666553 234444332 33456678899999885 3222210 001 0 1258889999
Q ss_pred HHHHhhccCCCcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecCC---------------ChhhHHHHHHHHHH-
Q 021527 130 MLKEVVPQMSCPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPDV---------------PLEETESLQKEAMK- 190 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipDl---------------p~ee~~~~~~~~~~- 190 (311)
.+++|...+++||++. ||-|+. .+.+.++.+.++|+.|+.+=|- |.||...-.+.+++
T Consensus 64 ~~~~I~~~~~iPviaD~d~GyG~~~---~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a 140 (285)
T TIGR02317 64 DARRITRVTDLPLLVDADTGFGEAF---NVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDA 140 (285)
T ss_pred HHHHHHhccCCCEEEECCCCCCCHH---HHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHh
Confidence 9999999999999998 576633 3456788999999999999772 44553332233332
Q ss_pred -cCCCeEEEeCCC--------ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE---eeC
Q 021527 191 -NKIELVLFTTPT--------TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV---GFG 258 (311)
Q Consensus 191 -~gi~~I~lisp~--------t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v---GfG 258 (311)
.+.+.++..=-. ...+|.+.+.+..-..+|+.. .+ ..+.++++.+..+.|+++ .+|
T Consensus 141 ~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g---~~---------~~e~i~~~~~~i~~Pl~~n~~~~~ 208 (285)
T TIGR02317 141 KRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEA---LT---------SLEEFRQFAKAVKVPLLANMTEFG 208 (285)
T ss_pred ccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCC---CC---------CHHHHHHHHHhcCCCEEEEeccCC
Confidence 244444332101 112566666665555666532 11 134577777777788843 334
Q ss_pred CCCH-HHHHHHHHcCCcEEEEhhHhhchh
Q 021527 259 ISKP-EHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 259 Ist~-e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
- +| -+++++.++|..-|+.|..+.+..
T Consensus 209 ~-~p~~s~~eL~~lGv~~v~~~~~~~~aa 236 (285)
T TIGR02317 209 K-TPLFTADELREAGYKMVIYPVTAFRAM 236 (285)
T ss_pred C-CCCCCHHHHHHcCCcEEEEchHHHHHH
Confidence 3 23 357788889999999998887654
No 225
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=97.97 E-value=0.0011 Score=64.45 Aligned_cols=171 Identities=17% Similarity=0.228 Sum_probs=101.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.++-+++++.|.++|+|.||+|.|- .|-+ .|-.. ..+++++.++++. ...++.++ .|
T Consensus 67 ~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~-vPqma-----------d~~ev~~~i~~~~-~~~~~~l~---~n------ 123 (347)
T PLN02746 67 TSVKVELIQRLVSSGLPVVEATSFV-SPKW-VPQLA-----------DAKDVMAAVRNLE-GARFPVLT---PN------ 123 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCc-Cccc-ccccc-----------cHHHHHHHHHhcc-CCceeEEc---CC------
Confidence 4778999999999999999999554 4421 11110 1122233333321 12223222 13
Q ss_pred HHHHHHHHHHcCCcEEEec------------CCChhh----HHHHHHHHHHcCCCeEEEeC-----C---CChHHHHHHH
Q 021527 156 VDNFMSTVRDIGIRGLVVP------------DVPLEE----TESLQKEAMKNKIELVLFTT-----P---TTPTDRMKAI 211 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviip------------Dlp~ee----~~~~~~~~~~~gi~~I~lis-----p---~t~~eri~~i 211 (311)
.+-++.+.++|++.+.+. ....+| ..+..+.++++|+.+...++ | .++.+++.++
T Consensus 124 -~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~ 202 (347)
T PLN02746 124 -LKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYV 202 (347)
T ss_pred -HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHH
Confidence 578888999999987764 233344 34678888999998743221 1 2334554444
Q ss_pred HHh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCC-cEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 212 VEA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTK-PVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 212 ~~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~-Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
++. .-.-|++.. ++|. ..|..+.++++.+|+.++. |+-+ .+|... .+.-..+++|||.+
T Consensus 203 ~~~~~~~Gad~I~l~D---T~G~--a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~-AN~lAA~~aGa~~v 270 (347)
T PLN02746 203 AKELYDMGCYEISLGD---TIGV--GTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQAL-ANILVSLQMGISTV 270 (347)
T ss_pred HHHHHHcCCCEEEecC---CcCC--cCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHH-HHHHHHHHhCCCEE
Confidence 443 223455544 4444 3467789999999987653 5544 344443 45666778999876
No 226
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=97.97 E-value=0.0002 Score=70.44 Aligned_cols=174 Identities=16% Similarity=0.199 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCC-hHHHHHH-----HHHHHHcCCCH----HHHHHHHHHhhccC--CCcEEEE
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLAD-GPVIQAA-----ATRSLARGTNF----NAILSMLKEVVPQM--SCPIALF 145 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aD-Gp~Iq~a-----~~~Al~~G~~~----~~~~~~i~~ir~~~--~iPiilm 145 (311)
.+.+.++.+.++|.|+|||- -+. |-.+.+- +.|--+.|-++ +-+++++++||+.+ +.||.+-
T Consensus 151 ~f~~AA~ra~~AGfDgVEih------~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vr 224 (382)
T cd02931 151 KFGESAVIAKEAGFDGVEIH------AVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLR 224 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEe------ccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEE
Confidence 57888888999999999993 122 2222221 11112223232 34567888888876 4566663
Q ss_pred ecCcchhccCHHHHHHHHHH---cCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEE
Q 021527 146 TYYNPILKRGVDNFMSTVRD---IGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLV 222 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~---aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~v 222 (311)
. |+ .+++..... .+.+. .-..+.+||..++.+.+.+.|++.+-+...+. ... .+..
T Consensus 225 i--~~------~~~~~~~~~~~~~~~~~-~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~-~~~-----------~~~~ 283 (382)
T cd02931 225 Y--SV------KSYIKDLRQGALPGEEF-QEKGRDLEEGLKAAKILEEAGYDALDVDAGSY-DAW-----------YWNH 283 (382)
T ss_pred E--ec------hhhcccccccccccccc-ccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC-ccc-----------cccc
Confidence 2 21 111110000 01111 12345667888888888888988776543321 100 0000
Q ss_pred ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 223 SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
... . . -+....++.+.+|+.+++||++.+||++++++.++++.| +|.|-+|-+++.
T Consensus 284 ~~~-~--~---~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 284 PPM-Y--Q---KKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred CCc-c--C---CcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 000 0 0 011123567889998999999999999999999999876 999999988775
No 227
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.96 E-value=5.4e-05 Score=68.97 Aligned_cols=78 Identities=18% Similarity=0.255 Sum_probs=58.6
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.+.+.++.+.+..-..+|+....+ .|...+.+ .+.++++++.+++||.+|+||++.++++++.+.|+|+|++||++
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~-~~~~~~~n---~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~ 106 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDA-SKRGREPL---FELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAA 106 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCC-cccCCCCC---HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 556666666554445567766554 22222222 36788888888999999999999999999999999999999998
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 107 l~ 108 (232)
T TIGR03572 107 LE 108 (232)
T ss_pred hc
Confidence 76
No 228
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.96 E-value=4.5e-05 Score=70.57 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.+.+..+.+.+..-..+|+..... .+... ....+.++++++.+++||++|+||++.++++++++.|||+|++||++
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~-~~~~~---~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~ 106 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITA-SSEGR---DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAA 106 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCc-ccccC---cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 445666666554556678776553 11111 22357899999988999999999999999999999999999999988
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 107 l~ 108 (253)
T PRK02083 107 VA 108 (253)
T ss_pred hh
Confidence 76
No 229
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=97.96 E-value=0.0004 Score=71.99 Aligned_cols=175 Identities=17% Similarity=0.189 Sum_probs=112.5
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEc--------CCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEE
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELG--------VPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIA 143 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG--------~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPii 143 (311)
....++...++..|+++|++.||++ +||.. -+ =++.++++++. .++|+.
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~-------------------e~---p~e~lr~l~~~~~~~~lq 80 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLG-------------------ED---PWERLRELKKAMPNTPQQ 80 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccC-------------------CC---HHHHHHHHHHhCCCCeEE
Confidence 3456788999999999999999994 44421 11 14566666654 567776
Q ss_pred EEe-------cCcchhccCHHHHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCCCe---EEE-eCCCChHHHHHH
Q 021527 144 LFT-------YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKIEL---VLF-TTPTTPTDRMKA 210 (311)
Q Consensus 144 lm~-------Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi~~---I~l-isp~t~~eri~~ 210 (311)
.+. |.+ .-.--.+.|++.+.++|+|.+-+-|-.. +......+.++++|... |.+ .+|..+.+...+
T Consensus 81 ml~Rg~n~vg~~~-ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~ 159 (593)
T PRK14040 81 MLLRGQNLLGYRH-YADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVD 159 (593)
T ss_pred EEecCcceecccc-CcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHH
Confidence 543 222 0000236799999999999998876432 34566788889999853 222 356444454433
Q ss_pred HHH----hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 211 IVE----ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 211 i~~----~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
+++ ..-..+|+....|. ..|..+.++++.+|+.+++||-+ .+|... .+.-...++|||.|
T Consensus 160 ~a~~l~~~Gad~i~i~Dt~G~-----l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~-An~laAieAGa~~v 227 (593)
T PRK14040 160 LAKQLEDMGVDSLCIKDMAGL-----LKPYAAYELVSRIKKRVDVPLHLHCHATTGLST-ATLLKAIEAGIDGV 227 (593)
T ss_pred HHHHHHHcCCCEEEECCCCCC-----cCHHHHHHHHHHHHHhcCCeEEEEECCCCchHH-HHHHHHHHcCCCEE
Confidence 333 22334565554442 34677899999999988888766 445543 44556678999866
No 230
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=97.96 E-value=0.00078 Score=63.40 Aligned_cols=171 Identities=16% Similarity=0.200 Sum_probs=102.4
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.+.-+++++.|.+.|+|.||+|. |+.|.+- |-. ...+ +.++.+....+..+..+. .|
T Consensus 19 ~e~K~~i~~~L~~~Gv~~IEvGs-~~~~~~~-p~~-----------~d~~---~~~~~l~~~~~~~~~~~~-~~------ 75 (274)
T cd07938 19 TEDKIELIDALSAAGLRRIEVTS-FVSPKWV-PQM-----------ADAE---EVLAGLPRRPGVRYSALV-PN------ 75 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCC-CCCcccc-ccc-----------CCHH---HHHhhcccCCCCEEEEEC-CC------
Confidence 47889999999999999999995 3444321 110 0111 233333332234444443 22
Q ss_pred HHHHHHHHHHcCCcEEEecCCCh----------------hhHHHHHHHHHHcCCCeEEEeC-----C---CChHHHHHHH
Q 021527 156 VDNFMSTVRDIGIRGLVVPDVPL----------------EETESLQKEAMKNKIELVLFTT-----P---TTPTDRMKAI 211 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviipDlp~----------------ee~~~~~~~~~~~gi~~I~lis-----p---~t~~eri~~i 211 (311)
.+-++.+.++|++.+.+..-.- +...+..+.++++|+.+...++ | .++.+.+.++
T Consensus 76 -~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~ 154 (274)
T cd07938 76 -LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEV 154 (274)
T ss_pred -HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHH
Confidence 5568899999999887753221 2245567788999997653221 1 1233443333
Q ss_pred HHh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 212 VEA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 212 ~~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
++. .-..+|+....| . ..|..+.++++.+|+.. ++|+-+ .+|... .+.....++|||.+
T Consensus 155 ~~~~~~~Ga~~i~l~DT~G---~--~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~-AN~laA~~aGa~~i 222 (274)
T cd07938 155 AERLLDLGCDEISLGDTIG---V--ATPAQVRRLLEAVLERFPDEKLALHFHDTRGQAL-ANILAALEAGVRRF 222 (274)
T ss_pred HHHHHHcCCCEEEECCCCC---c--cCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHH-HHHHHHHHhCCCEE
Confidence 332 233466665444 3 34677899999999876 467655 345543 45566678999865
No 231
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=97.95 E-value=0.00051 Score=70.34 Aligned_cols=173 Identities=17% Similarity=0.211 Sum_probs=105.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-cC-CCcEEEEecCc-chh
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-QM-SCPIALFTYYN-PIL 152 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~-~~-~iPiilm~Y~n-~i~ 152 (311)
.+.-+++++.|.+.|+|.||+|+|++.|- -++.++++++ .. +..|..++-.. +-.
T Consensus 22 ~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~----------------------d~~~v~~i~~~~~~~~~i~~~~r~~r~~~ 79 (526)
T TIGR00977 22 LEDKIRIAERLDDLGIHYIEGGWPGANPK----------------------DVQFFWQLKEMNFKNAKIVAFCSTRRPHK 79 (526)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCChH----------------------HHHHHHHHHHhCCCCcEEEEEeeecCCCC
Confidence 47789999999999999999999998761 1334555543 22 23455543111 101
Q ss_pred ccCHHHHHHHHHHcCCcEEEec----CC--------Chhh----HHHHHHHHHHcCCCeEEEeC-----CCChHHHHHHH
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVP----DV--------PLEE----TESLQKEAMKNKIELVLFTT-----PTTPTDRMKAI 211 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviip----Dl--------p~ee----~~~~~~~~~~~gi~~I~lis-----p~t~~eri~~i 211 (311)
.-..++-++.+.++|.+.+.+. |+ ..+| ..+..+.++++|+++.+... -.++.+.+.++
T Consensus 80 ~~~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~ 159 (526)
T TIGR00977 80 KVEEDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALAT 159 (526)
T ss_pred CCchHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHH
Confidence 1133567888999999987762 21 1233 34557788999987653222 13455665555
Q ss_pred HHhC----CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCc-EEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 212 VEAS----EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKP-VAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 212 ~~~a----~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~P-v~v----GfGIst~e~v~~v~~~GADGv 276 (311)
++.+ ..-+++....| . ..|..+.++++.+++.++.+ +-+ .+|...+ +....+++||+.|
T Consensus 160 ~~~a~~aGad~i~i~DTvG---~--~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvA-NslaAv~AGA~~V 227 (526)
T TIGR00977 160 LATAQQAGADWLVLCDTNG---G--TLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVA-NSLLAVEAGATMV 227 (526)
T ss_pred HHHHHhCCCCeEEEecCCC---C--cCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHH-HHHHHHHhCCCEE
Confidence 5542 23456655444 2 35778889999999887654 333 3444443 3445567899876
No 232
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=97.95 E-value=0.00036 Score=70.27 Aligned_cols=179 Identities=21% Similarity=0.250 Sum_probs=114.0
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEE-------
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALF------- 145 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm------- 145 (311)
-..++...++..|+++|++.||++ -|-..+.+ .| +.-++=.+.++.+|+. .+.|+..+
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~w--------GGAtfd~~-~r-----fl~edpwerlr~~r~~~~nt~lqmLlRG~n~v 97 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECW--------GGATFDAC-IR-----FLNEDPWERLRTLKKGLPNTRLQMLLRGQNLL 97 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEec--------CCcchhhh-hc-----ccCCCHHHHHHHHHHhCCCCceeeeecccccc
Confidence 345778999999999999999996 12222222 11 1111224566666654 45676544
Q ss_pred ecCc---chhccCHHHHHHHHHHcCCcEEEecCCChh--hHHHHHHHHHHcCCCeEEEe----CCCChHH----HHHHHH
Q 021527 146 TYYN---PILKRGVDNFMSTVRDIGIRGLVVPDVPLE--ETESLQKEAMKNKIELVLFT----TPTTPTD----RMKAIV 212 (311)
Q Consensus 146 ~Y~n---~i~~~g~~~fi~~~~~aGadGviipDlp~e--e~~~~~~~~~~~gi~~I~li----sp~t~~e----ri~~i~ 212 (311)
+|.| .+ ++.|++.+++.|+|-+-+-|-..+ ..+...+.+++.|......+ +|..+.+ ..+++.
T Consensus 98 gy~~ypddv----v~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~ 173 (468)
T PRK12581 98 GYRHYADDI----VDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELV 173 (468)
T ss_pred CccCCcchH----HHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHH
Confidence 2333 22 257999999999999999886543 35667888899998654333 4544333 334443
Q ss_pred HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 213 EASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 213 ~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
+..-.-||+....|. ..|..+.++++.+|+..++||-+ ..|... .+.-...++|||.|
T Consensus 174 ~~Gad~I~IkDtaG~-----l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~-An~laAieAGad~v 235 (468)
T PRK12581 174 EMGADSICIKDMAGI-----LTPKAAKELVSGIKAMTNLPLIVHTHATSGISQ-MTYLAAVEAGADRI 235 (468)
T ss_pred HcCCCEEEECCCCCC-----cCHHHHHHHHHHHHhccCCeEEEEeCCCCccHH-HHHHHHHHcCCCEE
Confidence 433345666554442 34667889999999987888766 445543 45666778999865
No 233
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=97.95 E-value=0.008 Score=56.95 Aligned_cols=206 Identities=17% Similarity=0.192 Sum_probs=135.5
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+.++..++.+ -++..|=+ .|++...-++++.++.++.+|---.|-.-.+. ..+.+..
T Consensus 4 ~k~ll~~A~~~~-yAV~AfN~---~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~-----------------~~~~~~~ 62 (282)
T TIGR01858 4 TKYMLQDAQAGG-YAVPAFNI---HNLETIQAVVETAAEMRSPVILAGTPGTFKHA-----------------GTEYIVA 62 (282)
T ss_pred HHHHHHHHHHcC-CeEEEEEe---CCHHHHHHHHHHHHHhCCCEEEEeCccHHhhC-----------------CHHHHHH
Confidence 355666655443 45544543 47789999999999999988765433222222 2334456
Q ss_pred HHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE---EEe-
Q 021527 130 MLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV---LFT- 199 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I---~li- 199 (311)
+++.+.++.++||.+-. -+..-.+.+.+|.++|.+.|.+ ..+|+|| ..++.+.++.+|+.+= --+
T Consensus 63 ~~~~~a~~~~VPValHL-----DHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vg 137 (282)
T TIGR01858 63 LCSAASTTYNMPLALHL-----DHHESLDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLG 137 (282)
T ss_pred HHHHHHHHCCCCEEEEC-----CCCCCHHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecC
Confidence 77788888899999853 1222347899999999999988 4688887 6778888988886321 001
Q ss_pred ------------CCCChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCCC
Q 021527 200 ------------TPTTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGISK 261 (311)
Q Consensus 200 ------------sp~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIst 261 (311)
..-|.++..++..+. .|..++ + +..|..-....++ .+.|+++++.+++|++. |.|+.
T Consensus 138 g~e~~~~~~~~~~~~T~peea~~Fv~~-TgvD~LAvaiGt~HG~yk~~p~Ld---f~~L~~I~~~~~iPLVlHGgSG~~- 212 (282)
T TIGR01858 138 GVEDDLSVDEEDALYTDPQEAKEFVEA-TGVDSLAVAIGTAHGLYKKTPKLD---FDRLAEIREVVDVPLVLHGASDVP- 212 (282)
T ss_pred CccCCCccccchhccCCHHHHHHHHHH-HCcCEEecccCccccCcCCCCccC---HHHHHHHHHHhCCCeEEecCCCCC-
Confidence 012333444555442 344454 2 3334332222222 46789999989999866 77886
Q ss_pred HHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 262 PEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 262 ~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.|+++++.+.|.-=|=|+|.+....
T Consensus 213 ~e~~~~ai~~Gi~KiNi~T~l~~a~ 237 (282)
T TIGR01858 213 DEDVRRTIELGICKVNVATELKIAF 237 (282)
T ss_pred HHHHHHHHHcCCeEEEeCcHHHHHH
Confidence 7999999999999999999987543
No 234
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.92 E-value=0.001 Score=61.56 Aligned_cols=180 Identities=19% Similarity=0.285 Sum_probs=112.3
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH--HcCCCHHHHHHHHHHhhccCCCcEEEE---ecCcchhccC
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL--ARGTNFNAILSMLKEVVPQMSCPIALF---TYYNPILKRG 155 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al--~~G~~~~~~~~~i~~ir~~~~iPiilm---~Y~n~i~~~g 155 (311)
-.++.++++|.|++-++ |..+..+. .. ....++++.++.++.|.+..++|++.. +|.|+- .
T Consensus 20 ~sA~~~e~~G~~ai~~s---------~~~~~~s~--G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~---~ 85 (243)
T cd00377 20 LSARLAERAGFKAIYTS---------GAGVAASL--GLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNAL---N 85 (243)
T ss_pred HHHHHHHHcCCCEEEec---------cHHHHHhc--CCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHH---H
Confidence 45667788899999996 33322211 11 012588999999999999899999886 465541 2
Q ss_pred HHHHHHHHHHcCCcEEEec---------------CCChhhHHHHHHHHHH-cC--CCeEEEeC-----C--CChH---HH
Q 021527 156 VDNFMSTVRDIGIRGLVVP---------------DVPLEETESLQKEAMK-NK--IELVLFTT-----P--TTPT---DR 207 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviip---------------Dlp~ee~~~~~~~~~~-~g--i~~I~lis-----p--~t~~---er 207 (311)
..+-++.+.++|++|+.+= =++.||..+-.+.+++ .. -+.++..- . ...+ +|
T Consensus 86 ~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~R 165 (243)
T cd00377 86 VARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIER 165 (243)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHH
Confidence 3456778888999999992 2466775543333333 22 23333321 1 2222 56
Q ss_pred HHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCC-HHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 208 MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISK-PEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 208 i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst-~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.+.+.+..-..+|+.. .+ ..+.++++.+..+.|+.+-..=.. .-.++++.++|..-++.|+.+.+..
T Consensus 166 a~ay~~AGAD~v~v~~---~~---------~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~~~~~~~a 233 (243)
T cd00377 166 AKAYAEAGADGIFVEG---LK---------DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAELGVRRVSYGLALLRAA 233 (243)
T ss_pred HHHHHHcCCCEEEeCC---CC---------CHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHCCCeEEEEChHHHHHH
Confidence 6666555445555542 11 126688888888899877532211 1246677788999999999888754
No 235
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=97.92 E-value=0.0029 Score=59.05 Aligned_cols=195 Identities=19% Similarity=0.264 Sum_probs=121.0
Q ss_pred HHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHH
Q 021527 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSM 130 (311)
Q Consensus 51 ~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~ 130 (311)
...|++.-++|+..+-.++....| ..++.+..+|.|++-|+...+. .+.+++.++
T Consensus 7 ~n~lk~~l~~g~~~~g~~~~~~sp------~~~e~~a~~G~D~v~iD~EHg~-------------------~~~~~~~~~ 61 (256)
T PRK10558 7 PNKFKAALAAKQVQIGCWSALANP------ITTEVLGLAGFDWLVLDGEHAP-------------------NDVSTFIPQ 61 (256)
T ss_pred CHHHHHHHHcCCceEEEEEcCCCc------HHHHHHHhcCCCEEEEccccCC-------------------CCHHHHHHH
Confidence 344544445677777778888888 6778888999999999866532 344555556
Q ss_pred HHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHH---------------------
Q 021527 131 LKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEA--------------------- 188 (311)
Q Consensus 131 i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~--------------------- 188 (311)
+..++. ..++.++-.-.+ -...++.+.+.|++||++|.+- .||++++++.+
T Consensus 62 i~a~~~-~g~~~lVRvp~~------~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~ 134 (256)
T PRK10558 62 LMALKG-SASAPVVRVPTN------EPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGT 134 (256)
T ss_pred HHHHhh-cCCCcEEECCCC------CHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCC
Confidence 665543 445555554333 2357788999999999999764 24444443322
Q ss_pred -----HH--cCCCeEEEeCCCChH--HHHHHHHHhCCc--eEEEE-----ecCCccCCCCCCCchHHHHHHHHhhc---C
Q 021527 189 -----MK--NKIELVLFTTPTTPT--DRMKAIVEASEG--FVYLV-----SSIGVTGARASISGHVQTLLREIKES---S 249 (311)
Q Consensus 189 -----~~--~gi~~I~lisp~t~~--eri~~i~~~a~g--fiY~v-----s~~G~TG~~~~~~~~~~~~l~~vk~~---~ 249 (311)
+. ..+.++..+ .|+. +.+.+|++. .| .+++. ...|..|.. ..+++.+.+.++-+. .
T Consensus 135 ~~~y~~~an~~~~vi~~I--Et~~av~ni~eI~av-~gvd~l~iG~~DLs~slG~~~~~--~~~~v~~a~~~v~~aa~~~ 209 (256)
T PRK10558 135 VPDYFAQSNKNITVLVQI--ESQQGVDNVDAIAAT-EGVDGIFVGPSDLAAALGHLGNA--SHPDVQKAIQHIFARAKAH 209 (256)
T ss_pred hHHHHHHhccccEEEEEE--CCHHHHHHHHHHhCC-CCCcEEEECHHHHHHHcCCCCCC--CCHHHHHHHHHHHHHHHHc
Confidence 11 123344444 4443 667777764 44 45552 233443321 234566666655443 2
Q ss_pred CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 250 TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 250 ~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
++|+ |.-..+++++++..+.|++-+.+|+-..-
T Consensus 210 G~~~--g~~~~~~~~~~~~~~~G~~~v~~~~D~~~ 242 (256)
T PRK10558 210 GKPS--GILAPVEADARRYLEWGATFVAVGSDLGV 242 (256)
T ss_pred CCce--EEcCCCHHHHHHHHHcCCCEEEEchHHHH
Confidence 5664 55567799999999999999999976553
No 236
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.92 E-value=6.5e-05 Score=68.13 Aligned_cols=77 Identities=31% Similarity=0.434 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCc-cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGV-TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~-TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.+.+..+.+.+..-..+|+....+. +|. + ...++++++++.+++|+.+|+||+++|+++++++.|||.|++||+
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~--~---~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~ 104 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGE--P---VNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTA 104 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCC--C---CCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECch
Confidence 3445555554533445677655442 111 1 124689999998899999999999999999999999999999999
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
...
T Consensus 105 ~l~ 107 (234)
T cd04732 105 AVK 107 (234)
T ss_pred HHh
Confidence 875
No 237
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.91 E-value=5e-05 Score=70.30 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+..+...+.....+|++...+..|.. ...+.++++.+.+++|+.+|+||+|.|+++.+++.|||=||+||+.++
T Consensus 34 ~~~a~~~~~~g~~~lhivDLd~a~g~~-----~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~ 108 (243)
T TIGR01919 34 ESAAKWWEQGGAEWIHLVDLDAAFGGG-----NNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALE 108 (243)
T ss_pred HHHHHHHHhCCCeEEEEEECCCCCCCc-----chHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 344555555556679999887755432 124689998888889999999999999999999999999999999776
No 238
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.91 E-value=0.011 Score=56.01 Aligned_cols=205 Identities=18% Similarity=0.217 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++. +-++..|= -.+++...-++++.++.++.+|---.|..-.+. ..+.+.
T Consensus 5 ~~~~~l~~A~~~-~yaV~AfN---~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~-----------------g~~~~~ 63 (284)
T PRK12737 5 STKNMLKKAQAE-GYAVPAFN---IHNLETLQVVVETAAELRSPVILAGTPGTFSYA-----------------GTDYIV 63 (284)
T ss_pred cHHHHHHHHHHc-CceEEEEE---eCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhC-----------------CHHHHH
Confidence 356777776554 34555555 346789999999999999988765433221111 223345
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE---EEe
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV---LFT 199 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I---~li 199 (311)
.+++...++.++||.+.. + +..-.+.+.+|.++|.+.|.+ ..+|+|| ..++.+.++.+|+.+= --+
T Consensus 64 ~~~~~~a~~~~VPValHL--D---H~~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~i 138 (284)
T PRK12737 64 AIAEVAARKYNIPLALHL--D---HHEDLDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRL 138 (284)
T ss_pred HHHHHHHHHCCCCEEEEC--C---CCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 677777778899999853 1 222246889999999999988 4789887 6678888998887421 011
Q ss_pred C-----------C--CChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCC
Q 021527 200 T-----------P--TTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGIS 260 (311)
Q Consensus 200 s-----------p--~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIs 260 (311)
. . -|.++..++..+. .|...+ + +..|..-....++ .+.++++++.+++|++. |.|+.
T Consensus 139 gg~e~~~~~~~~~~~~T~peeA~~Fv~~-TgvD~LAvaiGt~HG~y~~~p~Ld---~~~L~~I~~~~~iPLVlHGgSG~~ 214 (284)
T PRK12737 139 GGQEDDLVVDEKDAMYTNPDAAAEFVER-TGIDSLAVAIGTAHGLYKGEPKLD---FERLAEIREKVSIPLVLHGASGVP 214 (284)
T ss_pred cCccCCcccccccccCCCHHHHHHHHHH-hCCCEEeeccCccccccCCCCcCC---HHHHHHHHHHhCCCEEEeCCCCCC
Confidence 0 0 2334444555553 354444 3 3344332222222 36789999988999866 77876
Q ss_pred CHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 261 KPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 261 t~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.|+++++.+.|.-=+=|+|.+..
T Consensus 215 -~e~~~kai~~Gi~KiNi~T~l~~ 237 (284)
T PRK12737 215 -DEDVKKAISLGICKVNVATELKI 237 (284)
T ss_pred -HHHHHHHHHCCCeEEEeCcHHHH
Confidence 69999999999999999999863
No 239
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=97.91 E-value=0.00073 Score=63.06 Aligned_cols=161 Identities=20% Similarity=0.278 Sum_probs=96.9
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..++.++.+.+.|||+|.+|...+.|-++.-..+. .++.+...++.+++.+++|+-+-+|-
T Consensus 21 ~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~----------E~~rl~~~v~~~~~~~~~plsiDT~~------ 84 (257)
T TIGR01496 21 SVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEE----------ELNRVVPVIKALRDQPDVPISVDTYR------ 84 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHH----------HHHHHHHHHHHHHhcCCCeEEEeCCC------
Confidence 34788899999999999999999877777544211110 11234567777887789999998763
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC---CCC----------hHHHHHHHHH-----hCC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT---PTT----------PTDRMKAIVE-----ASE 216 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis---p~t----------~~eri~~i~~-----~a~ 216 (311)
.+-++.+.++|++- +.|...+...++.+.++++|...|.+-. |.+ .++++....+ ...
T Consensus 85 --~~vi~~al~~G~~i--INsis~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (257)
T TIGR01496 85 --AEVARAALEAGADI--INDVSGGQDPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAA 160 (257)
T ss_pred --HHHHHHHHHcCCCE--EEECCCCCCchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHc
Confidence 34567777789884 5555443344567778999998887643 333 1223221111 123
Q ss_pred c----eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEee
Q 021527 217 G----FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGF 257 (311)
Q Consensus 217 g----fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGf 257 (311)
| -+|+-...|...+ ...+-.+.+.++++|+ .+.|+++|-
T Consensus 161 Gi~~~~iilDPg~gf~ks-~~~~~~~l~~i~~l~~-~~~p~l~G~ 203 (257)
T TIGR01496 161 GVAAERIILDPGIGFGKT-PEHNLELLKHLEEFVA-LGYPLLVGA 203 (257)
T ss_pred CCCHHHEEEECCCCcccC-HHHHHHHHHHHHHHHh-CCCcEEEEe
Confidence 3 3566666664332 1112223344555554 468998764
No 240
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.90 E-value=5.5e-05 Score=69.56 Aligned_cols=77 Identities=17% Similarity=0.275 Sum_probs=59.3
Q ss_pred ChHHHHHHHHH-hCCceEEEEecCCcc-CCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 203 TPTDRMKAIVE-ASEGFVYLVSSIGVT-GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 203 t~~eri~~i~~-~a~gfiY~vs~~G~T-G~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
.|.+..+.+.+ ..-..+|++...+.- |. + ...+.++++.+.+++|+.+|+||+|.|+++++++.|||=|||||
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~----~-~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt 106 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAKAQH----A-REFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGT 106 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECcccccCC----c-chHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECc
Confidence 45565555544 234568888876642 22 1 23467999988889999999999999999999999999999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
+..+
T Consensus 107 ~a~~ 110 (234)
T PRK13587 107 KGIQ 110 (234)
T ss_pred hHhc
Confidence 8875
No 241
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=97.90 E-value=0.0038 Score=58.06 Aligned_cols=190 Identities=19% Similarity=0.255 Sum_probs=118.7
Q ss_pred HHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 021527 56 RLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVV 135 (311)
Q Consensus 56 ~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir 135 (311)
+.-++|+..+-.++..+.| ..++.+..+|.|++-|+...+- .+.+++.+++..++
T Consensus 5 ~~l~~g~~~~G~~~~~~sp------~~~e~~a~~G~D~v~iD~EHg~-------------------~~~~~~~~~~~a~~ 59 (249)
T TIGR03239 5 QDLLARETLIGCWSALGNP------ITTEVLGLAGFDWLLLDGEHAP-------------------NDVLTFIPQLMALK 59 (249)
T ss_pred HHHHcCCceEEEEEcCCCc------HHHHHHHhcCCCEEEEecccCC-------------------CCHHHHHHHHHHHh
Confidence 3334577778788888888 6778888999999999865531 34555556666655
Q ss_pred ccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCCh-hhHHHHHHHH--------------------------
Q 021527 136 PQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL-EETESLQKEA-------------------------- 188 (311)
Q Consensus 136 ~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~-ee~~~~~~~~-------------------------- 188 (311)
. ..++.++-.-+| -...++++.+.|++||++|.+-- ||++++++.+
T Consensus 60 ~-~g~~~~VRvp~~------~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~ 132 (249)
T TIGR03239 60 G-SASAPVVRPPWN------EPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYF 132 (249)
T ss_pred h-cCCCcEEECCCC------CHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHH
Confidence 3 344445544333 23567889999999999997642 4444444222
Q ss_pred HHc--CCCeEEEeCCCChH--HHHHHHHHhCCc--eEEEE-----ecCCccCCCCCCCchHHHHHHHHhhc---CCCcEE
Q 021527 189 MKN--KIELVLFTTPTTPT--DRMKAIVEASEG--FVYLV-----SSIGVTGARASISGHVQTLLREIKES---STKPVA 254 (311)
Q Consensus 189 ~~~--gi~~I~lisp~t~~--eri~~i~~~a~g--fiY~v-----s~~G~TG~~~~~~~~~~~~l~~vk~~---~~~Pv~ 254 (311)
+.. .+.++.++ .|+. +.+.+|++. .| .+++. ...|..|.. ..+++.+.++++-+. .++|+
T Consensus 133 ~~~n~~~~vi~~I--Et~~av~n~~eI~av-~gvd~l~iG~~DLs~slG~~~~~--~~~~v~~a~~~v~~aa~a~G~~~- 206 (249)
T TIGR03239 133 ATINDNITVLVQI--ESQKGVDNVDEIAAV-DGVDGIFVGPSDLAAALGHLGNP--NHPDVQKAIRHIFDRAAAHGKPC- 206 (249)
T ss_pred HHhccccEEEEEE--CCHHHHHhHHHHhCC-CCCCEEEEChHHHHHHcCCCCCC--CCHHHHHHHHHHHHHHHHcCCCE-
Confidence 111 22333444 4443 667777764 44 45553 134444432 235566666665443 25664
Q ss_pred EeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 255 VGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 255 vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|.-..+++++++..+.|++-+.+|+-..-
T Consensus 207 -g~~~~~~~~~~~~~~~G~~~~~~~~D~~~ 235 (249)
T TIGR03239 207 -GILAPVEADARRYLEWGATFVAVGSDLGV 235 (249)
T ss_pred -EEcCCCHHHHHHHHHcCCCEEEEhHHHHH
Confidence 55557889999999999999999976553
No 242
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=97.90 E-value=0.014 Score=55.33 Aligned_cols=206 Identities=18% Similarity=0.221 Sum_probs=136.7
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+.++..++++ -++..|= -.+++...-++++.++.+..+|----| |. ++. ...+.+..
T Consensus 6 ~k~iL~~A~~~~-yAV~AfN---~~n~e~~~avi~AAee~~sPvIlq~s~-------~~---------~~~-~~~~~~~~ 64 (286)
T PRK12738 6 TKYLLQDAQANG-YAVPAFN---IHNAETIQAILEVCSEMRSPVILAGTP-------GT---------FKH-IALEEIYA 64 (286)
T ss_pred HHHHHHHHHHCC-ceEEEEE---eCCHHHHHHHHHHHHHHCCCEEEEcCc-------ch---------hhh-CCHHHHHH
Confidence 466676665543 4554444 346889999999999999988765311 21 111 23444566
Q ss_pred HHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE---EEe-
Q 021527 130 MLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV---LFT- 199 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I---~li- 199 (311)
+++.+.++.++||.+-. -+....+.+..|.++|.+.|.+ ..+|+|| ..++.+.++.+|+.+= --+
T Consensus 65 ~~~~~a~~~~VPValHL-----DHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~ig 139 (286)
T PRK12738 65 LCSAYSTTYNMPLALHL-----DHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLG 139 (286)
T ss_pred HHHHHHHHCCCCEEEEC-----CCCCCHHHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeC
Confidence 78888888899999853 2222356888999999999988 4789887 6778888988887321 001
Q ss_pred --------CC----CChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCCC
Q 021527 200 --------TP----TTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGISK 261 (311)
Q Consensus 200 --------sp----~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIst 261 (311)
.. -|.++..++..+. .|...+ + +..|.+-....+ ..+.++++++.+++|++. |.|+.
T Consensus 140 g~ed~~~~~~~~~~~T~peea~~Fv~~-TgvD~LAvaiGt~HG~Y~~~p~L---dfd~l~~I~~~~~vPLVLHGgSG~~- 214 (286)
T PRK12738 140 GVEDDMSVDAESAFLTDPQEAKRFVEL-TGVDSLAVAIGTAHGLYSKTPKI---DFQRLAEIREVVDVPLVLHGASDVP- 214 (286)
T ss_pred CccCCcccccchhcCCCHHHHHHHHHH-hCCCEEEeccCcccCCCCCCCcC---CHHHHHHHHHHhCCCEEEeCCCCCC-
Confidence 00 2334555555553 344444 2 344433222122 246799999999999866 77887
Q ss_pred HHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 262 PEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 262 ~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.|+++++.+.|.-=|=|+|.+....
T Consensus 215 ~e~~~kai~~GI~KiNi~T~l~~a~ 239 (286)
T PRK12738 215 DEFVRRTIELGVTKVNVATELKIAF 239 (286)
T ss_pred HHHHHHHHHcCCeEEEeCcHHHHHH
Confidence 7999999999999999999887654
No 243
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.89 E-value=6.9e-05 Score=68.74 Aligned_cols=77 Identities=22% Similarity=0.293 Sum_probs=55.8
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
+.+.++.+.+..-..+|+....+ -|... +...++++++++.+++||++++||++.++++++++.|+|+|++|+++.
T Consensus 29 ~~~~a~~~~~~G~~~i~i~d~~~-~~~~~---~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~ 104 (243)
T cd04731 29 PVELAKRYNEQGADELVFLDITA-SSEGR---ETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAV 104 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCc-ccccC---cccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhh
Confidence 34555555444445556654332 11111 123478999999889999999999999999999999999999999987
Q ss_pred c
Q 021527 284 K 284 (311)
Q Consensus 284 ~ 284 (311)
+
T Consensus 105 ~ 105 (243)
T cd04731 105 E 105 (243)
T ss_pred h
Confidence 6
No 244
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=97.89 E-value=0.00019 Score=69.71 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHCCCCEEEEcC-----------CCCCCCCC--hHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEE
Q 021527 78 TTAEALKLLDSCGSDIIELGV-----------PYSDPLAD--GPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIAL 144 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~-----------PfsDP~aD--Gp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiil 144 (311)
.+.+.++.+.++|.|+|||-. |.++---| |-.+.+ +.+-.+++++.||+.+..++.+
T Consensus 138 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslen----------R~r~~~eiv~aIR~~vG~d~~v 207 (353)
T cd02930 138 DFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFEN----------RMRFPVEIVRAVRAAVGEDFII 207 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHH----------HhHHHHHHHHHHHHHcCCCceE
Confidence 578888899999999999942 32222122 111111 1344577888889876544444
Q ss_pred EecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEec
Q 021527 145 FTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSS 224 (311)
Q Consensus 145 m~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~ 224 (311)
..-.| ..++. -.....+|..++.+.+.++|++.+-+.. ...+++...
T Consensus 208 ~iRi~------~~D~~------------~~g~~~~e~~~i~~~Le~~G~d~i~vs~-g~~e~~~~~-------------- 254 (353)
T cd02930 208 IYRLS------MLDLV------------EGGSTWEEVVALAKALEAAGADILNTGI-GWHEARVPT-------------- 254 (353)
T ss_pred EEEec------ccccC------------CCCCCHHHHHHHHHHHHHcCCCEEEeCC-CcCCCCCcc--------------
Confidence 32222 11100 0113456777788888888888775421 111111000
Q ss_pred CCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 225 IGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 225 ~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.... .......+..+++|+.+++||++++++.+++++.++++.| +|.|-+|-+++.
T Consensus 255 ---~~~~-~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~ 311 (353)
T cd02930 255 ---IATS-VPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred ---cccc-CCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH
Confidence 0000 0011124567889999999999999999999999999876 999999987765
No 245
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=97.89 E-value=0.00053 Score=63.37 Aligned_cols=198 Identities=20% Similarity=0.336 Sum_probs=118.3
Q ss_pred HHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-H-cCCCHHHHHHHH
Q 021527 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-A-RGTNFNAILSML 131 (311)
Q Consensus 54 f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~-~G~~~~~~~~~i 131 (311)
|+++.++++..++| |--| .--++.++++|.+.+-.. |--+..+. -+ . .-.++++.++.+
T Consensus 1 fr~L~~~~~~l~~p----~~~D----~~SAr~~e~~Gf~ai~~s---------g~~~a~s~--G~pD~~~lt~~e~~~~~ 61 (238)
T PF13714_consen 1 FRQLHEPGKPLVLP----NVWD----ALSARLAERAGFDAIATS---------GAGVAASL--GYPDGGLLTLTEMLAAV 61 (238)
T ss_dssp HHHHHHSSSSEEEE----EESS----HHHHHHHHHTT-SEEEEH---------HHHHHHHT--TS-SSS-S-HHHHHHHH
T ss_pred ChhhhcCCCcEEeC----CCcC----HHHHHHHHHcCCCEEEec---------hHHHHHHc--CCCCCCCCCHHHHHHHH
Confidence 44555565554433 3233 244667788899999885 43332211 11 0 125888999999
Q ss_pred HHhhccCCCcEEEE---ecCc-chhccCHHHHHHHHHHcCCcEEEecCC----------ChhhHHH-HHHHHHHc-CCCe
Q 021527 132 KEVVPQMSCPIALF---TYYN-PILKRGVDNFMSTVRDIGIRGLVVPDV----------PLEETES-LQKEAMKN-KIEL 195 (311)
Q Consensus 132 ~~ir~~~~iPiilm---~Y~n-~i~~~g~~~fi~~~~~aGadGviipDl----------p~ee~~~-~~~~~~~~-gi~~ 195 (311)
++|...+++|+++. ||-| +. ++.+.++.+.++|+.|+.+-|- |.||..+ ++...+.. +.+.
T Consensus 62 ~~I~~~~~iPv~vD~d~GyG~~~~---~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~ 138 (238)
T PF13714_consen 62 RRIARAVSIPVIVDADTGYGNDPE---NVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDF 138 (238)
T ss_dssp HHHHHHSSSEEEEE-TTTSSSSHH---HHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTS
T ss_pred HHHHhhhcCcEEEEcccccCchhH---HHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeE
Confidence 99999999999998 5766 32 3467889999999999999887 6666433 33333222 2333
Q ss_pred EEEeCCCC---h-------HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHH
Q 021527 196 VLFTTPTT---P-------TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHV 265 (311)
Q Consensus 196 I~lisp~t---~-------~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v 265 (311)
++..=-.+ . .+|.+.+.+..-..+|... . .+ .+.++++.+..+.|+.+-.+-.+ -++
T Consensus 139 ~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~---~--------~~-~~~i~~~~~~~~~Pl~v~~~~~~-~~~ 205 (238)
T PF13714_consen 139 VIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPG---L--------QS-EEEIERIVKAVDGPLNVNPGPGT-LSA 205 (238)
T ss_dssp EEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETT---S--------SS-HHHHHHHHHHHSSEEEEETTSSS-S-H
T ss_pred EEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCC---C--------CC-HHHHHHHHHhcCCCEEEEcCCCC-CCH
Confidence 33221111 1 2566666665445555431 1 11 13366665555789877665323 568
Q ss_pred HHHHHcCCcEEEEhhHhhchh
Q 021527 266 QQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 266 ~~v~~~GADGvIVGSaiv~~~ 286 (311)
+++.++|..-|+.|+.+.+..
T Consensus 206 ~eL~~lGv~~v~~~~~~~~aa 226 (238)
T PF13714_consen 206 EELAELGVKRVSYGNSLLRAA 226 (238)
T ss_dssp HHHHHTTESEEEETSHHHHHH
T ss_pred HHHHHCCCcEEEEcHHHHHHH
Confidence 889999999999999998854
No 246
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=97.89 E-value=0.0054 Score=55.54 Aligned_cols=189 Identities=18% Similarity=0.187 Sum_probs=108.8
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHH
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNF 159 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~f 159 (311)
.+.++.+.+.|+|++=+-+.-..|- -++.+..-++.+.++.. -.||.++. | -..+..
T Consensus 13 ~eda~~~~~~Gad~iGfI~~~~S~R----------------~V~~~~a~~i~~~~~~~-i~~VgVf~--~----~~~~~i 69 (210)
T PRK01222 13 PEDAEAAAELGADAIGFVFYPKSPR----------------YVSPEQAAELAAALPPF-VKVVGVFV--N----ASDEEI 69 (210)
T ss_pred HHHHHHHHHcCCCEEEEccCCCCCC----------------cCCHHHHHHHHHhCCCC-CCEEEEEe--C----CCHHHH
Confidence 5788899999999987753222221 13333333344443322 23566654 2 234556
Q ss_pred HHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCc--eEEEEecC---CccCCCCC
Q 021527 160 MSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEG--FVYLVSSI---GVTGARAS 233 (311)
Q Consensus 160 i~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~g--fiY~vs~~---G~TG~~~~ 233 (311)
.+.+.+.+.|.|=++ |.+.++...++. ..+++.+..+......+ +....+.... ++.+-+.. |.||..
T Consensus 70 ~~~~~~~~~d~vQLHg~e~~~~~~~l~~---~~~~~iik~i~v~~~~~-l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~-- 143 (210)
T PRK01222 70 DEIVETVPLDLLQLHGDETPEFCRQLKR---RYGLPVIKALRVRSAGD-LEAAAAYYGDADGLLLDAYVGLPGGTGKT-- 143 (210)
T ss_pred HHHHHhcCCCEEEECCCCCHHHHHHHHh---hcCCcEEEEEecCCHHH-HHHHHhhhccCCEEEEcCCCCCCCCCCCc--
Confidence 677788999999887 444444443432 34667665554433222 2222222222 33333332 555542
Q ss_pred CCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHhh
Q 021527 234 ISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 234 ~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (311)
.+.. .+. ++ .+.|+++++||+ |||+.++... +.+||=|-|.+...- .....+++++|++.++.+
T Consensus 144 ~dw~---~l~--~~-~~~p~~LAGGi~-peNv~~ai~~~~p~gvDvsSgvE~~~-----G~KD~~ki~~f~~~~~~~ 208 (210)
T PRK01222 144 FDWS---LLP--AG-LAKPWILAGGLN-PDNVAEAIRQVRPYGVDVSSGVESAP-----GIKDPEKIRAFIEAVKSA 208 (210)
T ss_pred cchH---Hhh--hc-cCCCEEEECCCC-HHHHHHHHHhcCCCEEEecCceECCC-----CCcCHHHHHHHHHHHHhh
Confidence 2322 231 12 267999999996 9999998864 789999988877421 123568899999988765
No 247
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.89 E-value=0.00028 Score=67.99 Aligned_cols=141 Identities=18% Similarity=0.129 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHH--CCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCcchhc
Q 021527 77 STTAEALKLLDS--CGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILK 153 (311)
Q Consensus 77 ~~~~e~~~~L~~--~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n~i~~ 153 (311)
+...+.++.|.+ .|+|.|-|+ .++|.- +..++++++||+.. +++|+.- |..
T Consensus 107 ~~d~er~~~L~~~~~g~D~iviD------~AhGhs---------------~~~i~~ik~ik~~~P~~~vIaG---NV~-- 160 (346)
T PRK05096 107 DADFEKTKQILALSPALNFICID------VANGYS---------------EHFVQFVAKAREAWPDKTICAG---NVV-- 160 (346)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEE------CCCCcH---------------HHHHHHHHHHHHhCCCCcEEEe---ccc--
Confidence 455677778887 599999998 566622 35578999999874 6776653 322
Q ss_pred cCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCC
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARAS 233 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~ 233 (311)
..+-++.+.++|||++-+. +.+--.+ +| |+ +||..-+
T Consensus 161 --T~e~a~~Li~aGAD~vKVG------------------IGpGSiC--tT---r~------------------vtGvG~P 197 (346)
T PRK05096 161 --TGEMVEELILSGADIVKVG------------------IGPGSVC--TT---RV------------------KTGVGYP 197 (346)
T ss_pred --CHHHHHHHHHcCCCEEEEc------------------ccCCccc--cC---cc------------------ccccChh
Confidence 2456778889999998554 2111111 22 11 1221101
Q ss_pred CCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 234 ISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 234 ~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
.-..+. .+.+.....++||+..+||++.-|+.+.+.+|||.|-+||-|.-.-+
T Consensus 198 QltAV~-~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~E 250 (346)
T PRK05096 198 QLSAVI-ECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEE 250 (346)
T ss_pred HHHHHH-HHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCccc
Confidence 001122 23344444689999999999999999999999999999999977554
No 248
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=97.86 E-value=0.00035 Score=68.48 Aligned_cols=176 Identities=18% Similarity=0.232 Sum_probs=112.3
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEE-------ec-
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALF-------TY- 147 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm-------~Y- 147 (311)
++.+.++++|++.|...+|+. |-..=.++.|-|.. |=.+.++++|+. .+.|+..+ ||
T Consensus 28 ~DmlPi~e~lD~~G~~slE~W---------GGATFDaciRfLnE-----DPWeRLr~lk~~~~nT~LQMLlRGQNlvGYr 93 (472)
T COG5016 28 EDMLPIAEALDKVGYWSLEVW---------GGATFDACIRFLNE-----DPWERLRELKKAVPNTKLQMLLRGQNLVGYR 93 (472)
T ss_pred HhhHHHHHHHHhcCeeEEEec---------CCccHHHHHHHhcC-----CHHHHHHHHHHhCCCcHHHHHHccCcccccc
Confidence 667899999999999999995 32222233343321 223455666655 35564322 33
Q ss_pred --CcchhccCHHHHHHHHHHcCCcEEEecCCChh--hHHHHHHHHHHcCCCeEEEe----CCCChH----HHHHHHHHhC
Q 021527 148 --YNPILKRGVDNFMSTVRDIGIRGLVVPDVPLE--ETESLQKEAMKNKIELVLFT----TPTTPT----DRMKAIVEAS 215 (311)
Q Consensus 148 --~n~i~~~g~~~fi~~~~~aGadGviipDlp~e--e~~~~~~~~~~~gi~~I~li----sp~t~~----eri~~i~~~a 215 (311)
.+.+ +++|++.+.+.|.|-+=+=|...+ ......+.++++|......+ +|-.+. +..+++++..
T Consensus 94 hyaDDv----Ve~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g 169 (472)
T COG5016 94 HYADDV----VEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMG 169 (472)
T ss_pred CCchHH----HHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcC
Confidence 2333 378999999999999988887644 34556778899998544333 333332 3344454443
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
-.-|.+=...|. -.|...+++++.+|+.+++||.+ -.|++... --+..++|+|++
T Consensus 170 ~DSIciKDmaGl-----ltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~-ylkAvEAGvD~i 228 (472)
T COG5016 170 VDSICIKDMAGL-----LTPYEAYELVKAIKKELPVPVELHTHATSGMAEMT-YLKAVEAGVDGI 228 (472)
T ss_pred CCEEEeeccccc-----CChHHHHHHHHHHHHhcCCeeEEecccccchHHHH-HHHHHHhCcchh
Confidence 333443233332 23556789999999999999987 56887544 446678999987
No 249
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=97.86 E-value=0.0005 Score=66.25 Aligned_cols=139 Identities=16% Similarity=0.224 Sum_probs=92.5
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCCh--HHHHHHHHHhC
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTP--TDRMKAIVEAS 215 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~--~eri~~i~~~a 215 (311)
+++||+-- -+.++ +.++....+.+.|.-+++==.+++|+..++.+..+......+....-+.+ .+|++++.+..
T Consensus 44 ~~iPii~A-nMdtv---~~~~mA~~la~~g~~~~iHk~~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~ 119 (343)
T TIGR01305 44 SGVPIIAA-NMDTV---GTFEMAAALSQHSIFTAIHKHYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAV 119 (343)
T ss_pred eCCceEec-CCCcc---cCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcC
Confidence 57887762 22223 44678888888888887555688888666665433322222332222222 37888887765
Q ss_pred CceEEE--EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEh-----hHhhchhh
Q 021527 216 EGFVYL--VSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVG-----SAMVKLLG 287 (311)
Q Consensus 216 ~gfiY~--vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVG-----Saiv~~~~ 287 (311)
.+..|+ -+..| -...+.+.++++|+..+-+.++.+.|-|+|+++.+.++|||++.|| -...+.+.
T Consensus 120 ~~~d~iviD~AhG-------hs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~ 191 (343)
T TIGR01305 120 PQLKFICLDVANG-------YSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKT 191 (343)
T ss_pred CCCCEEEEECCCC-------cHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeC
Confidence 444444 33333 2345678899999987666768888999999999999999999999 56666553
No 250
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=97.86 E-value=0.0011 Score=62.78 Aligned_cols=105 Identities=13% Similarity=0.248 Sum_probs=72.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..++-++.+.+.|||+|.+|...+-|-++.-..+.- ++-+...|+.+++..++||-+.+|.
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE----------~~Rv~pvI~~l~~~~~~~ISIDT~~------ 99 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEE----------LDRVIPVVEAIAQRFEVWISVDTSK------ 99 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHH----------HHHHHHHHHHHHhcCCCeEEEECCC------
Confidence 457889999999999999999999888885553111111 1234567888887778999998874
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 199 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li 199 (311)
.+-++.+.++|+| ++.|..--.-.+..+.++++|...|++-
T Consensus 100 --~~va~~AL~~Gad--iINDI~g~~d~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 100 --PEVIRESAKAGAH--IINDIRSLSEPGALEAAAETGLPVCLMH 140 (282)
T ss_pred --HHHHHHHHHcCCC--EEEECCCCCCHHHHHHHHHcCCCEEEEc
Confidence 3456778888999 4655421111234456788998877764
No 251
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.85 E-value=0.00016 Score=66.95 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCc-cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGV-TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~-TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.|.+..+.+.+..-..+|++...|. .|.. ...+.++++.+.+ .|+.+|+||++.|+++++++.|||=|||||+
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a~~g~~-----~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~ 104 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKAIENSV-----ENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSK 104 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcccCCc-----chHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECch
Confidence 4556666666644455899987763 2322 2346788888877 7999999999999999999999999999998
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
.++
T Consensus 105 a~~ 107 (241)
T PRK14114 105 VLE 107 (241)
T ss_pred hhC
Confidence 776
No 252
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.83 E-value=9.5e-05 Score=68.84 Aligned_cols=77 Identities=16% Similarity=0.280 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCc-cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGV-TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~-TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
.|.+.++.+.+..-..+|++...+. ++. + ...++++++.+.+++||.+|+||++.++++++++.|+|+++|||+
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~--~---~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~ 105 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGS--E---PNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTA 105 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCC--c---ccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChH
Confidence 4556666665544455777765542 222 2 124688888888899999999999999999999999999999998
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
+.+
T Consensus 106 ~~~ 108 (258)
T PRK01033 106 ALE 108 (258)
T ss_pred Hhc
Confidence 876
No 253
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.83 E-value=8.7e-05 Score=67.82 Aligned_cols=78 Identities=28% Similarity=0.361 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.+.+.++.+.+..-..+|+....+.. .+. ....+.++++.+.+++|+.+|+||++.|+++.++++|||+|++||..
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~---~~~-~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~ 108 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAF---EGE-RKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA 108 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhh---cCC-cccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 34566666555443456666654321 111 12246788888888999999999999999999999999999999988
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 109 ~~ 110 (241)
T PRK13585 109 VE 110 (241)
T ss_pred hh
Confidence 75
No 254
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=97.82 E-value=0.00083 Score=64.76 Aligned_cols=138 Identities=19% Similarity=0.165 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHCC--CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 77 STTAEALKLLDSCG--SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 77 ~~~~e~~~~L~~~G--aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+...+-++.|.++| +|.|-++ .+.|.- +..++.+++||+.+.-+.++-+ |..
T Consensus 106 ~~d~er~~~L~~a~~~~d~iviD------~AhGhs---------------~~~i~~ik~ir~~~p~~~viaG--NV~--- 159 (343)
T TIGR01305 106 DNDLEKMTSILEAVPQLKFICLD------VANGYS---------------EHFVEFVKLVREAFPEHTIMAG--NVV--- 159 (343)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEE------CCCCcH---------------HHHHHHHHHHHhhCCCCeEEEe--ccc---
Confidence 45567888888885 9999998 555621 3457899999988654555544 311
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASI 234 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~ 234 (311)
..+-++.+.++|||++.+.=-| .- ..+| |. ++|.. .
T Consensus 160 -T~e~a~~Li~aGAD~ikVgiGp----------------GS----ictt---R~------------------~~Gvg--~ 195 (343)
T TIGR01305 160 -TGEMVEELILSGADIVKVGIGP----------------GS----VCTT---RT------------------KTGVG--Y 195 (343)
T ss_pred -CHHHHHHHHHcCCCEEEEcccC----------------CC----cccC---ce------------------eCCCC--c
Confidence 2456778888999998664111 10 1111 10 11111 0
Q ss_pred CchHHHHHHHHhh---cCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 235 SGHVQTLLREIKE---SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 235 ~~~~~~~l~~vk~---~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+.+ ..|.++.+ ..++||+..+||++.-|+.+.+.+|||.|-+|+.+.-.-
T Consensus 196 -pql-tAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~ 248 (343)
T TIGR01305 196 -PQL-SAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHT 248 (343)
T ss_pred -CHH-HHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcC
Confidence 111 22333322 347899999999999999999999999999998886544
No 255
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=97.82 E-value=0.026 Score=53.52 Aligned_cols=208 Identities=17% Similarity=0.224 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++. +-++-.|=+ .|++...-++++.++.++.+|---.|-.-.+ ....+.+.
T Consensus 5 ~~~~lL~~A~~~-~yAV~AfN~---~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~----------------~~~~~~~~ 64 (285)
T PRK07709 5 SMKEMLNKALEG-KYAVGQFNM---NNLEWTQAILAAAEEEKSPVILGVSEGAARH----------------MTGFKTVV 64 (285)
T ss_pred cHHHHHHHHHHC-CceEEEEEE---CCHHHHHHHHHHHHHHCCCEEEEcCcchhhh----------------cCCHHHHH
Confidence 456777776555 345655653 4788889999999999999876543322222 11233345
Q ss_pred HHHHHhhccCC--CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE---E
Q 021527 129 SMLKEVVPQMS--CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV---L 197 (311)
Q Consensus 129 ~~i~~ir~~~~--iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I---~ 197 (311)
.+++.+.++.+ +||.+.. -+..-.+.+..+.++|.+.|.+ ..+|+|| ..++.+.++.+|+.+= -
T Consensus 65 ~~~~~~a~~~~~~VPV~lHL-----DHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG 139 (285)
T PRK07709 65 AMVKALIEEMNITVPVAIHL-----DHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELG 139 (285)
T ss_pred HHHHHHHHHcCCCCcEEEEC-----CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 56777766654 8999853 1222346788999999999988 4688887 6778888998887421 0
Q ss_pred Ee-C----------CCChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCC
Q 021527 198 FT-T----------PTTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGIS 260 (311)
Q Consensus 198 li-s----------p~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIs 260 (311)
.+ . .-|.++..++..+.. |...+ + +..|.+-....++ .+.|+++++.+++|++. |.|+.
T Consensus 140 ~igg~ed~~~~~~~~yT~peeA~~Fv~~T-gvD~LAvaiGt~HG~Y~~~p~L~---~~~L~~I~~~~~iPLVLHGgSG~~ 215 (285)
T PRK07709 140 TVGGQEDDVIAEGVIYADPAECKHLVEAT-GIDCLAPALGSVHGPYKGEPNLG---FAEMEQVRDFTGVPLVLHGGTGIP 215 (285)
T ss_pred ccCCccCCcccccccCCCHHHHHHHHHHh-CCCEEEEeecccccCcCCCCccC---HHHHHHHHHHHCCCEEEeCCCCCC
Confidence 11 0 124445555665533 44444 2 4444432222233 36788888888999866 77776
Q ss_pred CHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 261 KPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 261 t~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.|+++++.+.|.-=+=|+|.+....
T Consensus 216 -~e~~~~ai~~Gi~KiNi~T~l~~a~ 240 (285)
T PRK07709 216 -TADIEKAISLGTSKINVNTENQIEF 240 (285)
T ss_pred -HHHHHHHHHcCCeEEEeChHHHHHH
Confidence 6999999999999999999886544
No 256
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.82 E-value=0.019 Score=54.55 Aligned_cols=207 Identities=16% Similarity=0.218 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++. +-++..|=+ .+++...-++++.++.+..+|---.|..-.+ ...+.+.
T Consensus 5 ~~k~iL~~A~~~-~yaV~AfNv---~n~e~~~avi~AAee~~sPvIlq~~~~~~~~-----------------~g~~~~~ 63 (284)
T PRK12857 5 TVAELLKKAEKG-GYAVGAFNC---NNMEIVQAIVAAAEAEKSPVIIQASQGAIKY-----------------AGIEYIS 63 (284)
T ss_pred cHHHHHHHHHHc-CCeEEEEEe---CCHHHHHHHHHHHHHhCCCEEEEechhHhhh-----------------CCHHHHH
Confidence 356777766544 445555553 3668888889999998888876542321111 1233345
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE---EEe
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV---LFT 199 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I---~li 199 (311)
.+++...++.++||.+.. + +....+.+..|.++|.+.|.+ ..+|+|| ..++.+.++.+|+.+= --+
T Consensus 64 ~~~~~~A~~~~VPValHL--D---H~~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~v 138 (284)
T PRK12857 64 AMVRTAAEKASVPVALHL--D---HGTDFEQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKI 138 (284)
T ss_pred HHHHHHHHHCCCCEEEEC--C---CCCCHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeec
Confidence 567777778899999853 1 222246888999999999988 4789887 6678888888886321 001
Q ss_pred ---------CC----CChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCC
Q 021527 200 ---------TP----TTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGIS 260 (311)
Q Consensus 200 ---------sp----~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIs 260 (311)
.. -|.++..++..+.. |...+ + +..|..-....++ .+.++++++.+++|++. |.|+.
T Consensus 139 gg~e~~~~~~~~~~~~T~pe~a~~Fv~~T-gvD~LAvaiGt~HG~y~~~p~Ld---~~~L~~i~~~~~vPLVlHGgSG~~ 214 (284)
T PRK12857 139 GGTEDDITVDEREAAMTDPEEARRFVEET-GVDALAIAIGTAHGPYKGEPKLD---FDRLAKIKELVNIPIVLHGSSGVP 214 (284)
T ss_pred CCccCCCCcccchhhcCCHHHHHHHHHHH-CCCEEeeccCccccccCCCCcCC---HHHHHHHHHHhCCCEEEeCCCCCC
Confidence 00 23445555665533 44333 2 3444332222233 36788898888999866 77776
Q ss_pred CHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 261 KPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 261 t~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.|+++++.+.|.-=+=|+|.+....
T Consensus 215 -~e~~~~ai~~Gi~KiNi~T~~~~a~ 239 (284)
T PRK12857 215 -DEAIRKAISLGVRKVNIDTNIREAF 239 (284)
T ss_pred -HHHHHHHHHcCCeEEEeCcHHHHHH
Confidence 7999999999999999999986544
No 257
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.82 E-value=9e-05 Score=67.99 Aligned_cols=77 Identities=26% Similarity=0.293 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.|.+..+.+.+..-..+|++...+..|. +...+.++++.+.+.+|+.+|+||++.|++++++++||+=||+||..
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~-----~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~ 110 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGR-----GDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTET 110 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCC-----CccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEccee
Confidence 4566777776655566899887764332 12246788888888899999999999999999999999999999987
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 111 ~~ 112 (233)
T cd04723 111 LP 112 (233)
T ss_pred cc
Confidence 65
No 258
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.81 E-value=5.6e-05 Score=69.19 Aligned_cols=78 Identities=27% Similarity=0.417 Sum_probs=60.1
Q ss_pred CChHHHHHHHHHhCCceEEEEecCCcc-CCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 202 TTPTDRMKAIVEASEGFVYLVSSIGVT-GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 202 ~t~~eri~~i~~~a~gfiY~vs~~G~T-G~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
..|.+..+.+.+..-..+|++...+.. |. +...+.++++.+.+.+|+.+|+||++.|+++++++.|||-||+||
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~-----~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt 103 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKEGR-----GSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGT 103 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCCTH-----HHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcccCc-----hhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeCh
Confidence 455666777755566778998876542 32 234578999999989999999999999999999999999999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
+..+
T Consensus 104 ~~~~ 107 (229)
T PF00977_consen 104 EALE 107 (229)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9876
No 259
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=97.80 E-value=0.0044 Score=58.48 Aligned_cols=202 Identities=19% Similarity=0.288 Sum_probs=126.5
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-H-cCCCHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-A-RGTNFNAI 127 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~-~G~~~~~~ 127 (311)
....|.++.+++...+ ++|-=| .-.++.++++|...+=++ |--+..+ ..+ . +-.+++++
T Consensus 6 ~~~~fR~l~~~~~~~~----~pg~~d----~~sA~la~~aGF~al~~s---------g~~vA~s--lG~pD~~~~t~~e~ 66 (289)
T COG2513 6 PGAAFRALHASGDPLV----LPGAWD----AGSALLAERAGFKALYLS---------GAGVAAS--LGLPDLGITTLDEV 66 (289)
T ss_pred HHHHHHHHHhCCCCEE----ecCCcC----HHHHHHHHHcCCeEEEec---------cHHHHHh--cCCCccccccHHHH
Confidence 4567877777766544 344222 245677789999999885 4333321 111 1 22578999
Q ss_pred HHHHHHhhccCCCcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecCC---------------ChhhHHHHHHHHH
Q 021527 128 LSMLKEVVPQMSCPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPDV---------------PLEETESLQKEAM 189 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipDl---------------p~ee~~~~~~~~~ 189 (311)
++.+++|...+++||++. ||-|+. ...+-++.+.++|+.|+.+=|- +++|...-.+.++
T Consensus 67 ~~~vrrI~~a~~lPv~vD~dtGfG~~~---nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~ 143 (289)
T COG2513 67 LADARRITDAVDLPVLVDIDTGFGEAL---NVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAV 143 (289)
T ss_pred HHHHHHHHhhcCCceEEeccCCCCcHH---HHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHH
Confidence 999999999999999998 566633 4578889999999999999552 2244333333333
Q ss_pred HcC--CCeEEEeCC---------CChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE---
Q 021527 190 KNK--IELVLFTTP---------TTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV--- 255 (311)
Q Consensus 190 ~~g--i~~I~lisp---------~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--- 255 (311)
+.- .+.++ +.- ....+|.+.+.+..-..||..... . .+.++++.+..++|+.+
T Consensus 144 ~a~~~~~fvi-~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al~----------~--~e~i~~f~~av~~pl~~N~t 210 (289)
T COG2513 144 EARRDPDFVI-IARTDALLVEGLDDAIERAQAYVEAGADAIFPEALT----------D--LEEIRAFAEAVPVPLPANIT 210 (289)
T ss_pred HhccCCCeEE-EeehHHHHhccHHHHHHHHHHHHHcCCcEEccccCC----------C--HHHHHHHHHhcCCCeeeEee
Confidence 322 23333 221 111367777766666667765321 1 24566666665544433
Q ss_pred eeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 256 GFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 256 GfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
-||-+-.-.+.++.+.|..-|+.|....+..
T Consensus 211 ~~g~tp~~~~~~L~~~Gv~~V~~~~~~~raa 241 (289)
T COG2513 211 EFGKTPLLTVAELAELGVKRVSYGLTAFRAA 241 (289)
T ss_pred ccCCCCCcCHHHHHhcCceEEEECcHHHHHH
Confidence 5666444457788899999999998887754
No 260
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=97.80 E-value=0.00066 Score=69.08 Aligned_cols=168 Identities=15% Similarity=0.186 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--------C-CcEEEEec
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--------S-CPIALFTY 147 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--------~-iPiilm~Y 147 (311)
++-+++++.|++.|+|.||+|+|-..| .. ++.++++.+.. . .|.+ .+
T Consensus 106 eeKi~Ia~~L~~~GVd~IEvG~Pa~s~-----~e-----------------~e~i~~i~~~~~~~~~~~~~l~~~i-~a- 161 (503)
T PLN03228 106 PQKLEIARQLAKLRVDIMEVGFPGSSE-----EE-----------------FEAVKTIAKTVGNEVDEETGYVPVI-CG- 161 (503)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCH-----HH-----------------HHHHHHHHHhcccccccccccceEE-ee-
Confidence 678999999999999999999986443 11 22333433211 1 1322 22
Q ss_pred CcchhccCHHHHHHHHHHc----CCcEEEec----CCC------------hhhHHHHHHHHHHcCCCeEEEeCC---CCh
Q 021527 148 YNPILKRGVDNFMSTVRDI----GIRGLVVP----DVP------------LEETESLQKEAMKNKIELVLFTTP---TTP 204 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~a----GadGviip----Dlp------------~ee~~~~~~~~~~~gi~~I~lisp---~t~ 204 (311)
|... ..+.++.+.++ |++.+.+. |+- ++...+..+.++++|+..+.+..+ .++
T Consensus 162 ~~R~----~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd 237 (503)
T PLN03228 162 IARC----KKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSD 237 (503)
T ss_pred eccc----CHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccC
Confidence 2211 23355555555 55656542 222 122456777889999864444322 233
Q ss_pred HHHHHHHHHh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC----CCcEEE----eeCCCCHHHHHHHHHcC
Q 021527 205 TDRMKAIVEA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESS----TKPVAV----GFGISKPEHVQQVAGWG 272 (311)
Q Consensus 205 ~eri~~i~~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~----~~Pv~v----GfGIst~e~v~~v~~~G 272 (311)
.+.+.++++. ...-+++....| . ..|..+.++++.+++.+ ++|+-+ .+|...++.+ ..+++|
T Consensus 238 ~efl~~~~~~a~~~Gad~I~l~DTvG---~--~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANsl-aAi~aG 311 (503)
T PLN03228 238 KEFLCKILGEAIKAGATSVGIADTVG---I--NMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTI-AGICAG 311 (503)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCC---C--CCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHH-HHHHhC
Confidence 4554444433 223455555443 3 34677889999998865 255544 4566554444 445799
Q ss_pred CcEEEE
Q 021527 273 ADGVIV 278 (311)
Q Consensus 273 ADGvIV 278 (311)
||.|-+
T Consensus 312 a~~Vd~ 317 (503)
T PLN03228 312 ARQVEV 317 (503)
T ss_pred CCEEEE
Confidence 998843
No 261
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=97.80 E-value=0.0015 Score=67.78 Aligned_cols=182 Identities=16% Similarity=0.147 Sum_probs=112.8
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEe------
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFT------ 146 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~------ 146 (311)
-..++..+++..|+++|++.||++-. -.... +.| +--++-++.++++++. .++++..+.
T Consensus 23 ~~t~d~l~ia~~l~~~G~~~iE~~gg--------atfd~-~~r-----fl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~ 88 (592)
T PRK09282 23 MRTEDMLPIAEKLDKVGFWSLEVWGG--------ATFDV-CIR-----YLNEDPWERLRKLKKALPNTPLQMLLRGQNLV 88 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCC--------ccchh-hcc-----cCCccHHHHHHHHHHhCCCCEEEEEecccccc
Confidence 44577899999999999999999711 00000 000 0111335667777765 467776652
Q ss_pred -cCcchhccCHHHHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCCCeEEEe----CCCChHHHH----HHHHHhC
Q 021527 147 -YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKIELVLFT----TPTTPTDRM----KAIVEAS 215 (311)
Q Consensus 147 -Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi~~I~li----sp~t~~eri----~~i~~~a 215 (311)
|.| .-..-.+.|++.+.++|+|.+-+.|-.. +......+.++++|......+ +|..+.+.. +++.+..
T Consensus 89 gy~~-ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~G 167 (592)
T PRK09282 89 GYRH-YPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMG 167 (592)
T ss_pred cccc-ccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC
Confidence 222 1111147899999999999988876442 345667788889998654333 343334443 3333333
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
-..|++-...| . ..|..+.++++.+|+.+++||-+ .+|... .+.-...++|||.|
T Consensus 168 ad~I~i~Dt~G---~--~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~-An~laAv~aGad~v 226 (592)
T PRK09282 168 CDSICIKDMAG---L--LTPYAAYELVKALKEEVDLPVQLHSHCTSGLAP-MTYLKAVEAGVDII 226 (592)
T ss_pred CCEEEECCcCC---C--cCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHH-HHHHHHHHhCCCEE
Confidence 34455554443 3 34677899999999988888766 455543 45666778999865
No 262
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.79 E-value=0.015 Score=55.21 Aligned_cols=207 Identities=15% Similarity=0.219 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++. +-++..|=+ .+++...-++++.++.+..+|---.|-.-.+ ...+.+.
T Consensus 5 ~~k~il~~A~~~-~yaV~AfN~---~n~e~~~avi~AAee~~sPvIiq~~~~~~~~-----------------~g~~~~~ 63 (284)
T PRK09195 5 STKQMLNNAQRG-GYAVPAFNI---HNLETMQVVVETAAELHSPVIIAGTPGTFSY-----------------AGTEYLL 63 (284)
T ss_pred cHHHHHHHHHHc-CceEEEEEe---CCHHHHHHHHHHHHHhCCCEEEEcChhHHhh-----------------CCHHHHH
Confidence 356667666555 345655553 4678888899999999988876532221111 2234456
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE---EEe
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV---LFT 199 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I---~li 199 (311)
.+++.+.++.++||.+-. + +....+.+..|.++|.+.|.+ ..+|+|| ..++.+.++.+|+.+= --+
T Consensus 64 ~~~~~~A~~~~VPV~lHL--D---Hg~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~v 138 (284)
T PRK09195 64 AIVSAAAKQYHHPLALHL--D---HHEKFDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRL 138 (284)
T ss_pred HHHHHHHHHCCCCEEEEC--C---CCCCHHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 788888888999999853 2 222346889999999999988 4789887 6678888888886321 001
Q ss_pred C-----------C--CChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCC
Q 021527 200 T-----------P--TTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGIS 260 (311)
Q Consensus 200 s-----------p--~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIs 260 (311)
. . -|.++..++..+. .|...+ + +..|.+-....++ .+.|+++++.+++|++. |.|+.
T Consensus 139 gg~e~~~~~~~~~~~~T~peea~~Fv~~-TgvD~LAvaiGt~HG~y~~~p~Ld---~~~L~~I~~~~~vPLVLHGgSG~~ 214 (284)
T PRK09195 139 GGQEDDLQVDEADALYTDPAQAREFVEA-TGIDSLAVAIGTAHGMYKGEPKLD---FDRLENIRQWVNIPLVLHGASGLP 214 (284)
T ss_pred cCcccCcccccccccCCCHHHHHHHHHH-HCcCEEeeccCccccccCCCCcCC---HHHHHHHHHHhCCCeEEecCCCCC
Confidence 0 0 2334555555553 344444 2 3344332222233 36788898888999866 77887
Q ss_pred CHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 261 KPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 261 t~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.|+++++.+.|.-=|=|+|.+....
T Consensus 215 -~e~~~~ai~~Gi~KiNi~T~l~~a~ 239 (284)
T PRK09195 215 -TKDIQQTIKLGICKVNVATELKIAF 239 (284)
T ss_pred -HHHHHHHHHcCCeEEEeCcHHHHHH
Confidence 6999999999999999999987433
No 263
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=97.79 E-value=0.0033 Score=57.02 Aligned_cols=190 Identities=20% Similarity=0.272 Sum_probs=111.8
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
..+.++...++|+|.+=+-+--..| +-++.++.-+++..+.+ + ..+.++ .| -..++
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~Sp----------------R~Vs~~~a~~i~~~v~~-~-~~VgVf--~n----~~~~~ 66 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSP----------------RYVSPEQAREIASAVPK-V-KVVGVF--VN----ESIEE 66 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCC----------------CcCCHHHHHHHHHhCCC-C-CEEEEE--CC----CCHHH
Confidence 4688999999999998664322222 12455443344444433 1 134443 34 12344
Q ss_pred HHHHHHHcCCcEEEec-CCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEec-----CCccCCCC
Q 021527 159 FMSTVRDIGIRGLVVP-DVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSS-----IGVTGARA 232 (311)
Q Consensus 159 fi~~~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~-----~G~TG~~~ 232 (311)
..+.+.+.+.|.|=++ |.+.+...+++... ++..+..++.....+..........-..|+... .|.||..
T Consensus 67 i~~i~~~~~ld~VQlHG~e~~~~~~~l~~~~---~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~- 142 (208)
T COG0135 67 ILEIAEELGLDAVQLHGDEDPEYIDQLKEEL---GVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQT- 142 (208)
T ss_pred HHHHHHhcCCCEEEECCCCCHHHHHHHHhhc---CCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcE-
Confidence 5566788889998886 56666555555433 566555544333212111111222333444443 4677753
Q ss_pred CCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCC-cEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 233 SISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGA-DGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 233 ~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GA-DGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
++.. .+... ....|++..+|++ |+|+.++.+.+. .|+=|-|.+...-+ ....+.+++|++.++.
T Consensus 143 -fDW~---~l~~~--~~~~~~~LAGGL~-p~NV~~ai~~~~p~gvDvSSGVE~~pG-----~KD~~kv~~f~~~vk~ 207 (208)
T COG0135 143 -FDWN---LLPKL--RLSKPVMLAGGLN-PDNVAEAIALGPPYGVDVSSGVESSPG-----IKDPAKVKAFFEAVKR 207 (208)
T ss_pred -ECHH---Hhccc--cccCCEEEECCCC-HHHHHHHHHhcCCceEEeccccccCCC-----CCCHHHHHHHHHHHhc
Confidence 4443 23322 2467899999996 999999999988 99988887766321 2346788888888775
No 264
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.79 E-value=0.00061 Score=62.32 Aligned_cols=182 Identities=23% Similarity=0.294 Sum_probs=108.0
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
|..||+.+...+.++ .+|.+++-+-+==-+-.. -.-+++++.+... +++ + .-|
T Consensus 23 Tgky~s~~~~~~av~---asg~~ivTvAlRR~~~~~----------------~~~~~~l~~l~~~----~~~--~--LPN 75 (262)
T COG2022 23 TGKYPSPAVLAEAVR---ASGSEIVTVALRRVNATR----------------PGGDGILDLLIPL----GVT--L--LPN 75 (262)
T ss_pred cCCCCCHHHHHHHHH---hcCCceEEEEEEeecccC----------------CCcchHHHHhhhc----CcE--e--CCC
Confidence 667787776665554 589999888311100000 0112344444332 222 2 124
Q ss_pred chhccCHHHHHH---HHHHcCCcEE----EecC----CC-hhhHHHHHHHHHHcCCCeEEEeCCCChH-HHHHHHHHhCC
Q 021527 150 PILKRGVDNFMS---TVRDIGIRGL----VVPD----VP-LEETESLQKEAMKNKIELVLFTTPTTPT-DRMKAIVEASE 216 (311)
Q Consensus 150 ~i~~~g~~~fi~---~~~~aGadGv----iipD----lp-~ee~~~~~~~~~~~gi~~I~lisp~t~~-eri~~i~~~a~ 216 (311)
+--.+..++-++ .+.+++-.-. +++| +| +.|..+-.+.+-+.|+.+.++++++--. +|+++ -
T Consensus 76 TaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee-----~ 150 (262)
T COG2022 76 TAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEE-----A 150 (262)
T ss_pred ccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHh-----c
Confidence 443344454333 3455543322 2333 22 1244445555667799888887765432 33332 4
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
|..-++..-..-|+..++.. ...|+.+++..++||+|.-||-+|.|+.++.++|+|+|.+-||+.+.
T Consensus 151 GcaavMPl~aPIGSg~G~~n--~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A 217 (262)
T COG2022 151 GCAAVMPLGAPIGSGLGLQN--PYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARA 217 (262)
T ss_pred CceEeccccccccCCcCcCC--HHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhcc
Confidence 66556554444455444432 36788888888999999999999999999999999999999999873
No 265
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=97.78 E-value=0.024 Score=53.88 Aligned_cols=207 Identities=17% Similarity=0.223 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++++ -++..|= ..+++...-++++.++.++.+|---.|..-.+.. ..+.+.
T Consensus 5 ~~k~lL~~A~~~~-yAV~AfN---~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~----------------~~~~~~ 64 (286)
T PRK08610 5 SMKEMLIDAKENG-YAVGQYN---LNNLEFTQAILEASQEENAPVILGVSEGAARYMS----------------GFYTVV 64 (286)
T ss_pred cHHHHHHHHHHCC-ceEEEEE---ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcC----------------cHHHHH
Confidence 3567777766554 4555554 4578999999999999999987654332211111 123345
Q ss_pred HHHHHhhccCC--CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE---E
Q 021527 129 SMLKEVVPQMS--CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV---L 197 (311)
Q Consensus 129 ~~i~~ir~~~~--iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I---~ 197 (311)
.+++...++.+ +||.+-. + +..-.+++..+.++|.+.|.+ ..+|+|| ..++.+.++..|+.+= -
T Consensus 65 ~~~~~~A~~~~~~vPV~lHL--D---Hg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG 139 (286)
T PRK08610 65 KMVEGLMHDLNITIPVAIHL--D---HGSSFEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELG 139 (286)
T ss_pred HHHHHHHHHcCCCCCEEEEC--C---CCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 57777666655 8999853 1 222356788999999999988 4688887 5678888888886321 0
Q ss_pred EeC-----------CCChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCC
Q 021527 198 FTT-----------PTTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGIS 260 (311)
Q Consensus 198 lis-----------p~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIs 260 (311)
.+. .-|.++..++..+. .|...+ + +..|.+-....++ .+.++++++.+++|++. |.|+.
T Consensus 140 ~vgg~ed~~~~~~~~yT~peea~~Fv~~-TgvD~LAvaiGt~HG~Y~~~p~Ld---~~~L~~I~~~~~vPLVLHGgSG~~ 215 (286)
T PRK08610 140 TVGGQEDDVVADGIIYADPKECQELVEK-TGIDALAPALGSVHGPYKGEPKLG---FKEMEEIGLSTGLPLVLHGGTGIP 215 (286)
T ss_pred ccCCccCCCCCcccccCCHHHHHHHHHH-HCCCEEEeeccccccccCCCCCCC---HHHHHHHHHHHCCCEEEeCCCCCC
Confidence 110 12444555566553 344444 3 3444332222222 46788888888999866 67776
Q ss_pred CHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 261 KPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 261 t~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.|+++++.+.|.-=+=|+|.+...
T Consensus 216 -~e~~~~ai~~GI~KiNi~T~l~~a 239 (286)
T PRK08610 216 -TKDIQKAIPFGTAKINVNTENQIA 239 (286)
T ss_pred -HHHHHHHHHCCCeEEEeccHHHHH
Confidence 599999999999999999998543
No 266
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.77 E-value=0.00066 Score=68.67 Aligned_cols=127 Identities=20% Similarity=0.205 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCCcEEEecCCCh---hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEE-E--------ec
Q 021527 157 DNFMSTVRDIGIRGLVVPDVPL---EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYL-V--------SS 224 (311)
Q Consensus 157 ~~fi~~~~~aGadGviipDlp~---ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~-v--------s~ 224 (311)
.+-++.+.++|+|.+.+ |... +...++.+.+++...+.-.++..-.+.+-.+.+.+. |+.++ | +.
T Consensus 227 ~~ra~~Lv~aGVd~i~~-D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~--G~d~i~vg~g~Gs~~tt 303 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVI-DTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEA--GANIIKVGVGPGAMCTT 303 (475)
T ss_pred HHHHHHHHHhCCCEEEE-eCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHh--CCCEEEECCcCCccccC
Confidence 35666788899999655 5443 335566777777633322223323334544455443 43333 1 12
Q ss_pred CCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 225 IGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 225 ~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
.++||........+.+..+..++. ++||++.+||+++.|+.+.+.+|||.|.+||.|.-.-+
T Consensus 304 r~~~~~g~~~~~a~~~~~~~~~~~-~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~e 365 (475)
T TIGR01303 304 RMMTGVGRPQFSAVLECAAEARKL-GGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYE 365 (475)
T ss_pred ccccCCCCchHHHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhccccc
Confidence 234443222222344444444554 89999999999999999999999999999999976553
No 267
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=97.77 E-value=0.0044 Score=57.53 Aligned_cols=192 Identities=23% Similarity=0.286 Sum_probs=118.9
Q ss_pred HHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 55 TRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 55 ~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
++.-++|+..+-.++....| ..++.+...|.|.|.|+...+- . +.+++..++...
T Consensus 4 k~~l~~g~~~~g~~~~~~~p------~~~e~~~~~g~D~v~iDlEH~~--~-----------------~~~~~~~~~~a~ 58 (249)
T TIGR02311 4 KQALKEGQPQIGLWLGLADP------YAAEICAGAGFDWLLIDGEHAP--N-----------------DVRTILSQLQAL 58 (249)
T ss_pred HHHHHCCCceEEEEEeCCCc------HHHHHHHhcCCCEEEEeccCCC--C-----------------CHHHHHHHHHHH
Confidence 33334677777778887777 6778888999999999865542 1 223334455444
Q ss_pred hccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHc--C-------------------
Q 021527 135 VPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMKN--K------------------- 192 (311)
Q Consensus 135 r~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~~--g------------------- 192 (311)
+. .....++-.-.+ . ...++.+.+.|++||++|..- .|+++++.+.++-. |
T Consensus 59 ~~-~g~~~~VRv~~~-----~-~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~ 131 (249)
T TIGR02311 59 AP-YPSSPVVRPAIG-----D-PVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPD 131 (249)
T ss_pred Hh-cCCCcEEECCCC-----C-HHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHH
Confidence 32 233455544322 1 237888999999999999763 35666677766511 1
Q ss_pred --------CCeEEEeCCCChH--HHHHHHHHhCCc--eEEEE-----ecCCccCCCCCCCchHHHHHHHHhhcC---CCc
Q 021527 193 --------IELVLFTTPTTPT--DRMKAIVEASEG--FVYLV-----SSIGVTGARASISGHVQTLLREIKESS---TKP 252 (311)
Q Consensus 193 --------i~~I~lisp~t~~--eri~~i~~~a~g--fiY~v-----s~~G~TG~~~~~~~~~~~~l~~vk~~~---~~P 252 (311)
+-++.++ .|+. +.+.+|++. .| .+++. ...|..|.. ..+++.+.++++++.+ .++
T Consensus 132 y~~~~n~~~~vi~~I--Et~~av~n~~eI~a~-~gvd~l~~G~~DLs~slG~~~~~--~~~~~~~a~~~v~~~~~~a~~~ 206 (249)
T TIGR02311 132 YLQQADEEICVLLQV--ETREALDNLEEIAAV-EGVDGVFIGPADLAASMGHLGNP--SHPEVQAAIDDAIERIKAAGKA 206 (249)
T ss_pred HHHHhhhceEEEEEe--cCHHHHHHHHHHHCC-CCCcEEEECHHHHHHhcCCCCCC--CChHHHHHHHHHHHHHHHcCCc
Confidence 1122333 3433 667777763 44 44553 134554432 2345566666666653 343
Q ss_pred EEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 253 VAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 253 v~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
.|.-..++++++...+.|++-+++|+-..-.
T Consensus 207 --~Gi~~~~~~~~~~~~~~G~~~~~~~~D~~~l 237 (249)
T TIGR02311 207 --AGILTADPKLARQYLKLGALFVAVGVDTTLL 237 (249)
T ss_pred --eeecCCCHHHHHHHHHcCCCEEEEchHHHHH
Confidence 4555578999999999999999999765543
No 268
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.76 E-value=0.0028 Score=60.42 Aligned_cols=180 Identities=19% Similarity=0.206 Sum_probs=113.9
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.+.|+|.|-+.--- -+++. .|.++-.++++.+++. -++|++.-+-.|
T Consensus 20 g~vD~~a~~~lv~~li~~Gv~gi~~~Gtt----GE~~~------------Ls~eEr~~v~~~~v~~~~grvpviaG~g~~ 83 (299)
T COG0329 20 GSVDEEALRRLVEFLIAAGVDGLVVLGTT----GESPT------------LTLEERKEVLEAVVEAVGGRVPVIAGVGSN 83 (299)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCC----ccchh------------cCHHHHHHHHHHHHHHHCCCCcEEEecCCC
Confidence 66788999999999999999999884110 01111 3556667777777664 368988876554
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecC-----CChhh-HHHHHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCce
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPD-----VPLEE-TESLQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGF 218 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipD-----lp~ee-~~~~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gf 218 (311)
... ..-+..+.+++.|+||+++.- .+.++ ...|+..+.+.++..+++=.| +.+.+.+.++++ -..+
T Consensus 84 ~t~--eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~-~~ni 160 (299)
T COG0329 84 STA--EAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE-HPNI 160 (299)
T ss_pred cHH--HHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc-CCCE
Confidence 221 123466788999999998831 12244 445777788888887765433 334577776655 3344
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcCCC-cEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESSTK-PVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~-Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
+.+ .-.|| + .+.+.+++..+.. ...+..|-. +.+...+.+|+||+|-|++=+
T Consensus 161 vgi---Kd~~g-------d-~~~~~~~~~~~~~~~f~v~~G~d--~~~~~~~~~G~~G~is~~~N~ 213 (299)
T COG0329 161 VGV---KDSSG-------D-LDRLEEIIAALGDRDFIVLSGDD--ELALPALLLGADGVISVTANV 213 (299)
T ss_pred EEE---EeCCc-------C-HHHHHHHHHhcCccCeeEEeCch--HHHHHHHhCCCCeEEeccccc
Confidence 322 11122 1 2456666665544 677888875 444455559999999887644
No 269
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=97.75 E-value=0.0019 Score=65.58 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=113.1
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEe-------
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFT------- 146 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~------- 146 (311)
..++.+.+++.|+++|++.||++ |...-.++.|-+ + ++=.+.++++|+. .+.|+..+.
T Consensus 25 ~t~d~l~ia~~ld~~G~~siE~~---------GGatfd~~~rfl--~---Edpwerlr~lr~~~~nt~lqmL~Rg~N~vG 90 (499)
T PRK12330 25 AMEDMVGACEDIDNAGYWSVECW---------GGATFDACIRFL--N---EDPWERLRTFRKLMPNSRLQMLLRGQNLLG 90 (499)
T ss_pred CHHHHHHHHHHHHhcCCCEEEec---------CCcchhhhhccc--C---CCHHHHHHHHHHhCCCCeEEEEEcccccCC
Confidence 45778999999999999999997 222111222211 1 1224566666654 567776553
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCCCeEE----EeCCCChHHHHHHHHHh----CC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKIELVL----FTTPTTPTDRMKAIVEA----SE 216 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi~~I~----lisp~t~~eri~~i~~~----a~ 216 (311)
|.+ .-.--.+.|++.+.++|+|.+-+-|-.. +......+.+++.|..... .++|..+.+...++++. .-
T Consensus 91 y~~-y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Ga 169 (499)
T PRK12330 91 YRH-YEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGA 169 (499)
T ss_pred ccC-cchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 332 1111136799999999999998876443 3455667777888874422 23666666664444442 22
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
.-|++... +|. ..|..+.++++.+|+.+ ++||-+ .+|... .+.-...++|||.|
T Consensus 170 d~I~IkDt---aGl--l~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~-An~laAieAGad~v 229 (499)
T PRK12330 170 DSICIKDM---AAL--LKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTL-VSLMKAIEAGVDVV 229 (499)
T ss_pred CEEEeCCC---ccC--CCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHH-HHHHHHHHcCCCEE
Confidence 34555443 333 34667889999999987 688876 445654 45666778999865
No 270
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=97.75 E-value=0.027 Score=53.47 Aligned_cols=210 Identities=19% Similarity=0.279 Sum_probs=134.3
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
.++.+.+++.++++ -++..|= ..+++...-++++.++.+..+|-=-. -..+... ..+.+
T Consensus 3 v~~~~ll~~A~~~~-yAV~AfN---~~n~e~~~avi~AAe~~~sPvIlq~~--------~~~~~~~---------~~~~~ 61 (287)
T PF01116_consen 3 VNMKELLKKAKEGG-YAVPAFN---VYNLETARAVIEAAEELNSPVILQIS--------PSEVKYM---------GLEYL 61 (287)
T ss_dssp HHHHHHHHHHHHHT--BEEEEE----SSHHHHHHHHHHHHHTTS-EEEEEE--------HHHHHHH---------HHHHH
T ss_pred ccHHHHHHHHHHCC-CeEEEEe---eCCHHHHHHHHHHHHHhCCCEEEEcc--------hhhhhhh---------hHHHH
Confidence 35677777776654 4555555 45778999999999999888754320 1111111 23455
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE----
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL---- 197 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~---- 197 (311)
..+++.+.++.++||.+-. + +....+++.+|.+.|.+.|.+ ..+|+|| ..++.+.++.+|+.+=-
T Consensus 62 ~~~~~~~a~~~~vPValHL--D---H~~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~ 136 (287)
T PF01116_consen 62 AAMVKAAAEEASVPVALHL--D---HGKDFEDIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGH 136 (287)
T ss_dssp HHHHHHHHHHSTSEEEEEE--E---EE-SHHHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESB
T ss_pred HHHHHHHHHHcCCCEEeec--c---cCCCHHHHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeee
Confidence 6788888888999998853 1 222256889999999999988 5899987 67788999999864211
Q ss_pred Ee-------C------CCChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEE--ee
Q 021527 198 FT-------T------PTTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESS-TKPVAV--GF 257 (311)
Q Consensus 198 li-------s------p~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~v--Gf 257 (311)
+. . --|.++..++..+.. |.+.+ + +..|.+-.. ..|.-..+.|+++++.+ ++|++. |.
T Consensus 137 i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~T-gvD~LAvaiGt~HG~y~~~-~~p~Ld~~~L~~I~~~~~~iPLVlHGgS 214 (287)
T PF01116_consen 137 IGGKEDGIESEEETESLYTDPEEAKEFVEET-GVDALAVAIGTAHGMYKGG-KKPKLDFDRLKEIREAVPDIPLVLHGGS 214 (287)
T ss_dssp SSSSCTTCSSSTT-TTCSSSHHHHHHHHHHH-TTSEEEE-SSSBSSSBSSS-SSTC--HHHHHHHHHHHHTSEEEESSCT
T ss_pred eeccCCCccccccccccccCHHHHHHHHHHh-CCCEEEEecCccccccCCC-CCcccCHHHHHHHHHhcCCCCEEEECCC
Confidence 00 1 113445555555533 33334 3 233322220 01222347899999999 999877 77
Q ss_pred CCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 258 GISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 258 GIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
|+. .|++++..+.|.-=+=|||.+....
T Consensus 215 G~~-~e~~~~ai~~Gi~KiNi~T~~~~a~ 242 (287)
T PF01116_consen 215 GLP-DEQIRKAIKNGISKINIGTELRRAF 242 (287)
T ss_dssp TS--HHHHHHHHHTTEEEEEESHHHHHHH
T ss_pred CCC-HHHHHHHHHcCceEEEEehHHHHHH
Confidence 776 6999999999999999999988654
No 271
>PRK13753 dihydropteroate synthase; Provisional
Probab=97.74 E-value=0.0026 Score=60.16 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=72.3
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..++-++.+.+.|||+|.+|.+.+-|-++--..+. .++-+...++.+++. .+||-+-+|.
T Consensus 23 ~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~ee----------E~~Rv~pvI~~l~~~-~~~ISIDT~~------ 85 (279)
T PRK13753 23 DPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPAD----------EIRRIAPLLDALSDQ-MHRVSIDSFQ------ 85 (279)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHH----------HHHHHHHHHHHHHhC-CCcEEEECCC------
Confidence 45788999999999999999999999988655210110 112234677777764 6789888874
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT 200 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis 200 (311)
.+-++.+.++||| ++.|+.-....++.+.+.+++...|++-+
T Consensus 86 --~~va~~al~aGad--iINDVsg~~d~~~~~vva~~~~~vVlmH~ 127 (279)
T PRK13753 86 --PETQRYALKRGVG--YLNDIQGFPDPALYPDIAEADCRLVVMHS 127 (279)
T ss_pred --HHHHHHHHHcCCC--EEEeCCCCCchHHHHHHHHcCCCEEEEec
Confidence 3456778899999 46665433334556677888888776544
No 272
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=97.74 E-value=0.04 Score=52.42 Aligned_cols=208 Identities=20% Similarity=0.250 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++++ -++..|=+ .+++...-++++.++.++.+|---.|....+..| .+.+.
T Consensus 5 ~~k~iL~~A~~~~-yAV~AfN~---~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g----------------~~~~~ 64 (288)
T TIGR00167 5 DVKELLQDAKEEG-YAIPAFNI---NNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAG----------------LGAIS 64 (288)
T ss_pred cHHHHHHHHHHCC-ceEEEEEE---CCHHHHHHHHHHHHHHCCCEEEECCcchhhccCC----------------HHHHH
Confidence 3566777765554 45656653 4688999999999999998876543332222122 33445
Q ss_pred HHHHHhhccC--CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE---E
Q 021527 129 SMLKEVVPQM--SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV---L 197 (311)
Q Consensus 129 ~~i~~ir~~~--~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I---~ 197 (311)
.+++...++. ++||.+.. -+..-.+.+.++.++|.+.|.+ ..+|+|| ..++.+.++..|+.+= -
T Consensus 65 ~~~~~~a~~~~~~VPV~lHL-----DHg~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG 139 (288)
T TIGR00167 65 AMVKAMSEAYPYGVPVALHL-----DHGASEEDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELG 139 (288)
T ss_pred HHHHHHHHhccCCCcEEEEC-----CCCCCHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 5666666666 89999853 1222357899999999999988 4688887 5678888888887421 0
Q ss_pred Ee-------------CCCChHHHHHHHHHhCCceEEE-E---ecCCccCCCCC-CCchHHHHHHHHhhcCCCcEEE--ee
Q 021527 198 FT-------------TPTTPTDRMKAIVEASEGFVYL-V---SSIGVTGARAS-ISGHVQTLLREIKESSTKPVAV--GF 257 (311)
Q Consensus 198 li-------------sp~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~-~~~~~~~~l~~vk~~~~~Pv~v--Gf 257 (311)
.+ ..-|.++..++..+.. |...+ + +..|.+-.... ++ .+.++++++.+++|++. |.
T Consensus 140 ~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T-gvD~LAvaiGt~HG~y~~~p~~Ld---~~~L~~I~~~v~vPLVlHGgS 215 (288)
T TIGR00167 140 TLGGEEDGVSVADESALYTDPEEAKEFVKLT-GVDSLAAAIGNVHGVYKGEPKGLD---FERLEEIQKYVNLPLVLHGGS 215 (288)
T ss_pred eccCccCCcccccccccCCCHHHHHHHHhcc-CCcEEeeccCccccccCCCCCccC---HHHHHHHHHHhCCCEEEeCCC
Confidence 11 1123345555665533 44444 3 33443321111 22 36799999989999876 67
Q ss_pred CCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 258 GISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 258 GIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
|++ .|+++++.+.|.-=+=|+|.+....
T Consensus 216 G~~-~e~~~~ai~~Gi~KiNi~T~l~~a~ 243 (288)
T TIGR00167 216 GIP-DEEIKKAISLGVVKVNIDTELQIAF 243 (288)
T ss_pred CCC-HHHHHHHHHcCCeEEEcChHHHHHH
Confidence 775 6999999999999999999985433
No 273
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.73 E-value=0.00027 Score=64.96 Aligned_cols=77 Identities=13% Similarity=0.217 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.|.+..+.+.+..-..+|++...+..|.. + ..+.++++.+....|+.+|+||+|.|+++++++.|||=|||||..
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~~~~----~-n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a 105 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAEGVG----N-NEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIV 105 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcCCCc----c-hHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchh
Confidence 46677776665444458998877654322 1 236788887743359999999999999999999999999999988
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
++
T Consensus 106 ~~ 107 (232)
T PRK13586 106 FT 107 (232)
T ss_pred hC
Confidence 76
No 274
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=97.73 E-value=0.0021 Score=65.13 Aligned_cols=140 Identities=26% Similarity=0.442 Sum_probs=97.4
Q ss_pred cCcch---hccCHHHHHHHHHHcC--CcEEEec-CCC-hhhHHHHHHHHHHcCCCeEEEeCCCChHHH--HHHHHHhCCc
Q 021527 147 YYNPI---LKRGVDNFMSTVRDIG--IRGLVVP-DVP-LEETESLQKEAMKNKIELVLFTTPTTPTDR--MKAIVEASEG 217 (311)
Q Consensus 147 Y~n~i---~~~g~~~fi~~~~~aG--adGviip-Dlp-~ee~~~~~~~~~~~gi~~I~lisp~t~~er--i~~i~~~a~g 217 (311)
|.||. ++.|-.+.++++...| +|||.|. .+| .||+.+|.+.+...|+..+.| -|.|.++. .-.|++...-
T Consensus 98 fldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~f-KPGtIeqI~svi~IAka~P~ 176 (717)
T COG4981 98 FLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAF-KPGTIEQIRSVIRIAKANPT 176 (717)
T ss_pred EechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEe-cCCcHHHHHHHHHHHhcCCC
Confidence 56764 4667688999998888 5899883 222 378899999999889987775 67775431 3345555455
Q ss_pred e-EEEEecCCccCCCCC---CCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH------cC-----CcEEEEhhHh
Q 021527 218 F-VYLVSSIGVTGARAS---ISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG------WG-----ADGVIVGSAM 282 (311)
Q Consensus 218 f-iY~vs~~G~TG~~~~---~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~------~G-----ADGvIVGSai 282 (311)
| |.+.=--|..|.+.+ ++..+.....++|..-|+-+|+|+||-+|++....+. +| .||+.|||+.
T Consensus 177 ~pIilq~egGraGGHHSweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaa 256 (717)
T COG4981 177 FPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAA 256 (717)
T ss_pred CceEEEEecCccCCccchhhcccHHHHHHHHHhcCCCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhH
Confidence 5 333212234454443 3444556677888888999999999999999987661 22 6999999998
Q ss_pred hchhh
Q 021527 283 VKLLG 287 (311)
Q Consensus 283 v~~~~ 287 (311)
+-.-+
T Consensus 257 MatKE 261 (717)
T COG4981 257 MATKE 261 (717)
T ss_pred Hhhhh
Confidence 86543
No 275
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.73 E-value=0.00018 Score=67.28 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=59.2
Q ss_pred CCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 200 TPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 200 sp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
+...|.+..+...+..-..+=+|...| |.. .+ .+.++++++ +++||.+|+||++ |+++++++.|||=||||
T Consensus 41 ~~~dP~~~A~~~~~~Ga~~lHvVDLdg--g~~--~n---~~~i~~i~~-~~~~vqvGGGIR~-e~i~~~l~~Ga~rViig 111 (262)
T PLN02446 41 SDKSAAEFAEMYKRDGLTGGHVIMLGA--DDA--SL---AAALEALRA-YPGGLQVGGGVNS-ENAMSYLDAGASHVIVT 111 (262)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCC--CCc--cc---HHHHHHHHh-CCCCEEEeCCccH-HHHHHHHHcCCCEEEEc
Confidence 345677777777664444566687755 322 11 467888888 8899999999996 99999999999999999
Q ss_pred hHhhc
Q 021527 280 SAMVK 284 (311)
Q Consensus 280 Saiv~ 284 (311)
|+.++
T Consensus 112 T~Av~ 116 (262)
T PLN02446 112 SYVFR 116 (262)
T ss_pred hHHHh
Confidence 99887
No 276
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=97.73 E-value=0.00093 Score=65.04 Aligned_cols=130 Identities=22% Similarity=0.300 Sum_probs=87.3
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHc----------CCCeEEEeCCCC-hHH
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKN----------KIELVLFTTPTT-PTD 206 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~----------gi~~I~lisp~t-~~e 206 (311)
+++|++-- -++++. -.++...+...|.=|+|--..++|+..+..+.++++ .+-.-.-+.+.. ..+
T Consensus 36 l~iPivsa-~MDtVt---e~~mAiama~~Gglgvih~~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~e 111 (352)
T PF00478_consen 36 LKIPIVSA-PMDTVT---ESEMAIAMARLGGLGVIHRNMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFE 111 (352)
T ss_dssp ESSSEEE--SSTTTS---SHHHHHHHHHTTSEEEEESSSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHH
T ss_pred ecCceEec-Cccccc---hHHHHHHHHHhcCCceecCCCCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHH
Confidence 67898772 234442 246788888889999988899998877666666543 222222234432 458
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
|.+.+.+..-.++.+-+..| -...+.+.++++|+.. ++||+ +++|-|+|.++.+.++|||+|-||
T Consensus 112 r~~~L~~agvD~ivID~a~g-------~s~~~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 112 RAEALVEAGVDVIVIDSAHG-------HSEHVIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHTT-SEEEEE-SST-------TSHHHHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHcCCCEEEccccCc-------cHHHHHHHHHHHHHhCCCceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 88888775445554433333 2345678899999976 48884 667999999999999999999998
No 277
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=97.73 E-value=0.002 Score=60.84 Aligned_cols=167 Identities=16% Similarity=0.193 Sum_probs=99.1
Q ss_pred ChhhHHHHHHHH-HHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc------cCCCcEEEEec
Q 021527 75 DLSTTAEALKLL-DSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP------QMSCPIALFTY 147 (311)
Q Consensus 75 ~~~~~~e~~~~L-~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~------~~~iPiilm~Y 147 (311)
+.++-+++++.| ++.|+|.||+|.|-..| . -. +.++++.+ ... .+.+++.
T Consensus 17 s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~---~--e~-----------------~av~~~~~~~~~~~~~~-~~~~~a~ 73 (280)
T cd07945 17 SPSEKLNIAKILLQELKVDRIEVASARVSE---G--EF-----------------EAVQKIIDWAAEEGLLD-RIEVLGF 73 (280)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEecCCCCCH---H--HH-----------------HHHHHHHHHhhhhcccc-CcEEEEe
Confidence 346778999997 67799999999874333 1 11 12222211 111 2233222
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEec----C--------CChhh----HHHHHHHHHHcCCCeEEEeCC-----CChHH
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVP----D--------VPLEE----TESLQKEAMKNKIELVLFTTP-----TTPTD 206 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviip----D--------lp~ee----~~~~~~~~~~~gi~~I~lisp-----~t~~e 206 (311)
. + .++-++.+.++|++.+.+. | ...+| ..+..+.++++|++..+.+.. .++.+
T Consensus 74 ~-~-----~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~ 147 (280)
T cd07945 74 V-D-----GDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPD 147 (280)
T ss_pred c-C-----cHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHH
Confidence 1 1 1456788999999987763 1 12233 455678889999986665542 34556
Q ss_pred HHHHHHHh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 207 RMKAIVEA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 207 ri~~i~~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
++.++++. .-.-+++... +|. ..|..+.++++.+|+.. ++|+-+ .+|... .+.-..+++|||.+
T Consensus 148 ~~~~~~~~~~~~G~~~i~l~DT---~G~--~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~-AN~laA~~aGa~~v 220 (280)
T cd07945 148 YVFQLVDFLSDLPIKRIMLPDT---LGI--LSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAV-ANVLAAVKAGIKGL 220 (280)
T ss_pred HHHHHHHHHHHcCCCEEEecCC---CCC--CCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHH-HHHHHHHHhCCCEE
Confidence 65555443 2233555543 443 34677899999998865 467655 344543 44556677999865
No 278
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=97.73 E-value=0.0024 Score=60.70 Aligned_cols=182 Identities=18% Similarity=0.273 Sum_probs=111.8
Q ss_pred cCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCC------------CCCCC----CC--hHHH----H---H
Q 021527 60 QGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVP------------YSDPL----AD--GPVI----Q---A 112 (311)
Q Consensus 60 ~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~P------------fsDP~----aD--Gp~I----q---~ 112 (311)
.+-+.|-.|+ |+|.+-+.+.++..+++|+..|-+ +.| |+.|- .+ |+.- . .
T Consensus 120 ~~~rwfQLYv---ykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~s 196 (363)
T KOG0538|consen 120 PGIRWFQLYV---YKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDS 196 (363)
T ss_pred CCcEEEEEEe---cCchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccch
Confidence 3455677788 999999999999999999999887 222 34443 11 1100 0 0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcC
Q 021527 113 AATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNK 192 (311)
Q Consensus 113 a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~g 192 (311)
....+...-+...-.-+.++.+|..++.||++-|-.+ .+..+.+.+.|++|+|+.+ ||
T Consensus 197 g~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt-------~eDA~~Ave~G~~GIIVSN---------------HG 254 (363)
T KOG0538|consen 197 GLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLT-------GEDARKAVEAGVAGIIVSN---------------HG 254 (363)
T ss_pred hhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecc-------cHHHHHHHHhCCceEEEeC---------------CC
Confidence 0001111111111123567788888999999987544 3567788889999988863 22
Q ss_pred CCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC
Q 021527 193 IELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG 272 (311)
Q Consensus 193 i~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G 272 (311)
=...- ..|.| .+-+. |.++-+.. .+||...+||++-.||-+.+..|
T Consensus 255 gRQlD-~vpAt-I~~L~------------------------------Evv~aV~~--ri~V~lDGGVR~G~DVlKALALG 300 (363)
T KOG0538|consen 255 GRQLD-YVPAT-IEALP------------------------------EVVKAVEG--RIPVFLDGGVRRGTDVLKALALG 300 (363)
T ss_pred ccccC-cccch-HHHHH------------------------------HHHHHhcC--ceEEEEecCcccchHHHHHHhcc
Confidence 11110 12222 12222 22333322 48999999999999999999999
Q ss_pred CcEEEEhhHhhchhhhcCCchhHHHHHHHH
Q 021527 273 ADGVIVGSAMVKLLGEAQSPEEGLKELEKF 302 (311)
Q Consensus 273 ADGvIVGSaiv~~~~~~~~~~~~~~~~~~~ 302 (311)
|-||.||--++-.+.-. .+.+++++.+.
T Consensus 301 Ak~VfiGRP~v~gLA~~--Ge~GV~~vl~i 328 (363)
T KOG0538|consen 301 AKGVFIGRPIVWGLAAK--GEAGVKKVLDI 328 (363)
T ss_pred cceEEecCchheeeccc--cchhHHHHHHH
Confidence 99999998888777432 23344444443
No 279
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.72 E-value=0.00082 Score=68.07 Aligned_cols=123 Identities=16% Similarity=0.151 Sum_probs=79.2
Q ss_pred HHHHHHHHcCCcEEEecCCChh---hHHHHHHHHHHcCCCeEEEe-CCCChHHHHHHHHHhCCceEEEE---------ec
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLE---ETESLQKEAMKNKIELVLFT-TPTTPTDRMKAIVEASEGFVYLV---------SS 224 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~e---e~~~~~~~~~~~gi~~I~li-sp~t~~eri~~i~~~a~gfiY~v---------s~ 224 (311)
+.++.+.+.|+|.+ +.|.... ...++.+.+++.--+.-++. .-.|. +-.+.+.+ .|+..+- +.
T Consensus 230 ~~a~~Lv~aGvd~i-~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~-~~a~~l~~--aGad~v~vgig~gsictt 305 (479)
T PRK07807 230 AKARALLEAGVDVL-VVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTA-EGTRDLVE--AGADIVKVGVGPGAMCTT 305 (479)
T ss_pred HHHHHHHHhCCCEE-EEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCH-HHHHHHHH--cCCCEEEECccCCccccc
Confidence 45667788999995 5565543 35567777777533333333 33343 44334434 3444442 23
Q ss_pred CCccCCCCCCCchHHHHHHHHhh---cCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhh
Q 021527 225 IGVTGARASISGHVQTLLREIKE---SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 225 ~G~TG~~~~~~~~~~~~l~~vk~---~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~ 288 (311)
.++||... |. ...+.++.+ ..++||++.+||+++.|+.+.+.+|||+|.+||.|...-+.
T Consensus 306 ~~~~~~~~---p~-~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Es 368 (479)
T PRK07807 306 RMMTGVGR---PQ-FSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYES 368 (479)
T ss_pred ccccCCch---hH-HHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccC
Confidence 34555321 22 344555555 45899999999999999999999999999999999876643
No 280
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=97.71 E-value=0.035 Score=52.46 Aligned_cols=204 Identities=18% Similarity=0.247 Sum_probs=131.6
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHH
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSML 131 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i 131 (311)
+.++..+++ +-++..|= -.+++...-++++.++.+..+|---.|-.-.+ ...+.+..++
T Consensus 3 ~lL~~A~~~-~yaV~AfN---~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~-----------------~~~~~~~~~~ 61 (276)
T cd00947 3 ELLKKAREG-GYAVGAFN---INNLETLKAILEAAEETRSPVILQISEGAIKY-----------------AGLELLVAMV 61 (276)
T ss_pred HHHHHHHHC-CceEEEEe---eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhh-----------------CCHHHHHHHH
Confidence 445554444 34555555 34678888899999999988865432211111 1234456677
Q ss_pred HHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE---EEeC--
Q 021527 132 KEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV---LFTT-- 200 (311)
Q Consensus 132 ~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I---~lis-- 200 (311)
+.+.++.++||.+.. + +.-..+++..+.++|.+.|.+ ..+|+|| ..++.+.++..|+.+= --+.
T Consensus 62 ~~~a~~~~VPV~lHL--D---H~~~~~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~ 136 (276)
T cd00947 62 KAAAERASVPVALHL--D---HGSSFELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGE 136 (276)
T ss_pred HHHHHHCCCCEEEEC--C---CCCCHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCc
Confidence 788888899999963 1 221246888999999999988 4788887 6778888998887421 1110
Q ss_pred ---------CCChHHHHHHHHHhCCceEEE-E---ecCCccCC-CCCCCchHHHHHHHHhhcCCCcEEE--eeCCCCHHH
Q 021527 201 ---------PTTPTDRMKAIVEASEGFVYL-V---SSIGVTGA-RASISGHVQTLLREIKESSTKPVAV--GFGISKPEH 264 (311)
Q Consensus 201 ---------p~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~-~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIst~e~ 264 (311)
--|.++..++..+.. |...+ + +..|..-. ...++ .+.|+++++.+++|++. |.|+. .|+
T Consensus 137 e~~~~~~~~~~T~pe~a~~Fv~~T-gvD~LAvsiGt~HG~Y~~~~p~L~---~~~L~~i~~~~~vPLVlHGgSG~~-~e~ 211 (276)
T cd00947 137 EDGVVGDEGLLTDPEEAEEFVEET-GVDALAVAIGTSHGAYKGGEPKLD---FDRLKEIAERVNVPLVLHGGSGIP-DEQ 211 (276)
T ss_pred cCCcccccccCCCHHHHHHHHHHH-CCCEEEeccCccccccCCCCCccC---HHHHHHHHHHhCCCEEEeCCCCCC-HHH
Confidence 023345555555543 43344 3 33443322 22233 36788998888999866 66675 699
Q ss_pred HHHHHHcCCcEEEEhhHhhchh
Q 021527 265 VQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 265 v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+++..+.|.-=+=|+|.+....
T Consensus 212 ~~~ai~~Gi~KiNi~T~l~~a~ 233 (276)
T cd00947 212 IRKAIKLGVCKININTDLRLAF 233 (276)
T ss_pred HHHHHHcCCeEEEeChHHHHHH
Confidence 9999999999999999886644
No 281
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.70 E-value=0.00048 Score=69.81 Aligned_cols=123 Identities=20% Similarity=0.257 Sum_probs=73.3
Q ss_pred HHHHHHHHcCCcEEEecCCCh---hhHHHHHHHHHHc--CCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCC--
Q 021527 158 NFMSTVRDIGIRGLVVPDVPL---EETESLQKEAMKN--KIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA-- 230 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~---ee~~~~~~~~~~~--gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~-- 230 (311)
+-++.+.++|+|.+ +.|.+. +...+..+.+++. ++.++ .-.-.| .+-...+.+. |+.++.- |+++.
T Consensus 231 e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~~~p~~~vi-~g~v~t-~e~a~~l~~a--Gad~i~v--g~g~gs~ 303 (486)
T PRK05567 231 ERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKAKYPDVQII-AGNVAT-AEAARALIEA--GADAVKV--GIGPGSI 303 (486)
T ss_pred HHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHhhCCCCCEE-EeccCC-HHHHHHHHHc--CCCEEEE--CCCCCcc
Confidence 46677899999965 555432 2334444555543 33322 223333 3444444443 3333311 22211
Q ss_pred ---C--CCCCchHHHHHHHHhhc---CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 231 ---R--ASISGHVQTLLREIKES---STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 231 ---~--~~~~~~~~~~l~~vk~~---~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
+ .+......+.+.++++. .++||++.+||+++.|+.+.+.+|||.|.+||+|.+..+
T Consensus 304 ~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~e 368 (486)
T PRK05567 304 CTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTEE 368 (486)
T ss_pred ccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECcccccccc
Confidence 1 12211223455555443 479999999999999999999999999999999998764
No 282
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=97.70 E-value=0.0074 Score=57.27 Aligned_cols=157 Identities=11% Similarity=0.122 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecC------------------CChhhHHH
Q 021527 122 TNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPD------------------VPLEETES 183 (311)
Q Consensus 122 ~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipD------------------lp~ee~~~ 183 (311)
.++++.++.++.|...+++||++..-.. .-...+.+.++.+.++|+.|+.+=| ++.||..+
T Consensus 61 ~~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~ 139 (285)
T TIGR02320 61 ASWTQRLDVVEFMFDVTTKPIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCG 139 (285)
T ss_pred CCHHHHHHHHHHHHhhcCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHH
Confidence 5888999999999999999998874222 1112335668889999999999933 45666555
Q ss_pred HHHHHHHc--CCCeEEEeC------CCChH---HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CC
Q 021527 184 LQKEAMKN--KIELVLFTT------PTTPT---DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TK 251 (311)
Q Consensus 184 ~~~~~~~~--gi~~I~lis------p~t~~---eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~ 251 (311)
-.+.+++. +-+.++..- ....+ +|.+.+.+..-..+|+.. +. ....++.++.++++... ++
T Consensus 140 kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~--~~-----~~~~ei~~~~~~~~~~~p~~ 212 (285)
T TIGR02320 140 KIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHS--RK-----KDPDEILEFARRFRNHYPRT 212 (285)
T ss_pred HHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecC--CC-----CCHHHHHHHHHHhhhhCCCC
Confidence 44444443 444443321 11122 566666665455556541 11 11234555566555422 56
Q ss_pred cEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 252 PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 252 Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
|+++--+-.-.-.++++.++|+.-|+.|+.+.+..
T Consensus 213 pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~aa 247 (285)
T TIGR02320 213 PLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRAA 247 (285)
T ss_pred CEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHHH
Confidence 87653321111246788889999999998887644
No 283
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=97.69 E-value=0.0012 Score=59.71 Aligned_cols=161 Identities=18% Similarity=0.245 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-cCCCcEEEEecCcchhccC
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-QMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~-~~~iPiilm~Y~n~i~~~g 155 (311)
+...+.++.+.+.|||+|.+|.-.+-|.+..---+.- ++.+...++.+++ ..++|+-+-+|.-
T Consensus 19 ~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE----------~~rl~~~l~~i~~~~~~~plSIDT~~~------ 82 (210)
T PF00809_consen 19 DEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEE----------MERLVPVLQAIREENPDVPLSIDTFNP------ 82 (210)
T ss_dssp HHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHH----------HHHHHHHHHHHHHHHTTSEEEEEESSH------
T ss_pred HHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHH----------HHHHHHHHHHHhccCCCeEEEEECCCH------
Confidence 3456668899999999999999888887743222222 2345667777776 6789999998742
Q ss_pred HHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCC-------CChHHH------HHHHHHh------CC
Q 021527 156 VDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTP-------TTPTDR------MKAIVEA------SE 216 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp-------~t~~er------i~~i~~~------a~ 216 (311)
+-++.+.+.|++-+.-.. ..+...++.+.+++||...|.+.+. .+++.| +...... ..
T Consensus 83 --~v~~~aL~~g~~~ind~~-~~~~~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~ 159 (210)
T PF00809_consen 83 --EVAEAALKAGADIINDIS-GFEDDPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKA 159 (210)
T ss_dssp --HHHHHHHHHTSSEEEETT-TTSSSTTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHcCcceEEecc-cccccchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHc
Confidence 345566666999755432 2222556778889999987776543 223322 2111111 12
Q ss_pred c----eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEee
Q 021527 217 G----FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGF 257 (311)
Q Consensus 217 g----fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGf 257 (311)
| -+|+-...|. +.....+-.+.+.++++++..+.|+++|.
T Consensus 160 Gi~~~~Ii~DPgigf-~~~~~~~~~~l~~i~~~~~~~~~p~l~~~ 203 (210)
T PF00809_consen 160 GIPRERIILDPGIGF-GKDPEQNLELLRNIEELKELFGYPILVGG 203 (210)
T ss_dssp T--GGGEEEETTTTS-STTHHHHHHHHHTHHHHHTTSSSEBEEEE
T ss_pred CCCHHHEeeccccCc-CCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3 4788777765 32222233444556666666578876653
No 284
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=97.68 E-value=0.00095 Score=66.30 Aligned_cols=179 Identities=20% Similarity=0.341 Sum_probs=106.3
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.+.-+++++.|++.|+|.||+|+|.+.| + -++.++.+.. +.++.+.+-+ .-....
T Consensus 23 ~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~---~-------------------~~~~~~~i~~--~~~~~~~~~~-~~~~~~ 77 (409)
T COG0119 23 VEEKIRIAKALDDLGVDYIEAGFPVASP---G-------------------DFEFVRAIAE--KAGLFICALI-AALARA 77 (409)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcCCh---h-------------------hHHHHHHHHH--hcCcccchhh-hhhHHh
Confidence 4677899999999999999999999765 2 1334444442 2222111100 001112
Q ss_pred HHHHHHHHHHcCCcEEEec----CCC--------hhh----HHHHHHHHHHcCCCeEEEe--CCCChHHHHHHHHHhCC-
Q 021527 156 VDNFMSTVRDIGIRGLVVP----DVP--------LEE----TESLQKEAMKNKIELVLFT--TPTTPTDRMKAIVEASE- 216 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviip----Dlp--------~ee----~~~~~~~~~~~gi~~I~li--sp~t~~eri~~i~~~a~- 216 (311)
.++-++.+.++|++.+.+- |+. .+| +.+..+.++.+|++..+.. .-.++.+.+.++.+.+.
T Consensus 78 ~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~ 157 (409)
T COG0119 78 IKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIE 157 (409)
T ss_pred HHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHH
Confidence 3446778899999987662 222 222 5567788899998877433 22444555545544422
Q ss_pred ---ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC--CcEEE----eeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 217 ---GFVYLVSSIGVTGARASISGHVQTLLREIKESST--KPVAV----GFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 217 ---gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~--~Pv~v----GfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
..|++....|+ ..|..+.+.++.+++..+ .|+-+ .+|--.++.+ ..+++|||-| .+-+.-++
T Consensus 158 ~ga~~i~l~DTvG~-----~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANsl-aAv~aGa~~v---~~TvnGiG 228 (409)
T COG0119 158 AGADRINLPDTVGV-----ATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSL-AAVEAGADQV---EGTVNGIG 228 (409)
T ss_pred cCCcEEEECCCcCc-----cCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHH-HHHHcCCcEE---EEecccce
Confidence 23455444443 346778899999988764 66655 4555444444 4556899877 44444444
Q ss_pred h
Q 021527 288 E 288 (311)
Q Consensus 288 ~ 288 (311)
|
T Consensus 229 E 229 (409)
T COG0119 229 E 229 (409)
T ss_pred e
Confidence 3
No 285
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.68 E-value=0.00018 Score=67.04 Aligned_cols=69 Identities=20% Similarity=0.142 Sum_probs=55.8
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+..+...+..-..+-+|.. |.. -.+.++++.+.+++||.+|+||++ |++++++++|||-|++||++++
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL----g~~------n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML----GPN------NDDAAKEALHAYPGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC----CCC------cHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence 67777776655555666776 221 136788888888999999999997 9999999999999999999886
No 286
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.0019 Score=62.18 Aligned_cols=161 Identities=22% Similarity=0.351 Sum_probs=103.2
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcC----CCHHHHHHHHHHhhcc
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG----TNFNAILSMLKEVVPQ 137 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G----~~~~~~~~~i~~ir~~ 137 (311)
...++.=+.-.+| +.+.+.++.+++.|+|+|+|.+=- | -|.|++.. .| .+.+-+.++++++++.
T Consensus 66 e~p~~vQl~gsdp--~~l~eaA~~~~~~g~~~IdlN~GC--P---~~~V~~~g-----~Ga~Ll~~p~lv~~iv~a~~~a 133 (323)
T COG0042 66 ERPVAVQLGGSDP--ELLAEAAKIAEELGADIIDLNCGC--P---SPKVVKGG-----AGAALLKNPELLAEIVKAMVEA 133 (323)
T ss_pred CCCEEEEecCCCH--HHHHHHHHHHHhcCCCEEeeeCCC--C---hHHhcCCC-----cchhhcCCHHHHHHHHHHHHHh
Confidence 3446666666677 889999999999999999994222 1 11222110 12 2667778899999988
Q ss_pred C-CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 138 M-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 138 ~-~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
+ ++||=+-. +.|.+ . .| -...++...+.+.|.+.+. +...|..++
T Consensus 134 v~~iPVTVKi------RlG~d------------~---~~---~~~~~ia~~~~~~g~~~lt-VHgRtr~~~--------- 179 (323)
T COG0042 134 VGDIPVTVKI------RLGWD------------D---DD---ILALEIARILEDAGADALT-VHGRTRAQG--------- 179 (323)
T ss_pred hCCCCeEEEE------ecccC------------c---cc---ccHHHHHHHHHhcCCCEEE-EecccHHhc---------
Confidence 8 59998854 22221 1 00 0122344444455555433 222332111
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~ 284 (311)
.+|. ...+.|+++|+.++ +||+..++|.|+++++++++. |+|||.||-+.+.
T Consensus 180 ----------y~~~------ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~ 233 (323)
T COG0042 180 ----------YLGP------ADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALG 233 (323)
T ss_pred ----------CCCc------cCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHcc
Confidence 1221 12468999999887 999999999999999999985 6999999977654
No 287
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.67 E-value=0.0015 Score=62.96 Aligned_cols=130 Identities=20% Similarity=0.258 Sum_probs=88.4
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCCh--HHHHHHHHHhC
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTP--TDRMKAIVEAS 215 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~--~eri~~i~~~a 215 (311)
+++||+-- -+.++ +..+....+.+.|.-+++==.+++|+..++.+..+......+....-+.+ .+|++++.+..
T Consensus 45 ~giPii~A-nMdTV---~~~~mA~~la~~g~~~~iHk~~~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~ 120 (346)
T PRK05096 45 SGVPIIAA-NMDTV---GTFEMAKALASFDILTAVHKHYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALS 120 (346)
T ss_pred cCCceEec-CCCcc---ccHHHHHHHHHCCCeEEEecCCCHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcC
Confidence 56887762 22223 45678888888888887555688888777766666433333333322232 37787777754
Q ss_pred CceEEE--EecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 216 EGFVYL--VSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 216 ~gfiY~--vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.+..|+ -+..| -...+.++++++|+.. +++| +++.|-|+|.++.+.++|||++-||
T Consensus 121 ~g~D~iviD~AhG-------hs~~~i~~ik~ik~~~P~~~v-IaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 121 PALNFICIDVANG-------YSEHFVQFVAKAREAWPDKTI-CAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred CCCCEEEEECCCC-------cHHHHHHHHHHHHHhCCCCcE-EEecccCHHHHHHHHHcCCCEEEEc
Confidence 454444 33333 2445778999999976 5675 7889999999999999999999977
No 288
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=97.64 E-value=0.0028 Score=64.43 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=98.9
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
...-|.++...+.++.+.+.|||+|-+|...+.| ++. .+...|+.+++.+++||-+.+|.
T Consensus 158 I~~a~~l~~i~~~A~~~~~~GADIIDIG~~st~p---~~~----------------~v~~~V~~l~~~~~~pISIDT~~- 217 (499)
T TIGR00284 158 IPPTVAEDGIEGLAARMERDGADMVALGTGSFDD---DPD----------------VVKEKVKTALDALDSPVIADTPT- 217 (499)
T ss_pred EcCCcchHHHHHHHHHHHHCCCCEEEECCCcCCC---cHH----------------HHHHHHHHHHhhCCCcEEEeCCC-
Confidence 5566777778999999999999999999988777 321 23457777777778999998863
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH-----HHHHHHHHhCCce--EEEE
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT-----DRMKAIVEASEGF--VYLV 222 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~-----eri~~i~~~a~gf--iY~v 222 (311)
.+.++.+.++|+|- +.|+.-+...++.+.++++|...|.+-....+. ++++... ..|+ +++-
T Consensus 218 -------~~v~eaAL~aGAdi--INsVs~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~--~~Gi~~IIlD 286 (499)
T TIGR00284 218 -------LDELYEALKAGASG--VIMPDVENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLR--TSGYSKVAAD 286 (499)
T ss_pred -------HHHHHHHHHcCCCE--EEECCccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHH--HCCCCcEEEe
Confidence 35677888889994 446654444567777889998776654321111 2222221 3454 4554
Q ss_pred ecCCccCCCCCCCchHHHHHHHHh---hcCCCcEEEeeC
Q 021527 223 SSIGVTGARASISGHVQTLLREIK---ESSTKPVAVGFG 258 (311)
Q Consensus 223 s~~G~TG~~~~~~~~~~~~l~~vk---~~~~~Pv~vGfG 258 (311)
...|. .+..+.+.+.+++ +..+.|+++|-|
T Consensus 287 Pglg~------~~~~l~~sL~~l~~~r~~~~~Pil~GvS 319 (499)
T TIGR00284 287 PSLSP------PLLGLLESIIRFRRASRLLNVPLVFGAA 319 (499)
T ss_pred CCCCc------chHHHHHHHHHHHHHHHhcCCcEEEeec
Confidence 54442 1223444445544 456799999875
No 289
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00046 Score=63.62 Aligned_cols=78 Identities=31% Similarity=0.388 Sum_probs=60.0
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.|.+..+...+..-.++=+|.+.|-. .+-+. -.+.++++.+.+++||-+|+||++.|+++.+++.|++-||+||+-
T Consensus 32 ~P~~~a~~~~~~Ga~~lHlVDLdgA~---~g~~~-n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 32 DPLEVAKKWSDQGAEWLHLVDLDGAK---AGGPR-NLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred CHHHHHHHHHHcCCcEEEEeeccccc---cCCcc-cHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 45677777766444455568766533 22222 246799999999999999999999999999999999999999988
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
++
T Consensus 108 v~ 109 (241)
T COG0106 108 VK 109 (241)
T ss_pred ec
Confidence 65
No 290
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=97.63 E-value=0.013 Score=55.48 Aligned_cols=187 Identities=12% Similarity=0.139 Sum_probs=107.9
Q ss_pred EEEEEeC----CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--C
Q 021527 65 LIPYITA----GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--M 138 (311)
Q Consensus 65 li~yi~~----G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~ 138 (311)
+.+.+|| |.-|.+.+.+.++.+.+.|+|.|-++--.. +++ -.+.++..++++.+.+. -
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstG----E~~------------~Ls~eEr~~l~~~~~~~~~~ 68 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTG----EFF------------SLTPDEYAQVVRAAVEETAG 68 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCc----Ccc------------cCCHHHHHHHHHHHHHHhCC
Confidence 3444555 556678999999999999999998851111 111 14556666677766654 3
Q ss_pred CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec-----CCChhhHHH-HHHHHHHcCCCeEEEeCC--CChHHHHHH
Q 021527 139 SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP-----DVPLEETES-LQKEAMKNKIELVLFTTP--TTPTDRMKA 210 (311)
Q Consensus 139 ~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip-----Dlp~ee~~~-~~~~~~~~gi~~I~lisp--~t~~eri~~ 210 (311)
++||+.-.-.|+ ...-+..+.+.++|+|++++. ....++..+ |...+...++.++++=.+ +.+.+-+++
T Consensus 69 ~~pvi~gv~~~t---~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~ 145 (289)
T cd00951 69 RVPVLAGAGYGT---ATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLAR 145 (289)
T ss_pred CCCEEEecCCCH---HHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHH
Confidence 689887654332 223457788999999998883 122244555 455556667776655322 234566777
Q ss_pred HHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCC-HHHHHHHHHcCCcEEEEhhH
Q 021527 211 IVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISK-PEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 211 i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst-~e~v~~v~~~GADGvIVGSa 281 (311)
+++.-..++++=.. +| +. ..+.++++..+-.+.+-.|-.+ -..+-..+..|++|.|-|.+
T Consensus 146 L~~~~pnivgiKds---~~-------d~-~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~l~~Ga~G~is~~~ 206 (289)
T cd00951 146 LAERCPNLVGFKDG---VG-------DI-ELMRRIVAKLGDRLLYLGGLPTAEVFALAYLAMGVPTYSSAVF 206 (289)
T ss_pred HHhcCCCEEEEEeC---CC-------CH-HHHHHHHHhcCCCeEEEeCCCcchHhHHHHHHCCCCEEEechh
Confidence 76423455544211 11 11 2344444433223334344322 23356667789999997743
No 291
>PLN02363 phosphoribosylanthranilate isomerase
Probab=97.61 E-value=0.017 Score=54.06 Aligned_cols=194 Identities=12% Similarity=0.187 Sum_probs=109.1
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
..+.++.+.+.|||+|=+-+.-..| +-++.++.-++++.+.+....+|.++. | -..+.
T Consensus 56 ~~eda~~a~~~GaD~iGfIf~~~Sp----------------R~Vs~e~a~~I~~~l~~~~~~~VgVfv--~----~~~~~ 113 (256)
T PLN02363 56 SARDAAMAVEAGADFIGMILWPKSK----------------RSISLSVAKEISQVAREGGAKPVGVFV--D----DDANT 113 (256)
T ss_pred cHHHHHHHHHcCCCEEEEecCCCCC----------------CcCCHHHHHHHHHhccccCccEEEEEe--C----CCHHH
Confidence 3678888899999998885422333 113333334455544432123577764 2 22455
Q ss_pred HHHHHHHcCCcEEEecC-CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHh-C--CceEEEEecCCccCCCCCC
Q 021527 159 FMSTVRDIGIRGLVVPD-VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEA-S--EGFVYLVSSIGVTGARASI 234 (311)
Q Consensus 159 fi~~~~~aGadGviipD-lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~-a--~gfiY~vs~~G~TG~~~~~ 234 (311)
..+.+.+.|.|.|=+++ .+.+ +.+.++. ++..+..+......+-+..+... . -.++.+-+..|.||.. .
T Consensus 114 I~~~~~~~~ld~VQLHG~e~~~----~~~~l~~-~~~iikai~v~~~~~~~~~~~~~~~~~~D~~LlDs~~GGtG~t--~ 186 (256)
T PLN02363 114 ILRAADSSDLELVQLHGNGSRA----AFSRLVR-ERKVIYVLNANEDGKLLNVVPEEDCHLADWILVDSATGGSGKG--F 186 (256)
T ss_pred HHHHHHhcCCCEEEECCCCCHH----HHHHhhc-CCcEEEEEEECchHHHHHHHHhhccccCCEEEEeCCCCCCCCc--c
Confidence 56677889999998874 3322 2333332 35555444433222222222221 1 1233333444666653 2
Q ss_pred CchHHHHHHHHhh-cCCCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHhhC
Q 021527 235 SGHVQTLLREIKE-SSTKPVAVGFGISKPEHVQQVAG-WGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 310 (311)
Q Consensus 235 ~~~~~~~l~~vk~-~~~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (311)
+.. .+.. .. ....|+++.+||+ |||+.++.+ .+.+||=|=|.+...-+ .....+++++|++.++.+.
T Consensus 187 DW~---~l~~-~~~~~~~p~iLAGGL~-peNV~~ai~~~~P~GVDVsSGVE~~pG----~~KD~~KI~~fv~~vr~~~ 255 (256)
T PLN02363 187 NWQ---NFKL-PSVRSRNGWLLAGGLT-PENVHEAVSLLKPTGVDVSSGICGPDG----IRKDPSKISSFISAVKSVA 255 (256)
T ss_pred CHH---Hhcc-cccccCCCEEEECCCC-HHHHHHHHHhcCCcEEEeCCcccCCCC----cccCHHHHHHHHHHHHhhc
Confidence 321 2220 01 1245899999996 899999875 57899988787764211 1135789999999998753
No 292
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=97.61 E-value=0.012 Score=55.32 Aligned_cols=178 Identities=17% Similarity=0.200 Sum_probs=106.2
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|..|.+.+.+.++.+.+.|+|.+-++--.. ++.. .+.++..++++.+.+. .++||++-+-.+
T Consensus 17 g~id~~~~~~~i~~l~~~Gv~gl~~~GstG----E~~~------------Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~ 80 (289)
T PF00701_consen 17 GSIDEDALKRLIDFLIEAGVDGLVVLGSTG----EFYS------------LTDEERKELLEIVVEAAAGRVPVIAGVGAN 80 (289)
T ss_dssp SSB-HHHHHHHHHHHHHTTSSEEEESSTTT----TGGG------------S-HHHHHHHHHHHHHHHTTSSEEEEEEESS
T ss_pred cCcCHHHHHHHHHHHHHcCCCEEEECCCCc----cccc------------CCHHHHHHHHHHHHHHccCceEEEecCcch
Confidence 777889999999999999999999963221 2222 3445555666655542 468988865443
Q ss_pred chhccCHHHHHHHHHHcCCcEEEe--cC---CChhhHHH-HHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCce
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVV--PD---VPLEETES-LQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGF 218 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGvii--pD---lp~ee~~~-~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gf 218 (311)
... ..-++++.+.+.|+||+++ |- ...++..+ |...+..-++..++.-.| ..+.+-+.++++ -..+
T Consensus 81 st~--~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~-~~nv 157 (289)
T PF00701_consen 81 STE--EAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK-IPNV 157 (289)
T ss_dssp SHH--HHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT-STTE
T ss_pred hHH--HHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc-CCcE
Confidence 221 1245777889999999976 21 22244444 566667777877776555 334566777766 4455
Q ss_pred EEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 219 VYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 219 iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
+.+=- .+| +.....+.++... +..++.| . -+.+-..+..|+||++.|++-
T Consensus 158 ~giK~---s~~-------~~~~~~~~~~~~~~~~~v~~G---~-d~~~~~~l~~G~~G~is~~~n 208 (289)
T PF00701_consen 158 VGIKD---SSG-------DLERLIQLLRAVGPDFSVFCG---D-DELLLPALAAGADGFISGLAN 208 (289)
T ss_dssp EEEEE---SSS-------BHHHHHHHHHHSSTTSEEEES---S-GGGHHHHHHTTSSEEEESGGG
T ss_pred EEEEc---Cch-------hHHHHHHHhhhcccCeeeecc---c-cccccccccccCCEEEEcccc
Confidence 54421 011 1223333333322 3455555 2 345677788999999999773
No 293
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=97.59 E-value=0.0035 Score=65.04 Aligned_cols=181 Identities=14% Similarity=0.111 Sum_probs=113.3
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEe-------
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFT------- 146 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~------- 146 (311)
..++...++..++++|...+|++- |-.... +.| +.-++=.+.++.+|+. .++|+..+.
T Consensus 24 ~t~d~~~ia~~~d~~g~~siE~~g--------Gatfd~-~~r-----fl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vG 89 (596)
T PRK14042 24 RTEDMLPICNKMDDVGFWAMEVWG--------GATFDA-CLR-----FLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLG 89 (596)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeeC--------Ccccce-eec-----ccCCCHHHHHHHHHHhCCCCceEEEeccccccc
Confidence 346788999999999999999961 111111 111 1112224556666654 567776553
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChh--hHHHHHHHHHHcCCCeEEE----eCCCChHHHHHHHHHh----CC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLE--ETESLQKEAMKNKIELVLF----TTPTTPTDRMKAIVEA----SE 216 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~e--e~~~~~~~~~~~gi~~I~l----isp~t~~eri~~i~~~----a~ 216 (311)
|.+ .-.-=++.|++.+++.|+|-+=+-|...+ ..+...+.+++.|...... .+|..+.+...++++. .-
T Consensus 90 y~~-~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Ga 168 (596)
T PRK14042 90 YRN-YADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGC 168 (596)
T ss_pred ccc-CChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCC
Confidence 433 00001356999999999999988875432 3555678888999865433 4666666654444432 33
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
..|++....| . ..|..+.++++.+|+.+++||-+ ..|... .+.-...++|||.|
T Consensus 169 d~I~IkDtaG---~--l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~-an~laAieaGad~i 226 (596)
T PRK14042 169 DSIAIKDMAG---L--LTPTVTVELYAGLKQATGLPVHLHSHSTSGLAS-ICHYEAVLAGCNHI 226 (596)
T ss_pred CEEEeCCccc---C--CCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHH-HHHHHHHHhCCCEE
Confidence 3456554433 3 34667899999999988888765 344443 45566678999865
No 294
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.01 Score=55.49 Aligned_cols=195 Identities=19% Similarity=0.285 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHcCCccEEE---EEeCCCC--ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCC
Q 021527 48 VGLAETFTRLKKQGKVALIP---YITAGDP--DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGT 122 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~---yi~~G~P--~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~ 122 (311)
.|+++.|+. ..||..+++ -+.-|.| .++.....++.+.++|+|.+... | |
T Consensus 11 ~rl~rif~~--~tG~~~i~a~DhGv~~g~p~~gl~d~e~~v~~v~~~g~dav~~~-----~---G--------------- 65 (265)
T COG1830 11 RRLARIFNR--GTGRLLILAMDHGVEHGNPIEGLEDPENIVAKVAEAGADAVAMT-----P---G--------------- 65 (265)
T ss_pred HHHHHHhcC--CCCCEEEEecccccccCCCcccccCHHHHHHHHHhcCCCEEEec-----H---h---------------
Confidence 356666652 145444444 2355545 56677788889999999999884 1 2
Q ss_pred CHHHHHHHHHHhhcc--CCCcEEEEecCcch-----hccCHHHHHHHHHHcCCcEEEec---CCC-----hhhHHHHHHH
Q 021527 123 NFNAILSMLKEVVPQ--MSCPIALFTYYNPI-----LKRGVDNFMSTVRDIGIRGLVVP---DVP-----LEETESLQKE 187 (311)
Q Consensus 123 ~~~~~~~~i~~ir~~--~~iPiilm~Y~n~i-----~~~g~~~fi~~~~~aGadGviip---Dlp-----~ee~~~~~~~ 187 (311)
+++.+... .++|+++..--+.- +..-.-..++++...|+|+|-+. --. +++..+.+..
T Consensus 66 -------~~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~ 138 (265)
T COG1830 66 -------IARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETEREMIENISQVVED 138 (265)
T ss_pred -------HHhhcCccccCCcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHH
Confidence 44444332 37898887422211 11111235678889999987663 111 2346677889
Q ss_pred HHHcCCCeEEEeCCCChH---------HHHHHHHHh--CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEe
Q 021527 188 AMKNKIELVLFTTPTTPT---------DRMKAIVEA--SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVG 256 (311)
Q Consensus 188 ~~~~gi~~I~lisp~t~~---------eri~~i~~~--a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vG 256 (311)
|.++|+..+..+.|..+. +-+...++. ..|...+= ...||.. +-.+++-+.+.+||++.
T Consensus 139 a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK--~~ytg~~--------e~F~~vv~~~~vpVvia 208 (265)
T COG1830 139 AHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIK--TKYTGDP--------ESFRRVVAACGVPVVIA 208 (265)
T ss_pred HHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEe--ecCCCCh--------HHHHHHHHhCCCCEEEe
Confidence 999999988876554332 122211111 12333221 1244432 44666666778999999
Q ss_pred eCCCC------HHHHHHHHHcCCcEEEEhhHhhc
Q 021527 257 FGISK------PEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 257 fGIst------~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+|=++ .+.+.++.+.||-|+++|=-+..
T Consensus 209 GG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ 242 (265)
T COG1830 209 GGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQ 242 (265)
T ss_pred CCCCCCChHHHHHHHHHHHHccCcchhhhhhhhc
Confidence 99887 34567778999999999977776
No 295
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.58 E-value=0.022 Score=53.10 Aligned_cols=203 Identities=14% Similarity=0.159 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHHCCCCEEEEcC--CCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 77 STTAEALKLLDSCGSDIIELGV--PYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~--PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+.+.++.+.+.|+.++-=|. |=+.|+.= .|... +.++++++++++.++|++--.+ +
T Consensus 29 e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf-------------~G~G~-~gl~~L~~~~~~~Gl~~~Tev~-d----- 88 (250)
T PRK13397 29 DHIRLAASSAKKLGYNYFRGGAYKPRTSAASF-------------QGLGL-QGIRYLHEVCQEFGLLSVSEIM-S----- 88 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEecccCCCCCCccc-------------CCCCH-HHHHHHHHHHHHcCCCEEEeeC-C-----
Confidence 6789999999999998887652 11333221 34444 4788999999999999877432 1
Q ss_pred CHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCC-C-ChHHH---HHHHHHhCC-ceEEEEecCCcc
Q 021527 155 GVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTP-T-TPTDR---MKAIVEASE-GFVYLVSSIGVT 228 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp-~-t~~er---i~~i~~~a~-gfiY~vs~~G~T 228 (311)
..-++.+.+ .+|.+-|+-..... ..+..++.+.|. +|.+-.. . +.+|. ++.+.+... .++.| ..|++
T Consensus 89 --~~~v~~~~e-~vdilqIgs~~~~n-~~LL~~va~tgk-PVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~--eRg~~ 161 (250)
T PRK13397 89 --ERQLEEAYD-YLDVIQVGARNMQN-FEFLKTLSHIDK-PILFKRGLMATIEEYLGALSYLQDTGKSNIILC--ERGVR 161 (250)
T ss_pred --HHHHHHHHh-cCCEEEECcccccC-HHHHHHHHccCC-eEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEE--ccccC
Confidence 345666666 59999998543333 335566666674 4555544 2 33332 222322222 23333 22555
Q ss_pred CCCCCCC-chHHHHHHHHhhcCCCcEEEeeCCCCH-------HHHHHHHHcCCcEEEEhhHhhc--hhhhcCCchhHHHH
Q 021527 229 GARASIS-GHVQTLLREIKESSTKPVAVGFGISKP-------EHVQQVAGWGADGVIVGSAMVK--LLGEAQSPEEGLKE 298 (311)
Q Consensus 229 G~~~~~~-~~~~~~l~~vk~~~~~Pv~vGfGIst~-------e~v~~v~~~GADGvIVGSaiv~--~~~~~~~~~~~~~~ 298 (311)
+..+... .-...-+..+|+.+++||++|.. ++. .-.......||||++|=+.+-- .+.++ ...-.+++
T Consensus 162 ~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~S-Hs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~sD~-~q~l~~~~ 239 (250)
T PRK13397 162 GYDVETRNMLDIMAVPIIQQKTDLPIIVDVS-HSTGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALSDA-AQQIDYKQ 239 (250)
T ss_pred CCCCccccccCHHHHHHHHHHhCCCeEECCC-CCCcccchHHHHHHHHHHhCCCEEEEEecCCcccccCch-hhhCCHHH
Confidence 5432211 11124577888888999999866 432 3356667899999997654432 11111 01122778
Q ss_pred HHHHHHHHHh
Q 021527 299 LEKFAKSLKS 308 (311)
Q Consensus 299 ~~~~~~~l~~ 308 (311)
+++++++++.
T Consensus 240 l~~l~~~~~~ 249 (250)
T PRK13397 240 LEQLGQELWQ 249 (250)
T ss_pred HHHHHHHhcc
Confidence 8888888764
No 296
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=97.57 E-value=0.011 Score=55.28 Aligned_cols=181 Identities=19% Similarity=0.244 Sum_probs=110.8
Q ss_pred EEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcEEE
Q 021527 67 PYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPIAL 144 (311)
Q Consensus 67 ~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPiil 144 (311)
||---|.-|.+.+.+.++.|.+.|+|.|-+.--- | ...-.+.++..++++.+++.. ++||++
T Consensus 8 Pf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~Gst------G----------E~~~ls~~Er~~l~~~~~~~~~~~~~vi~ 71 (281)
T cd00408 8 PFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTT------G----------EAPTLTDEERKEVIEAVVEAVAGRVPVIA 71 (281)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCC------c----------ccccCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 4445577888999999999999999999885111 1 112246667777777776653 688887
Q ss_pred EecCcchhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCCC-----ChHHHHHHHHH
Q 021527 145 FTYYNPILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTPT-----TPTDRMKAIVE 213 (311)
Q Consensus 145 m~Y~n~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp~-----t~~eri~~i~~ 213 (311)
-.-.+... ...+..+.+.++|+|++++. - ...++..+ |...+...++..+++=.|. .+.+-++++++
T Consensus 72 gv~~~~~~--~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 72 GVGANSTR--EAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred ecCCccHH--HHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence 65443221 23457778899999999883 1 12245555 4555555677777664443 23466666654
Q ss_pred hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 214 ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 214 ~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
-..++.+ +... .+. ..+.++++.. +..++.|. -+.+-..+..|++|.+-|++
T Consensus 150 -~~~v~gi---------K~s~-~d~-~~~~~~~~~~~~~~~v~~G~----d~~~~~~l~~G~~G~i~~~~ 203 (281)
T cd00408 150 -HPNIVGI---------KDSS-GDL-DRLTRLIALLGPDFAVLSGD----DDLLLPALALGADGAISGAA 203 (281)
T ss_pred -CCCEEEE---------EeCC-CCH-HHHHHHHHhcCCCeEEEEcc----hHHHHHHHHcCCCEEEehHH
Confidence 3444433 1111 112 3444554443 34454443 35677777899999999964
No 297
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.00076 Score=62.66 Aligned_cols=125 Identities=22% Similarity=0.284 Sum_probs=76.6
Q ss_pred HHHHHHHcCCcEEEecC----CChhhHH----HHHHHHHHcCCCeEEEeCCCChHHH------------HHHHHH-hCC-
Q 021527 159 FMSTVRDIGIRGLVVPD----VPLEETE----SLQKEAMKNKIELVLFTTPTTPTDR------------MKAIVE-ASE- 216 (311)
Q Consensus 159 fi~~~~~aGadGviipD----lp~ee~~----~~~~~~~~~gi~~I~lisp~t~~er------------i~~i~~-~a~- 216 (311)
....++++|++++|+.. ..+.|.. .-.+.+.++|+.+|+-+. .+-++| ++.... ...
T Consensus 80 S~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvG-Etl~~reag~t~~v~~~Ql~~~l~~l~~~ 158 (251)
T COG0149 80 SAEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVG-ETLEEREAGKTLEVLKRQLAAALAALSPE 158 (251)
T ss_pred CHHHHHHcCCCEEEECccccccccccchHHHHHHHHHHHHCCCeEEEEcC-CCHHHHhccChHHHHHHHHHHHHhhcCcc
Confidence 45678999999999963 2223333 445678899998776555 343322 111111 122
Q ss_pred --ceEEEEe--cCCccCCCCC--CCchHHHHHHHHhhc-----CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 217 --GFVYLVS--SIGVTGARAS--ISGHVQTLLREIKES-----STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 217 --gfiY~vs--~~G~TG~~~~--~~~~~~~~l~~vk~~-----~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
-+|-|.+ ..| ||-... .+..+...|+.+... .++||.+|++|+..+..+.+...++||+.||++-++.
T Consensus 159 ~~~vIAYEPvWAIG-TG~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka 237 (251)
T COG0149 159 ANIVIAYEPVWAIG-TGKSASPADAEEVHAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKA 237 (251)
T ss_pred cCeEEEECCHHHhc-CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecc
Confidence 3444432 333 564322 122344455554433 2689999999997666666778899999999999873
No 298
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=97.54 E-value=0.0011 Score=61.30 Aligned_cols=122 Identities=21% Similarity=0.295 Sum_probs=77.5
Q ss_pred HHHHHHHcCCcEEEecCC--------ChhhHHHHHHHHHHcCCCeEEEeCCCChHHH--------HHHHHHh--------
Q 021527 159 FMSTVRDIGIRGLVVPDV--------PLEETESLQKEAMKNKIELVLFTTPTTPTDR--------MKAIVEA-------- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipDl--------p~ee~~~~~~~~~~~gi~~I~lisp~t~~er--------i~~i~~~-------- 214 (311)
-.+.++++|++.+++..- ..+....-...+.++|+.+|+-+.- +.++| +....+.
T Consensus 76 S~~mL~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE-~~~~r~~~~~~~~~~~Ql~~~l~~~~~~ 154 (242)
T cd00311 76 SAEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGE-TLEEREAGKTEEVVAAQLAAVLAGVEDL 154 (242)
T ss_pred CHHHHHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCC-CHHHHHcCCHHHHHHHHHHHHHhcchhh
Confidence 456789999999999631 2223444456778899988876664 33444 1111111
Q ss_pred CCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhcC---------CCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHh
Q 021527 215 SEGFVYLVS--SIGVTGARASISGHVQTLLREIKESS---------TKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAM 282 (311)
Q Consensus 215 a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~~---------~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSai 282 (311)
..-+|-|.+ ..| ||.. ..+.+..+..+.+|+.. ++||++|++|+ ++|+++++..+ .||+-||++-
T Consensus 155 ~~~iIAYEPvWAIG-tG~~-as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV~-~~N~~~l~~~~~vDG~LVG~As 231 (242)
T cd00311 155 APVVIAYEPVWAIG-TGKT-ASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVN-PENAAELLAQPDIDGVLVGGAS 231 (242)
T ss_pred cCeEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHHhcccccCceeEEECCCCC-HHHHHHHhcCCCCCEEEeehHh
Confidence 122333322 223 5542 22344556666666532 47999999998 59999999988 9999999998
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 232 l~ 233 (242)
T cd00311 232 LK 233 (242)
T ss_pred hC
Confidence 86
No 299
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=97.53 E-value=0.0083 Score=55.88 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=88.6
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+...+.++.+.+.|||+|.+|.-.. ..| +. ++..+++..+++.+++|+-+.+|-
T Consensus 24 ~~d~~~~~A~~~~~~GAdiIDIG~~~~--~~~-~~---------------ee~~r~v~~i~~~~~~piSIDT~~------ 79 (252)
T cd00740 24 DYDEALDVARQQVEGGAQILDLNVDYG--GLD-GV---------------SAMKWLLNLLATEPTVPLMLDSTN------ 79 (252)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCC--CCC-HH---------------HHHHHHHHHHHHhcCCcEEeeCCc------
Confidence 347788999999999999999997321 111 11 112233334444468999998862
Q ss_pred CHHHHHHHHHHc--CCcEEEecCCChh----hHHHHHHHHHHcCCCeEEEeC-----CCChHHHHHHH---HH---hCCc
Q 021527 155 GVDNFMSTVRDI--GIRGLVVPDVPLE----ETESLQKEAMKNKIELVLFTT-----PTTPTDRMKAI---VE---ASEG 217 (311)
Q Consensus 155 g~~~fi~~~~~a--GadGviipDlp~e----e~~~~~~~~~~~gi~~I~lis-----p~t~~eri~~i---~~---~a~g 217 (311)
-+.++.+.+. |++ ++.|+..+ +..++.+.++++|...|.+.. |.+.++|.... .+ ...|
T Consensus 80 --~~v~e~aL~~~~G~~--iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g~p~t~~~~~~~~~~~~~~~~~~~g 155 (252)
T cd00740 80 --WEVIEAGLKCCQGKC--VVNSINLEDGEERFLKVARLAKEHGAAVVVLAFDEQGQAKTRDKKVEIAERAYEALTEFVG 155 (252)
T ss_pred --HHHHHHHHhhCCCCc--EEEeCCCCCCccccHHHHHHHHHhCCCEEEeccCCCCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 2345555554 877 45665433 355677788999988887765 55555443221 11 1234
Q ss_pred ----eEEEEecCCccCCC-CCCCchHHHHHHH---Hhhc-CCCcEEEeeC
Q 021527 218 ----FVYLVSSIGVTGAR-ASISGHVQTLLRE---IKES-STKPVAVGFG 258 (311)
Q Consensus 218 ----fiY~vs~~G~TG~~-~~~~~~~~~~l~~---vk~~-~~~Pv~vGfG 258 (311)
-+++-...|.-++. ...+..+.+.+++ +|+. .+.|+++|-+
T Consensus 156 i~~~~IiiDPgig~~~~~~~e~~~~~l~~l~~~~~~~~~~p~~pil~G~S 205 (252)
T cd00740 156 FPPEDIIFDPLILPIATGIEEHRPYALETIDAIRMIKERLPAVKISLGVS 205 (252)
T ss_pred CCHHHEEEeCCcccccCccHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 46665555532221 0111123333444 4443 3789999744
No 300
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=97.53 E-value=0.0026 Score=61.35 Aligned_cols=128 Identities=20% Similarity=0.274 Sum_probs=80.1
Q ss_pred CCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCC-ChHHHHHHHHHhCC
Q 021527 138 MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPT-TPTDRMKAIVEASE 216 (311)
Q Consensus 138 ~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~-t~~eri~~i~~~a~ 216 (311)
+++||+.- |.....-.+++..+.+.|.=|++-...+.++..+..+.+++. +.....+.++ ...++++.+.+ .
T Consensus 33 l~~Piv~a----pM~~vt~~~ma~ava~~GglGvi~~~~~~~~~~~~i~~vk~~-l~v~~~~~~~~~~~~~~~~l~e--a 105 (325)
T cd00381 33 LNIPLVSA----PMDTVTESEMAIAMARLGGIGVIHRNMSIEEQAEEVRKVKGR-LLVGAAVGTREDDKERAEALVE--A 105 (325)
T ss_pred cCCCEEec----CCCcCCcHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHhccC-ceEEEecCCChhHHHHHHHHHh--c
Confidence 67898762 222222357888899999999988777777766665555531 1111222221 11356666655 3
Q ss_pred ceEEE-EecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 217 GFVYL-VSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 217 gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
|..++ ++.. .| .+....+.++++|+.. ++||++ +.+.|+++++++.++|||+++||
T Consensus 106 gv~~I~vd~~--~G----~~~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 106 GVDVIVIDSA--HG----HSVYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred CCCEEEEECC--CC----CcHHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 44333 3221 12 1234667899999876 488877 45567999999999999999984
No 301
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=97.53 E-value=0.0027 Score=62.78 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHcC--CCeEEEeCCCChHHHHHHHHHhC-CceEEEEecCCccCCCC-------CCCchHHHHHHHHhhc
Q 021527 179 EETESLQKEAMKNK--IELVLFTTPTTPTDRMKAIVEAS-EGFVYLVSSIGVTGARA-------SISGHVQTLLREIKES 248 (311)
Q Consensus 179 ee~~~~~~~~~~~g--i~~I~lisp~t~~eri~~i~~~a-~gfiY~vs~~G~TG~~~-------~~~~~~~~~l~~vk~~ 248 (311)
++..++.+.+++.. ..++.-..+....+.+...++.. -.+|-+....|.||... +++ ....+.++++.
T Consensus 199 ~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~p--t~~~L~~v~~~ 276 (392)
T cd02808 199 EDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLP--TELGLARAHQA 276 (392)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCcc--HHHHHHHHHHH
Confidence 44566777777764 33333334432234444444433 34444333335565431 222 22334443332
Q ss_pred -------CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 249 -------STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 249 -------~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.++||++.+||.++.|+.+.+..|||+|-+|+++...+
T Consensus 277 ~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al 321 (392)
T cd02808 277 LVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIAL 321 (392)
T ss_pred HHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhc
Confidence 26899999999999999999999999999999999765
No 302
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=97.52 E-value=0.0048 Score=62.80 Aligned_cols=166 Identities=16% Similarity=0.236 Sum_probs=96.6
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC-CcEEEEecCcchhcc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS-CPIALFTYYNPILKR 154 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~-iPiilm~Y~n~i~~~ 154 (311)
.++-+++++.|++.|+|.||+|+|-+.| + + ++.++++++... ..+..++-.+
T Consensus 22 ~e~K~~ia~~L~~~GV~~IEvG~p~~s~---~------------------d-~e~v~~i~~~~~~~~i~al~r~~----- 74 (494)
T TIGR00973 22 VEEKLQIALALERLGVDIIEAGFPVSSP---G------------------D-FEAVQRIARTVKNPRVCGLARCV----- 74 (494)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCH---H------------------H-HHHHHHHHHhCCCCEEEEEcCCC-----
Confidence 4778999999999999999999998754 1 0 234555544333 3344444222
Q ss_pred CHHHHHHHHHHc----CCcEEEe--c--CCC--------hhh----HHHHHHHHHHcCCCeEEEeC--CCChHHHHHHHH
Q 021527 155 GVDNFMSTVRDI----GIRGLVV--P--DVP--------LEE----TESLQKEAMKNKIELVLFTT--PTTPTDRMKAIV 212 (311)
Q Consensus 155 g~~~fi~~~~~a----GadGvii--p--Dlp--------~ee----~~~~~~~~~~~gi~~I~lis--p~t~~eri~~i~ 212 (311)
.+.++.+.++ +.+.+.+ + |+- .+| ..+..+.++++|....+..- -.++.+.+.++.
T Consensus 75 --~~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~ 152 (494)
T TIGR00973 75 --EKDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIV 152 (494)
T ss_pred --HHhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHH
Confidence 3445555544 5666555 2 211 122 45677788999986444321 123345554444
Q ss_pred Hh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC----CcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 213 EA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESST----KPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 213 ~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~----~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
+. ....+++.... |. ..|..+.++++.+++.++ +|+-+ .+|...+. ....+++||+.|
T Consensus 153 ~~~~~~Ga~~i~l~DTv---G~--~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvAN-alaAv~aGa~~v 222 (494)
T TIGR00973 153 EAAINAGATTINIPDTV---GY--ALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVAN-SLAAVQNGARQV 222 (494)
T ss_pred HHHHHcCCCEEEeCCCC---CC--CCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHH-HHHHHHhCCCEE
Confidence 43 22345555544 43 356778899999988753 34433 33555444 445557899865
No 303
>PRK12999 pyruvate carboxylase; Reviewed
Probab=97.51 E-value=0.0048 Score=68.58 Aligned_cols=181 Identities=16% Similarity=0.094 Sum_probs=110.5
Q ss_pred ChhhHHHHHHHHHHC--CCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEe-----
Q 021527 75 DLSTTAEALKLLDSC--GSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFT----- 146 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~--GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~----- 146 (311)
..++.+.+++.|+++ |++.||+|.. ..-..+.+.+ +-+- ++.++++|+. .++|+..+.
T Consensus 553 ~~~d~l~ia~~l~~~~~g~~siE~~gg---------atfd~~~r~l--~e~p---~erl~~~r~~~~~~~~q~l~Rg~n~ 618 (1146)
T PRK12999 553 RTKDLLRIAPATARLLPNLFSLEMWGG---------ATFDVAYRFL--KEDP---WERLAELREAAPNVLFQMLLRGSNA 618 (1146)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEeeCC---------cchhhhcccc--CCCH---HHHHHHHHHhCCCCeEEEEeccccc
Confidence 346889999999999 9999999832 1112222221 1111 3456666654 467766553
Q ss_pred --cCcchhccCHHHHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCCCe---EEEe----CCCC---hHHH----H
Q 021527 147 --YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKIEL---VLFT----TPTT---PTDR----M 208 (311)
Q Consensus 147 --Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi~~---I~li----sp~t---~~er----i 208 (311)
|-| .-..-.++|++.++++|+|.+-+-|-.. +......+.+++.|... +.+. .|+. +.+. .
T Consensus 619 vgy~~-yp~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a 697 (1146)
T PRK12999 619 VGYTN-YPDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLA 697 (1146)
T ss_pred ccccC-CCchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHH
Confidence 322 1112346799999999999999976443 34555677778888522 1222 1222 3333 3
Q ss_pred HHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 209 KAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 209 ~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
+++.+..-.-+++-...| . -.|..+.++++.+|+.+++||-+ .+|... .+.-...++|||.|
T Consensus 698 ~~l~~~Ga~~i~ikDt~G---~--l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~-an~laA~~aGad~v 763 (1146)
T PRK12999 698 KELEKAGAHILAIKDMAG---L--LKPAAAYELVSALKEEVDLPIHLHTHDTSGNGL-ATYLAAAEAGVDIV 763 (1146)
T ss_pred HHHHHcCCCEEEECCccC---C--CCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHH-HHHHHHHHhCCCEE
Confidence 333333333455544333 2 34667889999999988999876 556654 45566778999876
No 304
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.48 E-value=0.004 Score=66.49 Aligned_cols=153 Identities=14% Similarity=0.209 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHCCCCEEEEc-----------CCCCCCCCChHHHHHHHHHHHHcCCC----HHHHHHHHHHhhccC--CC
Q 021527 78 TTAEALKLLDSCGSDIIELG-----------VPYSDPLADGPVIQAAATRSLARGTN----FNAILSMLKEVVPQM--SC 140 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG-----------~PfsDP~aDGp~Iq~a~~~Al~~G~~----~~~~~~~i~~ir~~~--~i 140 (311)
.+.+.++.+.++|.|+|||- -|.++---| +.|-+ ++-.+++++.||+.+ +.
T Consensus 552 ~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD------------~yGGslenR~r~~~eiv~~ir~~~~~~~ 619 (765)
T PRK08255 552 DFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTD------------EYGGSLENRLRYPLEVFRAVRAVWPAEK 619 (765)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCC------------CCCCCHHHHhHHHHHHHHHHHHhcCCCC
Confidence 57788889999999999993 233222222 12322 234567888888764 46
Q ss_pred cEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEE
Q 021527 141 PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVY 220 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY 220 (311)
||.+-. |+ .++.+ ..+.+||..++.+.+.+.|++.|-+.+..+..+. ..
T Consensus 620 ~v~~ri--~~------~~~~~------------~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~--------~~--- 668 (765)
T PRK08255 620 PMSVRI--SA------HDWVE------------GGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDE--------KP--- 668 (765)
T ss_pred eeEEEE--cc------ccccC------------CCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCC--------CC---
Confidence 776632 21 11110 1134567777888888888887766544321000 00
Q ss_pred EEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 221 ~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
..+ . .. ...+.+++|+.+++||++.++|++++++.++++.| +|.|-+|-.++.
T Consensus 669 ---~~~---~--~~---~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 669 ---VYG---R--MY---QTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARPHLA 722 (765)
T ss_pred ---CcC---c--cc---cHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh
Confidence 000 0 01 12456788888899999999999999999999876 999999988775
No 305
>PRK14847 hypothetical protein; Provisional
Probab=97.48 E-value=0.0034 Score=60.73 Aligned_cols=175 Identities=11% Similarity=0.096 Sum_probs=99.8
Q ss_pred eCCCC-ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC----CCcEEE
Q 021527 70 TAGDP-DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM----SCPIAL 144 (311)
Q Consensus 70 ~~G~P-~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~----~iPiil 144 (311)
++|-+ +.++-+++++.|++.|+|.||+|+|-+.+ +-++.+++|.+.. ++.+..
T Consensus 46 ~pGv~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~s~----------------------~e~e~ir~I~~~~~~~~~~~i~~ 103 (333)
T PRK14847 46 ALIEPMDGARKLRLFEQLVAVGLKEIEVAFPSASQ----------------------TDFDFVRKLIDERRIPDDVTIEA 103 (333)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEeeCCCCCH----------------------HHHHHHHHHHHhCCCCCCcEEEE
Confidence 45553 35778999999999999999999998543 1245677775542 233433
Q ss_pred EecCcchhccCHHHHHHHHHHcCCc----EEEe--c--CCCh--------hh----HHHHHHHHHHcCC-----C-eEEE
Q 021527 145 FTYYNPILKRGVDNFMSTVRDIGIR----GLVV--P--DVPL--------EE----TESLQKEAMKNKI-----E-LVLF 198 (311)
Q Consensus 145 m~Y~n~i~~~g~~~fi~~~~~aGad----Gvii--p--Dlp~--------ee----~~~~~~~~~~~gi-----~-~I~l 198 (311)
++ ....+.++.+.+++.+ .|.+ | |+-. ++ ..+..+.+++++. . .|-+
T Consensus 104 ~~-------r~~~~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~ 176 (333)
T PRK14847 104 LT-------QSRPDLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEY 176 (333)
T ss_pred Ee-------cCcHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEE
Confidence 33 2335667767666554 3555 2 2211 22 4455667788854 1 2333
Q ss_pred eC---CCChHHHHHHHHHhC---C-----ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC----CCcEEE----eeCC
Q 021527 199 TT---PTTPTDRMKAIVEAS---E-----GFVYLVSSIGVTGARASISGHVQTLLREIKESS----TKPVAV----GFGI 259 (311)
Q Consensus 199 is---p~t~~eri~~i~~~a---~-----gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~----~~Pv~v----GfGI 259 (311)
.. ..+..+.+.++.+.+ - |...+ +..-+.|. ..|..+.+.++.+++.+ ++|+-+ .+|.
T Consensus 177 ~~EDasRad~dfL~~~~~~a~~~~ga~r~~a~~i-~l~DTVG~--~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~Gl 253 (333)
T PRK14847 177 SPETFSLAELDFAREVCDAVSAIWGPTPQRKMII-NLPATVES--STANVYADQIEWMHRSLARRDCIVLSVHPHNDRGT 253 (333)
T ss_pred eeecCCCCCHHHHHHHHHHHHHHhCCCccCCcEE-EeCCcccc--CCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCch
Confidence 22 223445555554421 1 22222 22234554 24556778899888765 455544 4555
Q ss_pred CCHHHHHHHHHcCCcEEE
Q 021527 260 SKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 260 st~e~v~~v~~~GADGvI 277 (311)
.. .+....+++||+.+=
T Consensus 254 A~-ANslaA~~aGa~~i~ 270 (333)
T PRK14847 254 AV-AAAELAVLAGAERIE 270 (333)
T ss_pred HH-HHHHHHHHhCCCEEE
Confidence 54 445566779999873
No 306
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=97.48 E-value=0.016 Score=54.14 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=75.1
Q ss_pred HHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH----cCCCHHHHH
Q 021527 53 TFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA----RGTNFNAIL 128 (311)
Q Consensus 53 ~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~----~G~~~~~~~ 128 (311)
.|.++++++++. ..+++=|. -.++.++++|+|+|-.| |+ . +...+. ..+++++.+
T Consensus 3 ~lr~l~~~~~~l--~~~~ayD~------~sA~l~e~aG~d~i~vG--------ds-~----~~~~lG~pDt~~vtl~em~ 61 (254)
T cd06557 3 DLQKMKKAGEKI--VMLTAYDY------PTAKLADEAGVDVILVG--------DS-L----GMVVLGYDSTLPVTLDEMI 61 (254)
T ss_pred hHHHHHhCCCcE--EEEeCCCH------HHHHHHHHcCCCEEEEC--------HH-H----HHHHcCCCCCCCcCHHHHH
Confidence 366666665543 34444443 56777889999999876 11 1 001111 126889999
Q ss_pred HHHHHhhccCCCc-EEEEe----cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeE
Q 021527 129 SMLKEVVPQMSCP-IALFT----YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 196 (311)
Q Consensus 129 ~~i~~ir~~~~iP-iilm~----Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I 196 (311)
..++.|++-.+.| ++... |.|.... ..++-.+.++++|++||-+=|- +|..+..+.+.+.|+.+.
T Consensus 62 ~~~~~V~r~~~~p~viaD~~fg~y~~~~~~-av~~a~r~~~~aGa~aVkiEd~--~~~~~~I~al~~agipV~ 131 (254)
T cd06557 62 YHTRAVRRGAPRALVVADMPFGSYQTSPEQ-ALRNAARLMKEAGADAVKLEGG--AEVAETIRALVDAGIPVM 131 (254)
T ss_pred HHHHHHHhcCCCCeEEEeCCCCcccCCHHH-HHHHHHHHHHHhCCeEEEEcCc--HHHHHHHHHHHHcCCCee
Confidence 9999999888999 55422 3331110 0223344556699999999875 466667777888897654
No 307
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=97.47 E-value=0.0044 Score=56.28 Aligned_cols=197 Identities=18% Similarity=0.238 Sum_probs=110.1
Q ss_pred HHHHHHHHHcC-CccEEEEEeCCCCChh------hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCC
Q 021527 51 AETFTRLKKQG-KVALIPYITAGDPDLS------TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN 123 (311)
Q Consensus 51 ~~~f~~~~~~~-~~~li~yi~~G~P~~~------~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~ 123 (311)
++.+..++... ++.+|.=+---.|+.. ...+++.+..++|+..|-+= .|| ...+ -+
T Consensus 58 ~dF~~~Lr~shk~p~liAEVKrASPSkG~ik~d~~~ae~A~~Yak~GAs~iSVL---Te~----k~Fk----------Gs 120 (289)
T KOG4201|consen 58 QDFYGALRSSHKRPGLIAEVKRASPSKGIIKLDANAAEQALAYAKGGASCISVL---TEP----KWFK----------GS 120 (289)
T ss_pred HHHHHHHHHhcccchHHHHHhhcCCCCCccccccCHHHHHHHHHhcCceeeeee---cCc----hhhc----------cc
Confidence 44445555442 4455544433334331 36789999999999999883 333 1111 02
Q ss_pred HHHHHHHHHHhhc--cCCCc---EEEEecCcchhccCHHHHHHHHHHcCCcEEEec--CCChhhHHHHHHHHHHcCCCeE
Q 021527 124 FNAILSMLKEVVP--QMSCP---IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP--DVPLEETESLQKEAMKNKIELV 196 (311)
Q Consensus 124 ~~~~~~~i~~ir~--~~~iP---iilm~Y~n~i~~~g~~~fi~~~~~aGadGviip--Dlp~ee~~~~~~~~~~~gi~~I 196 (311)
+ +.+..+|+ .+++| +..--+. ...-+ +=.+.-.|+|.|++- -|+..+..++.+.|+..|++..
T Consensus 121 l----edL~~irk~~~~k~p~~~lL~KeFi-----vd~~Q-I~~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~L 190 (289)
T KOG4201|consen 121 L----EDLVAIRKIAGVKCPPKCLLRKEFI-----VDPYQ-IYEARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPL 190 (289)
T ss_pred H----HHHHHHHHHhcCcCChHhHhHHHHc-----cCHHH-HHHHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcce
Confidence 2 23334443 24555 2221000 00001 112445789988762 3454567788999999999876
Q ss_pred EEeCCCChHHHHHHHHHhCCceEEEEecCCccCCC-CCCCch---HHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC
Q 021527 197 LFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGAR-ASISGH---VQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG 272 (311)
Q Consensus 197 ~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~-~~~~~~---~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G 272 (311)
.=+.. ++.|....+. |.-. + |+.... ..+..+ ...+++-++ -|+-++.-.||.||+|+..+...|
T Consensus 191 VEVn~---~eEm~ralei--Gakv-v---GvNNRnL~sFeVDlstTskL~E~i~--kDvilva~SGi~tpdDia~~q~~G 259 (289)
T KOG4201|consen 191 VEVND---EEEMQRALEI--GAKV-V---GVNNRNLHSFEVDLSTTSKLLEGIP--KDVILVALSGIFTPDDIAKYQKAG 259 (289)
T ss_pred eeecc---HHHHHHHHHh--CcEE-E---eecCCccceeeechhhHHHHHhhCc--cceEEEeccCCCCHHHHHHHHHcC
Confidence 54432 3445554443 3321 1 322211 111111 123333333 256677789999999999999999
Q ss_pred CcEEEEhhHhhch
Q 021527 273 ADGVIVGSAMVKL 285 (311)
Q Consensus 273 ADGvIVGSaiv~~ 285 (311)
..+|.||-++++.
T Consensus 260 V~avLVGEslmk~ 272 (289)
T KOG4201|consen 260 VKAVLVGESLMKQ 272 (289)
T ss_pred ceEEEecHHHHhc
Confidence 9999999999984
No 308
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=97.46 E-value=0.03 Score=50.65 Aligned_cols=187 Identities=14% Similarity=0.194 Sum_probs=104.8
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
..+.++.+.+.|||++=+-+.-..|= -++.+..-++.+.+.... .+|.++. | -..+.
T Consensus 10 ~~eda~~~~~~GaD~iGfIf~~~SpR----------------~V~~~~a~~i~~~~~~~~-~~VgVf~--~----~~~~~ 66 (207)
T PRK13958 10 TIKDVTAASQLPIDAIGFIHYEKSKR----------------HQTITQIKKLASAVPNHI-DKVCVVV--N----PDLTT 66 (207)
T ss_pred cHHHHHHHHHcCCCEEEEecCCCCcc----------------cCCHHHHHHHHHhCCCCC-CEEEEEe--C----CCHHH
Confidence 46788899999999998864222331 133333333444443221 2466654 3 23455
Q ss_pred HHHHHHHcCCcEEEecC-CChhhHHHHHHHHHHc--CCCeEEEeCCCCh-HHHHHHHHHhCCceEEEEec---CCccCCC
Q 021527 159 FMSTVRDIGIRGLVVPD-VPLEETESLQKEAMKN--KIELVLFTTPTTP-TDRMKAIVEASEGFVYLVSS---IGVTGAR 231 (311)
Q Consensus 159 fi~~~~~aGadGviipD-lp~ee~~~~~~~~~~~--gi~~I~lisp~t~-~eri~~i~~~a~gfiY~vs~---~G~TG~~ 231 (311)
..+.+.+.|.|.|=++. .+.+ +.+.+++. +++.+..+..... .+.+..+.... .++.+-+. .|.||..
T Consensus 67 i~~~~~~~~~d~vQLHG~e~~~----~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~-d~~LlDs~~~~~GGtG~~ 141 (207)
T PRK13958 67 IEHILSNTSINTIQLHGTESID----FIQEIKKKYSSIKIIKALPADENIIQNINKYKGFV-DLFIIDTPSVSYGGTGQT 141 (207)
T ss_pred HHHHHHhCCCCEEEECCCCCHH----HHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhC-CEEEEcCCCCCCCcCCcE
Confidence 56667789999998874 3333 33334432 3555544433211 11222222222 22222232 2444432
Q ss_pred CCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH--cCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 232 ASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG--WGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 232 ~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~--~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
.+. +.++++ ...|++..+|++ |||+.++.. .+.+||=|=|.+... + ....+++++|++.++.
T Consensus 142 --~dw---~~~~~~---~~~p~iLAGGL~-peNV~~a~~~~~~p~gVDvsSGVE~~-G-----~KD~~ki~~f~~~v~~ 205 (207)
T PRK13958 142 --YDW---TILKHI---KDIPYLIAGGIN-SENIQTVEQLKLSHQGYDIASGIETN-G-----RKDINKMTAIVNIVKG 205 (207)
T ss_pred --eCh---HHhhhc---cCCCEEEECCCC-HHHHHHHHhcCCCCCEEEcccccCCC-C-----CCCHHHHHHHHHHHHh
Confidence 333 334443 346999999996 999999764 468999888877642 1 2346889999998875
No 309
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=97.45 E-value=0.0028 Score=57.39 Aligned_cols=178 Identities=20% Similarity=0.323 Sum_probs=100.6
Q ss_pred HHHHHHHHHCCCCEEEEc--CCCCCCCCChHHHHHHHHHHHHcCC-CHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 80 AEALKLLDSCGSDIIELG--VPYSDPLADGPVIQAAATRSLARGT-NFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG--~PfsDP~aDGp~Iq~a~~~Al~~G~-~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
.+.++..+++|+=.+..= +|- | .|+ ..|+ ++.+ ..+|++|+..+++|+..-. + +
T Consensus 31 ~eQA~iAE~aGACaVmalervPa-----d--------iR~-~GgV~RMsD-P~mIKei~~aVsiPVMAk~------R--i 87 (296)
T KOG1606|consen 31 AEQARIAEEAGACAVMALERVPA-----D--------IRA-QGGVARMSD-PRMIKEIKNAVSIPVMAKV------R--I 87 (296)
T ss_pred HHHHHHHHhcCcceEeeeccCCH-----h--------HHh-cCCeeecCC-HHHHHHHHHhccchhhhhh------h--h
Confidence 578888889998877652 121 1 111 1121 1111 3599999999999976532 1 2
Q ss_pred HHHHH--HHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCC---
Q 021527 157 DNFMS--TVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGAR--- 231 (311)
Q Consensus 157 ~~fi~--~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~--- 231 (311)
..|++ .+...|+|-+=-..+. ....+...+.+|+++.-+.+.....-|.++.|.+-+ ..|-.- ....||.-
T Consensus 88 GHFVEAQIlE~l~vDYiDESEvl--t~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGA-AMIRtk-GeagTG~v~Ea 163 (296)
T KOG1606|consen 88 GHFVEAQILEALGVDYIDESEVL--TPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGA-AMIRTK-GEAGTGDVSEA 163 (296)
T ss_pred hhhhHHHHHHHhccCccchhhhc--ccccccchhhhhcCcCceeeccccHHHHHHHHhhch-hhheec-cccCCCcHHHH
Confidence 34665 3556677754111000 012234556788887555555444445555553311 111111 01123320
Q ss_pred ---------------CCCCchH----------HHHHHHHhhcCCCcE--EEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 232 ---------------ASISGHV----------QTLLREIKESSTKPV--AVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 232 ---------------~~~~~~~----------~~~l~~vk~~~~~Pv--~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
+..+.++ .+++++.++.-.+|| +..+||.||.|+..+.+.|+|||.|||.+.+
T Consensus 164 Vkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 164 VKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHcCCCceEEecccCcCChhHHHHHHHcCCCeEEecccccc
Confidence 0011111 345566666556786 3578999999999999999999999999987
No 310
>PLN02321 2-isopropylmalate synthase
Probab=97.45 E-value=0.0066 Score=63.44 Aligned_cols=166 Identities=19% Similarity=0.255 Sum_probs=94.0
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--------CCcEE-EEe
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--------SCPIA-LFT 146 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--------~iPii-lm~ 146 (311)
.++-+++++.|++.|+|.||+|+|+..|- |- +.++.+.+.. -+|.+ .++
T Consensus 107 ~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~-D~---------------------e~vr~i~~~~~~~v~~~~~v~~i~a~~ 164 (632)
T PLN02321 107 SKEKLDIARQLAKLGVDIIEAGFPIASPD-DL---------------------EAVKTIAKEVGNEVDEDGYVPVICGLS 164 (632)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCcCCCcc-HH---------------------HHHHHHHHhcccCCCccccceeeeeeh
Confidence 36789999999999999999999998773 21 2233332221 12322 222
Q ss_pred cCcchhccCHHHHHHHHHHcC--Cc--EEEe--c--CC--------Chhh----HHHHHHHHHHcCCCeEEEeCC---CC
Q 021527 147 YYNPILKRGVDNFMSTVRDIG--IR--GLVV--P--DV--------PLEE----TESLQKEAMKNKIELVLFTTP---TT 203 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aG--ad--Gvii--p--Dl--------p~ee----~~~~~~~~~~~gi~~I~lisp---~t 203 (311)
-.| .+.++.+.+++ ++ .+.+ + |+ ..|| ..+..+.++++|...+.+..+ .+
T Consensus 165 ra~-------~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rt 237 (632)
T PLN02321 165 RCN-------KKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRS 237 (632)
T ss_pred hcc-------HHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCC
Confidence 222 45566666663 22 2322 2 21 2233 556777889998754554332 23
Q ss_pred hHHHHHHHHHh----CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-Cc-EEEee------CCCCHHHHHHHHHc
Q 021527 204 PTDRMKAIVEA----SEGFVYLVSSIGVTGARASISGHVQTLLREIKESST-KP-VAVGF------GISKPEHVQQVAGW 271 (311)
Q Consensus 204 ~~eri~~i~~~----a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~P-v~vGf------GIst~e~v~~v~~~ 271 (311)
+.+.+.++++. .-..+++.. ++|. ..|..+.++++.+++.++ .+ +.+++ |...+ +.-..+++
T Consensus 238 d~d~l~~~~~~a~~aGa~~I~L~D---TvG~--~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvA-NslaAv~A 311 (632)
T PLN02321 238 DPEFLYRILGEVIKAGATTLNIPD---TVGY--TLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTA-NTLAGAHA 311 (632)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecc---cccC--CCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHH-HHHHHHHh
Confidence 45555555443 223345544 3443 356778899999988753 22 44443 44433 34455678
Q ss_pred CCcEE
Q 021527 272 GADGV 276 (311)
Q Consensus 272 GADGv 276 (311)
||+.|
T Consensus 312 GA~~V 316 (632)
T PLN02321 312 GARQV 316 (632)
T ss_pred CCCEE
Confidence 99876
No 311
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=97.45 E-value=0.0037 Score=61.15 Aligned_cols=156 Identities=15% Similarity=0.206 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHH-----HHHHHHcCCCHHH----HHHHHHHhhccCCCcEEEEecC
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA-----ATRSLARGTNFNA----ILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a-----~~~Al~~G~~~~~----~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
.+.+.++.+.++|.|+|||- -+.|-.+.+- +.|--+.|=++++ ++++++.||+.+.-.+ +..-.
T Consensus 160 ~f~~AA~rA~~AGfDGVEIh------~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~-igvRi 232 (362)
T PRK10605 160 DFRQAIANAREAGFDLVELH------SAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADR-IGIRI 232 (362)
T ss_pred HHHHHHHHHHHcCCCEEEEc------ccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCe-EEEEE
Confidence 57888999999999999994 2334444332 2233334444443 3567777777654222 22222
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGV 227 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~ 227 (311)
|+.. ... +.+ .....+| ..++.+.+.+.|++.+-+..+..
T Consensus 233 s~~~------~~~-----~~~----~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~------------------------ 273 (362)
T PRK10605 233 SPLG------TFN-----NVD----NGPNEEADALYLIEQLGKRGIAYLHMSEPDW------------------------ 273 (362)
T ss_pred CCcc------ccc-----cCC----CCCCHHHHHHHHHHHHHHcCCCEEEeccccc------------------------
Confidence 3210 000 011 1123456 57778888888888776543210
Q ss_pred cCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 228 TGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 228 TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.+. .... ..+.+++|+.+++||++++++ +++++.++++.| +|.|-+|-+++.
T Consensus 274 ~~~-~~~~---~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia 326 (362)
T PRK10605 274 AGG-EPYS---DAFREKVRARFHGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred cCC-cccc---HHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh
Confidence 000 0111 245678888889999998886 799999999988 999999988775
No 312
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00047 Score=61.53 Aligned_cols=161 Identities=19% Similarity=0.252 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHH-HcCCCHHHHHHHHHHhhccCCCcEEEEecCc-chhccC
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL-ARGTNFNAILSMLKEVVPQMSCPIALFTYYN-PILKRG 155 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al-~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n-~i~~~g 155 (311)
+.+|-+...+++|+|.||++- || +.|.+.. +-.++.++..+.+|+..|.--. .-|-|.
T Consensus 17 Ds~eSA~nAe~GGAdRiElCS------------------aL~eGGlTPS--vG~l~~~k~~~~iP~ycMiRpR~GDFvYs 76 (255)
T KOG4013|consen 17 DSLESAENAEAGGADRIELCS------------------ALQEGGLTPS--VGFLSILKYKYPIPLYCMIRPRAGDFVYS 76 (255)
T ss_pred hhHHHHHhHhhcCccHhHHhh------------------hhccCCCCCc--chhhhhhhcccccceEEEEecCCCCcccc
Confidence 457888888999999999971 34 2344432 2356667777889999994110 011122
Q ss_pred H------HHHHHHHHHcCCcEEEecCCChh------hHHHHHHHHHHcCCCeEEE-----e--CCCChHHHHHHHHHhCC
Q 021527 156 V------DNFMSTVRDIGIRGLVVPDVPLE------ETESLQKEAMKNKIELVLF-----T--TPTTPTDRMKAIVEASE 216 (311)
Q Consensus 156 ~------~~fi~~~~~aGadGviipDlp~e------e~~~~~~~~~~~gi~~I~l-----i--sp~t~~eri~~i~~~a~ 216 (311)
- ...++.++++|+||+++.-|..+ .+..+...++- + +|.| + .+.+-.|. .+ ..-
T Consensus 77 d~Em~a~~~Dv~llk~~GAdGfVFGaLt~dgsid~~~C~si~~~~rp--l-PVTFHRAfD~~~D~k~~lE~--~l--~~l 149 (255)
T KOG4013|consen 77 DDEMAANMEDVELLKKAGADGFVFGALTSDGSIDRTSCQSIIETARP--L-PVTFHRAFDVAYDWKTCLED--AL--LDL 149 (255)
T ss_pred hHHHHHHHHHHHHHHHcCCCceEEeecCCCCCcCHHHHHHHHHhcCC--C-ceeeeeehhhhcCHHHHHHH--HH--HHh
Confidence 2 24567789999999999655432 23334443332 2 2322 1 12222221 11 124
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHc
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGW 271 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~ 271 (311)
||--+. ++|.+...-+. ...|+++-+.. ++-|+-|.||++ .++++++++
T Consensus 150 GF~rvL----tSG~~psAldG-v~~i~~lie~hkg~i~VmpG~Gi~~-sNl~~ile~ 200 (255)
T KOG4013|consen 150 GFKRVL----TSGQEPSALDG-VYIIRELIELHKGKIDVMPGCGINS-SNLANILEW 200 (255)
T ss_pred hHHHHh----hcCCCcccccc-hHHHHHHHHHhcCCEEEecCCCcch-HHHHHHHhh
Confidence 553222 24443322222 24566655543 567888999986 788888876
No 313
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=97.44 E-value=0.0034 Score=61.50 Aligned_cols=161 Identities=22% Similarity=0.303 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHH-----HHHHHHcCCCHHHH----HHHHHHhhccCCC--cEEEEe
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA-----ATRSLARGTNFNAI----LSMLKEVVPQMSC--PIALFT 146 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a-----~~~Al~~G~~~~~~----~~~i~~ir~~~~i--Piilm~ 146 (311)
.+.+.++...++|.|+|||= =+.|-.|++- ++|--+.|=++++- +++++.+|+.+.- ||.+--
T Consensus 150 ~f~~AA~rA~~AGFDgVEIH------~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rl 223 (363)
T COG1902 150 DFARAARRAKEAGFDGVEIH------GAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRL 223 (363)
T ss_pred HHHHHHHHHHHcCCCEEEEe------eccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 47888889999999999993 2445555442 34444555555543 5566666766543 555532
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcC-CCeEEEeCCCChHHHHHHHHHhCCceEEEEecC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNK-IELVLFTTPTTPTDRMKAIVEASEGFVYLVSSI 225 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~g-i~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~ 225 (311)
+..++ . .++ -+.+||..++.+.+++.| ++.+-++.+..... ....
T Consensus 224 --------s~~d~-~------~~~----g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~---------~~~~------ 269 (363)
T COG1902 224 --------SPDDF-F------DGG----GLTIEEAVELAKALEEAGLVDYIHVSEGGYERG---------GTIT------ 269 (363)
T ss_pred --------Ccccc-C------CCC----CCCHHHHHHHHHHHHhcCCccEEEeecccccCC---------CCcc------
Confidence 22211 0 000 234578888889999999 68877776553210 0000
Q ss_pred CccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 226 GVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
..+ +.....+..++|..+.+|+++-++|++++++.++++.| ||-|-+|-+|+.
T Consensus 270 -~~~-----~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 270 -VSG-----PGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred -ccc-----cchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhc
Confidence 000 11223567778888889999999999999999999998 999999999876
No 314
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.44 E-value=0.0043 Score=60.88 Aligned_cols=39 Identities=33% Similarity=0.312 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.++.+.+++ .++||++ ++|.|+++++++.++|||+|.||
T Consensus 177 ~~i~~~ik~-~~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG 215 (368)
T PRK08649 177 LNLKEFIYE-LDVPVIV-GGCVTYTTALHLMRTGAAGVLVG 215 (368)
T ss_pred HHHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEEC
Confidence 344444444 5899977 66999999999999999999998
No 315
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=97.43 E-value=0.024 Score=53.22 Aligned_cols=210 Identities=13% Similarity=0.234 Sum_probs=132.1
Q ss_pred eCCCCC-hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE-ec
Q 021527 70 TAGDPD-LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF-TY 147 (311)
Q Consensus 70 ~~G~P~-~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm-~Y 147 (311)
.|-..+ .+.+.+.++.|.+.|+|.|-+- |||- |..-...+++.+.++++.++|.+.- +.
T Consensus 7 PP~~~~~~~~l~~~~~~l~~~~pd~isvT--------~~~~-----------~~~~~~t~~~a~~l~~~~g~~~i~Hlt~ 67 (272)
T TIGR00676 7 PPKTDEGEENLWETVDRLSPLDPDFVSVT--------YGAG-----------GSTRDRTVRIVRRIKKETGIPTVPHLTC 67 (272)
T ss_pred CcCCchhHHHHHHHHHHHhcCCCCEEEec--------cCCC-----------CCcHHHHHHHHHHHHHhcCCCeeEEeee
Confidence 333444 3788899999999999999983 2211 1122244567788887777775443 22
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEe--cCCC----------hhhHHHHHHHHHHc-C-CCeEEEeCCC----C--hHHH
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVV--PDVP----------LEETESLQKEAMKN-K-IELVLFTTPT----T--PTDR 207 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGvii--pDlp----------~ee~~~~~~~~~~~-g-i~~I~lisp~----t--~~er 207 (311)
.+ ..+..++..+..+.+.|++.+++ .|-| +..+.++.+.+++. + +..-.-..|. . .++.
T Consensus 68 r~-~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~ 146 (272)
T TIGR00676 68 IG-ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEED 146 (272)
T ss_pred cC-CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHH
Confidence 22 23345677888899999998875 3443 23466777777764 2 2222223333 2 1222
Q ss_pred HHHHH-HhCCceEEEEecCCccCCCCCCC-chHHHHHHHHhhc-CCCcEEEeeC-CCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 208 MKAIV-EASEGFVYLVSSIGVTGARASIS-GHVQTLLREIKES-STKPVAVGFG-ISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 208 i~~i~-~~a~gfiY~vs~~G~TG~~~~~~-~~~~~~l~~vk~~-~~~Pv~vGfG-Ist~e~v~~v~~~GADGvIVGSaiv 283 (311)
++.+. +...|..|++|-. -.+ ..+.++++++++. .++||++|+- +.+..++.++.++ -||-|=..+.
T Consensus 147 ~~~L~~K~~aGA~f~iTQ~-------~fd~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~~--~Gv~vP~~~~ 217 (272)
T TIGR00676 147 IENLKRKVDAGADYAITQL-------FFDNDDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAER--CGAEIPAWLV 217 (272)
T ss_pred HHHHHHHHHcCCCeEeecc-------ccCHHHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHhc--cCCCCCHHHH
Confidence 33222 2344656666422 223 3467888888875 5799999976 7888878777764 6999999999
Q ss_pred chhhhcCCc-----hhHHHHHHHHHHHHHh
Q 021527 284 KLLGEAQSP-----EEGLKELEKFAKSLKS 308 (311)
Q Consensus 284 ~~~~~~~~~-----~~~~~~~~~~~~~l~~ 308 (311)
+.++...+. +.+++...++++++++
T Consensus 218 ~~l~~~~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 218 KRLEKYDDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999754332 2467777777777764
No 316
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=97.42 E-value=0.0018 Score=57.96 Aligned_cols=185 Identities=21% Similarity=0.274 Sum_probs=102.5
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCC-cEEEEecCcchhccCHH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSC-PIALFTYYNPILKRGVD 157 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~i-Piilm~Y~n~i~~~g~~ 157 (311)
..+.++.+.+.|+|++=+-+-.+.|- -++. +.++++.+.... ++.++. | -..+
T Consensus 8 ~~~da~~~~~~g~d~~Gfi~~~~S~R----------------~v~~----~~a~~l~~~~~~~~VgVf~--~----~~~~ 61 (197)
T PF00697_consen 8 RPEDARLAAELGADYLGFIFYPKSPR----------------YVSP----DQARELVSAVPPKIVGVFV--N----QSPE 61 (197)
T ss_dssp SHHHHHHHHHHTSSEEEEE--TTCTT----------------B--H----HHHHHHHCCSSSSEEEEES--S----S-HH
T ss_pred cHHHHHHHHHcCCCEEeeecCCCCCC----------------ccCH----HHHHHHHHhcCCCEEEEEc--C----CCHH
Confidence 46888999999999987753222231 1222 344455444332 455543 4 2345
Q ss_pred HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC-ceEEEEecCCccCCCCCCCc
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE-GFVYLVSSIGVTGARASISG 236 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~-gfiY~vs~~G~TG~~~~~~~ 236 (311)
+.++.+.+.+.|.|=++.- |..++...++ .++..+..+......+..+.+..... .++.+-+..|.||.. ++.
T Consensus 62 ~I~~~~~~~~ld~vQLHG~---e~~e~~~~l~-~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD~~~GgtG~~--~dw 135 (197)
T PF00697_consen 62 EILEIVEELGLDVVQLHGD---ESPEYIKLLR-AGLPVIKAIHVDKDIDLLDYLERYESVDYFLLDSGSGGTGKT--FDW 135 (197)
T ss_dssp HHHHHHHHCTESEEEE-SG---G-HHHHHHHH-TTSEEEEEEEESSCHSCCHHCHCSTT-SEEEEESSSTSSSS-----G
T ss_pred HHHHHHHHcCCCEEEECCC---CCHHHHHHhh-cCceEEEEEEeCCccchHHHHHhcccccEEeEccCCCcCCcc--cCH
Confidence 6677788999999988743 2334444444 46665554433321111222211111 333344566667753 444
Q ss_pred hHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHH
Q 021527 237 HVQTLLREIKES-STKPVAVGFGISKPEHVQQVAG-WGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAK 304 (311)
Q Consensus 237 ~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~ 304 (311)
+ .++.+.+. .+.|+++++||+ |+|+.++.+ .+.+||=|=|.+...-+ ....+++++|++
T Consensus 136 ~---~~~~~~~~~~~~p~iLAGGl~-p~NV~~ai~~~~p~gvDvsSGvE~~pG-----~KD~~ki~~fv~ 196 (197)
T PF00697_consen 136 S---LLKKIVESYSPKPVILAGGLN-PENVREAIRQVRPYGVDVSSGVETSPG-----VKDPEKIKAFVE 196 (197)
T ss_dssp G---GGCCCHHT-GTSTEEEESS---TTTHHHHHHHC--SEEEESGGGEEETT-----EE-HHHHHHHHH
T ss_pred H---HhhhhhhhcccCcEEEEcCCC-hHHHHHHHHhcCceEEEeCCccccCCC-----CCCHHHHHHHHh
Confidence 3 24444332 378999999997 899999998 77999999888877432 234678888876
No 317
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=97.40 E-value=0.022 Score=53.44 Aligned_cols=119 Identities=19% Similarity=0.275 Sum_probs=74.1
Q ss_pred HHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH----cCCCHHHHH
Q 021527 53 TFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA----RGTNFNAIL 128 (311)
Q Consensus 53 ~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~----~G~~~~~~~ 128 (311)
.|.++++++++ +..+++=|. -.++.++++|+|+|-.| |+ . +...+. ..+++++.+
T Consensus 6 ~lr~~~~~g~~--i~~~tayD~------~sArl~e~aG~d~i~vG--------ds-~----~~~~lG~~Dt~~vtl~em~ 64 (264)
T PRK00311 6 DLQKMKQEGEK--IVMLTAYDY------PFAKLFDEAGVDVILVG--------DS-L----GMVVLGYDSTLPVTLDDMI 64 (264)
T ss_pred HHHHHHhCCCC--EEEEeCCCH------HHHHHHHHcCCCEEEEC--------HH-H----HHHHcCCCCCCCcCHHHHH
Confidence 45666666554 334444444 56778899999999876 11 0 001111 126889999
Q ss_pred HHHHHhhccCCCc-EEEEe-cCcchhccCHH----HHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeE
Q 021527 129 SMLKEVVPQMSCP-IALFT-YYNPILKRGVD----NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 196 (311)
Q Consensus 129 ~~i~~ir~~~~iP-iilm~-Y~n~i~~~g~~----~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I 196 (311)
..++.|++..+.| |+... |-+ |..+.+ +-.+.++++|++||-+=|- ++..+..+.+.+.||.++
T Consensus 65 ~h~~~V~r~~~~p~vvaD~pfg~--y~~~~~~av~~a~r~~~~aGa~aVkiEdg--~~~~~~I~al~~agIpV~ 134 (264)
T PRK00311 65 YHTKAVARGAPRALVVADMPFGS--YQASPEQALRNAGRLMKEAGAHAVKLEGG--EEVAETIKRLVERGIPVM 134 (264)
T ss_pred HHHHHHHhcCCCCcEEEeCCCCC--ccCCHHHHHHHHHHHHHHhCCeEEEEcCc--HHHHHHHHHHHHCCCCEe
Confidence 9999998888886 55522 211 111222 2345556699999999875 455566777778898765
No 318
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=97.40 E-value=0.0028 Score=61.35 Aligned_cols=165 Identities=20% Similarity=0.242 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHH-----HHHHHHcCCCHHHH----HHHHHHhhccC--CCcEEEEe
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA-----ATRSLARGTNFNAI----LSMLKEVVPQM--SCPIALFT 146 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a-----~~~Al~~G~~~~~~----~~~i~~ir~~~--~iPiilm~ 146 (311)
.+.+.++.+.++|.|+|||- -+.|-.+++- +.|--+.|=++++- +++++.||+.+ +.||.+--
T Consensus 150 ~f~~AA~~A~~AGfDGVEIH------~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rl 223 (341)
T PF00724_consen 150 DFAQAARRAKEAGFDGVEIH------AAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRL 223 (341)
T ss_dssp HHHHHHHHHHHTT-SEEEEE------ESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred HHHHHHHHHHHhccCeEeec------ccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEE
Confidence 47788889999999999993 2345555443 34444555555543 55666677653 45555543
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
..+.....| +..+|..++...+.+.|++.+-+..-. ++.... ..
T Consensus 224 s~~~~~~~g--------------------~~~~e~~~~~~~~~~~~~d~~~~~~~~---------------~~~~~~-~~ 267 (341)
T PF00724_consen 224 SPDDFVEGG--------------------ITLEETIEIAKLLEELGVDFLDVSHGS---------------YVHWSE-PR 267 (341)
T ss_dssp ETTCSSTTS--------------------HHSHHHHHHHHHHHHHHHTTEEEEEES---------------EEEEEB-TS
T ss_pred eeecccCCC--------------------CchHHHHHHHHHHHHHhhhhccccccc---------------cccccc-cc
Confidence 221111111 122444445555555555543221100 111110 00
Q ss_pred ccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 227 VTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.+........-..++.+.+|+.+++||++.+||++++++.++++.| +|.|-+|-+++.
T Consensus 268 ~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la 326 (341)
T PF00724_consen 268 PSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLA 326 (341)
T ss_dssp STTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH
T ss_pred cccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCceEeeccHHHHh
Confidence 1111111111123567888888899999999999999898888766 999999988775
No 319
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=97.40 E-value=0.0022 Score=58.35 Aligned_cols=102 Identities=24% Similarity=0.279 Sum_probs=68.1
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
-...++.+.+.++++.+.+ .+|++|+|.|| + +..|.. .+.+.++.+++.. .||++..-..
T Consensus 6 ALD~~~~~~a~~i~~~~~~-~v~~iKvG~~l---------~-------~~~G~~--~l~~~i~~l~~~~-~~I~~D~K~~ 65 (226)
T PF00215_consen 6 ALDPTDLEEALRIADELGD-YVDIIKVGTPL---------F-------LAYGLE--ALPEIIEELKERG-KPIFLDLKLG 65 (226)
T ss_dssp EE-SSSHHHHHHHHHHHGG-GSSEEEEEHHH---------H-------HHHCHH--HHHHHHHHHHHTT-SEEEEEEEE-
T ss_pred EeCCCCHHHHHHHHHHhcC-cceEEEEChHH---------H-------hcCChh--hHHHHHHHHHHhc-CCEeeeeeec
Confidence 3445667899999999888 89999999666 1 122311 3456777887765 8888876443
Q ss_pred chhccCHHHHHH---HHHHcCCcEEEecCCCh-hhHHHHHHHHHHcC
Q 021527 150 PILKRGVDNFMS---TVRDIGIRGLVVPDVPL-EETESLQKEAMKNK 192 (311)
Q Consensus 150 ~i~~~g~~~fi~---~~~~aGadGviipDlp~-ee~~~~~~~~~~~g 192 (311)
++-.+ ..++++ .+.+.|+|.+.+.-+.- +-...+.+.++++|
T Consensus 66 Dig~t-~~~~~~~~~~~~~~gaD~vTv~~~~G~~tl~~~~~~a~~~~ 111 (226)
T PF00215_consen 66 DIGNT-VARYAEAGFAAFELGADAVTVHPFAGDDTLEAAVKAAKKHG 111 (226)
T ss_dssp SSHHH-HHHHHHSCHHHHTTTESEEEEEGTTHHHHHHHHHHHHHHTT
T ss_pred ccchH-HHHHHHHhhhhhcCCCcEEEEeccCCHHHHHHHHHHHhccC
Confidence 33221 134454 45789999999975543 34567888888887
No 320
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=97.39 E-value=0.0043 Score=60.79 Aligned_cols=164 Identities=16% Similarity=0.096 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHH-----HHHHHHcCCCH----HHHHHHHHHhhccCCCcEEEEecC
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAA-----ATRSLARGTNF----NAILSMLKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a-----~~~Al~~G~~~----~~~~~~i~~ir~~~~iPiilm~Y~ 148 (311)
.+.+.++.+.++|.|+|||- -+-|-.+++- ++|.-+.|-++ +=++++++.||+.+..++.+..
T Consensus 151 ~f~~AA~ra~~aGfDgVEih------~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~v-- 222 (370)
T cd02929 151 WYVDAALRARDAGFDIVYVY------AAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVAT-- 222 (370)
T ss_pred HHHHHHHHHHHcCCCEEEEc------ccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEE--
Confidence 57788899999999999993 1222222211 12222334333 3346788888887654433322
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCcc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~T 228 (311)
+.+.+++.. + .| ....+|..++.+.+.+. ++.+-+..- .... .+. ....
T Consensus 223 ----Rls~~~~~~-----~-~g----~~~~~e~~~~~~~l~~~-~D~i~vs~g-~~~~---------~~~---~~~~--- 271 (370)
T cd02929 223 ----RFSVDELIG-----P-GG----IESEGEGVEFVEMLDEL-PDLWDVNVG-DWAN---------DGE---DSRF--- 271 (370)
T ss_pred ----EecHHHhcC-----C-CC----CCCHHHHHHHHHHHHhh-CCEEEecCC-Cccc---------ccc---cccc---
Confidence 222222211 0 01 12346666666666553 454433221 1000 000 0000
Q ss_pred CCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 229 GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
...+. ..++.+++|+.+++||++.+||++++++.++++.| +|.|-+|=+++.
T Consensus 272 -~~~~~---~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 272 -YPEGH---QEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred -CCccc---cHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh
Confidence 00011 23567888998999999999999999999999977 999999977765
No 321
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=97.38 E-value=0.03 Score=52.68 Aligned_cols=179 Identities=15% Similarity=0.145 Sum_probs=107.6
Q ss_pred EEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe
Q 021527 67 PYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 67 ~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~ 146 (311)
||-- |.-|.+.+.+.++.+.+.|+|.|-++--.. ++ .-.+.++..++++.+.+..+ +++.-.
T Consensus 11 Pf~~-g~iD~~~~~~li~~l~~~Gv~Gl~~~GstG----E~------------~~Lt~eEr~~l~~~~~~~~~-~vi~gv 72 (279)
T cd00953 11 PFTG-NKIDKEKFKKHCENLISKGIDYVFVAGTTG----LG------------PSLSFQEKLELLKAYSDITD-KVIFQV 72 (279)
T ss_pred CcCC-CCcCHHHHHHHHHHHHHcCCcEEEEcccCC----Cc------------ccCCHHHHHHHHHHHHHHcC-CEEEEe
Confidence 4444 889999999999999999999998841110 11 11455666777777766543 443332
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEe--cCC-C---hhhHHHHHHHHHHcCCCeEEEeCCC-----ChHHHHHHHHHhC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVV--PDV-P---LEETESLQKEAMKNKIELVLFTTPT-----TPTDRMKAIVEAS 215 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGvii--pDl-p---~ee~~~~~~~~~~~gi~~I~lisp~-----t~~eri~~i~~~a 215 (311)
-.+.. ...-+..+.+.+.|+|++++ |-. + .++..++...+.+ ++.++++=.|. .+.+-++++++..
T Consensus 73 g~~~~--~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~-~lpv~iYn~P~~tg~~l~~~~l~~L~~~~ 149 (279)
T cd00953 73 GSLNL--EESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS-PYPTFIYNYPKATGYDINARMAKEIKKAG 149 (279)
T ss_pred CcCCH--HHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh-cCCEEEEeCccccCCCCCHHHHHHHHhcC
Confidence 21111 11234667789999999998 432 2 2455566666655 88777654442 2356777776544
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
..++.+=.. +| ++ +.+.++++.. +..|+.|. -+.+-..+..||+|+|.|++
T Consensus 150 p~vvgiK~s---~~-------d~-~~~~~~~~~~~~~~v~~G~----d~~~~~~l~~Ga~G~i~~~~ 201 (279)
T cd00953 150 GDIIGVKDT---NE-------DI-SHMLEYKRLVPDFKVYSGP----DSLIFSALRSGLDGSVAAAS 201 (279)
T ss_pred CCEEEEEeC---cc-------CH-HHHHHHHHhCCCeEEEEcc----HHHHHHHHHcCCCeEEechh
Confidence 555554211 11 12 2333343322 55566553 25666777899999999977
No 322
>PRK14565 triosephosphate isomerase; Provisional
Probab=97.38 E-value=0.003 Score=58.42 Aligned_cols=122 Identities=16% Similarity=0.232 Sum_probs=77.8
Q ss_pred HHHHHHHcCCcEEEecCC----ChhhHHHHH----HHHHHcCCCeEEEeCCCChHHHH--------HHHHHh-----CCc
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEETESLQ----KEAMKNKIELVLFTTPTTPTDRM--------KAIVEA-----SEG 217 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee~~~~~----~~~~~~gi~~I~lisp~t~~eri--------~~i~~~-----a~g 217 (311)
-.+.+++.|++.+++..- .+.|..+.. ..+.++|+.+|+-+.-+ .++|- ....+. ..-
T Consensus 77 S~~mLkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~-~e~r~~~~~~~~~~~Ql~~~l~~~~~i 155 (237)
T PRK14565 77 SAKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGET-LEDRENGMTKDVLLEQCSNCLPKHGEF 155 (237)
T ss_pred CHHHHHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCC-HHHHHccChHHHHHHHHHHHhcCCCCE
Confidence 456788899999998631 123444444 66788899888776643 33331 111110 112
Q ss_pred eEEEEe--cCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhc
Q 021527 218 FVYLVS--SIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~ 284 (311)
.+-|.+ ..| ||.. ..++...+..+.+|+.. +++|++|++|+ ++++..+... +.||+-||++-.+
T Consensus 156 vIAYEPvWAIG-tG~~-a~~e~i~~~~~~Ir~~~~~~~IlYGGSV~-~~N~~~l~~~~~iDG~LvG~asl~ 223 (237)
T PRK14565 156 IIAYEPVWAIG-GSTI-PSNDAIAEAFEIIRSYDSKSHIIYGGSVN-QENIRDLKSINQLSGVLVGSASLD 223 (237)
T ss_pred EEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHhCCCceEEEcCccC-HhhHHHHhcCCCCCEEEEechhhc
Confidence 232322 233 5542 34555677777788864 68999999997 7999998864 7999999999886
No 323
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.37 E-value=0.0045 Score=59.79 Aligned_cols=128 Identities=14% Similarity=0.152 Sum_probs=82.5
Q ss_pred cCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChH---HHHHHHHH
Q 021527 137 QMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT---DRMKAIVE 213 (311)
Q Consensus 137 ~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~---eri~~i~~ 213 (311)
.++.|+++-.- ..---+++.+.+.+.|.-+++.= +.+|+...+.+..+..++ +..++..+.+ +|+.++.+
T Consensus 35 ~l~~P~~inAM----~t~iN~~LA~~a~~~G~~~~~~k-~~~e~~~~~~r~~~~~~l--~v~~~vg~~~~~~~~~~~Lv~ 107 (326)
T PRK05458 35 TFKLPVVPANM----QTIIDEKIAEWLAENGYFYIMHR-FDPEARIPFIKDMHEQGL--IASISVGVKDDEYDFVDQLAA 107 (326)
T ss_pred EecCcEEEecc----cchhHHHHHHHHHHcCCEEEEec-CCHHHHHHHHHhcccccc--EEEEEecCCHHHHHHHHHHHh
Confidence 46788887433 21112456677888898887665 667877777755554455 3334444433 56666666
Q ss_pred hCC--ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 214 ASE--GFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 214 ~a~--gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
..- .++-+-+.. +-...+.++++++|+..+ +||++ +.|.|+|+++.+.++|+|++.||
T Consensus 108 ag~~~d~i~iD~a~-------gh~~~~~e~I~~ir~~~p~~~vi~-g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 108 EGLTPEYITIDIAH-------GHSDSVINMIQHIKKHLPETFVIA-GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred cCCCCCEEEEECCC-------CchHHHHHHHHHHHhhCCCCeEEE-EecCCHHHHHHHHHcCcCEEEEC
Confidence 422 333332222 223457789999999875 77755 45779999999999999999988
No 324
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=97.36 E-value=0.049 Score=50.46 Aligned_cols=208 Identities=15% Similarity=0.137 Sum_probs=116.0
Q ss_pred HHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH--cCCCHHHHHHHH
Q 021527 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA--RGTNFNAILSML 131 (311)
Q Consensus 54 f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~--~G~~~~~~~~~i 131 (311)
|.+.|++++ .+..+++=|+ -.++.++++|+|.|-+| |..+.. ..-+. ..+++++.+..+
T Consensus 4 ~~~~~~~~~--~i~~~~ayD~------~sA~i~e~aG~dai~v~---------~s~~a~--~~G~pD~~~vtl~em~~~~ 64 (240)
T cd06556 4 LQKYKQEKE--RFATLTAYDY------SMAKQFADAGLNVMLVG---------DSQGMT--VAGYDDTLPYPVNDVPYHV 64 (240)
T ss_pred HHHHHhCCC--eEEEecCCCH------HHHHHHHHcCCCEEEEC---------hHHHHH--hcCCCCCCCcCHHHHHHHH
Confidence 344443443 3334455555 56677888999999997 333321 11111 126889999999
Q ss_pred HHhhccCC-CcEEEE---ecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEe--CCCC--
Q 021527 132 KEVVPQMS-CPIALF---TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT--TPTT-- 203 (311)
Q Consensus 132 ~~ir~~~~-iPiilm---~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~li--sp~t-- 203 (311)
+.|++..+ +||+.. +|+++.. ...+.++++.++|++||.+=|-. |..+..+.+++.++-++--+ .|.+
T Consensus 65 ~~I~r~~~~~pviaD~~~G~g~~~~--~~~~~~~~l~~aGa~gv~iED~~--~~~~~i~ai~~a~i~ViaRtd~~pq~~~ 140 (240)
T cd06556 65 RAVRRGAPLALIVADLPFGAYGAPT--AAFELAKTFMRAGAAGVKIEGGE--WHIETLQMLTAAAVPVIAHTGLTPQSVN 140 (240)
T ss_pred HHHHhhCCCCCEEEeCCCCCCcCHH--HHHHHHHHHHHcCCcEEEEcCcH--HHHHHHHHHHHcCCeEEEEeCCchhhhh
Confidence 99998765 799987 4665321 23456778888999999998862 44445566677775322111 1210
Q ss_pred -----------h------HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHH
Q 021527 204 -----------P------TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQ 266 (311)
Q Consensus 204 -----------~------~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~ 266 (311)
. .+|.+.+.+..-..+++. ++ + .+.++++.+..++|++. .|-.+
T Consensus 141 ~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e---~~-------~---~e~~~~i~~~~~~P~~~-~gag~----- 201 (240)
T cd06556 141 TSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVME---CV-------P---VELAKQITEALAIPLAG-IGAGS----- 201 (240)
T ss_pred ccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEc---CC-------C---HHHHHHHHHhCCCCEEE-EecCc-----
Confidence 0 133344433222334432 11 1 36688888888999843 33332
Q ss_pred HHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHhh
Q 021527 267 QVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 267 ~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (311)
|.||-+.=+.=+--+.+.. .....+...++.+.++.+
T Consensus 202 -----~~dgq~lv~~d~lg~~~~~-~p~f~~~~~~~~~~~~~~ 238 (240)
T cd06556 202 -----GTDGQFLVLADAFGITGGH-IPKFAKNFHAETGDIRAA 238 (240)
T ss_pred -----CCCceEEeHHhhhcccCCC-CCchHHHHhhhHHHHHHH
Confidence 5787766544333332211 123344555555555544
No 325
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=97.35 E-value=0.16 Score=48.97 Aligned_cols=213 Identities=16% Similarity=0.201 Sum_probs=132.6
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCC-HHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN-FNA 126 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~-~~~ 126 (311)
..+.+.++..++++ -++-.|=+ .+++...-++++.++.++.+|--..|-.-.+ .|.+ +..
T Consensus 10 v~~k~lL~~A~~~~-yAV~AfN~---~n~e~~~avi~AAee~~sPvIlq~s~~~~~~---------------~g~~~~~~ 70 (321)
T PRK07084 10 VNTREMFAKAVKGG-YAIPAYNF---NNMEQLQAIIQACVETKSPVILQVSKGARKY---------------ANATLLRY 70 (321)
T ss_pred cCHHHHHHHHHHCC-ceEEEEEe---CCHHHHHHHHHHHHHhCCCEEEEechhHHhh---------------CCchHHHH
Confidence 45778888766554 45555543 4678888899999999888875542211111 1211 233
Q ss_pred HHHHHHHhhccC--CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE--
Q 021527 127 ILSMLKEVVPQM--SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV-- 196 (311)
Q Consensus 127 ~~~~i~~ir~~~--~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I-- 196 (311)
+...+++..++. ++||.+.. + +..-.+++..+.++|.+.|.+ ..+|+|| ..++.+.++.+|+.+=
T Consensus 71 ~~~~~~~~a~~a~~~VPV~lHL--D---Hg~~~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaE 145 (321)
T PRK07084 71 MAQGAVEYAKELGCPIPIVLHL--D---HGDSFELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGE 145 (321)
T ss_pred HHHHHHHHHHHcCCCCcEEEEC--C---CCCCHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 445556666554 79998853 1 222346889999999999988 5789887 6678888888886321
Q ss_pred --EEe--------CC--CChHHHHHHHHHhCCceEEE-E---ecCCccCCCCC--CCchHHHHHHHHhhcC-CCcEEE--
Q 021527 197 --LFT--------TP--TTPTDRMKAIVEASEGFVYL-V---SSIGVTGARAS--ISGHVQTLLREIKESS-TKPVAV-- 255 (311)
Q Consensus 197 --~li--------sp--~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~--~~~~~~~~l~~vk~~~-~~Pv~v-- 255 (311)
.+- .. -|+++..++..+. .|...+ + +..|..-...+ -+.=-.+.++++++.+ ++|++.
T Consensus 146 lG~igg~ed~~~~~~~~~T~peeA~~Fv~~-TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHG 224 (321)
T PRK07084 146 LGVLAGVEDEVSAEHHTYTQPEEVEDFVKK-TGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHG 224 (321)
T ss_pred EeeecCccCCccCcccccCCHHHHHHHHHH-hCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeC
Confidence 010 01 2334555566553 344444 2 34443321000 1111236788998888 799866
Q ss_pred ee---------------------CCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 256 GF---------------------GISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 256 Gf---------------------GIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
|. |+. .|++++..+.|.-=|=|+|.+....
T Consensus 225 gSg~~~~~~~~~~~~g~~~~~~~Gi~-~e~~~kai~~GI~KINi~Tdl~~a~ 275 (321)
T PRK07084 225 SSSVPQEYVKTINEYGGKLKDAIGIP-EEQLRKAAKSAVCKINIDSDGRLAM 275 (321)
T ss_pred CCCCcHHHHHHHHHhcCccccCCCCC-HHHHHHHHHcCCceeccchHHHHHH
Confidence 55 554 6999999999999999999886544
No 326
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.34 E-value=0.00099 Score=68.35 Aligned_cols=79 Identities=25% Similarity=0.243 Sum_probs=56.9
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCC--CCchHHHHHHHHhhcCCCcEEEeeCCCCH-----------HHHHHHHH
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARAS--ISGHVQTLLREIKESSTKPVAVGFGISKP-----------EHVQQVAG 270 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~--~~~~~~~~l~~vk~~~~~Pv~vGfGIst~-----------e~v~~v~~ 270 (311)
|.+..+.+.+..-..+-++.. |+++.+ ......+.|+++.+.+.+|+.||+||++. |+++++++
T Consensus 269 Pve~a~~y~~~Gadel~~~Di---~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~ 345 (538)
T PLN02617 269 PVELAGQYYKDGADEVAFLNI---TGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFR 345 (538)
T ss_pred HHHHHHHHHHcCCCEEEEEEC---CCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHH
Confidence 445556665533333444443 444332 22335678999989889999999999997 66999999
Q ss_pred cCCcEEEEhhHhhch
Q 021527 271 WGADGVIVGSAMVKL 285 (311)
Q Consensus 271 ~GADGvIVGSaiv~~ 285 (311)
.|||=|+|||+.++.
T Consensus 346 ~GadkV~i~s~Av~~ 360 (538)
T PLN02617 346 SGADKISIGSDAVYA 360 (538)
T ss_pred cCCCEEEEChHHHhC
Confidence 999999999988874
No 327
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.32 E-value=0.001 Score=60.91 Aligned_cols=75 Identities=27% Similarity=0.375 Sum_probs=55.0
Q ss_pred HHHHHHHHHh-CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 205 TDRMKAIVEA-SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 205 ~eri~~i~~~-a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
.+-.+.+.+. ++..+++- +|-+..+ .....+.++++.+...+|+.||+||++.|++++++.+|||=|=|.|+-+
T Consensus 33 VelA~~Y~e~GADElvFlD----ItAs~~g-r~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv 107 (256)
T COG0107 33 VELAKRYNEEGADELVFLD----ITASSEG-RETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAV 107 (256)
T ss_pred HHHHHHHHHcCCCeEEEEe----ccccccc-chhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHh
Confidence 3444444443 44555552 2333222 2235688999999999999999999999999999999999999999877
Q ss_pred c
Q 021527 284 K 284 (311)
Q Consensus 284 ~ 284 (311)
+
T Consensus 108 ~ 108 (256)
T COG0107 108 K 108 (256)
T ss_pred c
Confidence 6
No 328
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=97.31 E-value=0.051 Score=51.39 Aligned_cols=204 Identities=14% Similarity=0.236 Sum_probs=131.1
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE-ecCcchhcc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF-TYYNPILKR 154 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm-~Y~n~i~~~ 154 (311)
.+.+.+.++.|.+.+.|.+-+- | | ..|.+.+..+.+.+.|+++..+|.+.- +..+ ..+.
T Consensus 15 ~~~~~~~~~~l~~~~p~fvsvT--~------~-----------~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~-~~~~ 74 (281)
T TIGR00677 15 VQNLYERMDRMVASGPLFIDIT--W------G-----------AGGTTAELTLTIASRAQNVVGVETCMHLTCTN-MPIE 74 (281)
T ss_pred HHHHHHHHHHHhhCCCCEEEec--c------C-----------CCCcchhhHHHHHHHHHHhcCCCeeEEeccCC-CCHH
Confidence 4678888899999999999884 2 1 013344556778889988878876553 2222 2233
Q ss_pred CHHHHHHHHHHcCCcEEEe--cCCC------------hhhHHHHHHHHHHc-C--CCeEEEeCCCC----h--HHHHHHH
Q 021527 155 GVDNFMSTVRDIGIRGLVV--PDVP------------LEETESLQKEAMKN-K--IELVLFTTPTT----P--TDRMKAI 211 (311)
Q Consensus 155 g~~~fi~~~~~aGadGvii--pDlp------------~ee~~~~~~~~~~~-g--i~~I~lisp~t----~--~eri~~i 211 (311)
.++.++..+.+.|++.+++ .|-| ++.+.++.+.+++. + +..-.-..|.- + +..+..+
T Consensus 75 ~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L 154 (281)
T TIGR00677 75 MIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYL 154 (281)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHH
Confidence 5678888899999998877 3553 12366677777663 3 22222234421 1 1212222
Q ss_pred H-HhCCceEEEEecCCccCCCCCCC-chHHHHHHHHhhc-CCCcEEEeeC-CCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 212 V-EASEGFVYLVSSIGVTGARASIS-GHVQTLLREIKES-STKPVAVGFG-ISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 212 ~-~~a~gfiY~vs~~G~TG~~~~~~-~~~~~~l~~vk~~-~~~Pv~vGfG-Ist~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
. +...|..|++|-. -.+ ..+.++++++++. .++||+.|.- +.|..++..+.++ -|+-|-..+.+.++
T Consensus 155 ~~Ki~aGA~f~iTQ~-------~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~s~~~~~~~~~~--~Gi~vP~~l~~~l~ 225 (281)
T TIGR00677 155 KEKVDAGADFIITQL-------FYDVDNFLKFVNDCRAIGIDCPIVPGIMPINNYASFLRRAKW--SKTKIPQEIMSRLE 225 (281)
T ss_pred HHHHHcCCCEeeccc-------eecHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHhc--CCCCCCHHHHHHHH
Confidence 2 2346766776532 233 3467899999886 5899999964 5777778777554 69999999999997
Q ss_pred hcCCc-h----hHHHHHHHHHHHHHh
Q 021527 288 EAQSP-E----EGLKELEKFAKSLKS 308 (311)
Q Consensus 288 ~~~~~-~----~~~~~~~~~~~~l~~ 308 (311)
+..+. + .+++-..++++++++
T Consensus 226 ~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 226 PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 54332 2 467777778888765
No 329
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.29 E-value=0.01 Score=58.04 Aligned_cols=159 Identities=19% Similarity=0.172 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHH-----HHHHHcCCCHH----HHHHHHHHhhccC--CCcEEEEe
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAA-----TRSLARGTNFN----AILSMLKEVVPQM--SCPIALFT 146 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~-----~~Al~~G~~~~----~~~~~i~~ir~~~--~iPiilm~ 146 (311)
.+.+.++.+.++|.|+|||- -+.|-.+.+-. .|--+.|-+++ =++++++.||+.+ +.||.+-.
T Consensus 145 ~f~~AA~~a~~aGfDgVeih------~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRi 218 (361)
T cd04747 145 AFARAAADARRLGFDGIELH------GAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRF 218 (361)
T ss_pred HHHHHHHHHHHcCCCEEEEe------cccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 57888899999999999993 12232222211 11122333332 3467888888875 46777632
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCC
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
|+... .++ +.. ..+.++|..++.+.+.+.|++.+-+..... ....
T Consensus 219 --s~~~~---~~~-------~~~----~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~-----------------~~~~-- 263 (361)
T cd04747 219 --SQWKQ---QDY-------TAR----LADTPDELEALLAPLVDAGVDIFHCSTRRF-----------------WEPE-- 263 (361)
T ss_pred --Ccccc---ccc-------ccC----CCCCHHHHHHHHHHHHHcCCCEEEecCCCc-----------------cCCC--
Confidence 21100 000 000 013356777777778888888754432210 0000
Q ss_pred ccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCC------------------CCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 227 VTGARASISGHVQTLLREIKESSTKPVAVGFGI------------------SKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGI------------------st~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
..|. + ..+.+.+|+.+++||++-+|| ++++++.++++.| +|.|-+|-+++.
T Consensus 264 ~~~~----~---~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia 333 (361)
T cd04747 264 FEGS----E---LNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred cCcc----c---hhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh
Confidence 0111 1 245677888889999999998 5899999999876 999999988765
No 330
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=97.28 E-value=0.033 Score=53.05 Aligned_cols=180 Identities=17% Similarity=0.207 Sum_probs=106.8
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH-cC-CCHHHHHHHHHHhhccCCCcEEEE---ecCcchhccC
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA-RG-TNFNAILSMLKEVVPQMSCPIALF---TYYNPILKRG 155 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~-~G-~~~~~~~~~i~~ir~~~~iPiilm---~Y~n~i~~~g 155 (311)
=-++.++++|.+.|-.+ |--+..+ ..+. .| .++++.++.+++|...+++||++. ||-|+. .
T Consensus 26 lSAri~e~aGf~ai~~s---------s~~va~s--lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~---~ 91 (290)
T TIGR02321 26 LVAKLAEQAGFGGIWGS---------GFELSAS--YAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAV---N 91 (290)
T ss_pred HHHHHHHHcCCCEEEEC---------HHHHHHH--CCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcH---H
Confidence 34566788899999885 3222211 1111 11 588899999999999999999998 587765 2
Q ss_pred HHHHHHHHHHcCCcEEEecCC-----------------ChhhHHHHHHHHH--HcCCCeEEEe------CCCCh---HHH
Q 021527 156 VDNFMSTVRDIGIRGLVVPDV-----------------PLEETESLQKEAM--KNKIELVLFT------TPTTP---TDR 207 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviipDl-----------------p~ee~~~~~~~~~--~~gi~~I~li------sp~t~---~er 207 (311)
+.+.++.+.++|+.|+.+=|- +.||..+-.+.++ +.+.+.++.. ..... .+|
T Consensus 92 v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~R 171 (290)
T TIGR02321 92 VHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRR 171 (290)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHH
Confidence 577899999999999999662 2334222222222 2344444322 11111 256
Q ss_pred HHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC--CcEEEeeCCCCHH-HHHHHHHcC-CcEEEEhhHhh
Q 021527 208 MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST--KPVAVGFGISKPE-HVQQVAGWG-ADGVIVGSAMV 283 (311)
Q Consensus 208 i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~--~Pv~vGfGIst~e-~v~~v~~~G-ADGvIVGSaiv 283 (311)
.+.+.+..-..+|+.+. . + + .+.++++.+..+ +|+++--|- +|. .+.++.++| ..-|+.|+.+.
T Consensus 172 a~aY~eAGAD~ifv~~~--~---~---~---~~ei~~~~~~~~~p~pv~~~~~~-~p~~~~~~l~~lg~~~~v~~g~~~~ 239 (290)
T TIGR02321 172 GQAYEEAGADAILIHSR--Q---K---T---PDEILAFVKSWPGKVPLVLVPTA-YPQLTEADIAALSKVGIVIYGNHAI 239 (290)
T ss_pred HHHHHHcCCCEEEecCC--C---C---C---HHHHHHHHHhcCCCCCeEEecCC-CCCCCHHHHHHhcCCcEEEEChHHH
Confidence 66676655556665321 0 0 1 245666666554 577542231 222 244566676 67799998877
Q ss_pred chh
Q 021527 284 KLL 286 (311)
Q Consensus 284 ~~~ 286 (311)
+..
T Consensus 240 ~aa 242 (290)
T TIGR02321 240 RAA 242 (290)
T ss_pred HHH
Confidence 743
No 331
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=97.26 E-value=0.051 Score=51.01 Aligned_cols=119 Identities=19% Similarity=0.221 Sum_probs=76.8
Q ss_pred HHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc----CCCHHHHH
Q 021527 53 TFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAR----GTNFNAIL 128 (311)
Q Consensus 53 ~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~----G~~~~~~~ 128 (311)
.|.+++++|++. ..+++=| .-.++.++++|+|+|-+| |.+ | ...+.. .+++++.+
T Consensus 6 ~~~~~~~~g~~i--~m~tayD------~~sA~i~~~aG~d~ilvG----dSl--g-------m~~lG~~~t~~vtldem~ 64 (263)
T TIGR00222 6 SLLQKKKQEEKI--VAITAYD------YSFAKLFADAGVDVILVG----DSL--G-------MVVLGHDSTLPVTVADMI 64 (263)
T ss_pred HHHHHHhCCCcE--EEEeccC------HHHHHHHHHcCCCEEEEC----ccH--h-------HHhcCCCCCCCcCHHHHH
Confidence 355666666653 3444333 246778899999999998 211 1 112222 37899999
Q ss_pred HHHHHhhccCCCcEEE-----EecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeE
Q 021527 129 SMLKEVVPQMSCPIAL-----FTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 196 (311)
Q Consensus 129 ~~i~~ir~~~~iPiil-----m~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I 196 (311)
..++.+++-.+-|+++ ++|-+ ...++++-.+.++++|+++|-+=|- ++..+..+.+.+.|+.++
T Consensus 65 ~h~~aV~rg~~~~~vv~DmPf~sy~~--~e~a~~na~rl~~eaGa~aVkiEgg--~~~~~~i~~l~~~gIpV~ 133 (263)
T TIGR00222 65 YHTAAVKRGAPNCLIVTDLPFMSYAT--PEQALKNAARVMQETGANAVKLEGG--EWLVETVQMLTERGVPVV 133 (263)
T ss_pred HHHHHHHhhCCCceEEeCCCcCCCCC--HHHHHHHHHHHHHHhCCeEEEEcCc--HhHHHHHHHHHHCCCCEE
Confidence 9999998876666555 24432 1122333444566799999988775 455566788889999877
No 332
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=97.26 E-value=0.066 Score=55.92 Aligned_cols=226 Identities=15% Similarity=0.203 Sum_probs=136.9
Q ss_pred HHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 021527 54 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKE 133 (311)
Q Consensus 54 f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ 133 (311)
|.+..+.|+....=+..|-..+.+.+.+.++.|.+.++|.+-+- |||- |.+-..-+.+...
T Consensus 315 ~~~~l~~g~~vs~E~~PPk~~~~~~l~~~~~~L~~~~~d~i~Vt--------d~~~-----------g~~r~~s~~~a~~ 375 (612)
T PRK08645 315 LLDKLKKGKTVIVELDPPKGLDTDKFLEGAKALKEAGVDAITLA--------DNPL-----------ARVRISNIALASL 375 (612)
T ss_pred HHHHHhCCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEcC--------CCCC-----------cccccCHHHHHHH
Confidence 33333455552333667777778999999999999999999983 2211 1111123457777
Q ss_pred hhccCCCcEEEE-ecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChh------------hHHHHHHHHHHc--CC---
Q 021527 134 VVPQMSCPIALF-TYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLE------------ETESLQKEAMKN--KI--- 193 (311)
Q Consensus 134 ir~~~~iPiilm-~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~e------------e~~~~~~~~~~~--gi--- 193 (311)
++++..+|.+.- +.. ...+..++..+..+...|++.|++ .|-|.. .+.++.+.+++. |.
T Consensus 376 l~~~~gi~~i~Hltc~-d~n~~~l~~~L~~~~~~Gv~nILaLrGD~p~~g~~~~~~~vfd~~a~dLv~~ir~~~~g~~~~ 454 (612)
T PRK08645 376 IKRELGIEPLVHITCR-DRNLIGLQSHLLGLHALGIRNVLAITGDPAKVGDFPGATSVYDLNSFGLIKLIKQLNEGISYS 454 (612)
T ss_pred HHHHhCCCeeeEecCC-CcCHHHHHHHHHHHHHcCCceEEEccCCCCCCCCCCCCCCCccccHHHHHHHHHHHhCCCCcC
Confidence 777767776543 211 111223466777788999999877 465421 145667766663 21
Q ss_pred ----------CeEEEeCCCCh--HHHHHHHH-HhCCceEEEEecCCccCCCCCCC-chHHHHHHHHhhcCCCcEEEeeC-
Q 021527 194 ----------ELVLFTTPTTP--TDRMKAIV-EASEGFVYLVSSIGVTGARASIS-GHVQTLLREIKESSTKPVAVGFG- 258 (311)
Q Consensus 194 ----------~~I~lisp~t~--~eri~~i~-~~a~gfiY~vs~~G~TG~~~~~~-~~~~~~l~~vk~~~~~Pv~vGfG- 258 (311)
..-.-..|... +..++.+. +...|..|+++-. -.+ ..+.+++++++. .++||+.|.-
T Consensus 455 g~~~~~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~-------~fd~~~~~~~~~~~~~-~~vpIi~GImP 526 (612)
T PRK08645 455 GKPLGKKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQP-------VYDEELIEELLEATKH-LGVPIFIGIMP 526 (612)
T ss_pred CCccCCCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecc-------cCCHHHHHHHHHHHhc-CCCCEEEEeee
Confidence 11112234432 22222222 2345666665422 123 346677777774 5799999999
Q ss_pred CCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCc----hhHHHHHHHHHHHHHh
Q 021527 259 ISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSP----EEGLKELEKFAKSLKS 308 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~----~~~~~~~~~~~~~l~~ 308 (311)
+.|..+++.+.+. .-|+-|=..+.+.++...++ +.+++...+++++++.
T Consensus 527 i~s~k~~~~~~~~-~~Gv~vP~~l~~~l~~~~d~~~~~~~gv~~a~e~i~~l~~ 579 (612)
T PRK08645 527 LVSYRNAEFLHNE-VPGITLPEEIRERMRAVEDKEEAREEGVAIARELIDAARE 579 (612)
T ss_pred cCCHHHHHHHHhC-CCCCCCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHh
Confidence 8999999888764 56999999999999754322 2456667777777764
No 333
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=97.26 E-value=0.0023 Score=56.54 Aligned_cols=103 Identities=21% Similarity=0.338 Sum_probs=67.3
Q ss_pred HHHHHHHcC-CcEEEecCCChhhHHHHHHHHHHcCCCeEE--EeCCCChHHH-HHHHHHhCCceEEEEecCCccCCCCCC
Q 021527 159 FMSTVRDIG-IRGLVVPDVPLEETESLQKEAMKNKIELVL--FTTPTTPTDR-MKAIVEASEGFVYLVSSIGVTGARASI 234 (311)
Q Consensus 159 fi~~~~~aG-adGviipDlp~ee~~~~~~~~~~~gi~~I~--lisp~t~~er-i~~i~~~a~gfiY~vs~~G~TG~~~~~ 234 (311)
-++.+++.+ +||+|-.- ..+.+.+++.|+..|+ |+-.+..-++ ++.+.+....++=+.+ |
T Consensus 63 ~i~~L~~~~~~dGIISTk------~~~i~~Ak~~gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEilP--g-------- 126 (175)
T PF04309_consen 63 GIEYLKEYGKPDGIISTK------SNLIKRAKKLGLLTIQRIFLIDSSALETGIKQIEQSKPDAVEILP--G-------- 126 (175)
T ss_dssp HHHHHHHTT--SEEEESS------HHHHHHHHHTT-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEES--C--------
T ss_pred HHHHHHHcCCCcEEEeCC------HHHHHHHHHcCCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEch--H--------
Confidence 455566666 99986652 2467788999997663 3343444454 5555555667765543 1
Q ss_pred CchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 235 SGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 235 ~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
-+.+.++++++.++.|+++|+=|++.|++.+++++||+||-..
T Consensus 127 --~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS 169 (175)
T PF04309_consen 127 --VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTS 169 (175)
T ss_dssp --CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE-
T ss_pred --HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcC
Confidence 1336788899999999999999999999999999999999543
No 334
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=97.26 E-value=0.042 Score=52.11 Aligned_cols=179 Identities=15% Similarity=0.110 Sum_probs=107.3
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEec
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTY 147 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y 147 (311)
--|..|.+.+.+.++.+.+.|+|.|-++--.. ++ .-.+.++-.++++.+.+. -++||+.-+-
T Consensus 14 ~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstG----E~------------~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~ 77 (294)
T TIGR02313 14 RNGDIDEEALRELIEFQIEGGSHAISVGGTSG----EP------------GSLTLEERKQAIENAIDQIAGRIPFAPGTG 77 (294)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccCc----cc------------ccCCHHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 34677889999999999999999998851111 11 124566666777766543 3589887654
Q ss_pred CcchhccCHHHHHHHHHHcCCcEEEecC---CC--hhhHHH-HHHHHHHc-CCCeEEEeCCC-----ChHHHHHHHHHhC
Q 021527 148 YNPILKRGVDNFMSTVRDIGIRGLVVPD---VP--LEETES-LQKEAMKN-KIELVLFTTPT-----TPTDRMKAIVEAS 215 (311)
Q Consensus 148 ~n~i~~~g~~~fi~~~~~aGadGviipD---lp--~ee~~~-~~~~~~~~-gi~~I~lisp~-----t~~eri~~i~~~a 215 (311)
.|... ..-+..+.+.+.|+|++++.- .+ .++..+ |...+... ++.++++=.|. .+.+.+.++++.-
T Consensus 78 ~~~t~--~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~ 155 (294)
T TIGR02313 78 ALNHD--ETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDC 155 (294)
T ss_pred cchHH--HHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhC
Confidence 44221 113456678899999998831 11 244444 45556666 78766653332 2357777776544
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
..++++=.. +| ++ ..+.++.... +..|+.|.. +..-..+..|+||.|.|.+
T Consensus 156 pnv~giK~s---s~-------d~-~~~~~~~~~~~~~~~v~~G~d----~~~~~~l~~Ga~G~is~~~ 208 (294)
T TIGR02313 156 PNIVGAKES---NK-------DF-EHLNHLFLEAGRDFLLFCGIE----LLCLPMLAIGAAGSIAATA 208 (294)
T ss_pred CCEEEEEeC---CC-------CH-HHHHHHHHhcCCCeEEEEcch----HHHHHHHHCCCCEEEecHH
Confidence 566655221 11 11 2344443332 344544432 4555666799999999863
No 335
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.25 E-value=0.0032 Score=56.72 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
+.+..+.+.+..-..+.+++..+..+. ..+.++.+|+.+++||+++.+|.++++++.+.+.|||||++|+...
T Consensus 33 ~~~~A~~~~~~GA~~l~v~~~~~~~~g-------~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~ 105 (217)
T cd00331 33 PVEIAKAYEKAGAAAISVLTEPKYFQG-------SLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL 105 (217)
T ss_pred HHHHHHHHHHcCCCEEEEEeCccccCC-------CHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccC
Confidence 445555554433344555655544332 1256888888889999999999999999999999999999998765
Q ss_pred c
Q 021527 284 K 284 (311)
Q Consensus 284 ~ 284 (311)
.
T Consensus 106 ~ 106 (217)
T cd00331 106 D 106 (217)
T ss_pred C
Confidence 4
No 336
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=97.25 E-value=0.0021 Score=59.90 Aligned_cols=122 Identities=22% Similarity=0.334 Sum_probs=72.3
Q ss_pred HHHHHHHcCCcEEEecC----CChhhHHHHHHH----HHHcCCCeEEEeCCCChHHHH------------HHHHH-----
Q 021527 159 FMSTVRDIGIRGLVVPD----VPLEETESLQKE----AMKNKIELVLFTTPTTPTDRM------------KAIVE----- 213 (311)
Q Consensus 159 fi~~~~~aGadGviipD----lp~ee~~~~~~~----~~~~gi~~I~lisp~t~~eri------------~~i~~----- 213 (311)
-.+.++++|++.+++.. ..+.|..+.... +.++|+.+|+-+.- +.++|- +....
T Consensus 78 S~~mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvCiGE-t~~~r~~g~~~~v~~~Ql~~~l~~~~~~ 156 (250)
T PRK00042 78 SAEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGE-TLEEREAGKTEEVVARQLEAALAGLSAE 156 (250)
T ss_pred CHHHHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHHcCChHHHHHHHHHHHHccCCHH
Confidence 55678999999999963 223355555555 88899988876653 333332 11111
Q ss_pred -hCCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc---------CCCcEEEeeCCCCHHHHHHH-HHcCCcEEEEhh
Q 021527 214 -ASEGFVYLVS--SIGVTGARASISGHVQTLLREIKES---------STKPVAVGFGISKPEHVQQV-AGWGADGVIVGS 280 (311)
Q Consensus 214 -~a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~---------~~~Pv~vGfGIst~e~v~~v-~~~GADGvIVGS 280 (311)
...-.|-|.+ ..| ||... .+....+..+.+|+. .+++|++|++|+ ++++.++ ...+.||+-||+
T Consensus 157 ~~~~~vIAYEPvWAIG-tG~~a-s~~~~~~v~~~Ir~~l~~~~~~~~~~~~IlYGGSV~-~~N~~~l~~~~~vDG~LVG~ 233 (250)
T PRK00042 157 QFANLVIAYEPVWAIG-TGKTA-TPEQAQEVHAFIRAVLAELYGEVAEKVRILYGGSVK-PDNAAELMAQPDIDGALVGG 233 (250)
T ss_pred HhCCEEEEECCHHHhC-CCCCC-CHHHHHHHHHHHHHHHHHhcccccCCceEEEcCCCC-HHHHHHHhcCCCCCEEEEee
Confidence 1122333322 233 55432 233344444444432 147999999998 4666554 567799999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
+-.+
T Consensus 234 Asl~ 237 (250)
T PRK00042 234 ASLK 237 (250)
T ss_pred eeec
Confidence 9885
No 337
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=97.24 E-value=0.035 Score=52.63 Aligned_cols=179 Identities=10% Similarity=0.065 Sum_probs=104.6
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.+.|+|.|-++--.. +++ -.+.++-.++++.+.+. -++||+.-+-.+
T Consensus 21 g~iD~~~l~~li~~l~~~Gv~gi~v~GstG----E~~------------~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~ 84 (296)
T TIGR03249 21 GSFDEAAYRENIEWLLGYGLEALFAAGGTG----EFF------------SLTPAEYEQVVEIAVSTAKGKVPVYTGVGGN 84 (296)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEECCCCc----Ccc------------cCCHHHHHHHHHHHHHHhCCCCcEEEecCcc
Confidence 556678999999999999999999851111 111 13555556666665543 358888765322
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--CC---ChhhHHH-HHHHHHHcCCCeEEEeCC--CChHHHHHHHHHhCCceEEE
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--DV---PLEETES-LQKEAMKNKIELVLFTTP--TTPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--Dl---p~ee~~~-~~~~~~~~gi~~I~lisp--~t~~eri~~i~~~a~gfiY~ 221 (311)
. ...-+..+.+.++|+|++++. -. ..++..+ |...+...++.++++=.+ ..+.+-+.++++.-..++.+
T Consensus 85 -t--~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~nvvgi 161 (296)
T TIGR03249 85 -T--SDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGF 161 (296)
T ss_pred -H--HHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEE
Confidence 1 122356677899999998872 11 1244455 455556667776655322 23456666665534455543
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
=.. +| ++ +.+.++++.. +..|+.|++... +.+-..+.+|++|+|.|.+
T Consensus 162 Kds---~~-------d~-~~~~~~~~~~~~~~~v~~G~~~~d-~~~~~~~~~Ga~G~is~~~ 211 (296)
T TIGR03249 162 KDG---IG-------DM-EQMIEITQRLGDRLGYLGGMPTAE-VTAPAYLPLGVTSYSSAIF 211 (296)
T ss_pred EeC---CC-------CH-HHHHHHHHHcCCCeEEEeCCCcch-hhHHHHHhCCCCEEEecHH
Confidence 111 11 12 2334443332 466777776542 4455566789999998766
No 338
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.021 Score=55.47 Aligned_cols=157 Identities=22% Similarity=0.293 Sum_probs=102.5
Q ss_pred CCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCC------CHHHHHHHHH
Q 021527 61 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGT------NFNAILSMLK 132 (311)
Q Consensus 61 ~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~------~~~~~~~~i~ 132 (311)
+...||.=+-.-|| +.+.+.++..+..+ |.|-| |=|- . .|-+.|+ +.+-+=++|+
T Consensus 72 ~D~PLIvQf~~ndp--~~ll~Aa~lv~~y~-D~idlNcGCPq-----------~---~a~~g~yGa~L~~~~eLv~e~V~ 134 (358)
T KOG2335|consen 72 EDRPLIVQFGGNDP--ENLLKAARLVQPYC-DGIDLNCGCPQ-----------K---VAKRGGYGAFLMDNPELVGEMVS 134 (358)
T ss_pred CCCceEEEEcCCCH--HHHHHHHHHhhhhc-CcccccCCCCH-----------H---HHhcCCccceeccCHHHHHHHHH
Confidence 34567777766666 78888888888876 88877 4332 1 1222332 5666678899
Q ss_pred HhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHH
Q 021527 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIV 212 (311)
Q Consensus 133 ~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~ 212 (311)
.++.++++||-+-.- |.+|+ ++..+|...+.+.|...+. +.-.|.+++
T Consensus 135 ~v~~~l~~pVs~KIR------------------------I~~d~--~kTvd~ak~~e~aG~~~lt-VHGRtr~~k----- 182 (358)
T KOG2335|consen 135 AVRANLNVPVSVKIR------------------------IFVDL--EKTVDYAKMLEDAGVSLLT-VHGRTREQK----- 182 (358)
T ss_pred HHHhhcCCCeEEEEE------------------------ecCcH--HHHHHHHHHHHhCCCcEEE-EecccHHhc-----
Confidence 999999999655321 33443 4455555556666655333 232332222
Q ss_pred HhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCCHHHHHHHHH-cCCcEEEEhhHhhc
Q 021527 213 EASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAVGFGISKPEHVQQVAG-WGADGVIVGSAMVK 284 (311)
Q Consensus 213 ~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst~e~v~~v~~-~GADGvIVGSaiv~ 284 (311)
| .+ .++-..+.++.||+... +||++.++|.+.+++..+++ .|||||-+|=++..
T Consensus 183 -------------g---~~--~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~ 238 (358)
T KOG2335|consen 183 -------------G---LK--TGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLY 238 (358)
T ss_pred -------------C---CC--CCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhc
Confidence 1 11 11122467999999875 99999999999999999998 99999999965544
No 339
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.23 E-value=0.0044 Score=56.70 Aligned_cols=124 Identities=19% Similarity=0.212 Sum_probs=78.9
Q ss_pred HHHHHHHHcCCcEEEec-CC----C------hhhHHHHHHHHHHcCCCeEEEeCCCChH-------HHHHHHHHh--CCc
Q 021527 158 NFMSTVRDIGIRGLVVP-DV----P------LEETESLQKEAMKNKIELVLFTTPTTPT-------DRMKAIVEA--SEG 217 (311)
Q Consensus 158 ~fi~~~~~aGadGviip-Dl----p------~ee~~~~~~~~~~~gi~~I~lisp~t~~-------eri~~i~~~--a~g 217 (311)
.-++.+.+.|+|+|-+. ++ + .++..++.+.|+++|+++|+-..++..+ +.+...++. ..|
T Consensus 80 ~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~G 159 (236)
T PF01791_consen 80 AEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELG 159 (236)
T ss_dssp HHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhC
Confidence 45678999999987662 11 1 1456778899999999887764443322 123333332 356
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCc----EEEeeCC------CCHHHHHHHHHcCC--cEEEEhhHhhc
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESSTKP----VAVGFGI------SKPEHVQQVAGWGA--DGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~P----v~vGfGI------st~e~v~~v~~~GA--DGvIVGSaiv~ 284 (311)
..|+=+.+| +. .+......+.++++-+.++.| |.+.+|| ++.+++.++++.|| -|+..|=.+.+
T Consensus 160 aD~vKt~tg--~~-~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 160 ADFVKTSTG--KP-VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp -SEEEEE-S--SS-SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHHT
T ss_pred CCEEEecCC--cc-ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Confidence 666644333 12 222223334566655556789 9999999 99999999999999 89988876654
No 340
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.21 E-value=0.012 Score=58.44 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
+|++.+.+..-.+|.+-+..| .+..+.++++++|+.. ++++ +..+|.|+++++.+.++|||+|.||
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g-------~~~~~~~~v~~ik~~~p~~~v-i~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHG-------HSTRIIELVKKIKTKYPNLDL-IAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCC-------CChhHHHHHHHHHhhCCCCcE-EEEecCCHHHHHHHHHcCCCEEEEC
Confidence 677777665445554433222 2345678899999976 6776 5567778999999999999999998
No 341
>PRK08227 autoinducer 2 aldolase; Validated
Probab=97.21 E-value=0.084 Score=49.62 Aligned_cols=164 Identities=15% Similarity=0.181 Sum_probs=95.7
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-cCCCcEEEEecC-----c
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-QMSCPIALFTYY-----N 149 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~-~~~iPiilm~Y~-----n 149 (311)
++...+.+..+.+ |+|.+-+- -| +++.... ..++|+++-... +
T Consensus 41 l~~~~~~~~~i~~-~~da~~~~--------~G----------------------~~~~~~~~~~~~~lil~ls~~t~~~~ 89 (264)
T PRK08227 41 LERIDINIAPLFP-YADVLMCT--------RG----------------------ILRSVVPPATNKPVVLRASGGNSILK 89 (264)
T ss_pred ccChHHHHHHHhh-cCCEEEeC--------hh----------------------HHHhcccccCCCcEEEEEcCCCCCCC
Confidence 3445566777777 79999884 12 3333322 246787776321 1
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec---CCCh-----hhHHHHHHHHHHcCCCeEEEeCCCCh-----HHHHHHHHH---
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP---DVPL-----EETESLQKEAMKNKIELVLFTTPTTP-----TDRMKAIVE--- 213 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip---Dlp~-----ee~~~~~~~~~~~gi~~I~lisp~t~-----~eri~~i~~--- 213 (311)
+....-.---++++.+.|+|+|-+. .-.. ++..++.++|.++|+.++. +.|.-+ .+.+.-.++
T Consensus 90 ~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaa 168 (264)
T PRK08227 90 ELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAA 168 (264)
T ss_pred CCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHH
Confidence 1111111124678999999998873 2112 2356677899999998776 444332 122221111
Q ss_pred -hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCH-----HHHHHHHHcCCcEEEEhhHhhch
Q 021527 214 -ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKP-----EHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 214 -~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~-----e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+...+|= + ..|| +.++++-+.+.+||++-+|=++. +.+....+.||-|+.+|=-+...
T Consensus 169 ELGADiVK-~---~y~~----------~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~ 232 (264)
T PRK08227 169 EMGAQIIK-T---YYVE----------EGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQS 232 (264)
T ss_pred HHcCCEEe-c---CCCH----------HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhcc
Confidence 2223321 1 1221 34666666778999998887742 24566778999999999777664
No 342
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=97.20 E-value=0.047 Score=51.51 Aligned_cols=226 Identities=16% Similarity=0.236 Sum_probs=125.5
Q ss_pred HHHHHcCCccEEE-EEeCCCCCh-hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHH
Q 021527 55 TRLKKQGKVALIP-YITAGDPDL-STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132 (311)
Q Consensus 55 ~~~~~~~~~~li~-yi~~G~P~~-~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~ 132 (311)
++.-++++..+.. ++.|-..+. +.+.+.++.|.+.++|.|-+- |+| .|.+.........
T Consensus 3 ~~~l~~~~~~~s~E~~PPk~~~~~~~l~~~~~~l~~~~pd~vsVT--------d~~-----------~~~~~~~s~~~a~ 63 (287)
T PF02219_consen 3 QQKLKKGEFVVSFELFPPKGADGEEKLLEAAERLKDLGPDFVSVT--------DNP-----------GGSSRMMSLLAAA 63 (287)
T ss_dssp HHHHHTSS-EEEEEE---SSHHHHHHHHHHHHHHHTT--SEEEE-----------G-----------CGTTHHHHHHHHH
T ss_pred hHHHhCCCCEEEEEEeCCCCchHHHHHHHHHHHhcCCCCCEEEee--------cCC-----------CCcccCCcHHHHH
Confidence 3333455655555 334444443 357788999999999999884 221 1122233445667
Q ss_pred HhhccCCCcEEEE-ecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChh------------hHHHHHHHHHH-cC--CC
Q 021527 133 EVVPQMSCPIALF-TYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLE------------ETESLQKEAMK-NK--IE 194 (311)
Q Consensus 133 ~ir~~~~iPiilm-~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~e------------e~~~~~~~~~~-~g--i~ 194 (311)
.++++.+++.+.- +..+ .-+..++..+..+.+.|++.|++ .|.|.. .+.++.+.+++ .+ +.
T Consensus 64 ~l~~~~g~~~i~Hlt~rd-~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~~~~ 142 (287)
T PF02219_consen 64 KLLKETGIEPIPHLTCRD-RNREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQEYGDDFS 142 (287)
T ss_dssp HHHHHTT--EEEEEESTT-SBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHHHHGGGSE
T ss_pred HHHHHhCCceEEeecccC-CCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHHhcCcccc
Confidence 7776666665543 3322 23446678888999999999988 354421 14556666663 22 12
Q ss_pred eEEEeC----CCCh--HHHHHHH-HHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEee-CCCCHHHH
Q 021527 195 LVLFTT----PTTP--TDRMKAI-VEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGF-GISKPEHV 265 (311)
Q Consensus 195 ~I~lis----p~t~--~eri~~i-~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGf-GIst~e~v 265 (311)
.-.-.. |..+ +..++.+ .+...|..|++|-... ....+.++++++|+. .++||++|. .+.+..++
T Consensus 143 i~va~~P~~hp~~~~~~~~~~~l~~Ki~aGA~f~iTQ~~f------d~~~~~~~~~~~~~~g~~~pIi~GI~p~~s~~~~ 216 (287)
T PF02219_consen 143 IGVAGYPEGHPEAPDFEAELKRLKKKIDAGADFIITQPFF------DAEAFERFLDRLREAGIDVPIIPGIMPLTSAKSA 216 (287)
T ss_dssp EEEEE-TTHHTTCSSHHHHHHHHHHHHHTTESEEEEEE-S------SHHHHHHHHHHHHHTTHTSEEEEEEE-HCCHHHH
T ss_pred cccccCCCCCccccCHHHHHHHHHHHHHCCCCEEeccccC------CHHHHHHHHHHHHHcCCCCcEEEEEeccCCHHHH
Confidence 111222 3332 2223222 2234565566542211 124477888889886 478999984 67889999
Q ss_pred HHHHHcCCcEEEEhhHhhchhhhcCCc-----hhHHHHHHHHHHHHHh
Q 021527 266 QQVAGWGADGVIVGSAMVKLLGEAQSP-----EEGLKELEKFAKSLKS 308 (311)
Q Consensus 266 ~~v~~~GADGvIVGSaiv~~~~~~~~~-----~~~~~~~~~~~~~l~~ 308 (311)
..+.++ + ||.|=..+++.+++..+. +.+++...++++++++
T Consensus 217 ~~~~~~-~-Gv~iP~~~~~~l~~~~~~~~~~~~~gi~~a~e~~~~l~~ 262 (287)
T PF02219_consen 217 RFLAKL-C-GVDIPDELIERLEEAKDDPEAVREIGIEIAVELIRELLA 262 (287)
T ss_dssp HHHHHH-H-T-EEEHHHHHHHHTTTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc-c-CccCCHHHHHHHHHhcCCHHHHHHHhHHHHHHHHHHHHH
Confidence 999888 6 999999999999854322 1245566677777654
No 343
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=97.20 E-value=0.078 Score=51.23 Aligned_cols=117 Identities=16% Similarity=0.215 Sum_probs=75.5
Q ss_pred HHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHH----cCCCHHHHH
Q 021527 53 TFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA----RGTNFNAIL 128 (311)
Q Consensus 53 ~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~----~G~~~~~~~ 128 (311)
.|.+++++|++. ..+|+=| .-.++.++++|+|+|-+| |.+ | ...+. ..+++++.+
T Consensus 26 ~l~~~k~~g~ki--vmlTAyD------~~sA~i~d~aGvD~ILVG----DSl--g-------mv~lG~~~T~~Vtld~mi 84 (332)
T PLN02424 26 TLRQKYRRGEPI--TMVTAYD------YPSAVHVDSAGIDVCLVG----DSA--A-------MVVHGHDTTLPITLDEML 84 (332)
T ss_pred HHHHHHhCCCcE--EEEecCC------HHHHHHHHHcCCCEEEEC----CcH--H-------HHhcCCCCCCCcCHHHHH
Confidence 466777776653 3444433 356788899999999998 110 1 11121 236899999
Q ss_pred HHHHHhhccCCCcEEEE----e-cCcchhccCHHHH---HHH-HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeE
Q 021527 129 SMLKEVVPQMSCPIALF----T-YYNPILKRGVDNF---MST-VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 196 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm----~-Y~n~i~~~g~~~f---i~~-~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I 196 (311)
..++.|++..+.|+++- + |- .+.++. +.+ ++++|+++|=+=|-. .+..+..+.+.+.||.++
T Consensus 85 ~H~~aV~Rga~~a~vVaDmPfgSY~-----~s~e~av~nA~rl~~eaGa~aVKlEGg~-~~~~~~I~~l~~~GIPV~ 155 (332)
T PLN02424 85 VHCRAVARGANRPLLVGDLPFGSYE-----SSTDQAVESAVRMLKEGGMDAVKLEGGS-PSRVTAAKAIVEAGIAVM 155 (332)
T ss_pred HHHHHHhccCCCCEEEeCCCCCCCC-----CCHHHHHHHHHHHHHHhCCcEEEECCCc-HHHHHHHHHHHHcCCCEE
Confidence 99999998888998872 2 32 234443 333 478999999886653 233445555668899876
No 344
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=97.18 E-value=0.27 Score=48.08 Aligned_cols=214 Identities=16% Similarity=0.166 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCC----------ChHHHHHHHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLA----------DGPVIQAAATRS 117 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~a----------DGp~Iq~a~~~A 117 (311)
.++.+.++..++++ -++..|= -.+++.+.-++++.++....+|--..|..-.+. ||..+..
T Consensus 13 ~~~~~lL~~A~~~~-yAVgAfN---v~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~----- 83 (357)
T TIGR01520 13 DDVHKLFQYAKENN-FAIPAIN---CTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILG----- 83 (357)
T ss_pred HHHHHHHHHHHHCC-ceEEEEE---eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhh-----
Confidence 57888888876654 4555555 347888899999999999998765433221111 2211211
Q ss_pred HHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH-H--HHHHHHHHcC-----------CcEEEe--cCCChhh-
Q 021527 118 LARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV-D--NFMSTVRDIG-----------IRGLVV--PDVPLEE- 180 (311)
Q Consensus 118 l~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~-~--~fi~~~~~aG-----------adGvii--pDlp~ee- 180 (311)
...+..+++.+.++.++||.+.. + -|. . ++++.|.++| .+.|.+ ..+|+||
T Consensus 84 ------~~~~~~~v~~~Ae~a~VPValHL--D----Hg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeEN 151 (357)
T TIGR01520 84 ------AIAGAHHVHSIAEHYGVPVVLHT--D----HCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEEN 151 (357)
T ss_pred ------HHHHHHHHHHHHHHCCCCEEEEC--C----CCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHH
Confidence 11245677888888899999853 1 121 1 6788888886 888887 5789987
Q ss_pred ---HHHHHHHHHHcCCCeEE---Ee---------------CCCChHHHHHHHHHhC---CceEEE----EecCCccC-CC
Q 021527 181 ---TESLQKEAMKNKIELVL---FT---------------TPTTPTDRMKAIVEAS---EGFVYL----VSSIGVTG-AR 231 (311)
Q Consensus 181 ---~~~~~~~~~~~gi~~I~---li---------------sp~t~~eri~~i~~~a---~gfiY~----vs~~G~TG-~~ 231 (311)
..++.+.++..|+.+=- -+ ..-|.++..++..+.. .|...+ .+..|.+- ..
T Consensus 152 I~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~ 231 (357)
T TIGR01520 152 IEICVKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGN 231 (357)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCC
Confidence 56788888888873210 00 0124445555665533 254443 34555541 22
Q ss_pred CCCCchHHHHHHHH----hhcCCCc------EEE--eeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 232 ASISGHVQTLLREI----KESSTKP------VAV--GFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 232 ~~~~~~~~~~l~~v----k~~~~~P------v~v--GfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
..++. +.|+++ ++.+++| ++. |.|+. .|+++++.+.|.-=|=|+|.+....
T Consensus 232 p~Ld~---d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~-~e~i~kai~~GI~KINi~Tdl~~A~ 294 (357)
T TIGR01520 232 VKLTP---DILADGQEYVSEKLGLPAAKPLFFVFHGGSGST-KQEIKEALSYGVVKMNIDTDTQWAY 294 (357)
T ss_pred CccCH---HHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCC-HHHHHHHHHCCCeEEEeCcHHHHHH
Confidence 23443 456666 4566777 655 66775 6999999999999999999886644
No 345
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=97.17 E-value=0.08 Score=50.38 Aligned_cols=179 Identities=11% Similarity=0.129 Sum_probs=104.9
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.+.|+|.|-++--.. ++ .-.+.++-.++++.+++. -++|++.-+-.|
T Consensus 23 g~iD~~~l~~li~~l~~~Gv~Gi~~~GstG----E~------------~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~ 86 (303)
T PRK03620 23 GSFDEAAYREHLEWLAPYGAAALFAAGGTG----EF------------FSLTPDEYSQVVRAAVETTAGRVPVIAGAGGG 86 (303)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCCc----Cc------------ccCCHHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 556678999999999999999998851111 11 124556666777776654 358987754322
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--CC---ChhhHHH-HHHHHHHcCCCeEEEeCCC--ChHHHHHHHHHhCCceEEE
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--DV---PLEETES-LQKEAMKNKIELVLFTTPT--TPTDRMKAIVEASEGFVYL 221 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--Dl---p~ee~~~-~~~~~~~~gi~~I~lisp~--t~~eri~~i~~~a~gfiY~ 221 (311)
. ...-+.++.+.++|+|++++. -. ..++..+ |...+...++.++++=.|. .+.+-+.++++.-..++++
T Consensus 87 t---~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~pni~gi 163 (303)
T PRK03620 87 T---AQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAERCPNLVGF 163 (303)
T ss_pred H---HHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhCCCEEEE
Confidence 1 123457778899999998883 11 1244444 4555666678766553332 2456677776344455544
Q ss_pred EecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 222 VSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 222 vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
=.. +| +. ..+.++++.. +.-|+.|+.- .-..+-....+|++|.|.|.+
T Consensus 164 K~s---~~-------d~-~~~~~~~~~~~~~f~vl~G~d~-~e~~~~~~~~~G~~G~is~~a 213 (303)
T PRK03620 164 KDG---VG-------DI-ELMQRIVRALGDRLLYLGGLPT-AEVFAAAYLALGVPTYSSAVF 213 (303)
T ss_pred EeC---CC-------CH-HHHHHHHHHcCCCeEEEeCCCc-chhhHHHHHhCCCCEEEecHH
Confidence 211 11 11 2344443333 4456655531 123344556789999998764
No 346
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=97.16 E-value=0.054 Score=50.75 Aligned_cols=177 Identities=16% Similarity=0.157 Sum_probs=105.3
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcEEEEecC
Q 021527 71 AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM--SCPIALFTYY 148 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPiilm~Y~ 148 (311)
-|.=|.+.+.+.++.|.+.|+|.+-+.--. | ...-.|.++..++++.+++.. ++||+.-.-.
T Consensus 15 dg~iD~~~~~~~i~~l~~~Gv~gl~v~Gst------G----------E~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~ 78 (284)
T cd00950 15 DGSVDFDALERLIEFQIENGTDGLVVCGTT------G----------ESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS 78 (284)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCC------c----------chhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC
Confidence 345556889999999999999999885111 1 112256666677777766553 5787775543
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEec--CC---ChhhHHH-HHHHHHHcCCCeEEEeCCC-----ChHHHHHHHHHhCCc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVP--DV---PLEETES-LQKEAMKNKIELVLFTTPT-----TPTDRMKAIVEASEG 217 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviip--Dl---p~ee~~~-~~~~~~~~gi~~I~lisp~-----t~~eri~~i~~~a~g 217 (311)
+... ..-+.++.+.++|+|++++. .. ..++..+ |+..+...++.++++=.|. .+.+-++++++. ..
T Consensus 79 ~~~~--~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~-p~ 155 (284)
T cd00950 79 NNTA--EAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEH-PN 155 (284)
T ss_pred ccHH--HHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcC-CC
Confidence 3221 12457778899999999883 21 2245555 4555566688877664443 234666666653 34
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
++.+=- .++ +. ..+.+++... +..++.|.. +.+......|++|.+.|.+
T Consensus 156 v~giK~---s~~-------~~-~~~~~~~~~~~~~~~v~~G~d----~~~~~~~~~G~~G~~s~~~ 206 (284)
T cd00950 156 IVGIKE---ATG-------DL-DRVSELIALCPDDFAVLSGDD----ALTLPFLALGGVGVISVAA 206 (284)
T ss_pred EEEEEE---CCC-------CH-HHHHHHHHhCCCCeEEEeCCh----HhHHHHHHCCCCEEEehHH
Confidence 443311 011 11 2344444433 344555532 4556667899999998865
No 347
>PLN02417 dihydrodipicolinate synthase
Probab=97.15 E-value=0.042 Score=51.72 Aligned_cols=175 Identities=14% Similarity=0.175 Sum_probs=100.9
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.+.|+|.|-++--.. +++. .+.++-.++++.+.+. -++||+.-.-.|
T Consensus 17 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstG----E~~~------------ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~ 80 (280)
T PLN02417 17 GRFDLEAYDSLVNMQIENGAEGLIVGGTTG----EGQL------------MSWDEHIMLIGHTVNCFGGKIKVIGNTGSN 80 (280)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCc----chhh------------CCHHHHHHHHHHHHHHhCCCCcEEEECCCc
Confidence 556678999999999999999999852211 1211 4555556666665543 358888765433
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHHHHHHHHHcCCCeEEEeCC-----CChHHHHHHHHHhCCceE
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETESLQKEAMKNKIELVLFTTP-----TTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~~~~~~~~~gi~~I~lisp-----~t~~eri~~i~~~a~gfi 219 (311)
... ..-+..+.+.++|+|++++. . ...++..++.+.+.+.. ..+++=.| ..+.+-++++++ -..++
T Consensus 81 ~t~--~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~-pi~lYn~P~~tg~~l~~~~l~~l~~-~pni~ 156 (280)
T PLN02417 81 STR--EAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG-PTIIYNVPGRTGQDIPPEVIFKIAQ-HPNFA 156 (280)
T ss_pred cHH--HHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC-CEEEEEChhHhCcCCCHHHHHHHhc-CCCEE
Confidence 221 12346667889999999883 1 22356666666665556 55444333 223566666654 24455
Q ss_pred EEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHH-HHcCCcEEEEhhHhh
Q 021527 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQV-AGWGADGVIVGSAMV 283 (311)
Q Consensus 220 Y~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v-~~~GADGvIVGSaiv 283 (311)
.+=. .+| + ..+.+.+. .++.|+.|.. +.+-.. +..|+||+|.|.+-+
T Consensus 157 giKd---ss~-----~----~~~~~~~~-~~~~v~~G~d----~~~~~~~l~~Ga~G~is~~~n~ 204 (280)
T PLN02417 157 GVKE---CTG-----N----DRVKQYTE-KGILLWSGND----DECHDARWDYGADGVISVTSNL 204 (280)
T ss_pred EEEe---CCC-----c----HHHHHHhc-CCeEEEEccc----HHhhHHHHhCCCCEEEecHHHh
Confidence 4421 111 1 12232222 2456666654 233333 668999999986643
No 348
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=97.15 E-value=0.04 Score=49.92 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=65.0
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
..++.+...++++.+.+. ++++++|.|+ +. ..| .+.++++++.. .||++..-.+++
T Consensus 6 D~~~~~~a~~i~~~~~~~-v~~iKvg~~l---------~~-------~~g------~~~i~~l~~~~-~~i~~DlK~~DI 61 (216)
T cd04725 6 DPPDEEFALALIDALGPY-VCAVKVGLEL---------FE-------AAG------PEIVKELRELG-FLVFLDLKLGDI 61 (216)
T ss_pred CCCCHHHHHHHHHhcCCc-ccEEEECHHH---------HH-------hcC------HHHHHHHHHCC-CcEEEEeecCch
Confidence 445568888999887765 8999999776 11 122 35777777654 788887765544
Q ss_pred hccCHHHHHHHHHHcCCcEEEecCCChhh-HHHHHHHHHHcCCCeE
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVPDVPLEE-TESLQKEAMKNKIELV 196 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviipDlp~ee-~~~~~~~~~~~gi~~I 196 (311)
-.+ ....++.+.+.|+|.+.+.-+.-.+ ...+.+..++++-..+
T Consensus 62 g~t-v~~~~~~~~~~gad~~Tvh~~~G~~~l~~~~~~~~~~~~~~~ 106 (216)
T cd04725 62 PNT-VAAAAEALLGLGADAVTVHPYGGSDMLKAALEAAEEKGKGLF 106 (216)
T ss_pred HHH-HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHHHhccCCeEE
Confidence 321 1235556778899999998655333 4556666666664433
No 349
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=97.13 E-value=0.022 Score=53.98 Aligned_cols=170 Identities=15% Similarity=0.145 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-C---CCcEEEEecCcch
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-M---SCPIALFTYYNPI 151 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~---~iPiilm~Y~n~i 151 (311)
.++-+++++.|.+.|+|.||+|+|-.. |. -++.++++.+. . ++.+..++
T Consensus 22 ~~~Ki~ia~~L~~~Gv~~IE~gfP~~~---~~-------------------e~e~~~~i~~~~~~~~~~~~~al~----- 74 (284)
T cd07942 22 VEQKLRFFKLLVKIGFKEIEVGFPSAS---QT-------------------DFDFVRELIEEDLIPDDVTIQVLT----- 74 (284)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCC---HH-------------------HHHHHHHHHHccCCCCCCEEEEEc-----
Confidence 467789999999999999999986632 21 12355555322 1 23333322
Q ss_pred hccCHHHHHHHHHHc--CCc--EEEe--c--C--------CChhh----HHHHHHHHHHcCCCe-----EEEeCC----C
Q 021527 152 LKRGVDNFMSTVRDI--GIR--GLVV--P--D--------VPLEE----TESLQKEAMKNKIEL-----VLFTTP----T 202 (311)
Q Consensus 152 ~~~g~~~fi~~~~~a--Gad--Gvii--p--D--------lp~ee----~~~~~~~~~~~gi~~-----I~lisp----~ 202 (311)
......++.+.++ |++ .+.+ + | ...+| ..+..+.++++|++. -+-..+ .
T Consensus 75 --r~~~~die~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr 152 (284)
T cd07942 75 --QAREDLIERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSD 152 (284)
T ss_pred --CCChhhHHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCC
Confidence 1223345666665 554 3433 2 2 12233 344566778888641 122233 4
Q ss_pred ChHHHHHHHHHhCC-----ce--EEEEecCCccCCCCCCCchHHHHHHHHhhcCC----CcEEE----eeCCCCHHHHHH
Q 021527 203 TPTDRMKAIVEASE-----GF--VYLVSSIGVTGARASISGHVQTLLREIKESST----KPVAV----GFGISKPEHVQQ 267 (311)
Q Consensus 203 t~~eri~~i~~~a~-----gf--iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~----~Pv~v----GfGIst~e~v~~ 267 (311)
++.+++.++.+... |. .--++..-++|. ..|..+.++++.+++... +|+-+ .+|-.. .|.-.
T Consensus 153 ~~~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG~--a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~-AN~la 229 (284)
T cd07942 153 TELDFALEVCEAVIDVWQPTPENKIILNLPATVEV--ATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGV-AAAEL 229 (284)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCcceEEEccccccc--cCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHH-HHHHH
Confidence 55676666555421 21 112333346664 346678889999988652 33433 223332 44556
Q ss_pred HHHcCCcEEE
Q 021527 268 VAGWGADGVI 277 (311)
Q Consensus 268 v~~~GADGvI 277 (311)
.+++||+.+=
T Consensus 230 A~~aG~~~id 239 (284)
T cd07942 230 ALLAGADRVE 239 (284)
T ss_pred HHHhCCCEEE
Confidence 6789998763
No 350
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.12 E-value=0.31 Score=47.59 Aligned_cols=211 Identities=11% Similarity=0.118 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.++..++.+ -++..|= -.+++...-++++.++.++.+|---.|-.-.+.. .+.+.
T Consensus 5 ~~k~lL~~A~~~~-yAVgAfN---~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g-----------------~~~~~ 63 (347)
T PRK09196 5 SLRQLLDHAAEHG-YGVPAFN---VNNLEQVQAIMEAADETDSPVILQASAGARKYAG-----------------EPFLR 63 (347)
T ss_pred cHHHHHHHHHHcC-ceEEEee---eCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCC-----------------HHHHH
Confidence 4567777765553 4555554 4578999999999999999987664333222222 22234
Q ss_pred HHHHHhhccCC-CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCC-------Chhh----HHHHHHHHHHcCCC
Q 021527 129 SMLKEVVPQMS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDV-------PLEE----TESLQKEAMKNKIE 194 (311)
Q Consensus 129 ~~i~~ir~~~~-iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDl-------p~ee----~~~~~~~~~~~gi~ 194 (311)
.+++...++.. +||.+-. + +..-.+.+..+.++|.+.|.+ ..+ |+|| ..++.+.++.+|+.
T Consensus 64 ~~~~~~a~~~~~VPValHL--D---Hg~~~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~ 138 (347)
T PRK09196 64 HLILAAVEEYPHIPVVMHQ--D---HGNSPATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVS 138 (347)
T ss_pred HHHHHHHHhCCCCcEEEEC--C---CCCCHHHHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 46666666664 9998853 2 222346788999999999888 345 8887 56788888888763
Q ss_pred eE----EE--e--------------------CCCChHHHHHHHHHhCCceEEE----EecCCccCC--CCCCCchHHHHH
Q 021527 195 LV----LF--T--------------------TPTTPTDRMKAIVEASEGFVYL----VSSIGVTGA--RASISGHVQTLL 242 (311)
Q Consensus 195 ~I----~l--i--------------------sp~t~~eri~~i~~~a~gfiY~----vs~~G~TG~--~~~~~~~~~~~l 242 (311)
+= .+ . .--|.++..++..+. .|..++ .+..|.+-. +...+.=-.+.+
T Consensus 139 VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~-TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL 217 (347)
T PRK09196 139 VEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKK-TQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRI 217 (347)
T ss_pred EEEEEeeccCccccccccccCcccccccchhhcCCCHHHHHHHHHH-hCcCeEhhhhccccCCCCCCCCCChhhccHHHH
Confidence 21 01 0 002334444455443 344444 244453321 111000123578
Q ss_pred HHHhhcC-CCcEEE--eeCCC--------------------CHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 243 REIKESS-TKPVAV--GFGIS--------------------KPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 243 ~~vk~~~-~~Pv~v--GfGIs--------------------t~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
++|++.+ ++|++. |.|+. ..|+++++.+.|.-=|=|+|.+....
T Consensus 218 ~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~ 284 (347)
T PRK09196 218 KEIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAM 284 (347)
T ss_pred HHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHHHHH
Confidence 8998988 799866 55551 46999999999999999999886644
No 351
>PRK14567 triosephosphate isomerase; Provisional
Probab=97.11 E-value=0.0089 Score=55.79 Aligned_cols=122 Identities=20% Similarity=0.296 Sum_probs=74.4
Q ss_pred HHHHHHHcCCcEEEecCC----ChhhHH----HHHHHHHHcCCCeEEEeCCCChHHH------------HHHHHH-----
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEETE----SLQKEAMKNKIELVLFTTPTTPTDR------------MKAIVE----- 213 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee~~----~~~~~~~~~gi~~I~lisp~t~~er------------i~~i~~----- 213 (311)
-...+++.|++.+++..- .+.|.. .-...+.++|+.+|+-+.- +.++| ++....
T Consensus 77 S~~mLkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGE-t~eere~g~~~~vv~~Ql~~~l~~i~~~ 155 (253)
T PRK14567 77 SARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGE-SLDDRQSGKLKQVLATQLSLILENLSVE 155 (253)
T ss_pred CHHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHHcCCHHHHHHHHHHHHHccCCHH
Confidence 345678888888888631 122222 2334567788887776664 33444 111111
Q ss_pred -hCCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc---------CCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhh
Q 021527 214 -ASEGFVYLVS--SIGVTGARASISGHVQTLLREIKES---------STKPVAVGFGISKPEHVQQVAGWG-ADGVIVGS 280 (311)
Q Consensus 214 -~a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~---------~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGS 280 (311)
...-.|-|.+ ..| ||.. ..+....+..+.+|+. .+++|++|++| +++++++++..+ .||+-||+
T Consensus 156 ~~~~ivIAYEPvWAIG-TG~~-as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV-~~~N~~~l~~~~diDG~LVGg 232 (253)
T PRK14567 156 QLAKVVIAYEPVWAIG-TGVV-ASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSL-KAENAKDILSLPDVDGGLIGG 232 (253)
T ss_pred HhCCEEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcC-CHHHHHHHHcCCCCCEEEeeh
Confidence 0111233322 222 5542 2345566666667762 25899999999 599999998887 99999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
+-.+
T Consensus 233 asL~ 236 (253)
T PRK14567 233 ASLK 236 (253)
T ss_pred hhhc
Confidence 9876
No 352
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=97.10 E-value=0.32 Score=47.49 Aligned_cols=224 Identities=17% Similarity=0.174 Sum_probs=134.0
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
+.+++.++..+++| -++..|=+ .+++...-++++.++....+|---.|..-.++.|..+..--+-++-.| ...+
T Consensus 7 ~~~k~~L~~A~~~~-yAV~AfNv---~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~--~~~~ 80 (350)
T PRK09197 7 EDYQEMFDRAKENG-FALPAVNV---VGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLG--AIAG 80 (350)
T ss_pred HHHHHHHHHHHHCC-ceEEEEEe---CCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhh--HHHH
Confidence 45678888776554 46666653 478888999999999999987654333222222211000000000000 0114
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCH--HHHHHHHHHcC-----------CcEEEe--cCCChhh----HHHHHHHH
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGV--DNFMSTVRDIG-----------IRGLVV--PDVPLEE----TESLQKEA 188 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~--~~fi~~~~~aG-----------adGvii--pDlp~ee----~~~~~~~~ 188 (311)
..+++...++.++||.|-. + +... .++++.+.++| .+.|.+ ..+|+|| ..++.+.+
T Consensus 81 ~~~v~~~A~~~~VPValHL--D---Hg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~A 155 (350)
T PRK09197 81 AKHVHEVAEHYGVPVILHT--D---HCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERM 155 (350)
T ss_pred HHHHHHHHHHCCCCEEEEC--C---CCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHH
Confidence 5677888888899998853 1 1112 34677777766 888877 4688887 56788888
Q ss_pred HHcCCCeE----EE------e---C-----CCChHHHHHHHHHhCCc---eEEE-E---ecCCccC-CCCCCCchHHHHH
Q 021527 189 MKNKIELV----LF------T---T-----PTTPTDRMKAIVEASEG---FVYL-V---SSIGVTG-ARASISGHVQTLL 242 (311)
Q Consensus 189 ~~~gi~~I----~l------i---s-----p~t~~eri~~i~~~a~g---fiY~-v---s~~G~TG-~~~~~~~~~~~~l 242 (311)
+.+|+.+= .+ . . .-|.++..++..+...- ...+ + +..|.+- ....+ ..+.+
T Consensus 156 h~~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~L---d~e~L 232 (350)
T PRK09197 156 AKAGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKL---RPEIL 232 (350)
T ss_pred HHcCCEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCcc---CHHHH
Confidence 88887421 11 1 0 02344555556554321 1333 3 3444332 11122 24678
Q ss_pred HHHhhcC---------CCcEEE--eeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 243 REIKESS---------TKPVAV--GFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 243 ~~vk~~~---------~~Pv~v--GfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+++++.+ ++|++. |.|+. .|+++++.+.|.-=|=|+|.+....
T Consensus 233 ~~I~~~v~~~~~~~~~~vPLVLHGgSGip-de~i~~ai~~GI~KINi~T~l~~a~ 286 (350)
T PRK09197 233 KDSQEYVSKKFGLPAKPFDFVFHGGSGST-LEEIREAVSYGVVKMNIDTDTQWAF 286 (350)
T ss_pred HHHHHHHHHhhCCCCCCCCEEEeCCCCCC-HHHHHHHHHCCCeeEEeCcHHHHHH
Confidence 8888877 799866 67775 6999999999999999999886644
No 353
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=97.09 E-value=0.32 Score=47.43 Aligned_cols=223 Identities=17% Similarity=0.185 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHH----HHHHHHHHHcCCCH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVI----QAAATRSLARGTNF 124 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~I----q~a~~~Al~~G~~~ 124 (311)
.+.+.|+..++++ -++..|= -.+++...-++++.++.+..+|----|-.-.+..|... |+++-+ ..
T Consensus 3 ~~k~iL~~A~~~~-yAV~AfN---~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~------~~ 72 (345)
T cd00946 3 DVLKLFDYAKENG-FAIPAVN---CTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIA------GA 72 (345)
T ss_pred HHHHHHHHHHHCC-ceEEEEe---eCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhh------hH
Confidence 3566777665553 4555554 34778888999999999999876543321111112100 000000 00
Q ss_pred HHHHHHHHHhhccCCCcEEEEe---c------CcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHH
Q 021527 125 NAILSMLKEVVPQMSCPIALFT---Y------YNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAM 189 (311)
Q Consensus 125 ~~~~~~i~~ir~~~~iPiilm~---Y------~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~ 189 (311)
..+..+++.+.++.++||.|-. . ++.+...+ .++++.+.+.|.+.|.+ ..+|+|| ..++.+.++
T Consensus 73 ~~~~~~v~~~A~~~~VPValHLDHg~~~~~~~~~~~~~a~-~~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah 151 (345)
T cd00946 73 IAAAHHVRSMAEHYGVPVVLHTDHCAKKLLPWFDGLLEAD-EEYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMA 151 (345)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCccchhhHHHHHHH-HHHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHH
Confidence 1245677777788899998863 1 11111111 34566677889999887 4688887 667888888
Q ss_pred HcCCCeEE---Ee--------CC-------CChHHHHHHHHHhC---CceEEE-E---ecCCccC-CCCCCCchHHHHHH
Q 021527 190 KNKIELVL---FT--------TP-------TTPTDRMKAIVEAS---EGFVYL-V---SSIGVTG-ARASISGHVQTLLR 243 (311)
Q Consensus 190 ~~gi~~I~---li--------sp-------~t~~eri~~i~~~a---~gfiY~-v---s~~G~TG-~~~~~~~~~~~~l~ 243 (311)
.+|+.+=- -+ .. -|.++...+..+.. .|...+ + +..|.+- ....++. +.|+
T Consensus 152 ~~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~---~~L~ 228 (345)
T cd00946 152 KINMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQP---EILG 228 (345)
T ss_pred HcCCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCH---HHHH
Confidence 88873210 01 00 24445555666543 254444 3 4445432 1223333 4555
Q ss_pred HH----hhcC------CCcEEE--eeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 244 EI----KESS------TKPVAV--GFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 244 ~v----k~~~------~~Pv~v--GfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
++ ++.+ ++|++. |.|+. .|+++++.+.|.-=|=|+|.+....
T Consensus 229 ~I~~~i~~~~~~~~~~~ipLVLHGgSG~~-~e~i~kai~~GI~KiNi~T~l~~a~ 282 (345)
T cd00946 229 EHQDYVREKLGLADDKPLYFVFHGGSGST-KEEIREAISYGVVKMNIDTDTQWAY 282 (345)
T ss_pred HHHHHHHHhhccccCCCCCEEEeCCCCCC-HHHHHHHHHcCCeeEEeCcHHHHHH
Confidence 55 5544 688765 67775 7999999999999999999886544
No 354
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=97.08 E-value=0.067 Score=50.57 Aligned_cols=171 Identities=15% Similarity=0.192 Sum_probs=98.7
Q ss_pred ChhhHHHHHHHHHHCC-----CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecC
Q 021527 75 DLSTTAEALKLLDSCG-----SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYY 148 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~G-----aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~ 148 (311)
+.++-+++++.|.+.| +|.||++ +|+. +| .+.++++.+. .+.|-+. ||
T Consensus 19 ~~~~Kv~i~~~L~~~G~~~~~v~~IE~~-s~~~--~d---------------------~~~v~~~~~~~~~~~~v~--~~ 72 (279)
T cd07947 19 TVEQIVKIYDYLHELGGGSGVIRQTEFF-LYTE--KD---------------------REAVEACLDRGYKFPEVT--GW 72 (279)
T ss_pred CHHHHHHHHHHHHHcCCCCCccceEEec-CcCh--HH---------------------HHHHHHHHHcCCCCCEEE--EE
Confidence 6678899999999999 9999994 5543 11 1233343322 2223322 22
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEec----C--------CChhh----HHHHHHHHHHcCCCeEEEeCCCChH-------
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVP----D--------VPLEE----TESLQKEAMKNKIELVLFTTPTTPT------- 205 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviip----D--------lp~ee----~~~~~~~~~~~gi~~I~lisp~t~~------- 205 (311)
. ....+-++.+.++|++.+.+. | ...+| ..+..+.++++|+.+.+.+-..++.
T Consensus 73 ~----r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~~v~ 148 (279)
T cd07947 73 I----RANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVL 148 (279)
T ss_pred e----cCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcccchH
Confidence 1 223566788999999988773 1 11233 4556777889998866655322222
Q ss_pred HHHHHHHHhC--CceEEEEecCCccCCCCC-----CCchHHHHHHHHhhcCCCc---EEE----eeCCCCHHHHHHHHHc
Q 021527 206 DRMKAIVEAS--EGFVYLVSSIGVTGARAS-----ISGHVQTLLREIKESSTKP---VAV----GFGISKPEHVQQVAGW 271 (311)
Q Consensus 206 eri~~i~~~a--~gfiY~vs~~G~TG~~~~-----~~~~~~~~l~~vk~~~~~P---v~v----GfGIst~e~v~~v~~~ 271 (311)
+.++++.+.. .|....++..-++|..++ +|..+.++++.+|+.++.| +-+ .+|.. ..+.-..+++
T Consensus 149 ~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla-~AN~laA~~a 227 (279)
T cd07947 149 PFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKA-VANAVAAWLY 227 (279)
T ss_pred HHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChH-HHHHHHHHHh
Confidence 2445554532 343211222234554332 3456889999999876655 433 23333 2455666778
Q ss_pred CCcEE
Q 021527 272 GADGV 276 (311)
Q Consensus 272 GADGv 276 (311)
|++-+
T Consensus 228 G~~~v 232 (279)
T cd07947 228 GASWV 232 (279)
T ss_pred CCCEE
Confidence 98765
No 355
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=97.06 E-value=0.001 Score=59.65 Aligned_cols=66 Identities=30% Similarity=0.507 Sum_probs=51.8
Q ss_pred CceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 216 ~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.+.+.+- .|--|++.+.+. +++..+.+.+.-||++|+||+-.|++..+.+.|.+||+||||+.+-.
T Consensus 152 ~~lIvLD--i~aVGt~~G~~~---E~l~~~~~~s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~ 217 (229)
T COG1411 152 PGLIVLD--IGAVGTKSGPDY---ELLTKVLELSEHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEGV 217 (229)
T ss_pred CCeEEEE--ccccccccCCCH---HHHHHHHHhccCceeecCCcCcHHHHHHHhcCCCceeeehhhhhcCc
Confidence 4555552 133456656664 66777777778899999999999999999999999999999998744
No 356
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=97.06 E-value=0.31 Score=46.75 Aligned_cols=209 Identities=14% Similarity=0.141 Sum_probs=132.2
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+.++..++++ -++..|= ..+++...-++++.++.+..+|--..|-.-.+ ...+.+..
T Consensus 5 ~k~lL~~A~~~~-yaV~AfN---~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~-----------------~g~~~~~~ 63 (307)
T PRK05835 5 GNEILLKAHKEG-YGVGAFN---FVNFEMLNAIFEAGNEENSPLFIQASEGAIKY-----------------MGIDMAVG 63 (307)
T ss_pred HHHHHHHHHHCC-ceEEEEE---ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhh-----------------CChHHHHH
Confidence 466676666554 4555554 34788889999999999999876542221111 12333455
Q ss_pred HHHHhhccCC-CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeE----EE
Q 021527 130 MLKEVVPQMS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELV----LF 198 (311)
Q Consensus 130 ~i~~ir~~~~-iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I----~l 198 (311)
+++.+.++.+ +||.+-. + +.--.+.+..|.++|.+.|.+ ..+|+|| ..++.+.++.+|+.+= .+
T Consensus 64 ~~~~~a~~~~~VPValHL--D---Hg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~v 138 (307)
T PRK05835 64 MVKIMCERYPHIPVALHL--D---HGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRL 138 (307)
T ss_pred HHHHHHHhcCCCeEEEEC--C---CCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 7777777775 9999852 2 222356888999999999988 4688887 6678888888887421 11
Q ss_pred e--------C----CCChHHHHHHHHHhCCceEEE-E---ecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCC
Q 021527 199 T--------T----PTTPTDRMKAIVEASEGFVYL-V---SSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGIS 260 (311)
Q Consensus 199 i--------s----p~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIs 260 (311)
- . .-|+++..++..+. .|..++ + +..|..-.+ +-|.=..+.|+++++.+++|++. |.|+.
T Consensus 139 gg~ed~~~~~~~~~~~TdPeeA~~Fv~~-TgvD~LAvaiGt~HG~Yk~~-~~p~L~f~~L~~I~~~~~iPLVLHGgSGip 216 (307)
T PRK05835 139 MGIEDNISVDEKDAVLVNPKEAEQFVKE-SQVDYLAPAIGTSHGAFKFK-GEPKLDFERLQEVKRLTNIPLVLHGASAIP 216 (307)
T ss_pred CCccCCcccccccccCCCHHHHHHHHHh-hCCCEEEEccCccccccCCC-CCCccCHHHHHHHHHHhCCCEEEeCCCCCc
Confidence 0 0 02334545555553 344444 3 333332100 11111236788898888999876 66775
Q ss_pred CH--------------------HHHHHHHHcCCcEEEEhhHhhchh
Q 021527 261 KP--------------------EHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 261 t~--------------------e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.- |+++++.+.|.-=|=|+|.+-...
T Consensus 217 ~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~ 262 (307)
T PRK05835 217 DDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAF 262 (307)
T ss_pred hHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChHHHHHH
Confidence 32 389999999999999999886544
No 357
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.05 E-value=0.1 Score=52.66 Aligned_cols=184 Identities=13% Similarity=0.150 Sum_probs=105.5
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDN 158 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~ 158 (311)
..+.++...+.|+|++=+-+.-..|= -++.+..-++.+.+. -.+|.++. | -..+.
T Consensus 266 ~~eda~~a~~~GaD~lGfIf~~~SpR----------------~V~~~~a~~i~~~l~---v~~VgVfv--~----~~~~~ 320 (454)
T PRK09427 266 RPQDAKAAYDAGAVYGGLIFVEKSPR----------------YVSLEQAQEIIAAAP---LRYVGVFR--N----ADIED 320 (454)
T ss_pred CHHHHHHHHhCCCCEEeeEeCCCCCC----------------CCCHHHHHHHHHhCC---CCEEEEEe--C----CCHHH
Confidence 56778889999999987754223331 123322222333332 12466653 3 23455
Q ss_pred HHHHHHHcCCcEEEecC-CChhhHHHHHHHHHH---cCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCC
Q 021527 159 FMSTVRDIGIRGLVVPD-VPLEETESLQKEAMK---NKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASI 234 (311)
Q Consensus 159 fi~~~~~aGadGviipD-lp~ee~~~~~~~~~~---~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~ 234 (311)
..+.+.+++.|.+=++. .+++ +.+.+++ .++..+..+......+ .... ... .++.+-+..|.||.. .
T Consensus 321 i~~i~~~~~lD~vQLHG~e~~~----~~~~l~~~~~~~~~iikai~v~~~~~-~~~~-~~~-d~~LlDs~~GGtG~~--~ 391 (454)
T PRK09427 321 IVDIAKQLSLAAVQLHGDEDQA----YIDALREALPKTCQIWKAISVGDTLP-ARDL-QHV-DRYLLDNGQGGTGQT--F 391 (454)
T ss_pred HHHHHHHcCCCEEEeCCCCCHH----HHHHHHhhcCCCCeEEEEeecCchhh-hhhh-cCC-CEEEEcCCCCCCCCc--c
Confidence 55668899999998874 3333 3333443 2355555544432212 1111 111 233333555667753 3
Q ss_pred CchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 235 SGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 235 ~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
+.. .+.. ....|++..+|++ |+|+.++...+.+||=|-|.+...- .....+++++|++.++.
T Consensus 392 DW~---~l~~---~~~~p~iLAGGL~-peNV~~ai~~~P~gVDVsSGVE~~p-----G~KD~~Ki~~Fi~~vr~ 453 (454)
T PRK09427 392 DWS---LLPG---QSLDNVLLAGGLN-PDNCQQAAQLGCAGLDFNSGVESAP-----GIKDAQKLASVFQTLRA 453 (454)
T ss_pred ChH---Hhhh---cccCCEEEECCCC-HHHHHHHHhcCCCEEEeCCcccCCC-----CCcCHHHHHHHHHHHhh
Confidence 332 2322 2257999999996 8999998888999999988876421 12346889999988764
No 358
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=97.04 E-value=0.09 Score=49.45 Aligned_cols=182 Identities=18% Similarity=0.238 Sum_probs=106.8
Q ss_pred EEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEE
Q 021527 67 PYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIAL 144 (311)
Q Consensus 67 ~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiil 144 (311)
||=--|.-|.+.+.+.++.+.+.|+|.|-+.--- -+++ -.+.++..++++.+.+. -++||+.
T Consensus 9 Pf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~Gst----GE~~------------~Ls~~Er~~~~~~~~~~~~~~~~vi~ 72 (285)
T TIGR00674 9 PFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTT----GESP------------TLSHEEHKKVIEFVVDLVNGRVPVIA 72 (285)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccC----cccc------------cCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 3444577888999999999999999999884111 1111 13455555666665543 3588877
Q ss_pred EecCcchhccCHHHHHHHHHHcCCcEEEec-----CCChhhHHH-HHHHHHHcCCCeEEEeCCC-----ChHHHHHHHHH
Q 021527 145 FTYYNPILKRGVDNFMSTVRDIGIRGLVVP-----DVPLEETES-LQKEAMKNKIELVLFTTPT-----TPTDRMKAIVE 213 (311)
Q Consensus 145 m~Y~n~i~~~g~~~fi~~~~~aGadGviip-----Dlp~ee~~~-~~~~~~~~gi~~I~lisp~-----t~~eri~~i~~ 213 (311)
-.-.+... ..-+..+.++++|+|++++. -...++..+ |...+++.++.++++=.|. .+.+-++++++
T Consensus 73 gv~~~s~~--~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 73 GTGSNATE--EAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAE 150 (285)
T ss_pred eCCCccHH--HHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence 65433221 12346677899999999883 122245544 4555666788877664453 23466666654
Q ss_pred hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 214 ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 214 ~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.. .++.+ +.... +. ..+.++++.. +..++.|.. +..-..+..|+||.+.|.+-
T Consensus 151 ~~-~v~gi---------K~s~~-d~-~~~~~l~~~~~~~~~v~~G~d----~~~~~~~~~G~~G~i~~~~~ 205 (285)
T TIGR00674 151 EP-NIVAI---------KEATG-NL-ERISEIKAIAPDDFVVLSGDD----ALTLPMMALGGKGVISVTAN 205 (285)
T ss_pred CC-CEEEE---------EeCCC-CH-HHHHHHHHhcCCCeEEEECch----HHHHHHHHcCCCEEEehHHH
Confidence 32 33332 11111 11 2344444433 355655543 45556677999999988663
No 359
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=97.03 E-value=0.063 Score=50.60 Aligned_cols=179 Identities=18% Similarity=0.212 Sum_probs=102.5
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecC
Q 021527 71 AGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYY 148 (311)
Q Consensus 71 ~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~ 148 (311)
-|.-|.+.+.+.++.|.+.|+|.+-+.--- .+++ -.+.++..++++.+++. -++||+.-...
T Consensus 16 dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~----GE~~------------~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~ 79 (292)
T PRK03170 16 DGSVDFAALRKLVDYLIANGTDGLVVVGTT----GESP------------TLTHEEHEELIRAVVEAVNGRVPVIAGTGS 79 (292)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCcC----Cccc------------cCCHHHHHHHHHHHHHHhCCCCcEEeecCC
Confidence 345567899999999999999999874111 1121 14556666677666654 34787765443
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEe--cCC---ChhhHHH-HHHHHHHcCCCeEEEeCCC-----ChHHHHHHHHHhCCc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVV--PDV---PLEETES-LQKEAMKNKIELVLFTTPT-----TPTDRMKAIVEASEG 217 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGvii--pDl---p~ee~~~-~~~~~~~~gi~~I~lisp~-----t~~eri~~i~~~a~g 217 (311)
+... ..-+.++.++++|+|++++ |.. ..++..+ |...+...++.++++=.|. .+.+-++++++ -..
T Consensus 80 ~~~~--~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~-~p~ 156 (292)
T PRK03170 80 NSTA--EAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLAE-HPN 156 (292)
T ss_pred chHH--HHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHHc-CCC
Confidence 2211 1235677889999999988 221 1244544 4555666678777664453 23466666643 233
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
++.+=.. +| ++ ..+.++++..+-.+.+-.|-. +.+......|+||.+.|.+
T Consensus 157 v~giK~s---~~-------d~-~~~~~~~~~~~~~~~v~~G~d--~~~~~~l~~G~~G~is~~~ 207 (292)
T PRK03170 157 IVGIKEA---TG-------DL-ERVSELIELVPDDFAVYSGDD--ALALPFLALGGVGVISVAA 207 (292)
T ss_pred EEEEEEC---CC-------CH-HHHHHHHHhCCCCeEEEECCh--HhHHHHHHcCCCEEEEhHH
Confidence 4433110 11 12 234444333322344444432 3455666799999998855
No 360
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=97.02 E-value=0.17 Score=48.19 Aligned_cols=218 Identities=12% Similarity=0.130 Sum_probs=133.7
Q ss_pred CccEEE-EEeCCCCChhhH-HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCC
Q 021527 62 KVALIP-YITAGDPDLSTT-AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMS 139 (311)
Q Consensus 62 ~~~li~-yi~~G~P~~~~~-~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~ 139 (311)
++.+-. +..|-..+.... .+.++.|.+.+.|.+-+- +.+|+-.. ....+++..++++..
T Consensus 22 ~~~vS~E~~PPk~~~~~~~l~~~~~~l~~~~p~fvsVT------~~~~~~~~-------------~r~~~~a~~i~~~~g 82 (296)
T PRK09432 22 QINVSFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVT------YGANSGER-------------DRTHSIIKGIKKRTG 82 (296)
T ss_pred CcEEEEEEeCcCCchHHHHHHHHHHHHHhcCCCEEEEe------cCCCCcHH-------------HHHHHHHHHHHHHhC
Confidence 443433 556777776544 488899999999977663 33443211 223446667766666
Q ss_pred CcEEEE-ecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChh------hHHHHHHHHHHcCCCeE-EEe----CCCCh-
Q 021527 140 CPIALF-TYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLE------ETESLQKEAMKNKIELV-LFT----TPTTP- 204 (311)
Q Consensus 140 iPiilm-~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~e------e~~~~~~~~~~~gi~~I-~li----sp~t~- 204 (311)
++.+.- +..+ .....+...+..+.+.|++.+++ .|-|.. ...++.+.+++.+.-.+ .-. .|..+
T Consensus 83 ~~~i~Hltcr~-~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~~~i~va~yPeghp~~~~ 161 (296)
T PRK09432 83 LEAAPHLTCID-ATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVADFDISVAAYPEVHPEAKS 161 (296)
T ss_pred CCeeeecccCC-CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhCCCccceeeCCCCCCCCCC
Confidence 665443 3333 23335567788899999999888 464421 13356666666533222 112 23332
Q ss_pred -HHHHHHHH-HhCCceEEEEecCCccCCCCCC-CchHHHHHHHHhhc-CCCcEEEee-CCCCHHHHHHHHHcCCcEEEEh
Q 021527 205 -TDRMKAIV-EASEGFVYLVSSIGVTGARASI-SGHVQTLLREIKES-STKPVAVGF-GISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 205 -~eri~~i~-~~a~gfiY~vs~~G~TG~~~~~-~~~~~~~l~~vk~~-~~~Pv~vGf-GIst~e~v~~v~~~GADGvIVG 279 (311)
+..++.+. +...|..|++|-. -+ +..+.++++++++. .++||++|. ++.+..++..+.+ .-||-|-
T Consensus 162 ~~~dl~~Lk~K~~aGA~~~iTQ~-------~Fd~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~--~~Gv~vP 232 (296)
T PRK09432 162 AQADLINLKRKVDAGANRAITQF-------FFDVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFAD--MTNVRIP 232 (296)
T ss_pred HHHHHHHHHHHHHcCCCeeeccc-------ccchHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHH--ccCCCCC
Confidence 22222222 2235555665422 22 34577899999875 589999995 7899999999864 4799999
Q ss_pred hHhhchhhhcCCc-h----hHHHHHHHHHHHHHh
Q 021527 280 SAMVKLLGEAQSP-E----EGLKELEKFAKSLKS 308 (311)
Q Consensus 280 Saiv~~~~~~~~~-~----~~~~~~~~~~~~l~~ 308 (311)
..+.+.++...+. + .+++...+++++|.+
T Consensus 233 ~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 233 AWMAKMFDGLDDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999875432 2 456677788888765
No 361
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.01 E-value=0.0031 Score=57.54 Aligned_cols=75 Identities=23% Similarity=0.381 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHH--cCCcEEEEhh
Q 021527 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG--WGADGVIVGS 280 (311)
Q Consensus 203 t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~--~GADGvIVGS 280 (311)
.|.+..+.+.+..-..+|++...|..|. +...+.++++.+. .|+.+|+||+|.|+++++.. .|||=||+||
T Consensus 37 dP~~~a~~~~~~g~~~l~ivDLd~~~~~-----~~n~~~i~~i~~~--~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT 109 (221)
T TIGR00734 37 SPDDAAKVIEEIGARFIYIADLDRIVGL-----GDNFSLLSKLSKR--VELIADCGVRSPEDLETLPFTLEFASRVVVAT 109 (221)
T ss_pred CHHHHHHHHHHcCCCEEEEEEcccccCC-----cchHHHHHHHHhh--CcEEEcCccCCHHHHHHHHhhhccceEEeecC
Confidence 4556666666544556899988774332 1224678888776 49999999999999999954 2599999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
..++
T Consensus 110 ~a~~ 113 (221)
T TIGR00734 110 ETLD 113 (221)
T ss_pred hhhC
Confidence 8876
No 362
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=96.97 E-value=0.12 Score=48.61 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEE----ecCcchh
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALF----TYYNPIL 152 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm----~Y~n~i~ 152 (311)
-..++++...++|+|+|.+..|.+| + +++.+.++..|+.- .+-+.++ +.+++-+
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~~~-------~--------------~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~ 150 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDALND-------V--------------RNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEY 150 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecCCh-------H--------------HHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHH
Confidence 4567888899999999999988877 1 23344555555432 1112222 1122111
Q ss_pred ccCHHHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCc
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGV 227 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~ 227 (311)
+.++++.+.++|+|.+.+.| +.+++..++...++++ ++.+-+-...+.--.-...++....|.-++-+..+.
T Consensus 151 ---~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~G 227 (275)
T cd07937 151 ---YVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISP 227 (275)
T ss_pred ---HHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEeccc
Confidence 24566778999999999998 5677888877777653 433333333333223333344445688777433333
Q ss_pred cCCCCCCCchHHHHHHHHhh
Q 021527 228 TGARASISGHVQTLLREIKE 247 (311)
Q Consensus 228 TG~~~~~~~~~~~~l~~vk~ 247 (311)
-|.+.+ +..+++++..++.
T Consensus 228 lG~~aG-N~~~E~l~~~L~~ 246 (275)
T cd07937 228 LSGGTS-QPSTESMVAALRG 246 (275)
T ss_pred ccCCcC-ChhHHHHHHHHHc
Confidence 455544 3345666666654
No 363
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.95 E-value=0.014 Score=59.67 Aligned_cols=127 Identities=16% Similarity=0.154 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCcEEEecCCChhh---HHHHHHHHHH-cCCCeEEEeC-CCChHHHHHHHHHhCCceEEEEecCC---ccC
Q 021527 158 NFMSTVRDIGIRGLVVPDVPLEE---TESLQKEAMK-NKIELVLFTT-PTTPTDRMKAIVEASEGFVYLVSSIG---VTG 229 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDlp~ee---~~~~~~~~~~-~gi~~I~lis-p~t~~eri~~i~~~a~gfiY~vs~~G---~TG 229 (311)
+-++.+.++|+|.+.+. ..... ..+..+.+++ ++.+...... -.| .+..+...+..-.++.+.-.-| +|-
T Consensus 245 ~ra~~Lv~aGvd~i~vd-~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t-~e~a~~li~aGAd~I~vg~g~Gs~c~tr 322 (502)
T PRK07107 245 ERVPALVEAGADVLCID-SSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVD-REGFRYLAEAGADFVKVGIGGGSICITR 322 (502)
T ss_pred HHHHHHHHhCCCeEeec-CcccccHHHHHHHHHHHHhCCCCceEEeccccC-HHHHHHHHHcCCCEEEECCCCCcCcccc
Confidence 34556788999998765 43332 2344444444 3422222232 334 3444445454445555511111 222
Q ss_pred CCCCCCchHHHHHHHHhhc-------CC--CcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 230 ARASISGHVQTLLREIKES-------ST--KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~~-------~~--~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
...+....-..-+.++.+. .+ +||++.+||++.-|+.+.+.+|||.|-+|+.|.-.-
T Consensus 323 ~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~ 388 (502)
T PRK07107 323 EQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFD 388 (502)
T ss_pred cccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccc
Confidence 2233322112223333331 23 899999999999999999999999999999997644
No 364
>PLN02389 biotin synthase
Probab=96.94 E-value=0.22 Score=49.17 Aligned_cols=189 Identities=15% Similarity=0.160 Sum_probs=107.0
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..++.++.+.+.|+.-+-++.-+.+..-. | ...+.+.++++.+++ ..+++.+ - +..
T Consensus 117 s~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e-~-------------~~~e~i~eiir~ik~-~~l~i~~--s-~G~--- 175 (379)
T PLN02389 117 SKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGR-K-------------TNFNQILEYVKEIRG-MGMEVCC--T-LGM--- 175 (379)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecccCCCCC-h-------------hHHHHHHHHHHHHhc-CCcEEEE--C-CCC---
Confidence 34678888998889999998886433221110 0 123567788888874 4444332 1 111
Q ss_pred CHHHHHHHHHHcCCcEEEec-C------------CChhhHHHHHHHHHHcCCCeEE--Ee-CCCChHHHHHHHHHh---C
Q 021527 155 GVDNFMSTVRDIGIRGLVVP-D------------VPLEETESLQKEAMKNKIELVL--FT-TPTTPTDRMKAIVEA---S 215 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviip-D------------lp~ee~~~~~~~~~~~gi~~I~--li-sp~t~~eri~~i~~~---a 215 (311)
=.++.++.++++|+|.+.+. | -.+++..+..+.+++.|++.-. ++ -..+.++|+..+... .
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~ 255 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLP 255 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcc
Confidence 12678899999999987551 1 1234556677888999996522 11 245666765444332 1
Q ss_pred --CceEEEEecCCccCCCC--CCCchH---HHHHHHHhhcC---CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH-hhc
Q 021527 216 --EGFVYLVSSIGVTGARA--SISGHV---QTLLREIKESS---TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA-MVK 284 (311)
Q Consensus 216 --~gfiY~vs~~G~TG~~~--~~~~~~---~~~l~~vk~~~---~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa-iv~ 284 (311)
...+.+.......|+.- .-+.+. ...+.-.|-.. .+++..|.-...++.....+.+|||++++|-. +.-
T Consensus 256 ~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~Ltt 335 (379)
T PLN02389 256 EHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTT 335 (379)
T ss_pred cCCcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCccccccccccccChhHHHHHHHhCCCEEEECCcccCC
Confidence 12233222222333321 111223 33344444444 35666666344556668888999999999998 544
No 365
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=96.94 E-value=0.15 Score=48.26 Aligned_cols=176 Identities=14% Similarity=0.130 Sum_probs=103.4
Q ss_pred CCCChhhHHHHHHHHHH-CCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecC
Q 021527 72 GDPDLSTTAEALKLLDS-CGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYY 148 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~-~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~ 148 (311)
|.-|.+.+.+.++.+.+ .|++.|-++---.+ + .-.+.++-.++++.+.+. -++||+.-.-.
T Consensus 19 g~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE----~------------~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~ 82 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGE----A------------FLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS 82 (293)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCEEEECCCccc----c------------ccCCHHHHHHHHHHHHHHhCCCCCEEecCCC
Confidence 55667899999999999 99999988621111 1 114555666666666553 35787775433
Q ss_pred cchhccCHHHHHHHHHHcCCcEEEec--C---CChhhHHH-HHHHHHHcCCCeEEEeCCC-----ChHHHHHHHHHhCCc
Q 021527 149 NPILKRGVDNFMSTVRDIGIRGLVVP--D---VPLEETES-LQKEAMKNKIELVLFTTPT-----TPTDRMKAIVEASEG 217 (311)
Q Consensus 149 n~i~~~g~~~fi~~~~~aGadGviip--D---lp~ee~~~-~~~~~~~~gi~~I~lisp~-----t~~eri~~i~~~a~g 217 (311)
+... ..-+..+.+.++|+|++++. - ...++..+ |...+...++.++++=.|. .+.+-+.++++ -..
T Consensus 83 ~~t~--~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~-~pn 159 (293)
T PRK04147 83 VNTA--EAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT-LPK 159 (293)
T ss_pred CCHH--HHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc-CCC
Confidence 3221 12346677899999999884 1 12245554 4555666778776664442 24566777764 345
Q ss_pred eEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 218 FVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 218 fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
++++=.. +| +. ..+.++++.. +.-++.|.. +.+...+..|+||++.|++
T Consensus 160 vvgiK~s---~~-------d~-~~~~~~~~~~~~~~v~~G~d----~~~~~~l~~G~~G~is~~~ 209 (293)
T PRK04147 160 VIGVKQT---AG-------DL-YQLERIRKAFPDKLIYNGFD----EMFASGLLAGADGAIGSTY 209 (293)
T ss_pred EEEEEeC---CC-------CH-HHHHHHHHhCCCCEEEEeeh----HHHHHHHHcCCCEEEechh
Confidence 5544211 11 12 2244443332 444555442 4556666799999998764
No 366
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.91 E-value=0.25 Score=48.32 Aligned_cols=210 Identities=14% Similarity=0.201 Sum_probs=121.3
Q ss_pred EEeCCCCC----hhhHHHHHHHHHHCCCCEEEEcC--CCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc
Q 021527 68 YITAGDPD----LSTTAEALKLLDSCGSDIIELGV--PYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP 141 (311)
Q Consensus 68 yi~~G~P~----~~~~~e~~~~L~~~GaD~IElG~--PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP 141 (311)
++.+| |. .+...+.++.+.+.|+.++-=|. |=+.|+.- .|.. ++.+++++++++++++|
T Consensus 103 ~vIAG-PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf-------------~G~g-~~gl~~L~~~~~e~Gl~ 167 (352)
T PRK13396 103 VVVAG-PCSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAF-------------QGHG-ESALELLAAAREATGLG 167 (352)
T ss_pred EEEEe-CCcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCccc-------------CCch-HHHHHHHHHHHHHcCCc
Confidence 56777 53 36899999999999999876432 22344332 2344 67789999999999999
Q ss_pred EEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCC--hHHH---HHHHHHhCC
Q 021527 142 IALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTT--PTDR---MKAIVEASE 216 (311)
Q Consensus 142 iilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t--~~er---i~~i~~~a~ 216 (311)
++--.+ + .+-++.+.+. +|.+-|+---... ..+.+++.+.|. +|.+-...+ .+|. ++.+.+...
T Consensus 168 ~~tev~-d-------~~~v~~~~~~-~d~lqIga~~~~n-~~LL~~va~t~k-PVllk~G~~~t~ee~~~A~e~i~~~Gn 236 (352)
T PRK13396 168 IITEVM-D-------AADLEKIAEV-ADVIQVGARNMQN-FSLLKKVGAQDK-PVLLKRGMAATIDEWLMAAEYILAAGN 236 (352)
T ss_pred EEEeeC-C-------HHHHHHHHhh-CCeEEECcccccC-HHHHHHHHccCC-eEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 876432 1 3455556565 8998888443333 335566666674 555554443 3332 222322222
Q ss_pred -ceEEEEecCCc---c-CCCCCCCchHHHHHHHHhhcCCCcEEEe----eCC--CCHHHHHHHHHcCCcEEEEhhHhhc-
Q 021527 217 -GFVYLVSSIGV---T-GARASISGHVQTLLREIKESSTKPVAVG----FGI--SKPEHVQQVAGWGADGVIVGSAMVK- 284 (311)
Q Consensus 217 -gfiY~vs~~G~---T-G~~~~~~~~~~~~l~~vk~~~~~Pv~vG----fGI--st~e~v~~v~~~GADGvIVGSaiv~- 284 (311)
.++.|-. |+ + +.. ....+ ...+..+|+.+++||++. .|- ..+........+||||++|=..+.-
T Consensus 237 ~~viL~er--G~rtf~s~y~-~~~~d-l~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~pd 312 (352)
T PRK13396 237 PNVILCER--GIRTFDRQYT-RNTLD-LSVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPA 312 (352)
T ss_pred CeEEEEec--CCccCcCCCC-CCCcC-HHHHHHHHHhhCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCCcc
Confidence 3555532 22 1 221 11222 345778888889999773 243 2345566777899999998654432
Q ss_pred -hhhhcCCchhHHHHHHHHHHHHHh
Q 021527 285 -LLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 285 -~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
.+.++. ..-..+++++++++++.
T Consensus 313 ~AlsD~~-qsl~p~~~~~l~~~i~~ 336 (352)
T PRK13396 313 KALSDGP-QSLTPDRFDRLMQELAV 336 (352)
T ss_pred cCCChhh-hcCCHHHHHHHHHHHHH
Confidence 222111 01114566666666653
No 367
>PTZ00333 triosephosphate isomerase; Provisional
Probab=96.89 E-value=0.016 Score=54.11 Aligned_cols=122 Identities=21% Similarity=0.321 Sum_probs=73.8
Q ss_pred HHHHHHHcCCcEEEecC----CCh----hhHHHHHHHHHHcCCCeEEEeCCCChHHH------------HHHHHHhCCc-
Q 021527 159 FMSTVRDIGIRGLVVPD----VPL----EETESLQKEAMKNKIELVLFTTPTTPTDR------------MKAIVEASEG- 217 (311)
Q Consensus 159 fi~~~~~aGadGviipD----lp~----ee~~~~~~~~~~~gi~~I~lisp~t~~er------------i~~i~~~a~g- 217 (311)
-...+++.|++.+++.. ..+ +...+-...+.++|+.+|+-+.-+. ++| ++...+.-+.
T Consensus 81 S~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~-~~~~~~~~~~~v~~Ql~~~l~~v~~~ 159 (255)
T PTZ00333 81 SAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETL-EEREAGQTSDVLSKQLEAIVKKVSDE 159 (255)
T ss_pred CHHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCH-HHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 45678999999999963 222 2233445567889998887766432 221 2222211111
Q ss_pred -----eEEEEe--cCCccCCCCCCCchHHHHHHHHhhc----------CCCcEEEeeCCCCHHHHHHH-HHcCCcEEEEh
Q 021527 218 -----FVYLVS--SIGVTGARASISGHVQTLLREIKES----------STKPVAVGFGISKPEHVQQV-AGWGADGVIVG 279 (311)
Q Consensus 218 -----fiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~----------~~~Pv~vGfGIst~e~v~~v-~~~GADGvIVG 279 (311)
+|-|.+ ..| ||.. ..++...+.++.+|+. .+++|++|++|+ ++++.++ ...+.||+-||
T Consensus 160 ~~~~iiIAYEPvWAIG-tg~~-a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~-~~N~~~l~~~~~vDG~LvG 236 (255)
T PTZ00333 160 AWDNIVIAYEPVWAIG-TGKV-ATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVN-EKNCKELIKQPDIDGFLVG 236 (255)
T ss_pred HcceEEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCC-HHHHHHHhcCCCCCEEEEe
Confidence 233322 223 5543 2345566666667662 148999999998 5777665 45678999999
Q ss_pred hHhhc
Q 021527 280 SAMVK 284 (311)
Q Consensus 280 Saiv~ 284 (311)
++-.+
T Consensus 237 ~asl~ 241 (255)
T PTZ00333 237 GASLK 241 (255)
T ss_pred hHhhh
Confidence 98875
No 368
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.88 E-value=0.084 Score=49.60 Aligned_cols=132 Identities=14% Similarity=0.096 Sum_probs=76.0
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcC-C--------cEEEecCCChh---hHHHHHHHHHHcCC-CeEEEeCCCChHH
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIG-I--------RGLVVPDVPLE---ETESLQKEAMKNKI-ELVLFTTPTTPTD 206 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aG-a--------dGviipDlp~e---e~~~~~~~~~~~gi-~~I~lisp~t~~e 206 (311)
.++.+++--.+. .|...|.+.+..+| . |.+++-|=-++ ....-.+.+++..- +...-+++.+.++
T Consensus 116 ~~~~i~~TRKt~--Pg~r~~~k~Av~~GGg~~hR~~L~d~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~ee 193 (269)
T cd01568 116 TKARIADTRKTT--PGLRLLEKYAVRAGGGDNHRLGLSDAVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEE 193 (269)
T ss_pred CCEEEeecCCCC--hhhHHHHHHHHHhCCCccccCCCcceeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHH
Confidence 456776533322 35566777666554 2 34554331111 12223344555432 4556678888755
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
-.+.+ . .|..|+.- +. -.+..+.+.++.+++..++|+++-+||+ ++++.++.+.|+|++.+|+.+..
T Consensus 194 a~~A~-~--~gaD~I~l--d~-----~~~e~l~~~v~~i~~~~~i~i~asGGIt-~~ni~~~a~~Gad~Isvgal~~s 260 (269)
T cd01568 194 AEEAL-E--AGADIIML--DN-----MSPEELKEAVKLLKGLPRVLLEASGGIT-LENIRAYAETGVDVISTGALTHS 260 (269)
T ss_pred HHHHH-H--cCCCEEEE--CC-----CCHHHHHHHHHHhccCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEcHHHcC
Confidence 44332 2 46666632 11 1123455555555544468999999996 89999999999999999765543
No 369
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=96.88 E-value=0.25 Score=46.08 Aligned_cols=174 Identities=13% Similarity=0.214 Sum_probs=108.2
Q ss_pred HHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCCh------------hhHHHHHHHHHHc
Q 021527 126 AILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPL------------EETESLQKEAMKN 191 (311)
Q Consensus 126 ~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~------------ee~~~~~~~~~~~ 191 (311)
........++++.++|.+.---........++..+..+.+.|++.+++ .|.|. ..+.++.+.++..
T Consensus 45 ~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~ 124 (274)
T cd00537 45 MTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKE 124 (274)
T ss_pred hHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHh
Confidence 345577777777666654432111122345677888899999998877 35442 2367777777764
Q ss_pred ---CCCeEE----EeCCCCh--HHHHHHHH-HhCCceEEEEecCCccCCCCCCC-chHHHHHHHHhhc-CCCcEEEee-C
Q 021527 192 ---KIELVL----FTTPTTP--TDRMKAIV-EASEGFVYLVSSIGVTGARASIS-GHVQTLLREIKES-STKPVAVGF-G 258 (311)
Q Consensus 192 ---gi~~I~----lisp~t~--~eri~~i~-~~a~gfiY~vs~~G~TG~~~~~~-~~~~~~l~~vk~~-~~~Pv~vGf-G 258 (311)
++..-. -..|... +..++.+. +...|..|++|-. -.+ ..+.++++++|+. .++||++|. +
T Consensus 125 ~~~~~~igva~yPe~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~-------~fd~~~~~~~~~~~~~~gi~vPIi~GI~p 197 (274)
T cd00537 125 NGGGFSIGVAAYPEGHPEAPSLEEDIKRLKRKVDAGADFIITQL-------FFDNDAFLRFVDRCRAAGITVPIIPGIMP 197 (274)
T ss_pred cCCCCccccccCCCcCCCCCCHHHHHHHHHHHHHCCCCEEeecc-------cccHHHHHHHHHHHHHcCCCCCEEeeccc
Confidence 222111 1234432 22232222 2345777776533 233 4578889999886 479999996 5
Q ss_pred CCCHHHHHHHHHcCCcEEEEhhHhhchhhhcC-Cc----hhHHHHHHHHHHHHHh
Q 021527 259 ISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQ-SP----EEGLKELEKFAKSLKS 308 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvIVGSaiv~~~~~~~-~~----~~~~~~~~~~~~~l~~ 308 (311)
+.+..++..+.++ . ||-|-..+.+.++... +. +.+.+-+.++++++++
T Consensus 198 ~~s~~~l~~~~~~-~-Gv~vP~~~~~~l~~~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 198 LTSYKQAKRFAKL-C-GVEIPDWLLERLEKLKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred cCCHHHHHHHHHh-h-CCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999888 6 9999999999986321 11 2445556666766655
No 370
>PRK06852 aldolase; Validated
Probab=96.87 E-value=0.29 Score=46.90 Aligned_cols=177 Identities=15% Similarity=0.142 Sum_probs=100.2
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-cCCCcEEEEecCcc-h
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-QMSCPIALFTYYNP-I 151 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~-~~~iPiilm~Y~n~-i 151 (311)
|.++...+.++.+.++|+|.+-+- -| +++.... ..++|+++-....+ +
T Consensus 56 ~gl~dp~~~i~~~~~~g~dav~~~--------~G----------------------~l~~~~~~~~~~~lIlkl~~~t~l 105 (304)
T PRK06852 56 KDDADPEHLFRIASKAKIGVFATQ--------LG----------------------LIARYGMDYPDVPYLVKLNSKTNL 105 (304)
T ss_pred cccCCHHHHHHHHHhcCCCEEEeC--------HH----------------------HHHhhccccCCCcEEEEECCCCCc
Confidence 355667778888999999999984 12 4444332 24688777632210 1
Q ss_pred hc------c-CHHHHHHHHHHcC------CcEEEec---CCC-----hhhHHHHHHHHHHcCCCeEEEeCCCCh------
Q 021527 152 LK------R-GVDNFMSTVRDIG------IRGLVVP---DVP-----LEETESLQKEAMKNKIELVLFTTPTTP------ 204 (311)
Q Consensus 152 ~~------~-g~~~fi~~~~~aG------adGviip---Dlp-----~ee~~~~~~~~~~~gi~~I~lisp~t~------ 204 (311)
+. + -.---++++.+.| +|+|-+. .-. +++..++.++|+++|+.++..+.|.-+
T Consensus 106 ~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~ 185 (304)
T PRK06852 106 VKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEK 185 (304)
T ss_pred CCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCc
Confidence 10 0 1112356788877 8888773 211 134566788999999998876544332
Q ss_pred -HHHHHHHHHhC--CceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCC-H----HHHHHHHH-cCCc
Q 021527 205 -TDRMKAIVEAS--EGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISK-P----EHVQQVAG-WGAD 274 (311)
Q Consensus 205 -~eri~~i~~~a--~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst-~----e~v~~v~~-~GAD 274 (311)
.+.+.-.++.+ -|...+=. -.|+.+...+ .+.++++-+.+ .+||++-+|=++ . +.++...+ .||.
T Consensus 186 ~~~~ia~aaRiaaELGADIVKv--~y~~~~~~g~---~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~ 260 (304)
T PRK06852 186 DPHLIAGAAGVAACLGADFVKV--NYPKKEGANP---AELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGAS 260 (304)
T ss_pred cHHHHHHHHHHHHHHcCCEEEe--cCCCcCCCCC---HHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 12332222221 23322211 1232211111 24466666667 799888777763 2 24555556 8999
Q ss_pred EEEEhhHhhch
Q 021527 275 GVIVGSAMVKL 285 (311)
Q Consensus 275 GvIVGSaiv~~ 285 (311)
|+++|=-+...
T Consensus 261 Gv~~GRNIfQ~ 271 (304)
T PRK06852 261 GNATGRNIHQK 271 (304)
T ss_pred eeeechhhhcC
Confidence 99999766653
No 371
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=96.84 E-value=0.083 Score=51.40 Aligned_cols=178 Identities=17% Similarity=0.199 Sum_probs=103.7
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cc-CCCcEEEEecCcch
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVV-PQ-MSCPIALFTYYNPI 151 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir-~~-~~iPiilm~Y~n~i 151 (311)
|.++.....++.+.++|+|.+-+- -| +++... .. .++|+++-...++-
T Consensus 88 ~gl~dp~~~i~~a~~~g~dAv~~~--------~G----------------------~l~~~~~~~~~~iplIlkln~~t~ 137 (348)
T PRK09250 88 PLYFDPENIVKLAIEAGCNAVAST--------LG----------------------VLEAVARKYAHKIPFILKLNHNEL 137 (348)
T ss_pred CcccCHHHHHHHHHhcCCCEEEeC--------HH----------------------HHHhccccccCCCCEEEEeCCCCC
Confidence 566677788889999999999884 12 444422 22 36887776422211
Q ss_pred h------ccCHHHHHHHHHHcCCcEEEec---CCC-----hhhHHHHHHHHHHcCCCeEEEeCCCCh-----------HH
Q 021527 152 L------KRGVDNFMSTVRDIGIRGLVVP---DVP-----LEETESLQKEAMKNKIELVLFTTPTTP-----------TD 206 (311)
Q Consensus 152 ~------~~g~~~fi~~~~~aGadGviip---Dlp-----~ee~~~~~~~~~~~gi~~I~lisp~t~-----------~e 206 (311)
+ ..-.---++++.+.|+|+|-+. .-. +++..++.++|+++|+.++..+.|.-+ .+
T Consensus 138 l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d 217 (348)
T PRK09250 138 LSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAAD 217 (348)
T ss_pred CCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHH
Confidence 1 0011124678999999998773 211 234566788999999998876543321 23
Q ss_pred HHHHHHH----hCCceEEEEecCCccCCCCC----------------C-CchHHHHHHHHhhcC---CCcEEEeeCCCC-
Q 021527 207 RMKAIVE----ASEGFVYLVSSIGVTGARAS----------------I-SGHVQTLLREIKESS---TKPVAVGFGISK- 261 (311)
Q Consensus 207 ri~~i~~----~a~gfiY~vs~~G~TG~~~~----------------~-~~~~~~~l~~vk~~~---~~Pv~vGfGIst- 261 (311)
.+.-.+. +...+|= +. .||.... . .....+.++.+-+.+ .+||++.+|=++
T Consensus 218 ~Ia~AaRiaaELGADIVK-v~---yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~ 293 (348)
T PRK09250 218 LTGQANHLAATIGADIIK-QK---LPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKG 293 (348)
T ss_pred HHHHHHHHHHHHcCCEEE-ec---CCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCC
Confidence 3322222 1223331 21 1221111 1 112345566665655 689888888763
Q ss_pred H----HHHHHH---HHcCCcEEEEhhHhhch
Q 021527 262 P----EHVQQV---AGWGADGVIVGSAMVKL 285 (311)
Q Consensus 262 ~----e~v~~v---~~~GADGvIVGSaiv~~ 285 (311)
. +.+..+ .+.||.|+++|=-+...
T Consensus 294 ~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~ 324 (348)
T PRK09250 294 EDDLLDAVRTAVINKRAGGMGLIIGRKAFQR 324 (348)
T ss_pred HHHHHHHHHHHHHhhhcCCcchhhchhhhcC
Confidence 2 346677 78899999999766653
No 372
>PLN02429 triosephosphate isomerase
Probab=96.83 E-value=0.012 Score=56.45 Aligned_cols=122 Identities=19% Similarity=0.300 Sum_probs=73.4
Q ss_pred HHHHHHHcCCcEEEecC----CChhhHHHHHHH----HHHcCCCeEEEeCCCChHHH------------HHHHHHhCCc-
Q 021527 159 FMSTVRDIGIRGLVVPD----VPLEETESLQKE----AMKNKIELVLFTTPTTPTDR------------MKAIVEASEG- 217 (311)
Q Consensus 159 fi~~~~~aGadGviipD----lp~ee~~~~~~~----~~~~gi~~I~lisp~t~~er------------i~~i~~~a~g- 217 (311)
-.+.+++.|++.+|+.. ..+.|..+.... +.++|+.+|+-+..+ .++| ++.+.+.-..
T Consensus 139 Sa~mLkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~GL~pIvCIGE~-l~ere~g~t~~vi~~Ql~~~l~~v~~~ 217 (315)
T PLN02429 139 SVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEK-LEEREAGKTFDVCFAQLKAFADAVPSW 217 (315)
T ss_pred CHHHHHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCcCEEEEEcCCC-HHHHhCCCHHHHHHHHHHHHHccCCcc
Confidence 45678999999999963 223455555555 889999988777643 2221 2222221112
Q ss_pred ---eEEEEe--cCCccCCCCCCCchHHHHHHHHhhc----------CCCcEEEeeCCCCHHHHHHHH-HcCCcEEEEhhH
Q 021527 218 ---FVYLVS--SIGVTGARASISGHVQTLLREIKES----------STKPVAVGFGISKPEHVQQVA-GWGADGVIVGSA 281 (311)
Q Consensus 218 ---fiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~----------~~~Pv~vGfGIst~e~v~~v~-~~GADGvIVGSa 281 (311)
+|-|.+ ..| ||.. ..+.+..+..+.+|+. .+++|++|++|+ ++++.++. ..+.||+-||++
T Consensus 218 ~~ivIAYEPvWAIG-TGk~-as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV~-~~N~~el~~~~diDG~LVGgA 294 (315)
T PLN02429 218 DNIVVAYEPVWAIG-TGKV-ASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVN-GGNSAELAKEEDIDGFLVGGA 294 (315)
T ss_pred cceEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCccC-HHHHHHHhcCCCCCEEEeecc
Confidence 232222 223 4532 2233444444444421 257999999998 56666655 667999999999
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
-.+
T Consensus 295 SL~ 297 (315)
T PLN02429 295 SLK 297 (315)
T ss_pred eec
Confidence 885
No 373
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=96.82 E-value=0.15 Score=48.32 Aligned_cols=178 Identities=10% Similarity=0.101 Sum_probs=103.5
Q ss_pred eCCCCChhhHHHHHHHHHHCC-CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEe
Q 021527 70 TAGDPDLSTTAEALKLLDSCG-SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFT 146 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~G-aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~ 146 (311)
--|..|.+.+.+.++.+.+.| +|.|-++--..+ + .-.+.++-.++++.+.+. -++||+.-.
T Consensus 14 ~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE----~------------~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv 77 (290)
T TIGR00683 14 EDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGE----N------------FMLSTEEKKEIFRIAKDEAKDQIALIAQV 77 (290)
T ss_pred CCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccc----c------------ccCCHHHHHHHHHHHHHHhCCCCcEEEec
Confidence 346677889999999999999 999988511111 1 114555666666666544 358888765
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEecC-----CChhhHHHHHHH-HHHc-CCCeEEEeCCC-----ChHHHHHHHHHh
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVVPD-----VPLEETESLQKE-AMKN-KIELVLFTTPT-----TPTDRMKAIVEA 214 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGviipD-----lp~ee~~~~~~~-~~~~-gi~~I~lisp~-----t~~eri~~i~~~ 214 (311)
..+... ..-+..+.++++|+||+++.- ...++...+... +... ++.++++=.|. .+.+-+.++++.
T Consensus 78 ~~~~t~--~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~ 155 (290)
T TIGR00683 78 GSVNLK--EAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYKN 155 (290)
T ss_pred CCCCHH--HHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhcC
Confidence 433221 123566778999999998831 112555555444 4555 67777654442 234566666542
Q ss_pred CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 215 SEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 215 a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
..++.+=. .+| +. +.+.+++... +.-|+ .|-. +.....+..|+||.+-|++
T Consensus 156 -pnv~giK~---s~~-------d~-~~~~~~~~~~~~~~v~--~G~d--~~~~~~l~~G~~G~i~~~~ 207 (290)
T TIGR00683 156 -PKVLGVKF---TAG-------DF-YLLERLKKAYPNHLIW--AGFD--EMMLPAASLGVDGAIGSTF 207 (290)
T ss_pred -CCEEEEEe---CCC-------CH-HHHHHHHHhCCCCEEE--ECch--HHHHHHHHCCCCEEEecHH
Confidence 44444311 111 11 2345554433 44443 3332 4566666789999997755
No 374
>PLN02540 methylenetetrahydrofolate reductase
Probab=96.81 E-value=0.3 Score=50.61 Aligned_cols=204 Identities=13% Similarity=0.213 Sum_probs=129.2
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE-ecCcchhcc
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF-TYYNPILKR 154 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm-~Y~n~i~~~ 154 (311)
.+.+.+-++.|.+.|.+.|-+- + | +.|.+-+..+++++.++++..++.+.- +..| .-..
T Consensus 14 ~~nL~~~~~rl~~~~P~FisVT--~------g-----------AgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd-~n~~ 73 (565)
T PLN02540 14 VDNLFERMDRMVAHGPLFCDIT--W------G-----------AGGSTADLTLDIANRMQNMICVETMMHLTCTN-MPVE 73 (565)
T ss_pred HHHHHHHHHHHhccCCCEEEeC--C------C-----------CCCCcHHHHHHHHHHHHHhcCCCeeEEeeecC-CCHH
Confidence 4567778888888888888772 1 2 124455667788888888777775543 2222 2233
Q ss_pred CHHHHHHHHHHcCCcEEEe--cCCCh------------hhHHHHHHHHHHc-C-CCeEEEe-----CCC-----------
Q 021527 155 GVDNFMSTVRDIGIRGLVV--PDVPL------------EETESLQKEAMKN-K-IELVLFT-----TPT----------- 202 (311)
Q Consensus 155 g~~~fi~~~~~aGadGvii--pDlp~------------ee~~~~~~~~~~~-g-i~~I~li-----sp~----------- 202 (311)
.++..+..+.+.|+.-+++ .|-|. ..+.++.+.+++. | .--|-.. .|.
T Consensus 74 ~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~ 153 (565)
T PLN02540 74 KIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPE 153 (565)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCC
Confidence 5677888899999998876 35442 2256677777764 2 1112111 121
Q ss_pred ChHHHHHHHH-HhCCceEEEEecCCccCCCCCCC-chHHHHHHHHhhc-CCCcEEEee-CCCCHHHHHHHHHcCCcEEEE
Q 021527 203 TPTDRMKAIV-EASEGFVYLVSSIGVTGARASIS-GHVQTLLREIKES-STKPVAVGF-GISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 203 t~~eri~~i~-~~a~gfiY~vs~~G~TG~~~~~~-~~~~~~l~~vk~~-~~~Pv~vGf-GIst~e~v~~v~~~GADGvIV 278 (311)
..+..+..+. +...|..|++|-. -.+ ....++++++|+. .++||+.|. .|.+..++..+.++ -|+-|
T Consensus 154 ~~~~dl~~Lk~KvdAGAdFiITQl-------fFD~d~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l--~Gi~I 224 (565)
T PLN02540 154 AYQKDLAYLKEKVDAGADLIITQL-------FYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGF--CKTKI 224 (565)
T ss_pred ChHHHHHHHHHHHHcCCCEEeecc-------ccCHHHHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhc--cCCcC
Confidence 1111222221 2334666666422 223 3457889999886 479999996 67889999988886 59999
Q ss_pred hhHhhchhhhcCCc-----hhHHHHHHHHHHHHHh
Q 021527 279 GSAMVKLLGEAQSP-----EEGLKELEKFAKSLKS 308 (311)
Q Consensus 279 GSaiv~~~~~~~~~-----~~~~~~~~~~~~~l~~ 308 (311)
-..+.+.++...+. +.+++-..+.+++|++
T Consensus 225 P~~i~~rLe~~kddde~v~~~Gieia~e~~~~L~~ 259 (565)
T PLN02540 225 PAEITAALEPIKDNDEAVKAYGIHLGTEMCKKILA 259 (565)
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999764332 2466777788888765
No 375
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.80 E-value=0.41 Score=45.02 Aligned_cols=204 Identities=19% Similarity=0.217 Sum_probs=114.5
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCC--CCCCCC-ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchh
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVP--YSDPLA-DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPIL 152 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~P--fsDP~a-DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~ 152 (311)
.+.+.+.++.|.+.|+.++-.|.- =+.|+. +|+- ++-++.+++++++.++|+.--.. +
T Consensus 40 ~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g---------------~~gl~~l~~~~~~~Gl~~~te~~-d--- 100 (266)
T PRK13398 40 EEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLG---------------EEGLKILKEVGDKYNLPVVTEVM-D--- 100 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcH---------------HHHHHHHHHHHHHcCCCEEEeeC-C---
Confidence 478999999999999998877721 122221 3321 45577888888889999877332 2
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCC-hHHHH----HHHHHhCC-ceEEEEecCC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTT-PTDRM----KAIVEASE-GFVYLVSSIG 226 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t-~~eri----~~i~~~a~-gfiY~vs~~G 226 (311)
...++.+.+. +|-+-|+--..+.. .+..++.+.|. +|.+-+... +.+.+ +.+..... ..+.|. .|
T Consensus 101 ----~~~~~~l~~~-vd~~kIga~~~~n~-~LL~~~a~~gk-PV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~--rG 171 (266)
T PRK13398 101 ----TRDVEEVADY-ADMLQIGSRNMQNF-ELLKEVGKTKK-PILLKRGMSATLEEWLYAAEYIMSEGNENVVLCE--RG 171 (266)
T ss_pred ----hhhHHHHHHh-CCEEEECcccccCH-HHHHHHhcCCC-cEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEE--CC
Confidence 2334445555 78888874443333 35555667775 455555543 33322 22222222 233333 23
Q ss_pred c-cCCCCCCCchHHHHHHHHhhcCCCcEEEe--eCCCC----HHHHHHHHHcCCcEEEEhhHhhc--hhhhcCCchhHHH
Q 021527 227 V-TGARASISGHVQTLLREIKESSTKPVAVG--FGISK----PEHVQQVAGWGADGVIVGSAMVK--LLGEAQSPEEGLK 297 (311)
Q Consensus 227 ~-TG~~~~~~~~~~~~l~~vk~~~~~Pv~vG--fGIst----~e~v~~v~~~GADGvIVGSaiv~--~~~~~~~~~~~~~ 297 (311)
+ |...-....-....+..+|+.++.||++. -++.. +.........||||++|=+.+.- .+.++. ..-..+
T Consensus 172 ~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~pd~a~~D~~-~sl~p~ 250 (266)
T PRK13398 172 IRTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPEPEKALSDAR-QTLNFE 250 (266)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCCccccCCchh-hcCCHH
Confidence 3 22111111112345777788788998872 23332 55667777899999998766543 221111 011256
Q ss_pred HHHHHHHHHHh
Q 021527 298 ELEKFAKSLKS 308 (311)
Q Consensus 298 ~~~~~~~~l~~ 308 (311)
++++++++++.
T Consensus 251 ~l~~l~~~i~~ 261 (266)
T PRK13398 251 EMKELVDELKP 261 (266)
T ss_pred HHHHHHHHHHH
Confidence 67777777664
No 376
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=96.79 E-value=0.31 Score=45.57 Aligned_cols=203 Identities=15% Similarity=0.209 Sum_probs=113.5
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCC---CCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchh
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPY---SDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPIL 152 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~Pf---sDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~ 152 (311)
.+.+.+.++.|.+.|+... .+..| +.|+. ..|.. ++.++++++++++.++|+.--.+ +
T Consensus 38 ~~~~~~~A~~lk~~~~k~~-r~~~~KpRtsp~s-------------~~g~g-~~gl~~l~~~~~~~Gl~~~t~~~-d--- 98 (260)
T TIGR01361 38 EEQIMETARFVKEAGAKIL-RGGAFKPRTSPYS-------------FQGLG-EEGLKLLRRAADEHGLPVVTEVM-D--- 98 (260)
T ss_pred HHHHHHHHHHHHHHHHHhc-cCceecCCCCCcc-------------ccccH-HHHHHHHHHHHHHhCCCEEEeeC-C---
Confidence 4678888888888877632 33333 23321 11222 56688999999999999877432 1
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCC-hHHHH----HHHHHhCC-ceEEEEecCC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTT-PTDRM----KAIVEASE-GFVYLVSSIG 226 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t-~~eri----~~i~~~a~-gfiY~vs~~G 226 (311)
..-++.+.+. +|.+-|+-...... .+.+.+.+.|. +|.+-+... +.+.+ +.+.+... .++.+. .|
T Consensus 99 ----~~~~~~l~~~-~d~lkI~s~~~~n~-~LL~~~a~~gk-PVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~--rG 169 (260)
T TIGR01361 99 ----PRDVEIVAEY-ADILQIGARNMQNF-ELLKEVGKQGK-PVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCE--RG 169 (260)
T ss_pred ----hhhHHHHHhh-CCEEEECcccccCH-HHHHHHhcCCC-cEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEE--CC
Confidence 2345555566 88888874433333 36666777785 455555544 33332 22222222 344443 24
Q ss_pred ccCC-CC-CCCchHHHHHHHHhhcCCCcEEE----eeCCC--CHHHHHHHHHcCCcEEEEhhHhhchhhhcCCc--hhHH
Q 021527 227 VTGA-RA-SISGHVQTLLREIKESSTKPVAV----GFGIS--KPEHVQQVAGWGADGVIVGSAMVKLLGEAQSP--EEGL 296 (311)
Q Consensus 227 ~TG~-~~-~~~~~~~~~l~~vk~~~~~Pv~v----GfGIs--t~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~--~~~~ 296 (311)
++.. .. ....+ ...+..+|+.++.||++ ..|-+ .+.........||||+++=+.+.---.- .+. .-..
T Consensus 170 ~s~y~~~~~~~~d-l~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d~a~-~D~~~sl~p 247 (260)
T TIGR01361 170 IRTFEKATRNTLD-LSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDPEKAL-SDSKQQLTP 247 (260)
T ss_pred CCCCCCCCcCCcC-HHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCccccC-CcchhcCCH
Confidence 4322 11 11222 34578888878899877 22211 0445556778999999887655431110 111 1126
Q ss_pred HHHHHHHHHHHh
Q 021527 297 KELEKFAKSLKS 308 (311)
Q Consensus 297 ~~~~~~~~~l~~ 308 (311)
++++.++++++.
T Consensus 248 ~~l~~lv~~i~~ 259 (260)
T TIGR01361 248 EEFKRLVKELRA 259 (260)
T ss_pred HHHHHHHHHHhh
Confidence 678888888764
No 377
>PLN02561 triosephosphate isomerase
Probab=96.77 E-value=0.014 Score=54.44 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=69.7
Q ss_pred HHHHHHHcCCcEEEecCC----ChhhH----HHHHHHHHHcCCCeEEEeCCCCh-------HHH----HHHHHHhC----
Q 021527 159 FMSTVRDIGIRGLVVPDV----PLEET----ESLQKEAMKNKIELVLFTTPTTP-------TDR----MKAIVEAS---- 215 (311)
Q Consensus 159 fi~~~~~aGadGviipDl----p~ee~----~~~~~~~~~~gi~~I~lisp~t~-------~er----i~~i~~~a---- 215 (311)
-.+.+++.|++.+++..- -+.|. ..-...+.++|+.+|+-+.-+.. .+- ++...+.-
T Consensus 80 S~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l~~v~~~~ 159 (253)
T PLN02561 80 SAEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWA 159 (253)
T ss_pred CHHHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 456788899999998631 12232 33345677889988877664311 111 22222111
Q ss_pred CceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc----------CCCcEEEeeCCCCHHHHHHH-HHcCCcEEEEhhHh
Q 021527 216 EGFVYLVS--SIGVTGARASISGHVQTLLREIKES----------STKPVAVGFGISKPEHVQQV-AGWGADGVIVGSAM 282 (311)
Q Consensus 216 ~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~----------~~~Pv~vGfGIst~e~v~~v-~~~GADGvIVGSai 282 (311)
.-.|-|.+ ..| ||.. ..+.+..+..+.+|+. .++||+.|++|+ ++++.++ ...|.||+-||++=
T Consensus 160 ~iiIAYEPvWAIG-tG~~-as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGGSV~-~~N~~~l~~~~~iDG~LVG~AS 236 (253)
T PLN02561 160 NVVLAYEPVWAIG-TGKV-ATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGGSVT-GANCKELAAQPDVDGFLVGGAS 236 (253)
T ss_pred ceEEEECCHHHhC-CCCC-CCHHHHHHHHHHHHHHHHHhhcccccccceEEEeCCcC-HHHHHHHhcCCCCCeEEEehHh
Confidence 11232322 223 5543 2233444444445431 158999999998 5776665 46679999999986
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.+
T Consensus 237 L~ 238 (253)
T PLN02561 237 LK 238 (253)
T ss_pred hH
Confidence 65
No 378
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=96.73 E-value=0.0034 Score=57.63 Aligned_cols=47 Identities=32% Similarity=0.510 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCCCcE--EEeeCCCCHHHHHHHHHcCCcEEEEhhHhhch
Q 021527 239 QTLLREIKESSTKPV--AVGFGISKPEHVQQVAGWGADGVIVGSAMVKL 285 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv--~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~ 285 (311)
+++++++++.-.+|| +..+||.||.|+..+.+.|||||.|||.|.+.
T Consensus 195 ~elv~~~~~~grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS 243 (296)
T COG0214 195 YELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS 243 (296)
T ss_pred HHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCC
Confidence 366777777666776 45789999999999999999999999999984
No 379
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=96.70 E-value=0.12 Score=50.17 Aligned_cols=185 Identities=22% Similarity=0.224 Sum_probs=102.9
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE----ec
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF----TY 147 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm----~Y 147 (311)
.++.++.+.+.+......++|.|-+.=-| | +.+......++++++- +|
T Consensus 44 ~~~~l~~~K~lv~~~l~~~asaILld~~y------G----------------------~~a~~~~~~~~GLil~~e~tg~ 95 (340)
T PRK12858 44 SYTDLVDFKLAVSEALTPYASAILLDPEY------G----------------------LPAAKVRDPNCGLLLSYEKTGY 95 (340)
T ss_pred chhhHHHHHHHHHHHHhhCCCEEEEcccc------C----------------------hhhhcccCCCCCeEEEeccccc
Confidence 35577888889999999999999985112 1 1111112245665554 12
Q ss_pred Cc-chhccC---HHHHHHHHHHcCCcEEEe-----cCCCh-------hhHHHHHHHHHHcCCCeEEE--eCCC-------
Q 021527 148 YN-PILKRG---VDNFMSTVRDIGIRGLVV-----PDVPL-------EETESLQKEAMKNKIELVLF--TTPT------- 202 (311)
Q Consensus 148 ~n-~i~~~g---~~~fi~~~~~aGadGvii-----pDlp~-------ee~~~~~~~~~~~gi~~I~l--isp~------- 202 (311)
-. ...+.. ..-.++.+++.|+|+|-+ ||-+. +...++.++|+++|+.++.- +.|.
T Consensus 96 d~t~~gr~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~ 175 (340)
T PRK12858 96 DATAPGRLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKA 175 (340)
T ss_pred ccCCCCCCccccccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCcccccc
Confidence 11 111100 112467899999998877 66552 12567889999999997764 3332
Q ss_pred -----ChHHHHHHHHHh-C---CceEEE-EecCC----ccCCCCC----CCchHHHHHHHHhhcCCCcEEE-eeCCCCHH
Q 021527 203 -----TPTDRMKAIVEA-S---EGFVYL-VSSIG----VTGARAS----ISGHVQTLLREIKESSTKPVAV-GFGISKPE 263 (311)
Q Consensus 203 -----t~~eri~~i~~~-a---~gfiY~-vs~~G----~TG~~~~----~~~~~~~~l~~vk~~~~~Pv~v-GfGIst~e 263 (311)
..++.+...++. + -|...+ +...+ +-|...+ ...+..+.++++.+.+++|+++ |+|++ .+
T Consensus 176 ~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~~-~~ 254 (340)
T PRK12858 176 EEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGVS-PE 254 (340)
T ss_pred ccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCCC-HH
Confidence 112222222221 2 343322 32111 1111000 1122235677777778999666 88885 44
Q ss_pred ----HHHHHHHcCC--cEEEEhhHhhch
Q 021527 264 ----HVQQVAGWGA--DGVIVGSAMVKL 285 (311)
Q Consensus 264 ----~v~~v~~~GA--DGvIVGSaiv~~ 285 (311)
.++...+.|| .||.+|=++-+.
T Consensus 255 ~f~~~l~~A~~aGa~f~Gvl~GRniwq~ 282 (340)
T PRK12858 255 LFRRTLEFACEAGADFSGVLCGRATWQD 282 (340)
T ss_pred HHHHHHHHHHHcCCCccchhhhHHHHhh
Confidence 4555678999 999999666553
No 380
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.49 Score=44.91 Aligned_cols=204 Identities=21% Similarity=0.281 Sum_probs=128.0
Q ss_pred HHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHH
Q 021527 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSM 130 (311)
Q Consensus 51 ~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~ 130 (311)
.+.++..++.+ -+ +|-+- --+++.+.-++++.++..+++|-=. ..|- +....| .+.+..+
T Consensus 7 ~~ll~~Ake~~-yA-vpAfN--~~nlE~~~AileaA~e~~sPvIiq~-------S~g~-------~~y~gg--~~~~~~~ 66 (286)
T COG0191 7 KELLDKAKENG-YA-VPAFN--INNLETLQAILEAAEEEKSPVIIQF-------SEGA-------AKYAGG--ADSLAHM 66 (286)
T ss_pred HHHHHHHHHcC-Cc-eeeee--ecCHHHHHHHHHHHHHhCCCEEEEe-------cccH-------HHHhch--HHHHHHH
Confidence 56666665443 33 33331 3467899999999999999887543 1230 111122 3455678
Q ss_pred HHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE----E--
Q 021527 131 LKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL----F-- 198 (311)
Q Consensus 131 i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~----l-- 198 (311)
++.+.++.++||++-. .+..-.+.+..+.+.|...+.+ ..+|+|| ..++.+.|.+.|+.+=. +
T Consensus 67 v~~~a~~~~vPV~lHl-----DHg~~~~~~~~ai~~GFsSvMiDgS~~~~eENi~~tkevv~~ah~~gvsVEaElG~~GG 141 (286)
T COG0191 67 VKALAEKYGVPVALHL-----DHGASFEDCKQAIRAGFSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVEAELGTLGG 141 (286)
T ss_pred HHHHHHHCCCCEEEEC-----CCCCCHHHHHHHHhcCCceEEecCCcCCHHHHHHHHHHHHHHHHHcCCcEEEEeccccC
Confidence 8888888889999963 1222456788899999999877 4678887 67889999999874321 1
Q ss_pred --------eC--CCChHHHHHHHHHhCCceEEE----EecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE--eeCCCCH
Q 021527 199 --------TT--PTTPTDRMKAIVEASEGFVYL----VSSIGVTGARASISGHVQTLLREIKESSTKPVAV--GFGISKP 262 (311)
Q Consensus 199 --------is--p~t~~eri~~i~~~a~gfiY~----vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v--GfGIst~ 262 (311)
.. --|.++...+..+.. |...+ .+..|..-. +.+.--.+.|+++++.+++|++. |.||. .
T Consensus 142 ~Edg~~~~~~~~~~tdp~ea~~fv~~t-giD~LA~aiGn~HG~Yk~--~~p~L~~~~L~~i~~~~~~PlVlHGgSGip-~ 217 (286)
T COG0191 142 EEDGVVLYTDPADLTDPEEALEFVERT-GIDALAAAIGNVHGVYKP--GNPKLDFDRLKEIQEAVSLPLVLHGGSGIP-D 217 (286)
T ss_pred ccCCcccccchhhhCCHHHHHHHHhcc-CcceeeeeccccccCCCC--CCCCCCHHHHHHHHHHhCCCEEEeCCCCCC-H
Confidence 01 012234444444433 33333 233343211 11212236799999999999755 77886 6
Q ss_pred HHHHHHHHcCCcEEEEhhHhh
Q 021527 263 EHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 263 e~v~~v~~~GADGvIVGSaiv 283 (311)
+++++..++|.-=+=|.|-+-
T Consensus 218 ~eI~~aI~~GV~KvNi~Td~~ 238 (286)
T COG0191 218 EEIREAIKLGVAKVNIDTDLQ 238 (286)
T ss_pred HHHHHHHHhCceEEeeCcHHH
Confidence 999999999988887877543
No 381
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=96.68 E-value=0.021 Score=55.76 Aligned_cols=123 Identities=18% Similarity=0.246 Sum_probs=69.6
Q ss_pred HHHHHHHcCCcEEEecC----CChhhHH----HHHHHHHHcCCCeEEEeCCCChHHH--------HHHHHH-h-------
Q 021527 159 FMSTVRDIGIRGLVVPD----VPLEETE----SLQKEAMKNKIELVLFTTPTTPTDR--------MKAIVE-A------- 214 (311)
Q Consensus 159 fi~~~~~aGadGviipD----lp~ee~~----~~~~~~~~~gi~~I~lisp~t~~er--------i~~i~~-~------- 214 (311)
-...++++|++.+++.. ..+.|.. .-...+.++|+.+|+-+.-+ .++| +....+ .
T Consensus 87 S~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCiGE~-~eer~~g~~~~v~~~Ql~~~l~~v~~~ 165 (355)
T PRK14905 87 SPLMLKELGIELVMIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGET-LEQKNYNISDEVLRTQLKIGLHGVSAE 165 (355)
T ss_pred CHHHHHHcCCCEEEECcccccCcccccHHHHHHHHHHHHHCCCEEEEEcCCc-HHHHhccCHHHHHHHHHHHHHccCCHh
Confidence 45678899999999863 1223332 33456788899888766643 2222 111111 0
Q ss_pred --CCceEEEEe--cCCccCCCCCCCchHHHHHHHHhhc---------CCCcEEEeeCCCCHHHHHHH-HHcCCcEEEEhh
Q 021527 215 --SEGFVYLVS--SIGVTGARASISGHVQTLLREIKES---------STKPVAVGFGISKPEHVQQV-AGWGADGVIVGS 280 (311)
Q Consensus 215 --a~gfiY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~---------~~~Pv~vGfGIst~e~v~~v-~~~GADGvIVGS 280 (311)
..-+|-|.+ ..| ||.+...++...+..+.+|+. .+++|++|++|+ ++++.++ ...+.||+-||+
T Consensus 166 ~~~~~vIAYEPvWAIG-Tgg~~as~~~~~~~~~~Ir~~l~~~~~~~~~~v~ILYGGSV~-~~N~~~l~~~~~iDG~LVG~ 243 (355)
T PRK14905 166 QLPHLFIAYEPVWAIG-EGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGGSVN-LENANELIMKPHIDGLFIGR 243 (355)
T ss_pred hcCceEEEECChHHhC-CCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEeCcCC-HHHHHHHhcCCCCCEEEech
Confidence 111232322 223 443333333334444444432 147999999998 5666665 456689999999
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
+-.+
T Consensus 244 asl~ 247 (355)
T PRK14905 244 SAWD 247 (355)
T ss_pred hhcc
Confidence 9886
No 382
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=96.67 E-value=0.18 Score=47.56 Aligned_cols=178 Identities=14% Similarity=0.199 Sum_probs=103.7
Q ss_pred eCCCCChhhHHHHHHHHHHC-CCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEe
Q 021527 70 TAGDPDLSTTAEALKLLDSC-GSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFT 146 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~-GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~ 146 (311)
--|.-|.+.+.+.++.+.+. |+|.|-++--..+ ++. .+.++-.++++...+. -++||+.-.
T Consensus 14 ~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE----~~~------------Lt~~Er~~~~~~~~~~~~~~~~viagv 77 (288)
T cd00954 14 ENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGE----GFL------------LSVEERKQIAEIVAEAAKGKVTLIAHV 77 (288)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcC----ccc------------CCHHHHHHHHHHHHHHhCCCCeEEecc
Confidence 34667788999999999999 9999988522211 111 3445555566555443 357887754
Q ss_pred cCcchhccCHHHHHHHHHHcCCcEEEe--cCC---ChhhHHH-HHHHHHHc-CCCeEEEeCCC-----ChHHHHHHHHHh
Q 021527 147 YYNPILKRGVDNFMSTVRDIGIRGLVV--PDV---PLEETES-LQKEAMKN-KIELVLFTTPT-----TPTDRMKAIVEA 214 (311)
Q Consensus 147 Y~n~i~~~g~~~fi~~~~~aGadGvii--pDl---p~ee~~~-~~~~~~~~-gi~~I~lisp~-----t~~eri~~i~~~ 214 (311)
-.+.. ...-+..+.+.++|+|++++ |-. ..++..+ |...++.. ++.++++=.|. .+.+-+.++++
T Consensus 78 ~~~~~--~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~- 154 (288)
T cd00954 78 GSLNL--KESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE- 154 (288)
T ss_pred CCCCH--HHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc-
Confidence 32211 11245677889999999986 221 1245555 45556667 78877664443 23466666654
Q ss_pred CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhH
Q 021527 215 SEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281 (311)
Q Consensus 215 a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSa 281 (311)
-..++.+=. .+| +. ..+.++++.. +..++.|.. +.+...+..|+||.+.|.+
T Consensus 155 ~pnivgiK~---s~~-------d~-~~~~~~~~~~~~~~~v~~G~d----~~~~~~~~~G~~G~i~~~~ 208 (288)
T cd00954 155 IPNVIGVKF---TAT-------DL-YDLERIRAASPEDKLVLNGFD----EMLLSALALGADGAIGSTY 208 (288)
T ss_pred CCCEEEEEe---CCC-------CH-HHHHHHHHhCCCCcEEEEech----HHHHHHHHcCCCEEEeChh
Confidence 334443311 011 12 2344444332 456666653 3455666799999998865
No 383
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=96.62 E-value=0.049 Score=56.38 Aligned_cols=170 Identities=15% Similarity=0.136 Sum_probs=91.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-C---CCcEEEEecCcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-M---SCPIALFTYYNP 150 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~---~iPiilm~Y~n~ 150 (311)
+.++-+++++.|.+.|+|.||+|+|-+.| .|- +.++++.+. . ++.+..++-
T Consensus 46 s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s~-~D~---------------------e~v~~i~~~~l~~~~~~i~al~~--- 100 (564)
T TIGR00970 46 SPARKRRYFDLLVRIGFKEIEVGFPSASQ-TDF---------------------DFVREIIEQGAIPDDVTIQVLTQ--- 100 (564)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCH-HHH---------------------HHHHHHHHhcCCCCCcEEEEEcC---
Confidence 34778999999999999999999998764 332 234444322 1 222333321
Q ss_pred hhccCHHHHHHHHHHc--CCc--EEEe--c--C--------CChhh----HHHHHHHHHHcCCC---------eEEEeCC
Q 021527 151 ILKRGVDNFMSTVRDI--GIR--GLVV--P--D--------VPLEE----TESLQKEAMKNKIE---------LVLFTTP 201 (311)
Q Consensus 151 i~~~g~~~fi~~~~~a--Gad--Gvii--p--D--------lp~ee----~~~~~~~~~~~gi~---------~I~lisp 201 (311)
.....++.+.++ |++ .|.+ + | ...+| ..+..+.++.++.. .+.+ ++
T Consensus 101 ----~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f-~~ 175 (564)
T TIGR00970 101 ----SREELIERTFEALSGAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEY-SP 175 (564)
T ss_pred ----CchhhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEE-ec
Confidence 123344555554 332 3333 2 2 12233 33445557777753 1333 33
Q ss_pred C----ChHHHHHHHHHhC--Cce-----EEEEecCCccCCCCCCCchHHHHHHHHhhcC----CCcEEE----eeCCCCH
Q 021527 202 T----TPTDRMKAIVEAS--EGF-----VYLVSSIGVTGARASISGHVQTLLREIKESS----TKPVAV----GFGISKP 262 (311)
Q Consensus 202 ~----t~~eri~~i~~~a--~gf-----iY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~----~~Pv~v----GfGIst~ 262 (311)
. ++.+++.++.+.+ .|. .-.+..--++|. ..|..+.++++.+++.. ++|+-+ .+|.-.+
T Consensus 176 Ed~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~--a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvA 253 (564)
T TIGR00970 176 ESFSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEM--TTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVA 253 (564)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCc--cCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHH
Confidence 3 5566665555542 121 112233345564 34667788899887753 345554 3444433
Q ss_pred HHHHHHHHcCCcEEE
Q 021527 263 EHVQQVAGWGADGVI 277 (311)
Q Consensus 263 e~v~~v~~~GADGvI 277 (311)
+.-..+++||+-|=
T Consensus 254 -NslaAv~aGa~~v~ 267 (564)
T TIGR00970 254 -AAELGFLAGADRIE 267 (564)
T ss_pred -HHHHHHHhCCCEEE
Confidence 34455679998874
No 384
>PRK03739 2-isopropylmalate synthase; Validated
Probab=96.62 E-value=0.086 Score=54.50 Aligned_cols=177 Identities=14% Similarity=0.132 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-C---CCcEEEEecCcch
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-M---SCPIALFTYYNPI 151 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~---~iPiilm~Y~n~i 151 (311)
.++-+++++.|.+.|+|.||+|+|-+.| + -++.++++.+. . +.-+..++
T Consensus 51 ~~~Ki~ia~~L~~~GV~~IE~GfP~~s~---~-------------------e~e~v~~i~~~~~~~~~~~i~~l~----- 103 (552)
T PRK03739 51 PERKLRMFDLLVKIGFKEIEVGFPSASQ---T-------------------DFDFVRELIEEGLIPDDVTIQVLT----- 103 (552)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCh---H-------------------HHHHHHHHHHhcCCCCCCEEEEEe-----
Confidence 4778899999999999999999877443 2 13455555332 2 22233332
Q ss_pred hccCHHHHHHHHHHc--CCc--EEEe--c--CC--------Chhh----HHHHHHHHHHcCCCe-----EEEeCCC----
Q 021527 152 LKRGVDNFMSTVRDI--GIR--GLVV--P--DV--------PLEE----TESLQKEAMKNKIEL-----VLFTTPT---- 202 (311)
Q Consensus 152 ~~~g~~~fi~~~~~a--Gad--Gvii--p--Dl--------p~ee----~~~~~~~~~~~gi~~-----I~lisp~---- 202 (311)
......++.+.++ |++ .+.+ + |+ ..+| ..+....++.+|... -+-.++.
T Consensus 104 --r~~~~di~~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR 181 (552)
T PRK03739 104 --QAREHLIERTFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESFTG 181 (552)
T ss_pred --ccchhHHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccCCC
Confidence 2234556666655 332 3433 2 21 1233 344556667777322 1222434
Q ss_pred ChHHHHHHHHHhC-----Cc---eEEEEecCCccCCCCCCCchHHHHHHHHhhcC----CCcEEE----eeCCCCHHHHH
Q 021527 203 TPTDRMKAIVEAS-----EG---FVYLVSSIGVTGARASISGHVQTLLREIKESS----TKPVAV----GFGISKPEHVQ 266 (311)
Q Consensus 203 t~~eri~~i~~~a-----~g---fiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~----~~Pv~v----GfGIst~e~v~ 266 (311)
++.+.+.++.+.+ .| ... +...-++|. ..|..+.++++.+++.. ++++-+ .+|.-.++ .-
T Consensus 182 ~d~~~l~~~~~~a~~~~~ag~~~~~~-i~l~DTvG~--~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvAN-sl 257 (552)
T PRK03739 182 TELDFALEVCDAVIDVWQPTPERKVI-LNLPATVEM--STPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAA-AE 257 (552)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCceeE-EEeccCCcC--cCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHH-HH
Confidence 5566665555542 22 111 222235554 34666778888888765 456655 44555444 44
Q ss_pred HHHHcCCcEEEEhhHhhchhhh
Q 021527 267 QVAGWGADGVIVGSAMVKLLGE 288 (311)
Q Consensus 267 ~v~~~GADGvIVGSaiv~~~~~ 288 (311)
..+++||+.|= .-+..++|
T Consensus 258 aAv~aGa~~v~---gtvnG~GE 276 (552)
T PRK03739 258 LALMAGADRVE---GCLFGNGE 276 (552)
T ss_pred HHHHhCCCEEE---eeCCcCcc
Confidence 55679998874 33344444
No 385
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.61 E-value=0.15 Score=47.10 Aligned_cols=129 Identities=16% Similarity=0.215 Sum_probs=76.1
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc-CCC--CCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG-VPY--SDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM 138 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG-~Pf--sDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~ 138 (311)
...++.=+.-||-+.+...+.++.+.++|++.|.+- --+ .---..|.. =.+.++..+-++..++..
T Consensus 69 ~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~-----------~~~~ee~~~ki~aa~~a~ 137 (243)
T cd00377 69 DLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKV-----------LVPIEEFVAKIKAARDAR 137 (243)
T ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCe-----------ecCHHHHHHHHHHHHHHH
Confidence 344666666788888899999999999999999992 000 000000100 024444455555554432
Q ss_pred C--CcEEEEecCcchhc--cCHHHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCC
Q 021527 139 S--CPIALFTYYNPILK--RGVDNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTT 203 (311)
Q Consensus 139 ~--iPiilm~Y~n~i~~--~g~~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t 203 (311)
+ .++.+..-.+.+.. .++++-+++ +.++|+|++.++-.. ..++++..+++.++.++.+.+|..
T Consensus 138 ~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~--~~~~~~~~~~~~~~Pl~~~~~~~~ 207 (243)
T cd00377 138 DDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK--DPEEIRAFAEAPDVPLNVNMTPGG 207 (243)
T ss_pred hccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC--CHHHHHHHHhcCCCCEEEEecCCC
Confidence 2 24444433233322 567766654 578999999987432 334555566666777777776654
No 386
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=96.61 E-value=0.068 Score=46.96 Aligned_cols=95 Identities=23% Similarity=0.358 Sum_probs=66.5
Q ss_pred HHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE--EeCCCChHHH-HHHHHHhCCceEEEEecCCccCCCCCCCchHHH
Q 021527 164 RDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL--FTTPTTPTDR-MKAIVEASEGFVYLVSSIGVTGARASISGHVQT 240 (311)
Q Consensus 164 ~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~--lisp~t~~er-i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~ 240 (311)
.....||+|-. -......++++|+..|+ |+-.+..-++ ++.+.+....|+=+.+ | + +.+
T Consensus 73 ~~~~pdGIIST------k~~~i~~Akk~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvLP--G-------v---~Pk 134 (181)
T COG1954 73 EVIKPDGIIST------KSNVIKKAKKLGILAIQRLFILDSIALEKGIKQIEKSEPDFIEVLP--G-------V---MPK 134 (181)
T ss_pred HhccCCeeEEc------cHHHHHHHHHcCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEEcC--c-------c---cHH
Confidence 33458997554 22356678999997663 3333333344 5556556677765543 2 1 236
Q ss_pred HHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEE
Q 021527 241 LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 241 ~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGv 276 (311)
.++++.+.++.||+.|+=|.+.|++.+++++||-.|
T Consensus 135 vi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~av 170 (181)
T COG1954 135 VIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAV 170 (181)
T ss_pred HHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEE
Confidence 799999999999999999999999999999988666
No 387
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=96.60 E-value=0.039 Score=49.87 Aligned_cols=192 Identities=17% Similarity=0.255 Sum_probs=107.0
Q ss_pred EEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE
Q 021527 66 IPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 66 i~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm 145 (311)
..|++...| +.++.+...|+|.+-++..-+-|..+ +...|. ++.+.+..+...+ .....+++-
T Consensus 3 ~l~vp~~~~------~~~~~a~~~g~D~vilDlEd~~~~~~-----K~~ar~-----~~~~~~~~~~~~~-~~~~~~~VR 65 (221)
T PF03328_consen 3 GLFVPANSP------KMLEKAAASGADFVILDLEDGVPPDE-----KDEARE-----DLAEALRSIRAAR-AAGSEIIVR 65 (221)
T ss_dssp EEEEESTSH------HHHHHHHTTCSSEEEEESSTTSSGGG-----HHHHHH-----HHHHHHHHHHHHT-TSSSEEEEE
T ss_pred EEEEeCCCH------HHHHHHHhcCCCEEEEeCcccCCccc-----chhhHH-----HHHHHHHhhcccc-cccccceec
Confidence 457777776 77888889999999998655443332 222221 2223333333322 233455554
Q ss_pred ecCcchhccCHHHHHHHHHHcCCcEEEecCCC-hhhHHHHHHHHHHc---------CCCeEEEeCCCChH--HHHHHHHH
Q 021527 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP-LEETESLQKEAMKN---------KIELVLFTTPTTPT--DRMKAIVE 213 (311)
Q Consensus 146 ~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp-~ee~~~~~~~~~~~---------gi~~I~lisp~t~~--eri~~i~~ 213 (311)
. |........+.++ +.+.|++||++|..- .++...+.+.++.. .+..+.++ .|+. +.+.+|+
T Consensus 66 v--n~~~~~~~~~Dl~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~I--ET~~gv~~~~eI~- 139 (221)
T PF03328_consen 66 V--NSLDSPHIERDLE-ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMI--ETPEGVENLEEIA- 139 (221)
T ss_dssp ---SSTTCHHHHHHHH-HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE---SHHHHHTHHHHH-
T ss_pred C--CCCCcchhhhhhh-hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEee--ccHHHHhCHHhhc-
Confidence 3 4433323345555 899999999999763 45666677766554 24455555 4443 6678887
Q ss_pred hCCceE--EEE-----ecCCccCCCCCCCchHHHHHHHHhh---cCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 214 ASEGFV--YLV-----SSIGVTGARASISGHVQTLLREIKE---SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 214 ~a~gfi--Y~v-----s~~G~TG~~~~~~~~~~~~l~~vk~---~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
...++. ++. ...|.++.. ..+.+.+..+++-. ..++|. +|.=..+.++...+.+.|...+..|.-..
T Consensus 140 a~~~v~~l~~G~~Dls~~lG~~~~~--~~~~~~~a~~~v~~aa~a~g~~~-i~~~~~~~~d~~~~~~~~~~~~~~G~dg~ 216 (221)
T PF03328_consen 140 AVPGVDGLFFGPADLSASLGIPGQP--DHPEVLEARSKVVLAARAAGKPA-IDGVFPDFEDAEGLEAEGFRARALGFDGK 216 (221)
T ss_dssp TSTTEEEEEE-HHHHHHHTTTTTST--TSHHHHHHHHHHHHHHHHTTEEE-EEEEESSSSHHHHHHHHHHHCCEEEEHHC
T ss_pred ccCCeeEEEeCcHHHHhhhccCCCC--cchHHHHHHHHHHHHHHHcCCCe-EEEeeCCHHHHHHHHHHHHHHHHHccccc
Confidence 455554 332 245655532 23344444444433 236755 34433456778888877777777775443
No 388
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.59 E-value=0.84 Score=44.79 Aligned_cols=207 Identities=16% Similarity=0.183 Sum_probs=116.6
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.+.+.+.++.|.+.|+.++-=| .|. |-... . + -.|... +-+.++++.+++.++|++--.+ +
T Consensus 131 ~~~~~~~A~~lk~~g~~~~r~~-~~k-pRtsp-~----~----f~g~~~-e~l~~L~~~~~~~Gl~~~t~v~-d------ 191 (360)
T PRK12595 131 YEQVEAVAKALKAKGLKLLRGG-AFK-PRTSP-Y----D----FQGLGV-EGLKILKQVADEYGLAVISEIV-N------ 191 (360)
T ss_pred HHHHHHHHHHHHHcCCcEEEcc-ccC-CCCCC-c----c----ccCCCH-HHHHHHHHHHHHcCCCEEEeeC-C------
Confidence 4789999999999999877643 442 22111 0 0 134555 5577888888899999877432 2
Q ss_pred HHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCC--ChHHHH---HHHHHhCC-ceEEEEecCCccC
Q 021527 156 VDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPT--TPTDRM---KAIVEASE-GFVYLVSSIGVTG 229 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~--t~~eri---~~i~~~a~-gfiY~vs~~G~TG 229 (311)
..-++.+.+. +|.+-|+-..... ..+...+.+.|. +|.+-+.. +.+|.. +.+.+... .++.|- .|++.
T Consensus 192 -~~~~~~l~~~-vd~lkI~s~~~~n-~~LL~~~a~~gk-PVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~e--rg~s~ 265 (360)
T PRK12595 192 -PADVEVALDY-VDVIQIGARNMQN-FELLKAAGRVNK-PVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCE--RGIRT 265 (360)
T ss_pred -HHHHHHHHHh-CCeEEECcccccC-HHHHHHHHccCC-cEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEEC--CccCC
Confidence 3456666777 8998888443333 346666677785 46665554 443332 22222222 344332 24443
Q ss_pred CCCC-CCchHHHHHHHHhhcCCCcEEEeeCCCC------HHHHHHHHHcCCcEEEEhhHhhchhhhcCCch--hHHHHHH
Q 021527 230 ARAS-ISGHVQTLLREIKESSTKPVAVGFGISK------PEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE--EGLKELE 300 (311)
Q Consensus 230 ~~~~-~~~~~~~~l~~vk~~~~~Pv~vGfGIst------~e~v~~v~~~GADGvIVGSaiv~~~~~~~~~~--~~~~~~~ 300 (311)
..+. .+.-....+..+|+.+++||+++..=+. +.........||||.+|=..+-+-.. ..+.. -..++++
T Consensus 266 yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~dp~~a-~~D~~~sl~p~el~ 344 (360)
T PRK12595 266 YEKATRNTLDISAVPILKQETHLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHPDPAVA-LSDSAQQMDIPEFD 344 (360)
T ss_pred CCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecCCCCCC-CCchhhhCCHHHHH
Confidence 2211 1111234588888888999877432211 12345567899999999877733221 11111 1145666
Q ss_pred HHHHHHHh
Q 021527 301 KFAKSLKS 308 (311)
Q Consensus 301 ~~~~~l~~ 308 (311)
+++++++.
T Consensus 345 ~l~~~i~~ 352 (360)
T PRK12595 345 RFLDELKP 352 (360)
T ss_pred HHHHHHHH
Confidence 66666553
No 389
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=96.59 E-value=0.029 Score=50.76 Aligned_cols=121 Identities=23% Similarity=0.297 Sum_probs=68.2
Q ss_pred HHHHHHHcCCcEEEecCC--Chhh--HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEe--cCCccCCCC
Q 021527 159 FMSTVRDIGIRGLVVPDV--PLEE--TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS--SIGVTGARA 232 (311)
Q Consensus 159 fi~~~~~aGadGviipDl--p~ee--~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs--~~G~TG~~~ 232 (311)
-.+.+++.|++++|+..- .+.| ...-.+.+.++|+.+|+-+ ....+.+. ......-.+-|.+ ..| ||...
T Consensus 73 S~~mLkd~G~~~viiGHSERRf~Etdi~~Kv~~a~~~gl~~IvCi--~~v~~q~~-~~~~~~~vIAYEPvWAIG-tG~~a 148 (205)
T TIGR00419 73 SAEMLKDIGAKGTLINHSERRMKLADIEKKIARLKELGLTSVVCT--NNVLTTAA-AAALEPDVVAVEPPELIG-TGIPV 148 (205)
T ss_pred CHHHHHHcCCCEEEECcccCCCCccHHHHHHHHHHHCCCEEEEEE--HHHHHHHH-hhhhcCeEEEECCHHHhC-CCCCC
Confidence 456788899999988521 1222 2334556788999888766 11112221 1112223333322 223 55432
Q ss_pred CCCchHH---HHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 233 SISGHVQ---TLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 233 ~~~~~~~---~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
.+.+.+ +.++..++. .+++|++|++|+..+....+...+.||+-||++..+
T Consensus 149 -s~~~~~~v~~~ir~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl~ 203 (205)
T TIGR00419 149 -SPAQPEVVHGSVRAVKEVNESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLK 203 (205)
T ss_pred -CHHHHHHHHHHHHhhhhhcCCceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeeec
Confidence 223333 334433332 258999999998544445556778999999998765
No 390
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=96.57 E-value=0.093 Score=47.68 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=24.6
Q ss_pred CCcEEEeeCCCCHHHHHHHHHcCCcEE
Q 021527 250 TKPVAVGFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 250 ~~Pv~vGfGIst~e~v~~v~~~GADGv 276 (311)
.+||-+-+||+|.+++.++.++|||=+
T Consensus 175 ~v~IKaaGGirt~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 175 TIGVKASGGVRTAEDAIAMIEAGASRI 201 (211)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHhhHHh
Confidence 689999999999999999999998754
No 391
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=96.57 E-value=0.048 Score=51.55 Aligned_cols=133 Identities=16% Similarity=0.098 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCC----CCCCChHHHHHHHHHHHHcCCC
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYS----DPLADGPVIQAAATRSLARGTN 123 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~Pfs----DP~aDGp~Iq~a~~~Al~~G~~ 123 (311)
..+.+.++++++.-...+..=+ .|+.+++.+.++.++++|+|.|.+..-+. |....-|.... ...|.+
T Consensus 143 ~~~~eiv~~vr~~~~~pv~vKi---~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~-----~~gg~s 214 (300)
T TIGR01037 143 ELSADVVKAVKDKTDVPVFAKL---SPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILAN-----KTGGLS 214 (300)
T ss_pred HHHHHHHHHHHHhcCCCEEEEC---CCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCC-----CCcccc
Confidence 3466777777655333333333 25667889999999999999999832111 10000000000 001111
Q ss_pred HH----HHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec-------CCChhhHHHHHHHHHHcC
Q 021527 124 FN----AILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP-------DVPLEETESLQKEAMKNK 192 (311)
Q Consensus 124 ~~----~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip-------Dlp~ee~~~~~~~~~~~g 192 (311)
-. -.++.+.++++.+++||+..+-.. . .+.+.++.++|+|+|.+. ++.-+-..++.+.+.++|
T Consensus 215 g~~~~~~~l~~v~~i~~~~~ipvi~~GGI~-----s-~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g 288 (300)
T TIGR01037 215 GPAIKPIALRMVYDVYKMVDIPIIGVGGIT-----S-FEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEG 288 (300)
T ss_pred chhhhHHHHHHHHHHHhcCCCCEEEECCCC-----C-HHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 11 125688889988899999865221 1 234555556899998883 333222445666667777
Q ss_pred CC
Q 021527 193 IE 194 (311)
Q Consensus 193 i~ 194 (311)
..
T Consensus 289 ~~ 290 (300)
T TIGR01037 289 FT 290 (300)
T ss_pred CC
Confidence 54
No 392
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=96.56 E-value=0.027 Score=54.84 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=39.5
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.+.++++|+.+++||++- ||.++++++.+.+.|+|+++|...--+.+
T Consensus 202 ~~~i~~l~~~~~~PvivK-gv~~~~dA~~a~~~G~d~I~vsnhgG~~~ 248 (344)
T cd02922 202 WDDIKWLRKHTKLPIVLK-GVQTVEDAVLAAEYGVDGIVLSNHGGRQL 248 (344)
T ss_pred HHHHHHHHHhcCCcEEEE-cCCCHHHHHHHHHcCCCEEEEECCCcccC
Confidence 467999999999999888 78889999999999999999976443333
No 393
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=96.54 E-value=0.07 Score=50.47 Aligned_cols=194 Identities=14% Similarity=0.129 Sum_probs=110.5
Q ss_pred HHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 021527 56 RLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKE 133 (311)
Q Consensus 56 ~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ 133 (311)
.++++...-.++|+++-+=+.....+++..+.+.|++-|-+ | ||...|..-+.. +..+. ...++++.
T Consensus 53 ~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~G----D~p~~~~~~~~~-----~~~f~--~a~~Li~~ 121 (281)
T TIGR00677 53 RAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRG----DPPHIGDDWTEV-----EGGFQ--YAVDLVKY 121 (281)
T ss_pred HHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECC----CCCCCCCCCCCC-----CCCCc--CHHHHHHH
Confidence 33334345679999999999999999999999999998755 4 332222100000 00011 12456666
Q ss_pred hhccC--CCcEEEEecCcc-hhccCHHH---HHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCC--CeEEEeCCCC
Q 021527 134 VVPQM--SCPIALFTYYNP-ILKRGVDN---FMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKI--ELVLFTTPTT 203 (311)
Q Consensus 134 ir~~~--~iPiilm~Y~n~-i~~~g~~~---fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi--~~I~lisp~t 203 (311)
+++.. +.-+.+-+|-+. ......+. .++.=.++|+|- ++.-+-+ +...+|.+.|++.|+ ..++-+.|-+
T Consensus 122 i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f-~iTQ~~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~ 200 (281)
T TIGR00677 122 IRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADF-IITQLFYDVDNFLKFVNDCRAIGIDCPIVPGIMPIN 200 (281)
T ss_pred HHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCE-eeccceecHHHHHHHHHHHHHcCCCCCEEeeccccC
Confidence 66532 244666666421 11112333 222223699995 4543333 446788999998866 4555666766
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcE---EEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPV---AVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv---~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
+...+..+.+ ++|. .+|..+ ++++++.-+-+- ..|.-+. .++++++++.|++|+=+-|
T Consensus 201 s~~~~~~~~~-------------~~Gi--~vP~~l---~~~l~~~~~~~~~~~~~gi~~a-~~~~~~l~~~G~~giH~~t 261 (281)
T TIGR00677 201 NYASFLRRAK-------------WSKT--KIPQEI---MSRLEPIKDDDEAVRDYGIELI-VEMCQKLLASGIKGLHFYT 261 (281)
T ss_pred CHHHHHHHHh-------------cCCC--CCCHHH---HHHHHhccCCHHHHHHHHHHHH-HHHHHHHHHCCCCeeEEec
Confidence 6555444422 2333 466644 445544322221 1345554 6899999999999995544
No 394
>PRK15108 biotin synthase; Provisional
Probab=96.52 E-value=0.41 Score=46.52 Aligned_cols=185 Identities=13% Similarity=0.149 Sum_probs=109.0
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.++..+.++.+.+.|++-+-+|.-+.+|... .++.+.++++.+|+ ..+++.+ + |... .
T Consensus 78 ~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~----------------~~e~i~~~i~~ik~-~~i~v~~-s--~G~l--s 135 (345)
T PRK15108 78 VEQVLESARKAKAAGSTRFCMGAAWKNPHER----------------DMPYLEQMVQGVKA-MGLETCM-T--LGTL--S 135 (345)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCCCCCcc----------------hHHHHHHHHHHHHh-CCCEEEE-e--CCcC--C
Confidence 4678888888889999999887555455221 23455677777774 4555432 1 2211 1
Q ss_pred HHHHHHHHHHcCCcEEEe-------------cCCChhhHHHHHHHHHHcCCCeEE--Ee-CCCChHHHHHHHHHh-----
Q 021527 156 VDNFMSTVRDIGIRGLVV-------------PDVPLEETESLQKEAMKNKIELVL--FT-TPTTPTDRMKAIVEA----- 214 (311)
Q Consensus 156 ~~~fi~~~~~aGadGvii-------------pDlp~ee~~~~~~~~~~~gi~~I~--li-sp~t~~eri~~i~~~----- 214 (311)
++.++.++++|+|.+.+ +.-.+++..+..+.+++.|+..-. ++ --.+.++|++.+...
T Consensus 136 -~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~ 214 (345)
T PRK15108 136 -ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPT 214 (345)
T ss_pred -HHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccC
Confidence 67888999999997766 112235566677778888885331 11 234667776555432
Q ss_pred CCceEEEEecCCccCCCC-CCC-chHHHHHHH---HhhcC---CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhh
Q 021527 215 SEGFVYLVSSIGVTGARA-SIS-GHVQTLLRE---IKESS---TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283 (311)
Q Consensus 215 a~gfiY~vs~~G~TG~~~-~~~-~~~~~~l~~---vk~~~---~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv 283 (311)
..+++-+--.....|+.- ..+ .+..+.++. .|=.. .+++..|.....++.....+.+|||++++|-.++
T Consensus 215 ~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~l 291 (345)
T PRK15108 215 PPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLL 291 (345)
T ss_pred CCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecccHhHhChhhHHHHHHcCCcEEEECCccc
Confidence 223554422222233321 111 122344443 33333 3567777755556767888899999999998643
No 395
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=96.52 E-value=0.011 Score=57.95 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=39.0
Q ss_pred HHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 240 ~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+.|+.+|+.++.|+++. ||.++|+++++.++|+|||+|...=-+.+
T Consensus 226 ~~i~~ir~~~~~pviiK-gV~~~eda~~a~~~G~d~I~VSnhGGrql 271 (361)
T cd04736 226 QDLRWLRDLWPHKLLVK-GIVTAEDAKRCIELGADGVILSNHGGRQL 271 (361)
T ss_pred HHHHHHHHhCCCCEEEe-cCCCHHHHHHHHHCCcCEEEECCCCcCCC
Confidence 57999999999999777 79999999999999999999974444444
No 396
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=96.51 E-value=0.2 Score=47.71 Aligned_cols=184 Identities=16% Similarity=0.203 Sum_probs=111.7
Q ss_pred HHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHH
Q 021527 55 TRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132 (311)
Q Consensus 55 ~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~ 132 (311)
..++++....-|+++++=+=+.....+.+..+.+.|++-|-+ |-|.+++ |.+. ..--++++.++
T Consensus 75 ~~i~~~~g~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~--~~~~------------~~a~dLv~li~ 140 (296)
T PRK09432 75 KGIKKRTGLEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRGDLPPGS--GKPE------------MYASDLVTLLK 140 (296)
T ss_pred HHHHHHhCCCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCC--CCCC------------cCHHHHHHHHH
Confidence 344344345679999999989999999999999999998877 5333322 2221 11124445555
Q ss_pred HhhccCCCcEEEEecCc--chhccCHHH---HHHHHHHcCCcEEEecCCC--hhhHHHHHHHHHHcC--CCeEEEeCCCC
Q 021527 133 EVVPQMSCPIALFTYYN--PILKRGVDN---FMSTVRDIGIRGLVVPDVP--LEETESLQKEAMKNK--IELVLFTTPTT 203 (311)
Q Consensus 133 ~ir~~~~iPiilm~Y~n--~i~~~g~~~---fi~~~~~aGadGviipDlp--~ee~~~~~~~~~~~g--i~~I~lisp~t 203 (311)
+.. ... +.+-+|-. |-. ...+. +++.=.++|++. ++.-+= .+...+|.+.+++.| +..++-+.|-+
T Consensus 141 ~~~-~~~--i~va~yPeghp~~-~~~~~dl~~Lk~K~~aGA~~-~iTQ~~Fd~~~~~~f~~~~~~~Gi~vPIi~GI~pi~ 215 (296)
T PRK09432 141 SVA-DFD--ISVAAYPEVHPEA-KSAQADLINLKRKVDAGANR-AITQFFFDVESYLRFRDRCVSAGIDVEIVPGILPVS 215 (296)
T ss_pred HhC-CCc--cceeeCCCCCCCC-CCHHHHHHHHHHHHHcCCCe-eecccccchHHHHHHHHHHHHcCCCCCEEeeccccC
Confidence 442 233 44555532 221 12222 334445699995 454322 345778999999998 46677788888
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCc---EEEeeCCCCHHHHHHHHHcCCcEE
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKP---VAVGFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~P---v~vGfGIst~e~v~~v~~~GADGv 276 (311)
+..++..+.+ ..|. .+|.. +++++.+.-+-+ ...|.-+. .|+++.+.+.|++|+
T Consensus 216 s~~~~~~~~~-------------~~Gv--~vP~~---l~~~l~~~~d~~~~~~~~Gi~~a-~e~i~~L~~~gv~Gv 272 (296)
T PRK09432 216 NFKQLKKFAD-------------MTNV--RIPAW---MAKMFDGLDDDAETRKLVGASIA-MDMVKILSREGVKDF 272 (296)
T ss_pred CHHHHHHHHH-------------ccCC--CCCHH---HHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHCCCCEE
Confidence 8777766633 2222 45654 455554443332 11344444 699999999999999
No 397
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.51 E-value=0.043 Score=52.87 Aligned_cols=133 Identities=14% Similarity=0.087 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCC----H
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN----F 124 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~----~ 124 (311)
++.+....+++.-+..++.=+. |+.+...++++.+.++|+|.|.+-+-+..+..|-.... .-...|.+ .
T Consensus 150 ~~~eiv~~v~~~~~iPv~vKl~---p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~----~~~~~glSG~~~~ 222 (325)
T cd04739 150 RYLDILRAVKSAVTIPVAVKLS---PFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLE----VVPNLLLSSPAEI 222 (325)
T ss_pred HHHHHHHHHHhccCCCEEEEcC---CCccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccc----eecCCCcCCccch
Confidence 4566677776654555655554 55567889999999999999999665433322200000 00011111 1
Q ss_pred HHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCCh--------hhHHHHHHHHHHcCCC
Q 021527 125 NAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--------EETESLQKEAMKNKIE 194 (311)
Q Consensus 125 ~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--------ee~~~~~~~~~~~gi~ 194 (311)
...++++.++++.+++||+..|=.. ..++ +.++..+|||+|-+.-.-+ +=..++.+.+.++|++
T Consensus 223 ~~al~~v~~v~~~~~ipIig~GGI~-----s~~D-a~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~ 294 (325)
T cd04739 223 RLPLRWIAILSGRVKASLAASGGVH-----DAED-VVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYE 294 (325)
T ss_pred hHHHHHHHHHHcccCCCEEEECCCC-----CHHH-HHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCCC
Confidence 2336788899888899999876211 1233 3344459999998852211 2244566666777764
No 398
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=96.51 E-value=0.56 Score=44.84 Aligned_cols=155 Identities=20% Similarity=0.282 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCCC---CCCCC------ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVPY---SDPLA------DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT 146 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~Pf---sDP~a------DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~ 146 (311)
+...+.++.+.+.|+..|-| |+|- .|... ||.+ |+ .++.||+.+. -+++++
T Consensus 61 d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~giv-qr-----------------avr~ik~~~p-~l~iit 121 (330)
T COG0113 61 DRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDGIV-QR-----------------AVRAIKEAFP-ELVVIT 121 (330)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCCChH-HH-----------------HHHHHHHhCC-CeEEEe
Confidence 57899999999999998776 8883 23222 3422 32 4555665543 344442
Q ss_pred ------cCc----chhccC--------HHHHHHHH---HHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC-----
Q 021527 147 ------YYN----PILKRG--------VDNFMSTV---RDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT----- 200 (311)
Q Consensus 147 ------Y~n----~i~~~g--------~~~fi~~~---~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis----- 200 (311)
|.. .+...+ ++.+.+.+ +++|+|-|-=.|+=......+++.+.+.|...+..++
T Consensus 122 DvcLceyT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~AeAGAdivAPSdMMDGrV~aIR~aLd~ag~~~v~IMsYsaKy 201 (330)
T COG0113 122 DVCLCEYTDHGHCGILDDGGYVDNDETLEILAKQAVSQAEAGADIVAPSDMMDGRVGAIREALDEAGFIDVPIMSYSAKY 201 (330)
T ss_pred eecccCCcCCCccccccCCCeecchHHHHHHHHHHHHHHHcCCCeecccccccchHHHHHHHHHHcCCCcceeeehhHHH
Confidence 211 111111 13344432 6799998654566556677788889999987666433
Q ss_pred ---------------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCc
Q 021527 201 ---------------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKP 252 (311)
Q Consensus 201 ---------------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~P 252 (311)
|....|.++++.. ..+|...++=.- . -...+.++++|+.+++|
T Consensus 202 ASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD~~EGAD~lMVKP-------a--l~YLDIi~~vk~~~~lP 272 (330)
T COG0113 202 ASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELDIEEGADILMVKP-------A--LPYLDIIRRVKEEFNLP 272 (330)
T ss_pred hhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhhHhcCCcEEEEcC-------C--chHHHHHHHHHHhcCCC
Confidence 3333444544433 256766554111 1 13568899999999999
Q ss_pred EEEeeCCC
Q 021527 253 VAVGFGIS 260 (311)
Q Consensus 253 v~vGfGIs 260 (311)
+ +..-||
T Consensus 273 ~-~AYqVS 279 (330)
T COG0113 273 V-AAYQVS 279 (330)
T ss_pred e-EEEecc
Confidence 9 555554
No 399
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=96.50 E-value=0.49 Score=44.32 Aligned_cols=157 Identities=14% Similarity=0.166 Sum_probs=93.5
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCC
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSC 140 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~i 140 (311)
+..+..+.-++--+ .+.++...++|+|.|.+.+|-+ .++++.+.++..|+. ..+
T Consensus 71 ~~~~~~~~~~~~~~----~~~l~~a~~~gv~~iri~~~~~---------------------~~~~~~~~i~~ak~~G~~v 125 (266)
T cd07944 71 NTKIAVMVDYGNDD----IDLLEPASGSVVDMIRVAFHKH---------------------EFDEALPLIKAIKEKGYEV 125 (266)
T ss_pred CCEEEEEECCCCCC----HHHHHHHhcCCcCEEEEecccc---------------------cHHHHHHHHHHHHHCCCeE
Confidence 45667777655422 5677888899999999976543 244556677777754 333
Q ss_pred cEEEEecCcchhccCH---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-C--CCeEEEeCCCChHHHHHH
Q 021527 141 PIALFTYYNPILKRGV---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-K--IELVLFTTPTTPTDRMKA 210 (311)
Q Consensus 141 Piilm~Y~n~i~~~g~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-g--i~~I~lisp~t~~eri~~ 210 (311)
-+.++. .+.+.. .++++.+.++|++.+.++| +.+++..++...++++ + +.+-+-...+.--.-...
T Consensus 126 ~~~~~~----a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~ 201 (266)
T cd07944 126 FFNLMA----ISGYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANT 201 (266)
T ss_pred EEEEEe----ecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHH
Confidence 233322 112233 3566677889999999998 5678888888887764 3 333333333332233344
Q ss_pred HHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc
Q 021527 211 IVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES 248 (311)
Q Consensus 211 i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~ 248 (311)
++....|..++-+..+.-|.+.+ +..+++++..+++.
T Consensus 202 laA~~aGa~~vd~s~~G~G~~aG-N~~~E~~v~~l~~~ 238 (266)
T cd07944 202 LEAIELGVEIIDATVYGMGRGAG-NLPTELLLDYLNNK 238 (266)
T ss_pred HHHHHcCCCEEEEecccCCCCcC-cHHHHHHHHHHHHh
Confidence 54556788787443334555544 33455666666543
No 400
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.50 E-value=0.26 Score=42.56 Aligned_cols=93 Identities=15% Similarity=0.232 Sum_probs=57.9
Q ss_pred CccEEEEEeCCCCC----hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc
Q 021527 62 KVALIPYITAGDPD----LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ 137 (311)
Q Consensus 62 ~~~li~yi~~G~P~----~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~ 137 (311)
+..++ +-.|.++ .+.+.+.++.+.+.|+|.+.+..||--+. ++ +.+.+++.++++++.
T Consensus 48 ~~~v~--~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~-~~---------------~~~~~~~~~~~i~~~ 109 (201)
T cd00945 48 DVPVI--VVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLK-EG---------------DWEEVLEEIAAVVEA 109 (201)
T ss_pred CCeEE--EEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHh-CC---------------CHHHHHHHHHHHHHH
Confidence 44444 4455665 89999999999999999999986661100 00 245667788888776
Q ss_pred --CCCcEEEEecCcchhccCHH---HHHHHHHHcCCcEEEec
Q 021527 138 --MSCPIALFTYYNPILKRGVD---NFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 138 --~~iPiilm~Y~n~i~~~g~~---~fi~~~~~aGadGviip 174 (311)
.++|+++ |-+|-.....+ +.++.+.+.|++++=..
T Consensus 110 ~~~~~pv~i--y~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~ 149 (201)
T cd00945 110 ADGGLPLKV--ILETRGLKTADEIAKAARIAAEAGADFIKTS 149 (201)
T ss_pred hcCCceEEE--EEECCCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 4788766 33332211222 23344567788887553
No 401
>PRK08508 biotin synthase; Provisional
Probab=96.48 E-value=0.38 Score=45.28 Aligned_cols=183 Identities=15% Similarity=0.131 Sum_probs=100.2
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEc---CCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEE-EecCc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELG---VPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIAL-FTYYN 149 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG---~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiil-m~Y~n 149 (311)
+.+..++.++...+.|++.+.+. .-++|+ .++.+.++++.+|++. ++.+.. .++.
T Consensus 41 s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~-------------------~~e~~~ei~~~ik~~~p~l~i~~s~G~~- 100 (279)
T PRK08508 41 DIEQIVQEAKMAKANGALGFCLVTSGRGLDDK-------------------KLEYVAEAAKAVKKEVPGLHLIACNGTA- 100 (279)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeccCCCCcc-------------------cHHHHHHHHHHHHhhCCCcEEEecCCCC-
Confidence 45778888888888888887762 112221 2345667888888763 555432 2332
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec---------C----CChhhHHHHHHHHHHcCCCe----EEEeCCCChHHHHHHHH
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP---------D----VPLEETESLQKEAMKNKIEL----VLFTTPTTPTDRMKAIV 212 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip---------D----lp~ee~~~~~~~~~~~gi~~----I~lisp~t~~eri~~i~ 212 (311)
..+-++.++++|+|.+... + -.+++..+..+.+++.|++. ++-. -.|.++|++.+.
T Consensus 101 ------~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl-GEt~ed~~~~l~ 173 (279)
T PRK08508 101 ------SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGL-GESWEDRISFLK 173 (279)
T ss_pred ------CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEec-CCCHHHHHHHHH
Confidence 2667888999999988742 2 22345555666788889864 2333 455666754443
Q ss_pred Hh---CCceE---EEEecCCccCCCCCCC-chHHHHHHHHhhcC---CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHh
Q 021527 213 EA---SEGFV---YLVSSIGVTGARASIS-GHVQTLLREIKESS---TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282 (311)
Q Consensus 213 ~~---a~gfi---Y~vs~~G~TG~~~~~~-~~~~~~l~~vk~~~---~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSai 282 (311)
.. ....+ ++....|+.-.....+ .+....+.-.|-.. .+++..|--....+.-...+.+||+++++|-.+
T Consensus 174 ~lr~L~~~svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~~~~~~~~~~g~n~~~~g~~l 253 (279)
T PRK08508 174 SLASLSPHSTPINFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGGREVVFGERQYEIFEAGANAIVIGDYL 253 (279)
T ss_pred HHHcCCCCEEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCChhhhchhhHHHHHhcCCcceeecCcc
Confidence 32 22222 2233333211111121 12223333333333 344433332222344566778999999999976
Q ss_pred hc
Q 021527 283 VK 284 (311)
Q Consensus 283 v~ 284 (311)
.-
T Consensus 254 t~ 255 (279)
T PRK08508 254 TT 255 (279)
T ss_pred cC
Confidence 54
No 402
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=96.48 E-value=0.079 Score=51.11 Aligned_cols=103 Identities=18% Similarity=0.349 Sum_probs=78.4
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhc
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILK 153 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~ 153 (311)
-|.+.|++.++.|.++|+|++=+-+|-. ++| +.+++|++++++|++..-.||
T Consensus 33 ~Dv~aTv~QI~~L~~aG~dIVRvtv~~~---------e~A---------------~A~~~Ik~~~~vPLVaDiHf~---- 84 (361)
T COG0821 33 ADVEATVAQIKALERAGCDIVRVTVPDM---------EAA---------------EALKEIKQRLNVPLVADIHFD---- 84 (361)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEecCCH---------HHH---------------HHHHHHHHhCCCCEEEEeecc----
Confidence 4678899999999999999999976652 222 477889999999999987776
Q ss_pred cCHHHHHHHHHHcCCcEEEec--CCChhh-HHHHHHHHHHcCCCeEEEeCCCChHHH
Q 021527 154 RGVDNFMSTVRDIGIRGLVVP--DVPLEE-TESLQKEAMKNKIELVLFTTPTTPTDR 207 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviip--Dlp~ee-~~~~~~~~~~~gi~~I~lisp~t~~er 207 (311)
.++.-.+.++|+|.+=|. ....++ ..++.+.++++|+..=.-++--+-+++
T Consensus 85 ---~rla~~~~~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~GSLek~ 138 (361)
T COG0821 85 ---YRLALEAAECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAGSLEKR 138 (361)
T ss_pred ---HHHHHHhhhcCcceEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccCchhHH
Confidence 356777889999998773 344444 677899999999987666654444433
No 403
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=96.47 E-value=0.41 Score=48.53 Aligned_cols=148 Identities=16% Similarity=0.210 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC-cchhccC
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY-NPILKRG 155 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~-n~i~~~g 155 (311)
+-...+++...++|+|++=+. |++-|-+.++.+ ++.+|+.-..-.+.++|. +|.+...
T Consensus 105 dvv~~fv~~a~~~Gidi~Rif----d~lnd~~n~~~a-----------------i~~ak~~G~~~~~~i~yt~sp~~t~~ 163 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIF----DALNDPRNIQQA-----------------LRAVKKTGKEAQLCIAYTTSPVHTLN 163 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEc----ccCCCHHHHHHH-----------------HHHHHHcCCEEEEEEEEEeCCcCcHH
Confidence 445566888899999999995 455555444443 333343222222444553 3432111
Q ss_pred -HHHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHcC-CCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCCcc
Q 021527 156 -VDNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKNK-IELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIGVT 228 (311)
Q Consensus 156 -~~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~g-i~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G~T 228 (311)
..++++.+.+.|+|.|.+.| +.+++..++.+.+++.. +.+-+-...+.--.-...++....|..++- +..| -
T Consensus 164 y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g-~ 242 (468)
T PRK12581 164 YYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSP-F 242 (468)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccc-c
Confidence 13566778899999999998 55788888888887742 332222333332233344445556666663 3333 3
Q ss_pred CCCCCCCchHHHHHHHHhh
Q 021527 229 GARASISGHVQTLLREIKE 247 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~ 247 (311)
|.+++ ++.+++++.-++.
T Consensus 243 g~gag-N~~tE~lv~~L~~ 260 (468)
T PRK12581 243 SEGTS-QPATESMYLALKE 260 (468)
T ss_pred CCCcC-ChhHHHHHHHHHh
Confidence 33344 5556677776654
No 404
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=96.46 E-value=0.69 Score=45.24 Aligned_cols=172 Identities=12% Similarity=0.143 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH---
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL--- 128 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~--- 128 (311)
+.++.+.+.+...- +...+.++ .+.++.+.++|+|.|.+-+|-||. .++ ...+.+.++.+
T Consensus 53 e~i~~i~~~~~~~~--i~~~~r~~----~~di~~a~~~g~~~i~i~~~~Sd~-----~~~------~~~~~s~~e~l~~~ 115 (365)
T TIGR02660 53 AVIRAIVALGLPAR--LMAWCRAR----DADIEAAARCGVDAVHISIPVSDL-----QIE------AKLRKDRAWVLERL 115 (365)
T ss_pred HHHHHHHHcCCCcE--EEEEcCCC----HHHHHHHHcCCcCEEEEEEccCHH-----HHH------HHhCcCHHHHHHHH
Confidence 45555554433322 22333444 456778888999999999888763 111 12345555555
Q ss_pred -HHHHHhhccCCCcEEEEecCcchhccCH---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEe
Q 021527 129 -SMLKEVVPQMSCPIALFTYYNPILKRGV---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFT 199 (311)
Q Consensus 129 -~~i~~ir~~~~iPiilm~Y~n~i~~~g~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~li 199 (311)
+.++..++. ...+. +++.+ ..+... .++++.+.++|+|.+.++| +.+++..++...+++. ++.+-+-.
T Consensus 116 ~~~i~~ak~~-g~~v~-~~~ed-~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~l~~H~ 192 (365)
T TIGR02660 116 ARLVSFARDR-GLFVS-VGGED-ASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVDLPLEMHA 192 (365)
T ss_pred HHHHHHHHhC-CCEEE-EeecC-CCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 444444443 33332 33322 223333 3455677889999999998 5567777777776653 54433333
Q ss_pred CCCChHHHHHHHHHhCCceEEE-EecCCccCCCCCCCchHHHHHHHH
Q 021527 200 TPTTPTDRMKAIVEASEGFVYL-VSSIGVTGARASISGHVQTLLREI 245 (311)
Q Consensus 200 sp~t~~eri~~i~~~a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~v 245 (311)
..+.--.-...++....|.-++ .|..| -|.+.+. .++++++..+
T Consensus 193 HNd~GlA~ANalaA~~aGa~~vd~tl~G-iGeraGN-~~lE~lv~~L 237 (365)
T TIGR02660 193 HNDLGMATANTLAAVRAGATHVNTTVNG-LGERAGN-AALEEVAMAL 237 (365)
T ss_pred cCCCChHHHHHHHHHHhCCCEEEEEeec-ccccccc-CCHHHHHHHH
Confidence 3333323334444555677677 34444 4555443 3345555555
No 405
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=96.46 E-value=0.059 Score=52.98 Aligned_cols=39 Identities=31% Similarity=0.377 Sum_probs=32.3
Q ss_pred HHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 241 LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 241 ~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
.+.++++..++||++ +||.+.+++.++.+.|||+|++|.
T Consensus 179 ~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 179 NLKEFIGELDVPVIA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred HHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 355555566899987 679999999999999999999884
No 406
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=96.45 E-value=0.26 Score=44.10 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=88.6
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCcEEEEecCc-c
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYN-P 150 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~-~iPiilm~Y~n-~ 150 (311)
+...++..+.++...+.|+|.+-+- | - +++..++.. +.++.+-+--+ |
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~v~-----p-----~--------------------~v~~~~~~l~~~~~~v~~~~~fp 62 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVCVN-----P-----C--------------------FVPLAREALKGSGVKVCTVIGFP 62 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEc-----H-----H--------------------HHHHHHHHcCCCCcEEEEEEecC
Confidence 4456788888888888899999883 1 1 222222111 12222221111 1
Q ss_pred hhccCH---HHHHHHHHHcCCcEEEec-CCC----------hhhHHHHHHHHHHcCCCe--EEEeCCCChHHHHHHHHHh
Q 021527 151 ILKRGV---DNFMSTVRDIGIRGLVVP-DVP----------LEETESLQKEAMKNKIEL--VLFTTPTTPTDRMKAIVEA 214 (311)
Q Consensus 151 i~~~g~---~~fi~~~~~aGadGviip-Dlp----------~ee~~~~~~~~~~~gi~~--I~lisp~t~~eri~~i~~~ 214 (311)
....-. -.-++.+.+.|||.+-+. +.. .+|..++++.|. |+.+ |+-...-+ ++.+...++.
T Consensus 63 ~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkvI~e~~~l~-~~~i~~a~ri 139 (203)
T cd00959 63 LGATTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACG--GAPLKVILETGLLT-DEEIIKACEI 139 (203)
T ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEEEEecCCCC-HHHHHHHHHH
Confidence 111111 224678889999988662 222 122334444443 5432 22223333 3444444443
Q ss_pred --CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcE
Q 021527 215 --SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADG 275 (311)
Q Consensus 215 --a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADG 275 (311)
..|..|+=+.+|.++.. ...+++..+.+.++ ..+||-+.+||+|.+++.++..+|||=
T Consensus 140 a~e~GaD~IKTsTG~~~~~-at~~~v~~~~~~~~--~~v~ik~aGGikt~~~~l~~~~~g~~r 199 (203)
T cd00959 140 AIEAGADFIKTSTGFGPGG-ATVEDVKLMKEAVG--GRVGVKAAGGIRTLEDALAMIEAGATR 199 (203)
T ss_pred HHHhCCCEEEcCCCCCCCC-CCHHHHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHhChhh
Confidence 24667776555544221 11222222223233 468999999999999999999999874
No 407
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=96.42 E-value=0.63 Score=45.79 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=84.6
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH----hhccCCCcEEEEecCcchhccC
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKE----VVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~----ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.+.++.+.++|+|.|.+.+|-||. .+ -...|.+.++.++.+.+ .++. ...+.+- . ....+..
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~-----h~------~~~~~~s~~~~l~~~~~~v~~a~~~-G~~v~~~-~-ed~~r~~ 143 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDI-----HI------KHKLKKTREEVLERMVEAVEYAKDH-GLYVSFS-A-EDASRTD 143 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHH-----HH------HHHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEE-e-ccCCCCC
Confidence 456777888999999999888874 11 12345666666664443 3332 3333322 1 1122222
Q ss_pred H---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecCC
Q 021527 156 V---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSIG 226 (311)
Q Consensus 156 ~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~G 226 (311)
. .++++.+.++|++.+.++| +.+++..++...+++. ++.+-+-...+.--.-...++....|..++- |..|
T Consensus 144 ~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~G 223 (378)
T PRK11858 144 LDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAVDIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNG 223 (378)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeecc
Confidence 2 3566778889999999998 5567777777776654 4443333433333233344445556777773 4444
Q ss_pred ccCCCCCCCchHHHHHHHHh
Q 021527 227 VTGARASISGHVQTLLREIK 246 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk 246 (311)
-|.+.+. ..+++++..++
T Consensus 224 -lGeraGN-a~lE~vv~~L~ 241 (378)
T PRK11858 224 -LGERAGN-AALEEVVMALK 241 (378)
T ss_pred -ccccccC-ccHHHHHHHHH
Confidence 3444432 23444444443
No 408
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.42 E-value=0.031 Score=52.88 Aligned_cols=125 Identities=23% Similarity=0.233 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCC----C-----CC-------CChHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYS----D-----PL-------ADGPVIQ 111 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~Pfs----D-----P~-------aDGp~Iq 111 (311)
..+.+.++..++.-...+..=+. |+.+++.++++.++++|+|.|.+-+-+. | |. ..||.++
T Consensus 143 ~~~~eiv~~vr~~~~~pv~vKl~---~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~ 219 (301)
T PRK07259 143 ELAYEVVKAVKEVVKVPVIVKLT---PNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIK 219 (301)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcC---CCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcc
Confidence 45667777776554444444443 5667888999999999999998721110 1 11 1122211
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe-------cCCChhhHHHH
Q 021527 112 AAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV-------PDVPLEETESL 184 (311)
Q Consensus 112 ~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii-------pDlp~ee~~~~ 184 (311)
. -.++.++++++.+++||+..+-.+ . .+.+.++..+|+|+|-+ |+++-+-..++
T Consensus 220 p-------------~~l~~v~~i~~~~~ipvi~~GGI~-----~-~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l 280 (301)
T PRK07259 220 P-------------IALRMVYQVYQAVDIPIIGMGGIS-----S-AEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGL 280 (301)
T ss_pred c-------------ccHHHHHHHHHhCCCCEEEECCCC-----C-HHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHH
Confidence 1 135688889888899999876432 1 23444555689998877 33332223445
Q ss_pred HHHHHHcCCC
Q 021527 185 QKEAMKNKIE 194 (311)
Q Consensus 185 ~~~~~~~gi~ 194 (311)
...+.++|.+
T Consensus 281 ~~~~~~~g~~ 290 (301)
T PRK07259 281 EAYLDKYGIK 290 (301)
T ss_pred HHHHHHcCCC
Confidence 5556666654
No 409
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=96.41 E-value=0.11 Score=47.41 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=30.4
Q ss_pred HHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEE
Q 021527 240 TLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 240 ~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGv 276 (311)
+.++.+++.+ .++|-+-+||+|.+++.+++++|||=+
T Consensus 167 ~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~ri 205 (221)
T PRK00507 167 EDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRL 205 (221)
T ss_pred HHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceE
Confidence 4455555554 489999999999999999999999866
No 410
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=96.40 E-value=0.39 Score=50.09 Aligned_cols=172 Identities=15% Similarity=0.164 Sum_probs=92.1
Q ss_pred HHHHHHHcCCccEEEEEeCC-----CCCh--hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHH
Q 021527 53 TFTRLKKQGKVALIPYITAG-----DPDL--STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFN 125 (311)
Q Consensus 53 ~f~~~~~~~~~~li~yi~~G-----~P~~--~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~ 125 (311)
+++.+++...+..+..+..| |-.+ +...++++...++|+|++.+..+.+|. +-+
T Consensus 66 ~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~----~~~--------------- 126 (593)
T PRK14040 66 RLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP----RNL--------------- 126 (593)
T ss_pred HHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH----HHH---------------
Confidence 34444444444444444444 3332 345678888999999999998555552 222
Q ss_pred HHHHHHHHhhccCCCcEEEEecC-cchhccC-HHHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEE
Q 021527 126 AILSMLKEVVPQMSCPIALFTYY-NPILKRG-VDNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLF 198 (311)
Q Consensus 126 ~~~~~i~~ir~~~~iPiilm~Y~-n~i~~~g-~~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~l 198 (311)
...++..|+.-..--+..+|. +|.+... +.++++.+.+.|+|.+.+.| +.+++..++.+.+++. ++.+-+-
T Consensus 127 --~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H 204 (593)
T PRK14040 127 --ETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHLH 204 (593)
T ss_pred --HHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEEE
Confidence 223334443221111122331 3322110 13566678889999999988 5567888887777653 4443333
Q ss_pred eCCCChHHHHHHHHHhCCceEEE-EecCCccCCCCCCCchHHHHHHHHhh
Q 021527 199 TTPTTPTDRMKAIVEASEGFVYL-VSSIGVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 199 isp~t~~eri~~i~~~a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
...++--.-...++....|..++ .+..|. |.+.+ ++.+.+++..++.
T Consensus 205 ~Hnt~GlA~An~laAieAGa~~vD~ai~gl-G~~~G-n~~le~vv~~L~~ 252 (593)
T PRK14040 205 CHATTGLSTATLLKAIEAGIDGVDTAISSM-SMTYG-HSATETLVATLEG 252 (593)
T ss_pred ECCCCchHHHHHHHHHHcCCCEEEeccccc-ccccc-chhHHHHHHHHHh
Confidence 44443333344454555676666 344443 33333 3345566666643
No 411
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=96.39 E-value=0.49 Score=43.87 Aligned_cols=153 Identities=13% Similarity=0.188 Sum_probs=85.5
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH----HHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL----SMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~----~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+.++...++|+|.|.+.+|.||+ .+++ ..+.+.++.+ +.++..|+. ...+.+ +... ..++..
T Consensus 73 ~~v~~a~~~g~~~i~i~~~~s~~-----~~~~------~~~~~~~~~~~~~~~~i~~a~~~-G~~v~~-~~~~-~~~~~~ 138 (259)
T cd07939 73 EDIEAALRCGVTAVHISIPVSDI-----HLAH------KLGKDRAWVLDQLRRLVGRAKDR-GLFVSV-GAED-ASRADP 138 (259)
T ss_pred HHHHHHHhCCcCEEEEEEecCHH-----HHHH------HhCCCHHHHHHHHHHHHHHHHHC-CCeEEE-eecc-CCCCCH
Confidence 44666778999999999888874 1111 1234444444 455555543 233322 1111 111222
Q ss_pred ---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHH-cCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCcc
Q 021527 157 ---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMK-NKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228 (311)
Q Consensus 157 ---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~-~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~T 228 (311)
.++++.+.++|++.+.++| +.+++..++...+++ +++.+-+-...+.--.-...++....|..++-+..+.-
T Consensus 139 ~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~ 218 (259)
T cd07939 139 DFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATDLPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGL 218 (259)
T ss_pred HHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccc
Confidence 3566677889999999998 556777777777665 34433333333332233344555567777774444445
Q ss_pred CCCCCCCchHHHHHHHHhhc
Q 021527 229 GARASISGHVQTLLREIKES 248 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~~ 248 (311)
|.+.+. ..+++++..+++.
T Consensus 219 G~~aGN-~~tE~lv~~l~~~ 237 (259)
T cd07939 219 GERAGN-AALEEVVMALKHL 237 (259)
T ss_pred cccccC-cCHHHHHHHHHHh
Confidence 665553 3456666666554
No 412
>PRK06256 biotin synthase; Validated
Probab=96.39 E-value=0.61 Score=44.73 Aligned_cols=186 Identities=13% Similarity=0.088 Sum_probs=98.1
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccC
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG 155 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g 155 (311)
.+..++.++.+.+.|+..+.+..-...|. +. .++.++++++.+++..++.+.+. .. . -
T Consensus 93 ~eeI~~~~~~~~~~g~~~~~l~~~g~~p~--~~--------------~~~~~~e~i~~i~~~~~i~~~~~--~g-~---l 150 (336)
T PRK06256 93 IEELIEAAKEAIEEGAGTFCIVASGRGPS--GK--------------EVDQVVEAVKAIKEETDLEICAC--LG-L---L 150 (336)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEecCCCCC--ch--------------HHHHHHHHHHHHHhcCCCcEEec--CC-c---C
Confidence 36778888888888987666522122221 11 12456778888887655544332 11 1 1
Q ss_pred HHHHHHHHHHcCCcEEEec-------------CCChhhHHHHHHHHHHcCCCeEE--Ee-CCCChHHHHHHHHH---hCC
Q 021527 156 VDNFMSTVRDIGIRGLVVP-------------DVPLEETESLQKEAMKNKIELVL--FT-TPTTPTDRMKAIVE---ASE 216 (311)
Q Consensus 156 ~~~fi~~~~~aGadGviip-------------Dlp~ee~~~~~~~~~~~gi~~I~--li-sp~t~~eri~~i~~---~a~ 216 (311)
.++.++.++++|++.+.+. .-..++..+..+.+++.|+.... ++ ...+.+++.+.+.. ...
T Consensus 151 ~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~ 230 (336)
T PRK06256 151 TEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELDA 230 (336)
T ss_pred CHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCCC
Confidence 2678899999999998661 12234555667778888985431 22 24555665443322 222
Q ss_pred ceEEEEecCCccCCC--CCCCchHHHHH---HHHhhcC-CCc--EEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGAR--ASISGHVQTLL---REIKESS-TKP--VAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~--~~~~~~~~~~l---~~vk~~~-~~P--v~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
..+.+-......|+. ...+.+..+.+ .-.|-.. +.. +..|-...-.+.-...+ +||+++++|-.+.-
T Consensus 231 ~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~-~g~~~~~~g~~lt~ 305 (336)
T PRK06256 231 DSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGL-GGANSVIVGNYLTT 305 (336)
T ss_pred CEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHh-ccCceeeECCcccC
Confidence 223221122222321 11112233444 4444443 333 43333233333334445 79999999988654
No 413
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=96.39 E-value=0.83 Score=42.73 Aligned_cols=153 Identities=12% Similarity=0.164 Sum_probs=88.3
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHH----HHhhcc-CCCcEEEEe-cCcchhcc
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSML----KEVVPQ-MSCPIALFT-YYNPILKR 154 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i----~~ir~~-~~iPiilm~-Y~n~i~~~ 154 (311)
+.++...++|+|.|.+-+|.||. .++. ..|.+.++.++.+ +..|+. ..+-+.++. +..|..
T Consensus 75 ~di~~a~~~g~~~i~i~~~~S~~-----~~~~------~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~-- 141 (262)
T cd07948 75 DDARIAVETGVDGVDLVFGTSPF-----LREA------SHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLV-- 141 (262)
T ss_pred HHHHHHHHcCcCEEEEEEecCHH-----HHHH------HhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHH--
Confidence 45666778999999999998874 1111 2345555544444 444443 333344432 222221
Q ss_pred CHHHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccC
Q 021527 155 GVDNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229 (311)
Q Consensus 155 g~~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG 229 (311)
-+.++++.+.++|++.+.++| +.+++..++...+++. ++..-+-...+.--.-...++....|..++-+..+.-|
T Consensus 142 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlG 221 (262)
T cd07948 142 DLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIG 221 (262)
T ss_pred HHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccc
Confidence 135677888999999999998 4567777777777664 43332333333222333344444567777754444567
Q ss_pred CCCCCCchHHHHHHHHhh
Q 021527 230 ARASISGHVQTLLREIKE 247 (311)
Q Consensus 230 ~~~~~~~~~~~~l~~vk~ 247 (311)
.+.+.. .+++++.-+..
T Consensus 222 eraGn~-~~e~~~~~l~~ 238 (262)
T cd07948 222 ERNGIT-PLGGLIARMYT 238 (262)
T ss_pred cccCCc-cHHHHHHHHHh
Confidence 776644 45566665643
No 414
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=96.39 E-value=0.76 Score=44.23 Aligned_cols=150 Identities=17% Similarity=0.273 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCCC-CCCCC------ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc-EEEEe-
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVPY-SDPLA------DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP-IALFT- 146 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~Pf-sDP~a------DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP-iilm~- 146 (311)
+...+.++.+.+.|+..+-| |+|- .|+.. ||++. +.++.||+.+ | +++++
T Consensus 59 d~l~~~v~~~~~~Gi~av~LFgv~~~Kd~~gs~A~~~~g~v~------------------rair~iK~~~--p~l~vi~D 118 (323)
T PRK09283 59 DLLVKEAEEAVELGIPAVALFGVPELKDEDGSEAYNPDGLVQ------------------RAIRAIKKAF--PELGVITD 118 (323)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCcCCCCCcccccccCCCCHHH------------------HHHHHHHHhC--CCcEEEEe
Confidence 57899999999999998876 7653 33332 34432 2455666553 3 34442
Q ss_pred -----cCc----chhccCH-------HHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC-------
Q 021527 147 -----YYN----PILKRGV-------DNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT------- 200 (311)
Q Consensus 147 -----Y~n----~i~~~g~-------~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis------- 200 (311)
|.. .+...|. +...+. .+++|+|-|--.|.=.......++.+.++|+..+.+++
T Consensus 119 VcLc~YT~hGHcGil~~g~idND~Tl~~L~~~Al~~A~AGaDiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS 198 (323)
T PRK09283 119 VCLDEYTSHGHCGILEDGYVDNDETLELLAKQALSQAEAGADIVAPSDMMDGRVGAIREALDEAGFTDVPIMSYSAKYAS 198 (323)
T ss_pred eeccCCCCCCceecccCCcCcCHHHHHHHHHHHHHHHHhCCCEEEcccccccHHHHHHHHHHHCCCCCCceeecHHHHHH
Confidence 211 1111121 223332 36799999766687667788889999999996665433
Q ss_pred -------------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEE
Q 021527 201 -------------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVA 254 (311)
Q Consensus 201 -------------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~ 254 (311)
|....|-+++... ..+|...++=.- .+ ...+.|+++|+.+++|++
T Consensus 199 ~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~~EGAD~lMVKP-------al--~YLDIi~~~k~~~~~Pva 269 (323)
T PRK09283 199 AFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDIEEGADMVMVKP-------AL--PYLDIIRRVKDEFNLPVA 269 (323)
T ss_pred hhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcC-------Cc--hHHHHHHHHHhcCCCCEE
Confidence 3333344444433 256766554111 11 256889999999999995
Q ss_pred E
Q 021527 255 V 255 (311)
Q Consensus 255 v 255 (311)
+
T Consensus 270 a 270 (323)
T PRK09283 270 A 270 (323)
T ss_pred E
Confidence 5
No 415
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=96.38 E-value=0.2 Score=46.98 Aligned_cols=189 Identities=15% Similarity=0.205 Sum_probs=110.2
Q ss_pred HHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCC--CCCChHHHHHHHHHHHHcCCCHHHHHHHHH
Q 021527 57 LKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSD--PLADGPVIQAAATRSLARGTNFNAILSMLK 132 (311)
Q Consensus 57 ~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsD--P~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~ 132 (311)
++++-....|+|+++-+-+.....+++..+.+.|++-|-+ |=|.+. |..+|+. . +..++++
T Consensus 53 l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f-------------~--~a~~Li~ 117 (272)
T TIGR00676 53 IKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGF-------------N--YASELVE 117 (272)
T ss_pred HHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCC-------------C--CHHHHHH
Confidence 3333345679999999999999999999999999997763 533311 1122211 1 2234555
Q ss_pred Hhhcc-CCCcEEEEecCc-chhccCHHH---HHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCC--CeEEEeCCCC
Q 021527 133 EVVPQ-MSCPIALFTYYN-PILKRGVDN---FMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKI--ELVLFTTPTT 203 (311)
Q Consensus 133 ~ir~~-~~iPiilm~Y~n-~i~~~g~~~---fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi--~~I~lisp~t 203 (311)
.+++. -+..|.+-+|-+ .......+. .++.=.++|+|- ++.-+-+ +...+|.+.+++.|+ .+++-+.|-+
T Consensus 118 ~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f-~iTQ~~fd~~~~~~~~~~~~~~gi~~PIi~Gi~p~~ 196 (272)
T TIGR00676 118 FIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADY-AITQLFFDNDDYYRFVDRCRAAGIDVPIIPGIMPIT 196 (272)
T ss_pred HHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCe-EeeccccCHHHHHHHHHHHHHcCCCCCEecccCCcC
Confidence 55543 244566656543 111122332 233335689995 4543333 457788999999876 4555567777
Q ss_pred hHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcE---EEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 204 PTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPV---AVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 204 ~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv---~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
+...+..+.. ..|+ .+|..+ ++++.+..+.+- -.|.-+. .++++++.+.|++|+=+-|
T Consensus 197 s~k~~~~~~~----------~~Gv-----~vP~~~---~~~l~~~~~~~~~~~~~gi~~~-~~~~~~l~~~g~~GiHl~t 257 (272)
T TIGR00676 197 NFKQLLRFAE----------RCGA-----EIPAWL---VKRLEKYDDDPEEVRAVGIEYA-TDQCEDLIAEGVPGIHFYT 257 (272)
T ss_pred CHHHHHHHHh----------ccCC-----CCCHHH---HHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHCCCCEEEEcC
Confidence 6665545433 1122 456544 444444333221 1244444 6899999999999995555
No 416
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.37 E-value=0.45 Score=43.52 Aligned_cols=181 Identities=14% Similarity=0.121 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHcCC-ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCC--CH
Q 021527 48 VGLAETFTRLKKQGK-VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGT--NF 124 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~-~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~--~~ 124 (311)
....+.++.+++.++ ..+..+...| .+.++.+.++|+|.+.+-++-|| ...+. -+..+. .+
T Consensus 51 ~~~~~~i~~l~~~~~~~~~~~l~~~~-------~~~i~~a~~~g~~~i~i~~~~s~-----~~~~~----~~~~~~~~~~ 114 (265)
T cd03174 51 EDDWEVLRAIRKLVPNVKLQALVRNR-------EKGIERALEAGVDEVRIFDSASE-----THSRK----NLNKSREEDL 114 (265)
T ss_pred CCHHHHHHHHHhccCCcEEEEEccCc-------hhhHHHHHhCCcCEEEEEEecCH-----HHHHH----HhCCCHHHHH
Confidence 345566666666653 3444555555 67888999999999999766654 11111 112222 34
Q ss_pred HHHHHHHHHhhccCCCcEEEEecCcchhc--cC---HHHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHcC--C
Q 021527 125 NAILSMLKEVVPQMSCPIALFTYYNPILK--RG---VDNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKNK--I 193 (311)
Q Consensus 125 ~~~~~~i~~ir~~~~iPiilm~Y~n~i~~--~g---~~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~g--i 193 (311)
+++.+.++..++. ..++.+.. ..++. +. +.++++.+.+.|++.+.+.| +.+++..++.+.+++.- +
T Consensus 115 ~~~~~~i~~a~~~-G~~v~~~~--~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~ 191 (265)
T cd03174 115 ENAEEAIEAAKEA-GLEVEGSL--EDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPDV 191 (265)
T ss_pred HHHHHHHHHHHHC-CCeEEEEE--EeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCC
Confidence 4556666666653 44444432 01111 22 35677888999999999987 45677777777766643 2
Q ss_pred CeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc
Q 021527 194 ELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES 248 (311)
Q Consensus 194 ~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~ 248 (311)
.+-+-...+.--.-...++....|..++-+..+.-|.+.+. ..+++++..++..
T Consensus 192 ~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn-~~~e~~~~~l~~~ 245 (265)
T cd03174 192 PLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGN-AATEDLVAALEGL 245 (265)
T ss_pred eEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccccccC-ccHHHHHHHHHhc
Confidence 22222332222233334555567877774433444555443 3456666666553
No 417
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=96.34 E-value=0.71 Score=42.68 Aligned_cols=176 Identities=19% Similarity=0.253 Sum_probs=113.0
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
.+||. ++.+...+++|||.|=+= |--|---||. + .+..+++..+.|+-+-++.+
T Consensus 19 ~~Pd~---v~aA~~a~~aGAdgITvH-----lReDrRHI~d------------~----Dv~~l~~~~~~~lNlE~a~~-- 72 (237)
T TIGR00559 19 NEPDP---LRAALIAEQAGADGITVH-----LREDRRHIQD------------R----DVYDLKEALTTPFNIEMAPT-- 72 (237)
T ss_pred CCCCH---HHHHHHHHHcCCCEEEec-----CCCCcCcCCH------------H----HHHHHHHHcCCCEEeccCCC--
Confidence 35654 677788888999999883 4445444443 2 44455555667887877654
Q ss_pred hccCHHHHHHHHHHcCCcEE-EecCCCh--------------hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 152 LKRGVDNFMSTVRDIGIRGL-VVPDVPL--------------EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGv-iipDlp~--------------ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
++|++.+.+.--+-+ ++||-+- +....+.+.+++.||.+.+|+.|. .+.++...+.
T Consensus 73 -----~emi~ia~~vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~--~~qi~~A~~~-- 143 (237)
T TIGR00559 73 -----EEMIRIAEEIKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDAD--KDQISAAAEV-- 143 (237)
T ss_pred -----HHHHHHHHHcCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHh--
Confidence 789999988877655 4566442 225667888899999999999997 4555544443
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhc------CCCcEEEeeCCCCHHHHHHHHHc-C-CcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKES------STKPVAVGFGISKPEHVQQVAGW-G-ADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~------~~~Pv~vGfGIst~e~v~~v~~~-G-ADGvIVGSaiv~ 284 (311)
|..++.-.+|....... .....+.+++++.. .++-|-+|-|.+ .+++..+... + -+-+-||-+|+.
T Consensus 144 GAd~VELhTG~YA~a~~-~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLn-y~Nv~~i~~~~~~i~EvnIGHsiia 217 (237)
T TIGR00559 144 GADRIEIHTGPYANAYN-KKEMAEELQRIVKASVHAHSLGLKVNAGHGLN-YHNVKYFAEILPYLDELNIGHAIIA 217 (237)
T ss_pred CcCEEEEechhhhcCCC-chhHHHHHHHHHHHHHHHHHcCCEEecCCCCC-HHhHHHHHhCCCCceEEecCHHHHH
Confidence 43344333343322111 11112235555442 367899999997 7999888655 3 577999988775
No 418
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=96.33 E-value=0.86 Score=42.02 Aligned_cols=176 Identities=15% Similarity=0.123 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
+...+-...|.+-|...+-|-- -+||-.+ +-+.++.+.+++++++++.-+..-+ |.
T Consensus 42 ~~l~k~~~el~kkGy~g~llSG-Gm~srg~---------------VPl~kf~d~lK~lke~~~l~inaHv--------Gf 97 (275)
T COG1856 42 KSLLKRCMELEKKGYEGCLLSG-GMDSRGK---------------VPLWKFKDELKALKERTGLLINAHV--------GF 97 (275)
T ss_pred HHHHHHHHHHHhcCceeEEEeC-CcCCCCC---------------ccHHHHHHHHHHHHHhhCeEEEEEe--------ee
Confidence 4455666677888888877720 1333222 4567889999999998775544432 22
Q ss_pred --HHHHHHHHHcCCcEEEe---cC---------C--ChhhHHHHHHHHHHcCCCeEEEeCCC-------ChHHHHHHHHH
Q 021527 157 --DNFMSTVRDIGIRGLVV---PD---------V--PLEETESLQKEAMKNKIELVLFTTPT-------TPTDRMKAIVE 213 (311)
Q Consensus 157 --~~fi~~~~~aGadGvii---pD---------l--p~ee~~~~~~~~~~~gi~~I~lisp~-------t~~eri~~i~~ 213 (311)
|..++.+++.++|.+.+ .| + ..|...+....++++|+..++-++-. -..+.+.-+++
T Consensus 98 vdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~ 177 (275)
T COG1856 98 VDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVN 177 (275)
T ss_pred ccHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhc
Confidence 67889999999998876 22 1 12344455667889999888765421 11244555555
Q ss_pred hCCceEEEEecCCccCCC--CCCCchHHHHHH---HHhhcCCCcEEEe----eCCCCHHHHHHHHHcCCcEE
Q 021527 214 ASEGFVYLVSSIGVTGAR--ASISGHVQTLLR---EIKESSTKPVAVG----FGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 214 ~a~gfiY~vs~~G~TG~~--~~~~~~~~~~l~---~vk~~~~~Pv~vG----fGIst~e~v~~v~~~GADGv 276 (311)
.....+-++-...+.|++ ...|+++++.++ ..|+.+..||..| +|=..-+-=+....+|.|++
T Consensus 178 ~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~pv~iGCmrP~Ge~rvk~d~~av~~gVd~I 249 (275)
T COG1856 178 YEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPNPVSIGCMRPRGEWRVKLDKEAVLAGVDRI 249 (275)
T ss_pred CCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCCCeeEeecCcCchhHHHHHHHHHHcCCcee
Confidence 555555444344455543 334556665554 4566666688887 56655444455667788876
No 419
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=96.33 E-value=0.16 Score=47.39 Aligned_cols=191 Identities=16% Similarity=0.200 Sum_probs=107.9
Q ss_pred HHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 57 LKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 57 ~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
+++++....|+|+++-+-+...+.+++..+.+.|++-|-+ |=|. ..|..-+ + .+....+..++++.+
T Consensus 53 l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~----~~~~~~~-----~--~~~~~~~a~~Li~~i 121 (274)
T cd00537 53 ILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPP----KGGDQPG-----A--KPVGFVYAVDLVELI 121 (274)
T ss_pred HHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCC----CCCCCCC-----C--CCCCCCCHHHHHHHH
Confidence 3344456789999999999999999999999999996555 5333 2221000 0 001111223455555
Q ss_pred hcc--CCCcEEEEecC--cchhccCHHHHHHH---HHHcCCcEEEec-CCChhhHHHHHHHHHHcCC--CeEEEeCCCCh
Q 021527 135 VPQ--MSCPIALFTYY--NPILKRGVDNFMST---VRDIGIRGLVVP-DVPLEETESLQKEAMKNKI--ELVLFTTPTTP 204 (311)
Q Consensus 135 r~~--~~iPiilm~Y~--n~i~~~g~~~fi~~---~~~aGadGviip-Dlp~ee~~~~~~~~~~~gi--~~I~lisp~t~ 204 (311)
+.. ....+.+-+|- ||-.. ..+.-++. =.++||+-++-- =...+...++.+.+++.|+ .+++-+.|-++
T Consensus 122 ~~~~~~~~~igva~yPe~hp~~~-~~~~~~~~L~~Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~vPIi~GI~p~~s 200 (274)
T cd00537 122 RKENGGGFSIGVAAYPEGHPEAP-SLEEDIKRLKRKVDAGADFIITQLFFDNDAFLRFVDRCRAAGITVPIIPGIMPLTS 200 (274)
T ss_pred HHhcCCCCccccccCCCcCCCCC-CHHHHHHHHHHHHHCCCCEEeecccccHHHHHHHHHHHHHcCCCCCEEeeccccCC
Confidence 542 23345555554 22211 23333332 245799886552 2223567789999999984 56666778777
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCC---cEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTK---PVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~---Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
...++.+.+.. |+ .+|..+ ++++.+..+. ..-.|.-+. .+.++++.+.|++|+=+
T Consensus 201 ~~~l~~~~~~~----------Gv-----~vP~~~---~~~l~~~~~~~~~~~~~g~~~~-~~l~~~l~~~~~~giH~ 258 (274)
T cd00537 201 YKQAKRFAKLC----------GV-----EIPDWL---LERLEKLKDDAEAVRAEGIEIA-AELCDELLEHGVPGIHF 258 (274)
T ss_pred HHHHHHHHHhh----------CC-----CCCHHH---HHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHcCCCEEEE
Confidence 77766664422 22 345544 4444322111 122233333 57788888778999833
No 420
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=96.31 E-value=0.48 Score=48.40 Aligned_cols=169 Identities=14% Similarity=0.188 Sum_probs=94.5
Q ss_pred HHHHHHcCCcc-EEEEE----eCCCCChh--hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 54 FTRLKKQGKVA-LIPYI----TAGDPDLS--TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 54 f~~~~~~~~~~-li~yi----~~G~P~~~--~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
+..+++..++. |..++ ..||-.+. ...++++...++|+|++.+..|.+|. ..++.+
T Consensus 67 lr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv----~nl~~a------------- 129 (499)
T PRK12330 67 LRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP----RNLEHA------------- 129 (499)
T ss_pred HHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChH----HHHHHH-------------
Confidence 33444433343 44444 56776653 57778899999999999997666553 332222
Q ss_pred HHHHHHHhhccCCCcEEEEecC-cchhccCHH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc---CCCe
Q 021527 127 ILSMLKEVVPQMSCPIALFTYY-NPILKRGVD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN---KIEL 195 (311)
Q Consensus 127 ~~~~i~~ir~~~~iPiilm~Y~-n~i~~~g~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~---gi~~ 195 (311)
++.+++.... -....+|. ++.+ ..+ ++++.+.+.|+|.+.+.| +.+++..++...+++. ++.+
T Consensus 130 -i~~vk~ag~~---~~~~i~yt~sp~~--t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI 203 (499)
T PRK12330 130 -MKAVKKVGKH---AQGTICYTVSPIH--TVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRI 203 (499)
T ss_pred -HHHHHHhCCe---EEEEEEEecCCCC--CHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeE
Confidence 2333333222 11222331 2332 233 455678889999999998 5578888888888775 3443
Q ss_pred EEEeCCCChHHHHHHHHHhCCceEEE-EecCCccCCCCCCCchHHHHHHHHhh
Q 021527 196 VLFTTPTTPTDRMKAIVEASEGFVYL-VSSIGVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 196 I~lisp~t~~eri~~i~~~a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
-+-...+.--.-...++....|..++ .+..|. |.+++ ++.+++++.-++.
T Consensus 204 ~~H~Hnt~GlA~An~laAieAGad~vDtai~Gl-g~~aG-n~atE~vv~~L~~ 254 (499)
T PRK12330 204 NLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSM-SLGPG-HNPTESLVEMLEG 254 (499)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCCEEEeecccc-ccccc-chhHHHHHHHHHh
Confidence 33344333333334444555676666 344443 33333 2445666666654
No 421
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=96.31 E-value=0.79 Score=42.44 Aligned_cols=196 Identities=22% Similarity=0.308 Sum_probs=117.7
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHH
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSML 131 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i 131 (311)
+.|+..-++|+..+-.+....+| -.++.+..+|.|++-|+... .+.+.+.++..+
T Consensus 6 n~fK~~L~~g~~qiGlw~~l~~p------~~~Ei~A~aGfDwl~iD~EH-------------------apnd~~sl~~qL 60 (255)
T COG3836 6 NSFKAALAAGRPQIGLWLSLPDP------YMAEILATAGFDWLLIDGEH-------------------APNDLQSLLHQL 60 (255)
T ss_pred chHHHHHhCCCceEEeeecCCcH------HHHHHHHhcCCCEEEecccc-------------------cCccHHHHHHHH
Confidence 34444444677766667766666 45566778999999996222 235566777788
Q ss_pred HHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEecCCCh-hhHHHHHHHH----------------------
Q 021527 132 KEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL-EETESLQKEA---------------------- 188 (311)
Q Consensus 132 ~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~-ee~~~~~~~~---------------------- 188 (311)
+.+...-.-|++=-. .|-...++++.+.|+.++++|-+-- |+++++....
T Consensus 61 ~a~~~~~~~pvVR~p-------~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~ 133 (255)
T COG3836 61 QAVAAYASPPVVRPP-------VGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGR 133 (255)
T ss_pred HHhhccCCCCeeeCC-------CCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCC
Confidence 888776667766422 2445678899999999999985532 3444444332
Q ss_pred -----HHcCCCeEEEeCCCChH--HHHHHHHHhCCce--EEEE-----ecCCccCCCCCCCchHHHHHHHHhhcC---CC
Q 021527 189 -----MKNKIELVLFTTPTTPT--DRMKAIVEASEGF--VYLV-----SSIGVTGARASISGHVQTLLREIKESS---TK 251 (311)
Q Consensus 189 -----~~~gi~~I~lisp~t~~--eri~~i~~~a~gf--iY~v-----s~~G~TG~~~~~~~~~~~~l~~vk~~~---~~ 251 (311)
...+=+...++.-.|.+ +.+..|+.. +|. |++. ..+|..|.. -.+++.+-|+++-..+ ++
T Consensus 134 i~dyl~~An~~~~~lvqiEtr~gl~nLDaIaav-eGVDgvFiGPaDLaas~G~~gn~--~hpeV~~aI~~~~~~i~aaGK 210 (255)
T COG3836 134 IADYLAQANDEICLLVQIETRAGLDNLDAIAAV-EGVDGVFIGPADLAASLGHLGNP--GHPEVQAAIEHIIARIRAAGK 210 (255)
T ss_pred HHHHHHhcccceEEEEEEccHHHHHHHHHHHcc-CCCCeEEECHHHHHHHcCCCCCC--CCHHHHHHHHHHHHHHHhcCC
Confidence 11222222333333332 445556443 332 4442 356666653 2345555555543321 22
Q ss_pred cEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 252 PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 252 Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
. .|+=-.+++.+++.+++|+.=|+||+-...
T Consensus 211 a--agil~~~p~~a~~yl~lGa~fvavG~D~~l 241 (255)
T COG3836 211 A--AGILAADPADARRYLALGATFVAVGSDTGL 241 (255)
T ss_pred c--cccccCCHHHHHHHHHhCCeEEEEeccHHH
Confidence 2 333346899999999999999999975544
No 422
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.31 E-value=0.07 Score=51.05 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCC-hhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPD-LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~-~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
.+.+..+.+++.=...+...+..|+.+ ...+.++++.|+++|+|.|.+..-..+....|+ -.
T Consensus 118 ~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~-----------------~~ 180 (319)
T TIGR00737 118 LIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGE-----------------AN 180 (319)
T ss_pred HHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCc-----------------hh
Confidence 355566666544335677778778644 346789999999999999998422111111221 12
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
++.++++++.+++||+..|-.+ ..++..+.+.+.|+|+|.+.
T Consensus 181 ~~~i~~i~~~~~ipvi~nGgI~-----~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 181 WDIIARVKQAVRIPVIGNGDIF-----SPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred HHHHHHHHHcCCCcEEEeCCCC-----CHHHHHHHHHhhCCCEEEEC
Confidence 5688899998999999876332 23455555557899999995
No 423
>PLN02411 12-oxophytodienoate reductase
Probab=96.30 E-value=0.14 Score=50.69 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=38.3
Q ss_pred HHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcC-CcEEEEhhHhhc
Q 021527 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWG-ADGVIVGSAMVK 284 (311)
Q Consensus 240 ~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~G-ADGvIVGSaiv~ 284 (311)
.+.+++|+.+++||++.+|| +++++.++++.| ||.|-+|=+++.
T Consensus 303 ~~a~~ik~~v~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 303 QLMRTLRRAYQGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred HHHHHHHHHcCCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 45688999889999999999 579999999988 899999988765
No 424
>PLN02858 fructose-bisphosphate aldolase
Probab=96.30 E-value=0.98 Score=51.64 Aligned_cols=206 Identities=16% Similarity=0.158 Sum_probs=135.9
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+.++..+++ +-++..|= -.|++...-++++.++.+..+|---.|....+. ..+ +..
T Consensus 1102 ~~~~l~~A~~~-~yav~afn---~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~-----------------~~~-~~~ 1159 (1378)
T PLN02858 1102 TKELLLNAEKG-GYAVGAFN---VYNLEGIEAVVAAAEAEKSPAILQVHPGALKQG-----------------GIP-LVS 1159 (1378)
T ss_pred HHHHHHHHHHC-CcEEEEEE---eCCHHHHHHHHHHHHHhCCCEEEECCccHHhhc-----------------CHH-HHH
Confidence 56666665544 44555555 348899999999999999998876533322211 122 455
Q ss_pred HHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCCChhh----HHHHHHHHHHcCCCeEE---Ee-
Q 021527 130 MLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDVPLEE----TESLQKEAMKNKIELVL---FT- 199 (311)
Q Consensus 130 ~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDlp~ee----~~~~~~~~~~~gi~~I~---li- 199 (311)
+++...++.++||.+.. + +..-.+++..+.+.|.+.|.+ ..+|+|| ..++.+.++.+|+.+=- -+
T Consensus 1160 ~~~~~a~~~~vpV~lHL--D---Hg~~~~~i~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~ 1234 (1378)
T PLN02858 1160 CCIAAAEQASVPITVHF--D---HGTSKHELLEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLS 1234 (1378)
T ss_pred HHHHHHHHCCCCEEEEC--C---CCCCHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccC
Confidence 66666777899999852 2 222357899999999999988 4788887 56788888888873210 01
Q ss_pred ------------CCCChHHHHHHHHHhCCceEEE-E---ecCCccCC-CCCCCchHHHHHHHHhhcC---CCcEEE--ee
Q 021527 200 ------------TPTTPTDRMKAIVEASEGFVYL-V---SSIGVTGA-RASISGHVQTLLREIKESS---TKPVAV--GF 257 (311)
Q Consensus 200 ------------sp~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~-~~~~~~~~~~~l~~vk~~~---~~Pv~v--Gf 257 (311)
..-|.++..++..+. .|...+ + +..|.+-. ...++ .+.++++++.+ ++|++. |.
T Consensus 1235 g~e~~~~~~~~~~~~T~p~~a~~Fv~~-TgvD~LAvaiGt~HG~Y~~~~p~l~---~~~l~~i~~~~~~~~vpLVlHGgS 1310 (1378)
T PLN02858 1235 GTEDGLTVEEYEAKLTDVDQAKEFIDE-TGIDALAVCIGNVHGKYPASGPNLR---LDLLKELRALSSKKGVLLVLHGAS 1310 (1378)
T ss_pred CccCCccccccccCCCCHHHHHHHHHh-cCCcEEeeecccccccCCCCCCccC---HHHHHHHHHHhcCCCCcEEEeCCC
Confidence 002334555556554 344444 3 34443321 12232 36788998887 799866 77
Q ss_pred CCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 258 GISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 258 GIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
|+. .|++++..+.|.-=|=|+|.+.....
T Consensus 1311 G~~-~~~~~~ai~~Gi~KiNi~T~~~~a~~ 1339 (1378)
T PLN02858 1311 GLP-ESLIKECIENGVRKFNVNTEVRTAYM 1339 (1378)
T ss_pred CCC-HHHHHHHHHcCCeEEEeCHHHHHHHH
Confidence 886 79999999999999999998866543
No 425
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=96.29 E-value=0.84 Score=43.74 Aligned_cols=155 Identities=18% Similarity=0.311 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCCC-CCCCC------ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEe--
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVPY-SDPLA------DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFT-- 146 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~Pf-sDP~a------DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~-- 146 (311)
+...+.++.+.+.|+..+-| |+|- .|+.. ||++. +.++.+|+.+. -+++++
T Consensus 51 d~l~~~~~~~~~~Gi~~v~LFgv~~~Kd~~gs~A~~~~g~v~------------------~air~iK~~~p-~l~vi~Dv 111 (314)
T cd00384 51 DSLVEEAEELADLGIRAVILFGIPEHKDEIGSEAYDPDGIVQ------------------RAIRAIKEAVP-ELVVITDV 111 (314)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCcccccCCCChHH------------------HHHHHHHHhCC-CcEEEEee
Confidence 57899999999999998776 7763 23332 34322 24555565531 133332
Q ss_pred ----cCc----chhccC-------HHHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC--------
Q 021527 147 ----YYN----PILKRG-------VDNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT-------- 200 (311)
Q Consensus 147 ----Y~n----~i~~~g-------~~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis-------- 200 (311)
|.. .+...| ++...+. .+++|+|-|--.|+=.......++.+.++|...+..++
T Consensus 112 cLc~YT~hGHcGil~~~~idND~Tl~~L~k~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImsYsaKyaSa 191 (314)
T cd00384 112 CLCEYTDHGHCGILKDDYVDNDATLELLAKIAVSHAEAGADIVAPSDMMDGRVAAIREALDEAGFSDVPIMSYSAKYASA 191 (314)
T ss_pred eccCCCCCCcceeccCCcCccHHHHHHHHHHHHHHHHcCCCeeecccccccHHHHHHHHHHHCCCCCCceeecHHHhhhh
Confidence 211 111111 1223332 36799999766677666778889999999996665432
Q ss_pred ------------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE
Q 021527 201 ------------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV 255 (311)
Q Consensus 201 ------------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v 255 (311)
|....|-+++... ..+|...++=.- .+ ...+.|+++|+.+++|++
T Consensus 192 fYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~EGAD~lMVKP-------al--~YLDIi~~~k~~~~~Pva- 261 (314)
T cd00384 192 FYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEEGADILMVKP-------AL--AYLDIIRDVRERFDLPVA- 261 (314)
T ss_pred ccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcC-------Cc--hHHHHHHHHHHhcCCCEE-
Confidence 2222344444332 356766554111 11 256889999999999994
Q ss_pred eeCCC
Q 021527 256 GFGIS 260 (311)
Q Consensus 256 GfGIs 260 (311)
..-||
T Consensus 262 aYqVS 266 (314)
T cd00384 262 AYNVS 266 (314)
T ss_pred EEEcc
Confidence 44443
No 426
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=96.29 E-value=0.74 Score=43.52 Aligned_cols=155 Identities=15% Similarity=0.235 Sum_probs=90.5
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh----hcc-CCCcEEEEecCcchhccC
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV----VPQ-MSCPIALFTYYNPILKRG 155 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i----r~~-~~iPiilm~Y~n~i~~~g 155 (311)
+.++...++|++.|.+.+|-||. .++ ...+.+.++.++.++++ ++. ..+-+.++...++. +..
T Consensus 78 ~~~~~A~~~g~~~i~i~~~~S~~-----h~~------~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-r~~ 145 (280)
T cd07945 78 KSVDWIKSAGAKVLNLLTKGSLK-----HCT------EQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-RDS 145 (280)
T ss_pred HHHHHHHHCCCCEEEEEEeCCHH-----HHH------HHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-cCC
Confidence 45777788999999999988863 111 12345666666655554 332 33445555433332 334
Q ss_pred HH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc--CCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCC
Q 021527 156 VD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN--KIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226 (311)
Q Consensus 156 ~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~--gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G 226 (311)
.+ ++++.+.+.|++.+.++| +.+++..++...+++. ++.+-+-...+.--.-...++....|.-++-+..+
T Consensus 146 ~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~ 225 (280)
T cd07945 146 PDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVN 225 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 43 455667889999999998 4567788887777653 23333333333333334445555677777744444
Q ss_pred ccCCCCCCCchHHHHHHHHhhc
Q 021527 227 VTGARASISGHVQTLLREIKES 248 (311)
Q Consensus 227 ~TG~~~~~~~~~~~~l~~vk~~ 248 (311)
.-|.+.+. ..+++++.-++..
T Consensus 226 GlGe~aGN-~~~E~~v~~L~~~ 246 (280)
T cd07945 226 GLGERAGN-APLASVIAVLKDK 246 (280)
T ss_pred cccccccC-ccHHHHHHHHHHh
Confidence 45555443 3456666666543
No 427
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=96.28 E-value=0.72 Score=42.85 Aligned_cols=156 Identities=12% Similarity=0.134 Sum_probs=87.8
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCc
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCP 141 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iP 141 (311)
..+..++.++.++. +.++...++|+|.+-+.+|.|| -+. +.+.++..++. ..+-
T Consensus 75 ~~~~~~~~~~~~~~----~~i~~a~~~g~~~iri~~~~s~----~~~-----------------~~~~i~~ak~~G~~v~ 129 (263)
T cd07943 75 AKLGVLLLPGIGTV----DDLKMAADLGVDVVRVATHCTE----ADV-----------------SEQHIGAARKLGMDVV 129 (263)
T ss_pred CEEEEEecCCccCH----HHHHHHHHcCCCEEEEEechhh----HHH-----------------HHHHHHHHHHCCCeEE
Confidence 34555666677763 5567778899999999877765 222 23344444443 2222
Q ss_pred EEEE-ecC-cchhccCHHHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CC-CeEEEeCCCChHHHHHHHHH
Q 021527 142 IALF-TYY-NPILKRGVDNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KI-ELVLFTTPTTPTDRMKAIVE 213 (311)
Q Consensus 142 iilm-~Y~-n~i~~~g~~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi-~~I~lisp~t~~eri~~i~~ 213 (311)
+.++ +|. ++- -+.++++.+.++|+|.+.++| +.+++..++.+.++++ +. .+-+-...+.--.-...++.
T Consensus 130 ~~~~~~~~~~~~---~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laA 206 (263)
T cd07943 130 GFLMMSHMASPE---ELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAA 206 (263)
T ss_pred EEEEeccCCCHH---HHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHH
Confidence 2222 222 221 134566788899999999998 5678888888887764 32 22222332222222333444
Q ss_pred hCCceEEEEecCCccCCCCCCCchHHHHHHHHhh
Q 021527 214 ASEGFVYLVSSIGVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 214 ~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
...|..++-+..+.-|.+.+. ..+++++.-++.
T Consensus 207 i~aGa~~vd~s~~GlG~~aGN-~~~E~lv~~L~~ 239 (263)
T cd07943 207 VEAGATRIDGSLAGLGAGAGN-TPLEVLVAVLER 239 (263)
T ss_pred HHhCCCEEEeecccccCCcCC-ccHHHHHHHHHh
Confidence 456887774333334555443 335555655543
No 428
>PRK15492 triosephosphate isomerase; Provisional
Probab=96.27 E-value=0.069 Score=50.08 Aligned_cols=123 Identities=16% Similarity=0.224 Sum_probs=70.0
Q ss_pred HHHHHHHcCCcEEEecC----CChhhHHH----HHHHHHHcCCCeEEEeCCCChHHHHH------------HHHHh-C-C
Q 021527 159 FMSTVRDIGIRGLVVPD----VPLEETES----LQKEAMKNKIELVLFTTPTTPTDRMK------------AIVEA-S-E 216 (311)
Q Consensus 159 fi~~~~~aGadGviipD----lp~ee~~~----~~~~~~~~gi~~I~lisp~t~~eri~------------~i~~~-a-~ 216 (311)
-...++++|++.+++.. ..+.|..+ -...+.++|+.+|+-+.- +.++|-. ...+. . .
T Consensus 86 Sa~mLkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE-~~e~r~~g~~~~v~~~Ql~~~l~~~~~~ 164 (260)
T PRK15492 86 SPLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGE-TLEQKNYGISDEILRTQLKIGLHGINPD 164 (260)
T ss_pred CHHHHHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCC-cHHHHHcCCHHHHHHHHHHHHHhcCCHh
Confidence 45678889999999863 11233322 455678889988876664 3333321 11110 1 1
Q ss_pred ---ce-EEEEe--cCCccCCCCCCCchHHHHHHHHhhc---------CCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhh
Q 021527 217 ---GF-VYLVS--SIGVTGARASISGHVQTLLREIKES---------STKPVAVGFGISKPEHVQQVAGW-GADGVIVGS 280 (311)
Q Consensus 217 ---gf-iY~vs--~~G~TG~~~~~~~~~~~~l~~vk~~---------~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGS 280 (311)
.. |-|.+ ..| ||.+...++...+..+.+|+. .+++|+.|++|+ |+++.+++.. ..||+.||.
T Consensus 165 ~~~~iiIAYEPvWAIG-tgg~~as~e~~~~~~~~Ir~~l~~~~~~~~~~irILYGGSV~-~~N~~~l~~~~diDG~LvG~ 242 (260)
T PRK15492 165 QLAKLRIAYEPVWAIG-EAGIPASADYADEKHAVIKQCLIELFGDAGDDIPVFYGGSVN-AENANELFGQPHIDGLFIGR 242 (260)
T ss_pred hcCceEEEECChHHhC-CCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEcCccC-HHHHHHHhcCCCCCEEEeeh
Confidence 11 22222 234 333323333333333333332 157999999997 8999998644 379999998
Q ss_pred Hhhc
Q 021527 281 AMVK 284 (311)
Q Consensus 281 aiv~ 284 (311)
+=.+
T Consensus 243 aSl~ 246 (260)
T PRK15492 243 SAWD 246 (260)
T ss_pred hhcC
Confidence 8665
No 429
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=96.25 E-value=0.34 Score=44.73 Aligned_cols=159 Identities=14% Similarity=0.166 Sum_probs=88.3
Q ss_pred eCCCCCh--hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEe
Q 021527 70 TAGDPDL--STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFT 146 (311)
Q Consensus 70 ~~G~P~~--~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~ 146 (311)
+.||-.. ......+......|+|+|-+|+.-.. ..+++.. ..-..++.+++. .+..++.-.
T Consensus 58 tiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~------~~~~a~e----------~l~~v~~av~~~~~~~~vVAv~ 121 (235)
T PF04476_consen 58 TIGDLPMKPGTASLAALGAAATGVDYVKVGLFGCK------DYDEAIE----------ALEAVVRAVKDFDPDKKVVAVG 121 (235)
T ss_pred EecCCCCCchHHHHHHHHHHhcCCCEEEEecCCCC------CHHHHHH----------HHHHHHHHHhhhCCCcEEEEEE
Confidence 4455322 34444555566789999999955322 1222210 011122334432 234455555
Q ss_pred cCcc--hhccCHHHHHHHHHHcCCcEEEec----------C-CChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHH
Q 021527 147 YYNP--ILKRGVDNFMSTVRDIGIRGLVVP----------D-VPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVE 213 (311)
Q Consensus 147 Y~n~--i~~~g~~~fi~~~~~aGadGviip----------D-lp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~ 213 (311)
|.+- +-.....+..+.++++|++|+.+= | ++.++..+|.+.++++|+..-+- -.-..+.+..+..
T Consensus 122 yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aLA--GSL~~~di~~L~~ 199 (235)
T PF04476_consen 122 YADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMCALA--GSLRFEDIPRLKR 199 (235)
T ss_pred ecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchhhcc--ccCChhHHHHHHh
Confidence 6552 111233456678899999999882 2 55678999999999999864332 2233455666666
Q ss_pred hCCceEEEEecCCccCCCC--CCCchHHHHHHHHhhcC
Q 021527 214 ASEGFVYLVSSIGVTGARA--SISGHVQTLLREIKESS 249 (311)
Q Consensus 214 ~a~gfiY~vs~~G~TG~~~--~~~~~~~~~l~~vk~~~ 249 (311)
....|+=+-+.....|.|+ .+++ +.++++|+..
T Consensus 200 l~pD~lGfRGAvC~ggdR~~G~id~---~~V~~lr~~~ 234 (235)
T PF04476_consen 200 LGPDILGFRGAVCGGGDRRAGRIDP---ELVAALRALM 234 (235)
T ss_pred cCCCEEEechhhCCCCCcCccccCH---HHHHHHHHhc
Confidence 6666654433333333443 2554 5677776643
No 430
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=96.25 E-value=0.2 Score=45.85 Aligned_cols=193 Identities=24% Similarity=0.376 Sum_probs=106.0
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCC---ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEEecC-cchhccC
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLA---DGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYY-NPILKRG 155 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~a---DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm~Y~-n~i~~~g 155 (311)
-.++.-+.+|+|.|-+= .+--|- .|.. .--|..|-+-+-++++.+++-.. -++||..-... +|+-+
T Consensus 32 lsAkaeeagg~d~i~~~--nsgr~r~ag~~Sl-----~gLLa~~naN~~vld~a~e~lp~~r~tpv~aGv~~~DPf~~-- 102 (276)
T COG5564 32 LSAKAEEAGGIDLIYIY--NSGRYRMAGRGSL-----AGLLAYGNANDIVLDMAREVLPVVRQTPVLAGVNGTDPFCR-- 102 (276)
T ss_pred hhhhhhhcCCceEEEEe--cCccccccccchh-----hhhhhccCccHHHHHHHHhhCCccccCcceecccCCCcchh--
Confidence 34566677899998871 111000 1111 00234444444556777776543 35776554322 34433
Q ss_pred HHHHHHHHHHcCCcEEEe-c-----C----CChhh-------HHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCce
Q 021527 156 VDNFMSTVRDIGIRGLVV-P-----D----VPLEE-------TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218 (311)
Q Consensus 156 ~~~fi~~~~~aGadGvii-p-----D----lp~ee-------~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gf 218 (311)
...|++.++.+|..||.. | | ..+|| -.++..++.+.++-...++ .+..+. .+..+ .|.
T Consensus 103 ~~~~L~~L~~~gf~gV~NFPTv~~iDG~~R~~lEetGmG~~~Evemlr~A~~k~l~t~~yV--~s~~eA-qa~~~--aGa 177 (276)
T COG5564 103 MVDFLKELKTAGFSGVQNFPTVGLIDGRMRASLEETGMGYGLEVEMLREAHAKDLLTTPYV--FSFEEA-QAMTK--AGA 177 (276)
T ss_pred HHHHHHHHHhcCCcccccCCeeEEecchhhhhHHHhCcchHHHHHHHHHHHhcccccccee--cCHHHH-HHHHH--cCc
Confidence 478999999999998754 2 2 11233 1223444444454333333 233332 22323 455
Q ss_pred EEEEecCC-----ccCCCCCCC-chHHHHHHHH----hhcCC--CcEEEeeCCCCHHHHHHHHHc--CCcEEEEhhHhhc
Q 021527 219 VYLVSSIG-----VTGARASIS-GHVQTLLREI----KESST--KPVAVGFGISKPEHVQQVAGW--GADGVIVGSAMVK 284 (311)
Q Consensus 219 iY~vs~~G-----~TG~~~~~~-~~~~~~l~~v----k~~~~--~Pv~vGfGIst~e~v~~v~~~--GADGvIVGSaiv~ 284 (311)
..++..+| .-|.+..+. .+..++++.+ |...+ +|++.|+=|++|||..-+++. |+||.+=+|.+-|
T Consensus 178 diiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~kd~i~l~~GGPi~~p~da~yi~d~c~~~~gfygassmer 257 (276)
T COG5564 178 DIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVRKDVIPLCHGGPISMPEDARYILDRCPGCDGFYGASSMER 257 (276)
T ss_pred ceeeecccccccceeccccccCHHHHHHHHHHHHHHHhhhhhceeeeccCCCcCCchhhHHHHhhCCCCCcccccchhhc
Confidence 55555555 233444432 2233444433 33333 799999999999999888764 6899999999988
Q ss_pred hhh
Q 021527 285 LLG 287 (311)
Q Consensus 285 ~~~ 287 (311)
.-.
T Consensus 258 lp~ 260 (276)
T COG5564 258 LPA 260 (276)
T ss_pred cch
Confidence 654
No 431
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=96.25 E-value=0.13 Score=50.00 Aligned_cols=99 Identities=17% Similarity=0.292 Sum_probs=76.0
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
..-|.+.+++.++.|.++|+|++=+-+|-.+ --+.+++|+++.++|++....||
T Consensus 37 ~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~------------------------~a~al~~I~~~~~iPlvADIHFd-- 90 (360)
T PRK00366 37 DTADVEATVAQIKRLARAGCEIVRVAVPDME------------------------AAAALPEIKKQLPVPLVADIHFD-- 90 (360)
T ss_pred CchhHHHHHHHHHHHHHcCCCEEEEccCCHH------------------------HHHhHHHHHHcCCCCEEEecCCC--
Confidence 3456688999999999999999999866511 12477888989999999988887
Q ss_pred hccCHHHHHHHHHHcCCcEEEec--CCCh--hhHHHHHHHHHHcCCCeEEEeCC
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVP--DVPL--EETESLQKEAMKNKIELVLFTTP 201 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviip--Dlp~--ee~~~~~~~~~~~gi~~I~lisp 201 (311)
-+..-.+.+.|+|.+=+. .+.- |...++.+.++++|+..=.-++-
T Consensus 91 -----~~lAl~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~ 139 (360)
T PRK00366 91 -----YRLALAAAEAGADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNA 139 (360)
T ss_pred -----HHHHHHHHHhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCC
Confidence 345567889999999773 3322 45778999999999976665543
No 432
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.24 E-value=0.064 Score=50.55 Aligned_cols=136 Identities=19% Similarity=0.166 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCCh----HHHHHHHHHHHHcCCC
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADG----PVIQAAATRSLARGTN 123 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDG----p~Iq~a~~~Al~~G~~ 123 (311)
..+.+.++.+++.-...+..=+. |+.+++.++++.++++|+|.|.+-+-+.....|. |.+... ..--.|..
T Consensus 140 ~~~~eiv~~vr~~~~~Pv~vKl~---~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~--~gg~sg~~ 214 (296)
T cd04740 140 EAVAEIVKAVKKATDVPVIVKLT---PNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNV--TGGLSGPA 214 (296)
T ss_pred HHHHHHHHHHHhccCCCEEEEeC---CCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCC--cceecCcc
Confidence 34666777776653333433343 5566788999999999999998732221111010 111000 00001111
Q ss_pred -HHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec-------CCChhhHHHHHHHHHHcCCC
Q 021527 124 -FNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP-------DVPLEETESLQKEAMKNKIE 194 (311)
Q Consensus 124 -~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip-------Dlp~ee~~~~~~~~~~~gi~ 194 (311)
..-.++.++++++.+++||+..+-.. . -+.+.++.++|+|+|-+. +++-+-...+.+.+.++|..
T Consensus 215 ~~~~~~~~i~~i~~~~~ipii~~GGI~-----~-~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g~~ 287 (296)
T cd04740 215 IKPIALRMVYQVYKAVEIPIIGVGGIA-----S-GEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGIK 287 (296)
T ss_pred cchHHHHHHHHHHHhcCCCEEEECCCC-----C-HHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHcCCC
Confidence 11235788889888899999876321 1 234555557999998873 33322234455556666654
No 433
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=96.24 E-value=0.22 Score=55.84 Aligned_cols=182 Identities=16% Similarity=0.187 Sum_probs=105.8
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
|++...+.++.+.+.|||+|-+|. ..|.-|+.. .+ +.++..+..+++.+++||.+.++-
T Consensus 382 d~~~al~~A~~qve~GA~iIDVn~--g~~~id~~e---em----------~rvv~~i~~~~~~~~vPlsIDS~~------ 440 (1229)
T PRK09490 382 DYDEALDVARQQVENGAQIIDINM--DEGMLDSEA---AM----------VRFLNLIASEPDIARVPIMIDSSK------ 440 (1229)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECC--CCCCCCHHH---HH----------HHHHHHHHhhhccCCceEEEeCCc------
Confidence 347889999999999999999994 223334321 11 233455555555578999998763
Q ss_pred CHHHHHHHHHHc--CCcEEEecCCChhh----HHHHHHHHHHcCCCeEEEeC-----CCChHHHHHHH---HHh--C-Cc
Q 021527 155 GVDNFMSTVRDI--GIRGLVVPDVPLEE----TESLQKEAMKNKIELVLFTT-----PTTPTDRMKAI---VEA--S-EG 217 (311)
Q Consensus 155 g~~~fi~~~~~a--GadGviipDlp~ee----~~~~~~~~~~~gi~~I~lis-----p~t~~eri~~i---~~~--a-~g 217 (311)
-+-++.+.++ |.+ ||.|...++ ..+..+.+++||..+|.+.. |.|.++|++.. .+. . .|
T Consensus 441 --~~ViEaaLk~~~G~~--IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~~~t~e~r~~ia~r~~~~~~~~~G 516 (1229)
T PRK09490 441 --WEVIEAGLKCIQGKG--IVNSISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQADTRERKIEICKRAYDILTEEVG 516 (1229)
T ss_pred --HHHHHHHHhhcCCCC--EEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 2345555554 654 466666532 44678889999999888764 66766666331 111 1 23
Q ss_pred ----eEEEEecCC--ccCCCCC--CCchHHHHHHHHhhcC-CCcEEEe-----eCCCCHHHHHHH---------HHcCCc
Q 021527 218 ----FVYLVSSIG--VTGARAS--ISGHVQTLLREIKESS-TKPVAVG-----FGISKPEHVQQV---------AGWGAD 274 (311)
Q Consensus 218 ----fiY~vs~~G--~TG~~~~--~~~~~~~~l~~vk~~~-~~Pv~vG-----fGIst~e~v~~v---------~~~GAD 274 (311)
-||+-.... .||.... ...+..+.++.+|+.. ++.+.+| ||...++.++++ ..+|-|
T Consensus 517 i~~~dIi~Dplv~~v~t~~ee~~~~~~~~leair~ik~~~P~~~~~~GlSNiSFgl~g~~~~R~~lns~FL~~a~~aGld 596 (1229)
T PRK09490 517 FPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQNLPHAKISGGVSNVSFSFRGNNPVREAIHAVFLYHAIKAGMD 596 (1229)
T ss_pred CCHHHEEEcCCcceeecChHHHHHHHHHHHHHHHHHHHHCCCCcEEEeeccccccCCCCCchHHHHHHHHHHHHHHcCcc
Confidence 355533222 2432211 1123345566666654 4557765 787322223333 577888
Q ss_pred EEEEhhH
Q 021527 275 GVIVGSA 281 (311)
Q Consensus 275 GvIVGSa 281 (311)
.+||=..
T Consensus 597 ~aIvnp~ 603 (1229)
T PRK09490 597 MGIVNAG 603 (1229)
T ss_pred hhhcCcc
Confidence 8777543
No 434
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=96.22 E-value=1 Score=43.26 Aligned_cols=154 Identities=15% Similarity=0.265 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCCC-CCCCC------ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc-EEEEe-
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVPY-SDPLA------DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP-IALFT- 146 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~Pf-sDP~a------DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP-iilm~- 146 (311)
+...+.++.+.+.|+..+-| |+|- .|+.. ||++.+ .|+.+|+.+ | +++++
T Consensus 61 d~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~~~g~v~~------------------air~iK~~~--pdl~vi~D 120 (322)
T PRK13384 61 SALADEIERLYALGIRYVMPFGISHHKDAKGSDTWDDNGLLAR------------------MVRTIKAAV--PEMMVIPD 120 (322)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccCCCChHHH------------------HHHHHHHHC--CCeEEEee
Confidence 46889999999999998876 7764 33332 343332 455566553 2 33332
Q ss_pred -----cCc----chhccC-H------HHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC-------
Q 021527 147 -----YYN----PILKRG-V------DNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT------- 200 (311)
Q Consensus 147 -----Y~n----~i~~~g-~------~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis------- 200 (311)
|.. .+...| + +...+. .+++|+|-|--.|.=.......++.+.++|+..+..++
T Consensus 121 VcLc~YT~hGHcGil~~g~i~ND~Tl~~L~~~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS 200 (322)
T PRK13384 121 ICFCEYTDHGHCGVLHNDEVDNDATVENLVKQSVTAAKAGADMLAPSAMMDGQVKAIRQGLDAAGFEHVAILAHSAKFAS 200 (322)
T ss_pred eecccCCCCCceeeccCCcCccHHHHHHHHHHHHHHHHcCCCeEecccccccHHHHHHHHHHHCCCCCCceeehhHhhhh
Confidence 211 111122 1 223332 36799999766687767788889999999996665433
Q ss_pred ------------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE
Q 021527 201 ------------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV 255 (311)
Q Consensus 201 ------------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v 255 (311)
|....|-+++... ..+|...++=.- .+ ...+.|+++|+.+++|+++
T Consensus 201 ~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~~EGAD~lMVKP-------al--~YLDIi~~~k~~~~lPvaa 271 (322)
T PRK13384 201 SFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDEAEGADILMVKP-------GT--PYLDVLSRLRQETHLPLAA 271 (322)
T ss_pred hhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhHhhCCCEEEEcC-------Cc--hHHHHHHHHHhccCCCEEE
Confidence 2222333433322 256666554111 11 2568899999999999954
Q ss_pred eeCCC
Q 021527 256 GFGIS 260 (311)
Q Consensus 256 GfGIs 260 (311)
.-||
T Consensus 272 -YqVS 275 (322)
T PRK13384 272 -YQVG 275 (322)
T ss_pred -EEch
Confidence 4443
No 435
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.22 E-value=0.49 Score=45.12 Aligned_cols=134 Identities=13% Similarity=0.139 Sum_probs=80.9
Q ss_pred HHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc---CCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG---VPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 51 ~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG---~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
-+..+++.+.-...++.=+-.||-+.....+.++.++++||-.|.|- .|-.--...|..+ +..++.
T Consensus 67 ~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~l-----------v~~ee~ 135 (292)
T PRK11320 67 LIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEI-----------VSQEEM 135 (292)
T ss_pred HHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcc-----------cCHHHH
Confidence 33333333333456777778899999999999999999999999993 1111111122111 233333
Q ss_pred HHHHHHhhc-cCCCcEEEEecCcchhccCHHHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEE
Q 021527 128 LSMLKEVVP-QMSCPIALFTYYNPILKRGVDNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL 197 (311)
Q Consensus 128 ~~~i~~ir~-~~~iPiilm~Y~n~i~~~g~~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~ 197 (311)
.+-|+..++ +.+.+++++.-.+.....|+++-+++ ..++|||++.++-+. ..++++..+++.+..++.
T Consensus 136 ~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~--~~~~i~~~~~~~~~Pl~~ 207 (292)
T PRK11320 136 VDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAMT--ELEMYRRFADAVKVPILA 207 (292)
T ss_pred HHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCCC--CHHHHHHHHHhcCCCEEE
Confidence 333333332 23567888765555556788888875 477999999888543 334455555555555433
No 436
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.21 E-value=0.13 Score=48.19 Aligned_cols=90 Identities=19% Similarity=0.277 Sum_probs=60.9
Q ss_pred CChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhc
Q 021527 74 PDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILK 153 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~ 153 (311)
.+.+.+.+.++.+.+.|+|+|||.+ +.|...+ .+. -+.+.+.+.++++++|+.+++|+.+-.-.+ ...
T Consensus 108 ~~~~~~~~~a~~~~~~G~d~ielN~--~cP~~~~-------~~~--~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~-~~~ 175 (289)
T cd02810 108 SSKEDYVELARKIERAGAKALELNL--SCPNVGG-------GRQ--LGQDPEAVANLLKAVKAAVDIPLLVKLSPY-FDL 175 (289)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEc--CCCCCCC-------Ccc--cccCHHHHHHHHHHHHHccCCCEEEEeCCC-CCH
Confidence 3668999999999999999999953 2332221 000 123455667889999988899988863211 000
Q ss_pred cCHHHHHHHHHHcCCcEEEecC
Q 021527 154 RGVDNFMSTVRDIGIRGLVVPD 175 (311)
Q Consensus 154 ~g~~~fi~~~~~aGadGviipD 175 (311)
-...++++.+.++|+|++.++.
T Consensus 176 ~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 176 EDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEEEc
Confidence 0235677888999999999863
No 437
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=96.18 E-value=0.82 Score=47.88 Aligned_cols=193 Identities=13% Similarity=0.143 Sum_probs=106.8
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH-HHHHHHHhhccCCCcEEEEecCcchhccCHH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA-ILSMLKEVVPQMSCPIALFTYYNPILKRGVD 157 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~-~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~ 157 (311)
..++++...+.|+|.+=+-+.-..| +-++.+. .-++++.+++..-.+|.++. | -..+
T Consensus 12 ~~eda~~a~~~gaD~iGfIf~~~Sp----------------R~V~~~~~a~~i~~~l~~~~v~~VgVfv--~----~~~~ 69 (610)
T PRK13803 12 DSALISKAVDMLPDFIGFIFYEKSP----------------RFVGNKFLAPNLEKAIRKAGGRPVGVFV--N----ESAK 69 (610)
T ss_pred cHHHHHHHHHcCCCEEEEEecCCCC----------------CCCCHHHHHHHHHHhCCCCCCCEEEEEe--C----CCHH
Confidence 3678888899999998775322222 1133333 33455555432112566654 3 2345
Q ss_pred HHHHHHHHcCCcEEEecC-CChhhHHHHHHHHHHcCCCeEEEeCCCCh--HHHHHHHHHhCCceEEEEec---CCccCCC
Q 021527 158 NFMSTVRDIGIRGLVVPD-VPLEETESLQKEAMKNKIELVLFTTPTTP--TDRMKAIVEASEGFVYLVSS---IGVTGAR 231 (311)
Q Consensus 158 ~fi~~~~~aGadGviipD-lp~ee~~~~~~~~~~~gi~~I~lisp~t~--~eri~~i~~~a~gfiY~vs~---~G~TG~~ 231 (311)
+..+.+.+.+.|.+=++. .+.+ ..++.+.+++.+++.+..+..... .+.+.++...++ ++.+-+. .|.||.
T Consensus 70 ~i~~~~~~~~ld~vQLHG~e~~~-~~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~~~~d-~~LlDs~~~~~GGtG~- 146 (610)
T PRK13803 70 AMLKFSKKNGIDFVQLHGAESKA-EPAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVK-YFLFDNKTKIYGGSGK- 146 (610)
T ss_pred HHHHHHHhcCCCEEEECCCCCcc-cHHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhhccCC-EEEEcCCCCCCCCCCC-
Confidence 566667889999988874 2211 133445555556666654433221 122333322122 2223232 344543
Q ss_pred CCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHc-CCc--EEEEhhHhhchhhhcCCchhHHHHHHHHHHHHHh
Q 021527 232 ASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW-GAD--GVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 308 (311)
Q Consensus 232 ~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~-GAD--GvIVGSaiv~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (311)
.++.+ .++.+ ....|+++.+||+ |||+.++++. ..+ ||=|=|.+...- .....+++++|++.+|.
T Consensus 147 -~fdw~---~~~~~--~~~~p~iLAGGL~-peNV~~ai~~~~p~~~gVDvsSGvE~~p-----G~KD~~ki~~fi~~~k~ 214 (610)
T PRK13803 147 -SFDWE---KFYNY--NFKFPFFLSGGLS-PTNFDRIINLTHPQILGIDVSSGFEDSP-----GNKKLTLLKSFITNVKK 214 (610)
T ss_pred -ccChH---Hhhhc--ccCCcEEEEeCCC-HHHHHHHHhhhCCCceEEEccCcccCCC-----CCcCHHHHHHHHHHHHH
Confidence 34432 23332 1256999999996 8999998863 345 887767665321 12346888999998876
No 438
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.18 E-value=0.54 Score=48.00 Aligned_cols=41 Identities=17% Similarity=0.437 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 238 VQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 238 ~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
..+.++++|+.. ++||++| +|.|+++++.+.++|||++.||
T Consensus 269 ~~~~i~~ik~~~~~~~v~aG-~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 269 QIDMIKKLKSNYPHVDIIAG-NVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHHHHhhCCCceEEEC-CcCCHHHHHHHHHcCCCEEEEC
Confidence 457899999875 7898776 6778999999999999999986
No 439
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.17 E-value=0.045 Score=50.80 Aligned_cols=70 Identities=16% Similarity=0.311 Sum_probs=49.6
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHH
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFM 160 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi 160 (311)
..++.|.+.|+|.+ .|.-.|.-.| .|..- .+.++.++++.++||++-+- .+..+.+
T Consensus 135 ~~ar~l~~~G~~~v---mPlg~pIGsg------------~Gi~~---~~~I~~I~e~~~vpVI~egG------I~tpeda 190 (248)
T cd04728 135 VLAKRLEDAGCAAV---MPLGSPIGSG------------QGLLN---PYNLRIIIERADVPVIVDAG------IGTPSDA 190 (248)
T ss_pred HHHHHHHHcCCCEe---CCCCcCCCCC------------CCCCC---HHHHHHHHHhCCCcEEEeCC------CCCHHHH
Confidence 56667777778877 6666666655 24422 35667777778899998753 2345678
Q ss_pred HHHHHcCCcEEEec
Q 021527 161 STVRDIGIRGLVVP 174 (311)
Q Consensus 161 ~~~~~aGadGviip 174 (311)
..+.+.|+||+++.
T Consensus 191 ~~AmelGAdgVlV~ 204 (248)
T cd04728 191 AQAMELGADAVLLN 204 (248)
T ss_pred HHHHHcCCCEEEEC
Confidence 88999999999985
No 440
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.16 E-value=0.12 Score=49.73 Aligned_cols=113 Identities=13% Similarity=0.065 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCH----
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNF---- 124 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~---- 124 (311)
.+.+.++++++.-+..++..+.++ .+...+.++.|+++|+|.|.+-.-+..+..|- .. ....+..|.+.
T Consensus 152 ~~~eil~~v~~~~~iPV~vKl~p~---~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~---~~-~~~~~~~glsg~~~~ 224 (334)
T PRK07565 152 RYLDILRAVKSAVSIPVAVKLSPY---FSNLANMAKRLDAAGADGLVLFNRFYQPDIDL---ET-LEVVPGLVLSTPAEL 224 (334)
T ss_pred HHHHHHHHHHhccCCcEEEEeCCC---chhHHHHHHHHHHcCCCeEEEECCcCCCCcCh---hh-cccccCCCCCCchhh
Confidence 356667777766567788888654 44577889999999999998854442222220 00 00001112211
Q ss_pred HHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 125 NAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 125 ~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
...++++.++++.+++||+..|=.. . .+.+.++..+|||+|-+.
T Consensus 225 ~~al~~v~~~~~~~~ipIig~GGI~-----s-~~Da~e~l~aGA~~V~v~ 268 (334)
T PRK07565 225 RLPLRWIAILSGRVGADLAATTGVH-----D-AEDVIKMLLAGADVVMIA 268 (334)
T ss_pred hHHHHHHHHHHhhcCCCEEEECCCC-----C-HHHHHHHHHcCCCceeee
Confidence 2335678888888899998865211 1 234444556999998885
No 441
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.15 E-value=0.085 Score=48.64 Aligned_cols=98 Identities=19% Similarity=0.119 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCCh-HHHHHHHHHHHHcCCCHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADG-PVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDG-p~Iq~a~~~Al~~G~~~~~ 126 (311)
..+.+..+.+++. .+.+..=+-+|+++ ..+.+.++.++++|+|+|.+.--+ -| |. +
T Consensus 121 ~~l~~iv~av~~~-~~PVsvKiR~~~~~-~~~~~~a~~l~~aGad~i~Vd~~~-----~g~~~---a------------- 177 (231)
T TIGR00736 121 ELLKEFLTKMKEL-NKPIFVKIRGNCIP-LDELIDALNLVDDGFDGIHVDAMY-----PGKPY---A------------- 177 (231)
T ss_pred HHHHHHHHHHHcC-CCcEEEEeCCCCCc-chHHHHHHHHHHcCCCEEEEeeCC-----CCCch---h-------------
Confidence 4577777777744 45677777888764 467899999999999999994222 12 11 1
Q ss_pred HHHHHHHhhccCC-CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 127 ILSMLKEVVPQMS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 127 ~~~~i~~ir~~~~-iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
-++.|+++++.++ +||+..+- +. ..++..+.+ ++|+|||.+.
T Consensus 178 ~~~~I~~i~~~~~~ipIIgNGg---I~--s~eda~e~l-~~GAd~Vmvg 220 (231)
T TIGR00736 178 DMDLLKILSEEFNDKIIIGNNS---ID--DIESAKEML-KAGADFVSVA 220 (231)
T ss_pred hHHHHHHHHHhcCCCcEEEECC---cC--CHHHHHHHH-HhCCCeEEEc
Confidence 1468899998874 99998752 32 234444444 5899999886
No 442
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=96.14 E-value=0.14 Score=49.59 Aligned_cols=97 Identities=12% Similarity=0.278 Sum_probs=74.1
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchh
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPIL 152 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~ 152 (311)
.-|.+.+++.++.|+++|+|++=+-+|-.+ + -+.+++|++..++|++....||
T Consensus 30 T~Dv~atv~QI~~L~~aGceiVRvavp~~~---------~---------------A~al~~I~~~~~iPlVADIHFd--- 82 (346)
T TIGR00612 30 TIDIDSTVAQIRALEEAGCDIVRVTVPDRE---------S---------------AAAFEAIKEGTNVPLVADIHFD--- 82 (346)
T ss_pred chhHHHHHHHHHHHHHcCCCEEEEcCCCHH---------H---------------HHhHHHHHhCCCCCEEEeeCCC---
Confidence 456788999999999999999999866511 1 2467788889999999988877
Q ss_pred ccCHHHHHHHHHHcCCcEEEec--CCCh-hhHHHHHHHHHHcCCCeEEEeC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVP--DVPL-EETESLQKEAMKNKIELVLFTT 200 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviip--Dlp~-ee~~~~~~~~~~~gi~~I~lis 200 (311)
.+..-.+.+.|+|.+=+. .+.. |...++.+.|+++|+..=.-++
T Consensus 83 ----~~lAl~a~~~g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN 129 (346)
T TIGR00612 83 ----YRLAALAMAKGVAKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVN 129 (346)
T ss_pred ----cHHHHHHHHhccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecC
Confidence 234456788899998773 3433 3477899999999997666554
No 443
>PRK00208 thiG thiazole synthase; Reviewed
Probab=96.14 E-value=0.087 Score=48.96 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=50.4
Q ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCHHHHH
Q 021527 81 EALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFM 160 (311)
Q Consensus 81 e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi 160 (311)
..+++|.+.|+|.| .|.-.|.-.| .|..- .+.++.+++..++||++.+- .+..+.+
T Consensus 135 ~~ak~l~~~G~~~v---mPlg~pIGsg------------~gi~~---~~~i~~i~e~~~vpVIveaG------I~tpeda 190 (250)
T PRK00208 135 VLAKRLEEAGCAAV---MPLGAPIGSG------------LGLLN---PYNLRIIIEQADVPVIVDAG------IGTPSDA 190 (250)
T ss_pred HHHHHHHHcCCCEe---CCCCcCCCCC------------CCCCC---HHHHHHHHHhcCCeEEEeCC------CCCHHHH
Confidence 66777777888888 6766676655 24322 34577777777899999752 2345678
Q ss_pred HHHHHcCCcEEEec
Q 021527 161 STVRDIGIRGLVVP 174 (311)
Q Consensus 161 ~~~~~aGadGviip 174 (311)
..+.+.|+||+++.
T Consensus 191 ~~AmelGAdgVlV~ 204 (250)
T PRK00208 191 AQAMELGADAVLLN 204 (250)
T ss_pred HHHHHcCCCEEEEC
Confidence 88999999999995
No 444
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=96.13 E-value=0.075 Score=49.33 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=74.3
Q ss_pred HHHHHHHHcCCcEEEecCC--------ChhhHHHHHHHHHHcCCCeEEEeCCCChHHH--------HHHHHH----h---
Q 021527 158 NFMSTVRDIGIRGLVVPDV--------PLEETESLQKEAMKNKIELVLFTTPTTPTDR--------MKAIVE----A--- 214 (311)
Q Consensus 158 ~fi~~~~~aGadGviipDl--------p~ee~~~~~~~~~~~gi~~I~lisp~t~~er--------i~~i~~----~--- 214 (311)
--...+++.|++.+++..- ..+....-...+.++|+.+|+-+.-+ .++| +....+ .
T Consensus 75 vS~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCvGE~-~~~~~~~~~~~~l~~Ql~~~l~~i~~ 153 (244)
T PF00121_consen 75 VSAEMLKDLGCKYVIIGHSERRQYFGETDEIINKKVKAALENGLTPIVCVGET-LEERESGKTKEVLKRQLKSILKGIDK 153 (244)
T ss_dssp HBHHHHHHTTESEEEESCHHHHHHST-BHHHHHHHHHHHHHTT-EEEEEESSB-HHHHHTTCHHHHHHHHHHHHHTTSSG
T ss_pred hHHHHHHHhhCCEEEeccccccCccccccHHHHHHHHHHHHCCCEEEEEeccc-hhhhhcCcHHHHHHHHHHHHHhcccc
Confidence 3456788999999999742 12233444566788999988877653 2222 211111 1
Q ss_pred ---CCceEEEEecCC-ccCCCCCCCchHHHHHHHHhhc----------CCCcEEEeeCCCCHHHHHHHH-HcCCcEEEEh
Q 021527 215 ---SEGFVYLVSSIG-VTGARASISGHVQTLLREIKES----------STKPVAVGFGISKPEHVQQVA-GWGADGVIVG 279 (311)
Q Consensus 215 ---a~gfiY~vs~~G-~TG~~~~~~~~~~~~l~~vk~~----------~~~Pv~vGfGIst~e~v~~v~-~~GADGvIVG 279 (311)
..-.|-|.+.-- .||.. ..+....+..+.+|+. .+++|+.|++|+ ++++.+++ ..+.||+-||
T Consensus 154 ~~~~~~iIAYEPvWAIGtG~~-as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGGSV~-~~N~~~l~~~~~iDG~LVG 231 (244)
T PF00121_consen 154 EELKNIIIAYEPVWAIGTGKT-ASPEQIQEVHAFIREILAELYGEEVANNIRILYGGSVN-PENAAELLSQPDIDGVLVG 231 (244)
T ss_dssp GGGTCEEEEEEEGGGTSSSS--CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEESSES-TTTHHHHHTSTT-SEEEES
T ss_pred ccccceEEEEcccccccCCCC-CCHHHHHHHHHHHHHHHHHhccccccCceeEEECCcCC-cccHHHHhcCCCCCEEEEc
Confidence 123344433221 34543 2344566666666664 168999999998 58888775 5568999999
Q ss_pred hHhhc
Q 021527 280 SAMVK 284 (311)
Q Consensus 280 Saiv~ 284 (311)
++-.+
T Consensus 232 ~asl~ 236 (244)
T PF00121_consen 232 GASLK 236 (244)
T ss_dssp GGGGS
T ss_pred hhhhc
Confidence 99876
No 445
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.12 E-value=0.047 Score=53.00 Aligned_cols=105 Identities=13% Similarity=0.047 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcC-----CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCC-------------CChHHH
Q 021527 49 GLAETFTRLKKQG-----KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPL-------------ADGPVI 110 (311)
Q Consensus 49 ~i~~~f~~~~~~~-----~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~-------------aDGp~I 110 (311)
.+.+.++++++.- +..++.=+.++. +.+...++++.++++|+|.|.+-.-+.++. ..|+.+
T Consensus 193 ~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~-~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~ 271 (344)
T PRK05286 193 ALDELLAALKEAQAELHGYVPLLVKIAPDL-SDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPL 271 (344)
T ss_pred HHHHHHHHHHHHHhccccCCceEEEeCCCC-CHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHH
Confidence 4556666666532 256666666543 335789999999999999999977664432 122322
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhccC--CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe
Q 021527 111 QAAATRSLARGTNFNAILSMLKEVVPQM--SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV 173 (311)
Q Consensus 111 q~a~~~Al~~G~~~~~~~~~i~~ir~~~--~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii 173 (311)
... .+++++++++++ ++||+..|=.. . .+.+.++..+|||.|-+
T Consensus 272 ~~~-------------~l~~v~~l~~~~~~~ipIig~GGI~-----s-~eda~e~l~aGAd~V~v 317 (344)
T PRK05286 272 FER-------------STEVIRRLYKELGGRLPIIGVGGID-----S-AEDAYEKIRAGASLVQI 317 (344)
T ss_pred HHH-------------HHHHHHHHHHHhCCCCCEEEECCCC-----C-HHHHHHHHHcCCCHHHH
Confidence 221 356888888877 79998875221 1 23444455589997755
No 446
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=96.10 E-value=0.15 Score=49.73 Aligned_cols=42 Identities=33% Similarity=0.448 Sum_probs=36.2
Q ss_pred HHHHHHHHhhcCCCcEEE---eeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 238 VQTLLREIKESSTKPVAV---GFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 238 ~~~~l~~vk~~~~~Pv~v---GfGIst~e~v~~v~~~GADGvIVGS 280 (311)
+.+.++.+++.+++||++ |+|.+ .+.++.+.+.|+|+++|+.
T Consensus 174 ~le~i~~i~~~~~vPVivK~~g~g~s-~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 174 WLDNIAEIVSALPVPVIVKEVGFGIS-KETAKRLADAGVKAIDVAG 218 (352)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCc-HHHHHHHHHcCCCEEEECC
Confidence 347788888888999997 88875 8999999999999999954
No 447
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=96.10 E-value=0.6 Score=45.25 Aligned_cols=166 Identities=10% Similarity=0.083 Sum_probs=93.5
Q ss_pred ChhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHH
Q 021527 46 PTVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFN 125 (311)
Q Consensus 46 ~m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~ 125 (311)
++.++.+..+.. ++..+..++.+|.-+ .+.++...++|+|.|-+.+.-++ - +
T Consensus 63 ~~e~i~~~~~~~---~~~~~~~ll~pg~~~----~~dl~~a~~~gvd~iri~~~~~e----~-----------------d 114 (333)
T TIGR03217 63 DLEYIEAAADVV---KRAKVAVLLLPGIGT----VHDLKAAYDAGARTVRVATHCTE----A-----------------D 114 (333)
T ss_pred hHHHHHHHHHhC---CCCEEEEEeccCccC----HHHHHHHHHCCCCEEEEEeccch----H-----------------H
Confidence 355666555543 233456677777654 46688889999999999865443 1 1
Q ss_pred HHHHHHHHhhcc-CCCcEEEE-ecCcchhccCHH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-C--C
Q 021527 126 AILSMLKEVVPQ-MSCPIALF-TYYNPILKRGVD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-K--I 193 (311)
Q Consensus 126 ~~~~~i~~ir~~-~~iPiilm-~Y~n~i~~~g~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-g--i 193 (311)
...+.++.+|+. ..+=+.+| ++ .+..+ +.++.+.+.|++.|.+.| +.+++..++...++++ + +
T Consensus 115 ~~~~~i~~ak~~G~~v~~~l~~s~-----~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i 189 (333)
T TIGR03217 115 VSEQHIGMARELGMDTVGFLMMSH-----MTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPET 189 (333)
T ss_pred HHHHHHHHHHHcCCeEEEEEEccc-----CCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCc
Confidence 223455555543 22222232 32 23334 445567889999999998 5678888888887764 3 3
Q ss_pred CeEEEeCCCChHHHHHHHHHhCCceEEE-EecCCccCCCCCCCchHHHHHHHHh
Q 021527 194 ELVLFTTPTTPTDRMKAIVEASEGFVYL-VSSIGVTGARASISGHVQTLLREIK 246 (311)
Q Consensus 194 ~~I~lisp~t~~eri~~i~~~a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk 246 (311)
.+-+-...+..-.-...++....|..++ .|..| -|.+.+. ..++.++.-++
T Consensus 190 ~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G-~G~~aGN-~~~E~lv~~l~ 241 (333)
T TIGR03217 190 QVGFHAHHNLSLAVANSIAAIEAGATRIDASLRG-LGAGAGN-APLEVFVAVLD 241 (333)
T ss_pred eEEEEeCCCCchHHHHHHHHHHhCCCEEEeeccc-ccccccC-ccHHHHHHHHH
Confidence 3333333333333333444455677677 34444 3444332 33445555443
No 448
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=96.06 E-value=0.054 Score=53.17 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHcC-CCeEEE-eCCCChHHHHHH-HHHhCCceEEEEecCCccCCCC-------CCCchHHHHHHH----
Q 021527 179 EETESLQKEAMKNK-IELVLF-TTPTTPTDRMKA-IVEASEGFVYLVSSIGVTGARA-------SISGHVQTLLRE---- 244 (311)
Q Consensus 179 ee~~~~~~~~~~~g-i~~I~l-isp~t~~eri~~-i~~~a~gfiY~vs~~G~TG~~~-------~~~~~~~~~l~~---- 244 (311)
|+..++.+.+++.+ =.+|.+ +......+.+.. .++....||-+-...|.||+.. ++|. ..-+.+
T Consensus 188 edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~--~~~l~~a~~~ 265 (368)
T PF01645_consen 188 EDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPT--EYALARAHQA 265 (368)
T ss_dssp HHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---H--HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcH--HHHHHHHHHH
Confidence 55666667776665 234432 233344555544 3344456666656777888742 2221 222333
Q ss_pred Hhhc-C--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhchhh
Q 021527 245 IKES-S--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287 (311)
Q Consensus 245 vk~~-~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~~~~ 287 (311)
+++. . .+.+++.+|+.|+.|+.+.+-.|||.|-+|+++.-.++
T Consensus 266 L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlG 311 (368)
T PF01645_consen 266 LVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALIALG 311 (368)
T ss_dssp HHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT
T ss_pred HHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcc
Confidence 3332 1 47899999999999999999999999999999886553
No 449
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=96.05 E-value=0.82 Score=44.39 Aligned_cols=152 Identities=11% Similarity=0.120 Sum_probs=86.7
Q ss_pred ccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCc
Q 021527 63 VALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCP 141 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iP 141 (311)
..+..++.+|.-+ .+.++...++|+|.|-+.+.-++. +...+.++.+|+. ..+-
T Consensus 78 ~~~~~ll~pg~~~----~~dl~~a~~~gvd~iri~~~~~e~---------------------~~~~~~i~~ak~~G~~v~ 132 (337)
T PRK08195 78 AKIAALLLPGIGT----VDDLKMAYDAGVRVVRVATHCTEA---------------------DVSEQHIGLARELGMDTV 132 (337)
T ss_pred CEEEEEeccCccc----HHHHHHHHHcCCCEEEEEEecchH---------------------HHHHHHHHHHHHCCCeEE
Confidence 4466677666554 366788889999999997544431 1223455555543 2322
Q ss_pred EEEE-ecCcchhccCHH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc---CCCeEEEeCCCChHHHHHH
Q 021527 142 IALF-TYYNPILKRGVD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN---KIELVLFTTPTTPTDRMKA 210 (311)
Q Consensus 142 iilm-~Y~n~i~~~g~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~---gi~~I~lisp~t~~eri~~ 210 (311)
+.+| ++. +..+ ++++.+.+.|+|.+.+.| +.+++..++...++++ ++.+-+-...+..-.-...
T Consensus 133 ~~l~~a~~-----~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANs 207 (337)
T PRK08195 133 GFLMMSHM-----APPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANS 207 (337)
T ss_pred EEEEeccC-----CCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHH
Confidence 3333 222 2333 455677889999999998 5578888888887764 3444343444333333334
Q ss_pred HHHhCCceEEEE-ecCCccCCCCCCCchHHHHHHHHh
Q 021527 211 IVEASEGFVYLV-SSIGVTGARASISGHVQTLLREIK 246 (311)
Q Consensus 211 i~~~a~gfiY~v-s~~G~TG~~~~~~~~~~~~l~~vk 246 (311)
++....|..++- |..| -|.+.+. ..++.++.-+.
T Consensus 208 laAi~aGa~~iD~Sl~G-lG~~aGN-~~tE~lv~~L~ 242 (337)
T PRK08195 208 LAAVEAGATRIDGSLAG-LGAGAGN-TPLEVLVAVLD 242 (337)
T ss_pred HHHHHhCCCEEEecChh-hcccccC-ccHHHHHHHHH
Confidence 444556776773 4444 3444443 33445555443
No 450
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.04 E-value=0.1 Score=50.06 Aligned_cols=106 Identities=7% Similarity=0.011 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHcC--CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHH
Q 021527 48 VGLAETFTRLKKQG--KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFN 125 (311)
Q Consensus 48 ~~i~~~f~~~~~~~--~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~ 125 (311)
..+.+.++.+++.- ...+..=+-.|+.+.+.+.++++.++++|+|.|.+--=.....+.||. .+
T Consensus 117 ~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~------------~~-- 182 (312)
T PRK10550 117 ELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEH------------IN-- 182 (312)
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCc------------cc--
Confidence 34666777766542 245666667787666678999999999999999994111111111110 12
Q ss_pred HHHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 126 AILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 126 ~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
.+.++++++.+++||+..|-.+ ..++..+.+.+.|+|||.+.
T Consensus 183 --~~~i~~ik~~~~iPVi~nGdI~-----t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 183 --WQAIGEIRQRLTIPVIANGEIW-----DWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred --HHHHHHHHhhcCCcEEEeCCcC-----CHHHHHHHHhccCCCEEEEc
Confidence 3688899988999999976432 23555555667899999995
No 451
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.02 E-value=0.47 Score=44.21 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=64.7
Q ss_pred EEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE
Q 021527 66 IPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 66 i~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm 145 (311)
-.+.-.|.++.+.+.+.++..++.|+|.+.+--||-.+. +-+++++..++|.+.+++|+++
T Consensus 68 ~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~------------------~~~~~~~~~~~ia~~~~~pi~i- 128 (281)
T cd00408 68 PVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKP------------------SQEGIVAHFKAVADASDLPVIL- 128 (281)
T ss_pred eEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCC------------------CHHHHHHHHHHHHhcCCCCEEE-
Confidence 345666888899999999999999999999998885542 2235567778888778999988
Q ss_pred ecCcchh---ccCHHHHHHHHHH-cCCcEEEecCCChhhHHHHH
Q 021527 146 TYYNPIL---KRGVDNFMSTVRD-IGIRGLVVPDVPLEETESLQ 185 (311)
Q Consensus 146 ~Y~n~i~---~~g~~~fi~~~~~-aGadGviipDlp~ee~~~~~ 185 (311)
|.+|.. .+.. ++++++.+ -.+-|+=......+...+++
T Consensus 129 -Yn~P~~tg~~l~~-~~~~~L~~~~~v~giK~s~~d~~~~~~~~ 170 (281)
T cd00408 129 -YNIPGRTGVDLSP-ETIARLAEHPNIVGIKDSSGDLDRLTRLI 170 (281)
T ss_pred -EECccccCCCCCH-HHHHHHhcCCCEEEEEeCCCCHHHHHHHH
Confidence 555542 3333 35555554 22444444433333333343
No 452
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=96.02 E-value=1 Score=41.71 Aligned_cols=176 Identities=17% Similarity=0.187 Sum_probs=102.1
Q ss_pred eCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCc
Q 021527 70 TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYN 149 (311)
Q Consensus 70 ~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n 149 (311)
-...|+.+...++++.+.+ -++.+=+|.|- ++ ..| .++++++++..+ +|++..-+-
T Consensus 17 aLD~~~~~~~~~~~~~~~~-~~~~~Kvg~~l---~~-------------~~g------~~~~~el~~~~~-~VflDlK~~ 72 (240)
T COG0284 17 ALDVPTEEEALAFVDKLGP-TVDFVKVGKPL---VA-------------FFG------ADILEELKARGK-KVFLDLKLA 72 (240)
T ss_pred EECCCCHHHHHHHHHHhhc-cccEEEEchHH---HH-------------hcc------HHHHHHHHHhCC-ceEEeeecc
Confidence 3355667788899999988 69999998554 11 112 236777776554 888876544
Q ss_pred chhccCHHHHHHHHHHcCCcEEEecCCCh-hhHHHHHHHHHHcCCCeEEEeCCCCh-H--------------HHHHHHHH
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVPDVPL-EETESLQKEAMKNKIELVLFTTPTTP-T--------------DRMKAIVE 213 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviipDlp~-ee~~~~~~~~~~~gi~~I~lisp~t~-~--------------eri~~i~~ 213 (311)
+|-.+ ....++.+.+.|+|.+.++-.+= +-...+.+...++|- .++.++-.|+ . +.+.++++
T Consensus 73 DIpnT-~~~~~~~~~~~g~d~vtvH~~~G~~~~~~~~e~~~~~~~-~vl~vT~lts~~~~~~~~~~~~~~~~~~v~~~a~ 150 (240)
T COG0284 73 DIPNT-VALAAKAAADLGADAVTVHAFGGFDMLRAAKEALEAGGP-FVLAVTSLTSMGELQLAELGINSSLEEQVLRLAK 150 (240)
T ss_pred cchHH-HHHHHHHhhhcCCcEEEEeCcCCHHHHHHHHHHHhhcCc-eEEEEEeCCCchhhhhhhccccchHHHHHHHHHH
Confidence 44322 24566778889999999986653 335557777777763 3433332222 1 22223333
Q ss_pred hCC--ceEEEEecCCccCCCCCCCchHHHHHHHHhhcCC-CcEEEeeCCCC------HHH---HHHHHHcCCcEEEEhhH
Q 021527 214 ASE--GFVYLVSSIGVTGARASISGHVQTLLREIKESST-KPVAVGFGISK------PEH---VQQVAGWGADGVIVGSA 281 (311)
Q Consensus 214 ~a~--gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~-~Pv~vGfGIst------~e~---v~~v~~~GADGvIVGSa 281 (311)
.+. |++-.+ ++ + +.++++|+.++ --.++-=||.- ... -.+....|+|-+|||=.
T Consensus 151 ~~~~~G~dgvv-----~~------~---~e~~~ir~~~g~~~~iltPGIg~~~~~gdQ~~~~t~~~A~~~Gad~ivVGR~ 216 (240)
T COG0284 151 LAGEAGLDGVV-----CS------A---EEVAAIREILGPDFLILTPGIGAGSQGGDQGRVMTPGEAVRAGADYIVVGRP 216 (240)
T ss_pred HhccCCceEEE-----cC------H---HHHHHHHHhcCCCcEEECCCcCcCcCCCCcccccCHHHHHhcCCCEEEEChh
Confidence 332 333222 11 1 34666666653 11335444443 111 23445589999999999
Q ss_pred hhch
Q 021527 282 MVKL 285 (311)
Q Consensus 282 iv~~ 285 (311)
|+..
T Consensus 217 I~~a 220 (240)
T COG0284 217 ITQA 220 (240)
T ss_pred hhcC
Confidence 8874
No 453
>PLN02540 methylenetetrahydrofolate reductase
Probab=96.00 E-value=0.18 Score=52.20 Aligned_cols=187 Identities=16% Similarity=0.205 Sum_probs=113.7
Q ss_pred CccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEE--cCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccC-
Q 021527 62 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQM- 138 (311)
Q Consensus 62 ~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IEl--G~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~- 138 (311)
..--++|+++-+-+.+...+.+..+.+.|+.-|-+ | ||..+|..-+. -+.+++ ...++|+.+|+..
T Consensus 58 Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrG----Dpp~~~d~~~~-----~~g~F~--~A~dLV~~Ir~~~g 126 (565)
T PLN02540 58 CVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRG----DPPHGQDKFVQ-----VEGGFA--CALDLVKHIRSKYG 126 (565)
T ss_pred CCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECC----CCCCCCCCcCC-----CCCCcc--cHHHHHHHHHHhCC
Confidence 34578999999999999999999999999997755 5 33333221000 001222 2456777777653
Q ss_pred -CCcEEEEecCc--chh-cc-------CHH---HHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcC--CCeEEEeC
Q 021527 139 -SCPIALFTYYN--PIL-KR-------GVD---NFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNK--IELVLFTT 200 (311)
Q Consensus 139 -~iPiilm~Y~n--~i~-~~-------g~~---~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~g--i~~I~lis 200 (311)
..-|.+-+|-. +-. .. ..+ +++++=.++|||- ++.-+=+ +...++.+.|++.| +..++-+.
T Consensus 127 d~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF-iITQlfFD~d~f~~f~~~~r~~Gi~vPIipGIm 205 (565)
T PLN02540 127 DYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLAYLKEKVDAGADL-IITQLFYDTDIFLKFVNDCRQIGITCPIVPGIM 205 (565)
T ss_pred CCceEEEeCCCCCCCcccccccccCCCChHHHHHHHHHHHHcCCCE-EeeccccCHHHHHHHHHHHHhcCCCCCEEeeec
Confidence 25577777743 110 01 111 2333335689995 4543333 44678999999998 56777788
Q ss_pred CCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEE
Q 021527 201 PTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 201 p~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGv 276 (311)
|-++...+..+.+. .|. .+|..+.+.++.++..-..-..+|.-+. .|+++++++.|++|+
T Consensus 206 PI~S~k~l~r~~~l-------------~Gi--~IP~~i~~rLe~~kddde~v~~~Gieia-~e~~~~L~~~Gv~Gi 265 (565)
T PLN02540 206 PINNYKGFLRMTGF-------------CKT--KIPAEITAALEPIKDNDEAVKAYGIHLG-TEMCKKILAHGIKGL 265 (565)
T ss_pred ccCCHHHHHHHHhc-------------cCC--cCCHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHcCCCEE
Confidence 88877766655441 222 4676555555444322111122456665 599999999999998
No 454
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=95.97 E-value=0.86 Score=43.32 Aligned_cols=137 Identities=12% Similarity=0.183 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEc---CCCCCCCCChHHHHHHHHHHHHcCCC
Q 021527 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELG---VPYSDPLADGPVIQAAATRSLARGTN 123 (311)
Q Consensus 47 m~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG---~PfsDP~aDGp~Iq~a~~~Al~~G~~ 123 (311)
++.+-+...++.+.-...++.=+-.||-+.....+.++.+.++|+..|.|- .|-.--...|..+ +.
T Consensus 58 ~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~l-----------v~ 126 (285)
T TIGR02317 58 LDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKEL-----------VS 126 (285)
T ss_pred HHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccc-----------cC
Confidence 333333333333333556777788899998899999999999999999993 1110011122111 13
Q ss_pred HHHHHHHHHHhhc-cCCCcEEEEecCcchhccCHHHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeE
Q 021527 124 FNAILSMLKEVVP-QMSCPIALFTYYNPILKRGVDNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 196 (311)
Q Consensus 124 ~~~~~~~i~~ir~-~~~iPiilm~Y~n~i~~~g~~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I 196 (311)
.++..+-|+..++ ..+.+++++.-.+.+...|+++-+++ ..++|||++.++-+. ..+++...+++....++
T Consensus 127 ~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~--~~e~i~~~~~~i~~Pl~ 201 (285)
T TIGR02317 127 REEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEALT--SLEEFRQFAKAVKVPLL 201 (285)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCCC--CHHHHHHHHHhcCCCEE
Confidence 3333333433333 23457888765565566788888775 477999999998644 22233444455455543
No 455
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.97 E-value=0.64 Score=44.40 Aligned_cols=130 Identities=16% Similarity=0.189 Sum_probs=81.0
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc--CCCcEEEEecCc
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ--MSCPIALFTYYN 149 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~--~~iPiilm~Y~n 149 (311)
|.-|.+.+.+.++.+.+.|+|.|-+.--. |.. .-.+.++..++++...+. -++||++-+..+
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~Gst------GE~----------~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~ 87 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTF------GEC----------ATLTWEEKQAFVATVVETVAGRVPVFVGATTL 87 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccc------ccc----------hhCCHHHHHHHHHHHHHHhCCCCCEEEEeccC
Confidence 45667899999999999999999884111 111 114566666777766554 358988876543
Q ss_pred chhccCHHHHHHHHHHcCCcEEEec---CCCh--hhHHH-HHHHHHHc-CCCeEEEeCCC-----ChHHHHHHHHHhCCc
Q 021527 150 PILKRGVDNFMSTVRDIGIRGLVVP---DVPL--EETES-LQKEAMKN-KIELVLFTTPT-----TPTDRMKAIVEASEG 217 (311)
Q Consensus 150 ~i~~~g~~~fi~~~~~aGadGviip---Dlp~--ee~~~-~~~~~~~~-gi~~I~lisp~-----t~~eri~~i~~~a~g 217 (311)
... ..-+.++.+.+.|+|++++. -.++ ++..+ |+..++.. ++.++++=.|. .+.+-++++++ -..
T Consensus 88 ~t~--~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~-~pn 164 (309)
T cd00952 88 NTR--DTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQ-IPQ 164 (309)
T ss_pred CHH--HHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHhc-CCC
Confidence 221 12457778899999999883 1222 45555 45556666 57777663442 24566666653 344
Q ss_pred eEE
Q 021527 218 FVY 220 (311)
Q Consensus 218 fiY 220 (311)
++.
T Consensus 165 ivg 167 (309)
T cd00952 165 VVA 167 (309)
T ss_pred EEE
Confidence 443
No 456
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=95.96 E-value=0.87 Score=42.75 Aligned_cols=209 Identities=21% Similarity=0.346 Sum_probs=108.7
Q ss_pred HHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc----CCCHHHHH
Q 021527 53 TFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAR----GTNFNAIL 128 (311)
Q Consensus 53 ~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~----G~~~~~~~ 128 (311)
.|.+.|++|+| |..+|+=| .-.++.++++|+|+|-+| |.+ |-+ .+.+ .+++++.+
T Consensus 7 ~l~~~k~~g~k--i~~lTaYD------~~~A~~~d~agvD~iLVG----DSl--gmv-------~~G~~sT~~vtld~mi 65 (261)
T PF02548_consen 7 DLRKMKQKGEK--IVMLTAYD------YPSARIADEAGVDIILVG----DSL--GMV-------VLGYDSTLPVTLDEMI 65 (261)
T ss_dssp HHHHHHHHT----EEEEE--S------HHHHHHHHHTT-SEEEE-----TTH--HHH-------TT--SSSTT--HHHHH
T ss_pred HHHHHHhCCCc--EEEEeccc------HHHHHHHHHcCCCEEEeC----CcH--HHh-------eeCCCCCcCcCHHHHH
Confidence 45555666665 44555433 257788899999999998 321 212 2222 25788888
Q ss_pred HHHHHhhccCCCcEEEEecCcchhc--cCHHHHH----HHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEE--eC
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILK--RGVDNFM----STVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF--TT 200 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~--~g~~~fi----~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~l--is 200 (311)
...+.+|+-..-++++--. |+.. .+.++-+ +.++++|+|.|-+=-- .+..+..+.+-+.||.++-- ++
T Consensus 66 ~h~~aV~Rga~~~~vv~Dm--Pf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg--~~~~~~i~~l~~~GIPV~gHiGLt 141 (261)
T PF02548_consen 66 YHTKAVRRGAPNAFVVADM--PFGSYQASPEQAVRNAGRLMKEAGADAVKLEGG--AEIAETIKALVDAGIPVMGHIGLT 141 (261)
T ss_dssp HHHHHHHHH-TSSEEEEE----TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBS--GGGHHHHHHHHHTT--EEEEEES-
T ss_pred HHHHHHHhcCCCceEEecC--CcccccCCHHHHHHHHHHHHHhcCCCEEEeccc--hhHHHHHHHHHHCCCcEEEEecCc
Confidence 8889998766555444310 2222 2444433 4456799999976422 26667888888999987643 34
Q ss_pred CCCh------------HHHHHHHHHh------CCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEEeeCCCCH
Q 021527 201 PTTP------------TDRMKAIVEA------SEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKP 262 (311)
Q Consensus 201 p~t~------------~eri~~i~~~------a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~ 262 (311)
|.+. .+..+++.+. +.-|..+.- .+|. +.-+.+.+.+++|++ |.|=..
T Consensus 142 PQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE---------~vp~---~la~~It~~l~IPtI-GIGaG~- 207 (261)
T PF02548_consen 142 PQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLE---------CVPA---ELAKAITEALSIPTI-GIGAGP- 207 (261)
T ss_dssp GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEE---------SBBH---HHHHHHHHHSSS-EE-EESS-S-
T ss_pred hhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeee---------cCHH---HHHHHHHHhCCCCEE-ecCCCC-
Confidence 4433 1222223222 333433332 1233 456667788899994 777643
Q ss_pred HHHHHHHHcCCcEEEEhhH-hhchhhhc---------CCchhHHHHHHHHHHHHHhh
Q 021527 263 EHVQQVAGWGADGVIVGSA-MVKLLGEA---------QSPEEGLKELEKFAKSLKSA 309 (311)
Q Consensus 263 e~v~~v~~~GADGvIVGSa-iv~~~~~~---------~~~~~~~~~~~~~~~~l~~~ 309 (311)
++||-|.=+. +.-...+. +..+...+.+.+|.++.+..
T Consensus 208 ---------~cDGQvLV~~DlLG~~~~~~pkf~k~y~~~~~~~~~A~~~y~~~V~~g 255 (261)
T PF02548_consen 208 ---------GCDGQVLVSHDLLGLFTDFPPKFVKQYANLGEEIEEAVKAYANEVKSG 255 (261)
T ss_dssp ---------TSSEEEE-HHHHTTSSSSS--TT---SSTTCSSHHHHHHHHHHHHHTT
T ss_pred ---------CCCceEEeHhhhhcccCCCCCCcHHHHhhHHHHHHHHHHHHHHHHhCC
Confidence 4888776432 22221110 11245577889999988764
No 457
>PRK07094 biotin synthase; Provisional
Probab=95.94 E-value=0.83 Score=43.50 Aligned_cols=180 Identities=16% Similarity=0.139 Sum_probs=100.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR 154 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~ 154 (311)
+.+..++.++.+.+.|++.+.+.- -.||..+ .+.+.++++.++++.++++.+-. ..
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~g-G~~~~~~-----------------~~~l~~l~~~i~~~~~l~i~~~~--g~---- 126 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQS-GEDPYYT-----------------DEKIADIIKEIKKELDVAITLSL--GE---- 126 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec-CCCCCCC-----------------HHHHHHHHHHHHccCCceEEEec--CC----
Confidence 456788888888889999998840 0133322 23456677888765555554311 10
Q ss_pred CHHHHHHHHHHcCCcEEEe--------------cCCChhhHHHHHHHHHHcCCCeEE--Ee-CC-CChHHHHH---HHHH
Q 021527 155 GVDNFMSTVRDIGIRGLVV--------------PDVPLEETESLQKEAMKNKIELVL--FT-TP-TTPTDRMK---AIVE 213 (311)
Q Consensus 155 g~~~fi~~~~~aGadGvii--------------pDlp~ee~~~~~~~~~~~gi~~I~--li-sp-~t~~eri~---~i~~ 213 (311)
-.++.++.++++|++.+.+ +....++..+..+.++++|+.... ++ -| .|.+++.. .+.+
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~ 206 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKE 206 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHh
Confidence 1267889999999998876 234446666777888899985332 22 23 34444332 2222
Q ss_pred hCCceEEEEecCCccCCC--CCCC---chHHHHHHHHhhcC---CCcEEEeeCCCCHHHHHHHHHcCCcEEEE
Q 021527 214 ASEGFVYLVSSIGVTGAR--ASIS---GHVQTLLREIKESS---TKPVAVGFGISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 214 ~a~gfiY~vs~~G~TG~~--~~~~---~~~~~~l~~vk~~~---~~Pv~vGfGIst~e~v~~v~~~GADGvIV 278 (311)
.....+.+......-|+. ...+ .+....++..|... ++|...+.+--.++.-...+.+||+++..
T Consensus 207 l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~~~~ 279 (323)
T PRK07094 207 LDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPDGREKGLKAGANVVMP 279 (323)
T ss_pred CCCCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCchhHHHHHHcCCceecC
Confidence 222222222222222221 1111 22344555555543 35655455544466667888999998863
No 458
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=95.93 E-value=1.4 Score=40.72 Aligned_cols=176 Identities=19% Similarity=0.252 Sum_probs=111.7
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
.+||. ++.+...+++|+|.|=+= |--|---||. + .+..+++.++.|+-+-++.+
T Consensus 19 ~~Pdp---v~aA~~a~~aGAdgITvH-----lReDrRHI~d------------~----Dv~~L~~~~~~~lNlE~a~t-- 72 (234)
T cd00003 19 NYPDP---VEAALLAEKAGADGITVH-----LREDRRHIQD------------R----DVRLLRELVRTELNLEMAPT-- 72 (234)
T ss_pred CCCCH---HHHHHHHHHcCCCEEEec-----CCCCcCcCCH------------H----HHHHHHHHcCCCEEeccCCC--
Confidence 36764 667777888999999883 4445444443 2 44455555567777766543
Q ss_pred hccCHHHHHHHHHHcCCcEEE-ecCCCh--------------hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 152 LKRGVDNFMSTVRDIGIRGLV-VPDVPL--------------EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGvi-ipDlp~--------------ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
++|++.+.+.--+-+. +||-+- +....+.+.+++.|+.+.+|+.|+ .+.++...+.
T Consensus 73 -----~em~~ia~~~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd--~~qi~~A~~~-- 143 (234)
T cd00003 73 -----EEMLEIALEVKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPD--PEQIEAAKEV-- 143 (234)
T ss_pred -----HHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHh--
Confidence 7899999998876554 465442 235667888999999999999997 4555544443
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhc------CCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKES------STKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~------~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~ 284 (311)
|..++.-.+|....... .....+.+++++.. .++-|-+|-|.+ .+++..+... +-+-+-||-+|+.
T Consensus 144 GAd~VELhTG~Ya~a~~-~~~~~~el~~i~~aa~~a~~~GL~VnAGHgLn-y~Nv~~i~~ip~i~ElnIGHsiia 216 (234)
T cd00003 144 GADRVELHTGPYANAYD-KAEREAELERIAKAAKLARELGLGVNAGHGLN-YENVKPIAKIPGIAELNIGHAIIS 216 (234)
T ss_pred CcCEEEEechhhhcCCC-chhHHHHHHHHHHHHHHHHHcCCEEecCCCCC-HHHHHHHHhCCCCeEEccCHHHHH
Confidence 33333333343322111 11222335554432 367888999997 7999888643 3577889988775
No 459
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=95.92 E-value=1.9 Score=42.21 Aligned_cols=150 Identities=13% Similarity=0.181 Sum_probs=80.5
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH----HHHHHHhhcc-CCCcEEEEecCcchhcc
Q 021527 80 AEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI----LSMLKEVVPQ-MSCPIALFTYYNPILKR 154 (311)
Q Consensus 80 ~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~----~~~i~~ir~~-~~iPiilm~Y~n~i~~~ 154 (311)
.+.++.+.++|+|.|.+-+|-||. .++ -..|.+.++. .+.++..++. ..+-+.++. ..+.
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~Sd~-----~~~------~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed----a~r~ 138 (363)
T TIGR02090 74 KKDIDKAIDCGVDSIHTFIATSPI-----HLK------YKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAED----ATRT 138 (363)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHH-----HHH------HHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee----cCCC
Confidence 466788889999999998888762 111 1234454444 4455555543 222222221 2222
Q ss_pred CH---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecC
Q 021527 155 GV---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSI 225 (311)
Q Consensus 155 g~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~ 225 (311)
.. .++++.+.+.|+|.+.++| +.+++..++...+++. ++.+-+-...+.--.-...++....|..++- |..
T Consensus 139 ~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~ 218 (363)
T TIGR02090 139 DIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVKLPISVHCHNDFGLATANSIAGVKAGAEQVHVTVN 218 (363)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccCceEEEEecCCCChHHHHHHHHHHCCCCEEEEEee
Confidence 22 3466678889999999998 4467777777777653 3322222333322222233444456777773 444
Q ss_pred CccCCCCCCCchHHHHHHHHh
Q 021527 226 GVTGARASISGHVQTLLREIK 246 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk 246 (311)
| -|.+.+. ..+++++.-++
T Consensus 219 G-lGeraGN-~~lE~vv~~L~ 237 (363)
T TIGR02090 219 G-IGERAGN-AALEEVVMALK 237 (363)
T ss_pred c-ccccccc-ccHHHHHHHHH
Confidence 4 3444432 23444444443
No 460
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=95.90 E-value=0.64 Score=47.26 Aligned_cols=67 Identities=31% Similarity=0.375 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.++++.+.+..-.++ ++... -| -...+.+.++.+|+.. ++||++|.++ |+|++..+.++|||++.||
T Consensus 230 ~e~a~~L~~agvdvi-vvD~a--~g----~~~~vl~~i~~i~~~~p~~~vi~g~v~-t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 230 EERAEALVEAGVDVL-VVDTA--HG----HSEGVLDRVREIKAKYPDVQIIAGNVA-TAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHHHHHHhCCCEE-EEECC--CC----cchhHHHHHHHHHhhCCCCCEEEeccC-CHHHHHHHHHcCCCEEEEC
Confidence 467766666444433 22211 11 1234667899999876 8999887666 5899999999999999986
No 461
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=95.85 E-value=1.4 Score=44.59 Aligned_cols=145 Identities=12% Similarity=0.173 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcE-EEEecCc-chhcc
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPI-ALFTYYN-PILKR 154 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPi-ilm~Y~n-~i~~~ 154 (311)
+...++++...++|+|++.+-.+.+|. .- ++ +.++..++. ..-+ +.++|.. |. +
T Consensus 96 dvv~~~v~~A~~~Gvd~irif~~lnd~----~n--------------~~---~~v~~ak~~-G~~v~~~i~~t~~p~--~ 151 (448)
T PRK12331 96 DVVESFVQKSVENGIDIIRIFDALNDV----RN--------------LE---TAVKATKKA-GGHAQVAISYTTSPV--H 151 (448)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecCcH----HH--------------HH---HHHHHHHHc-CCeEEEEEEeecCCC--C
Confidence 345678888899999999998777763 11 22 234444432 2222 2233432 32 2
Q ss_pred CH---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecC
Q 021527 155 GV---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSI 225 (311)
Q Consensus 155 g~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~ 225 (311)
.. .++++.+.++|+|.+.+.| +.+++..++...+++. ++.+-+-...+.--.-...+++...|..++- |..
T Consensus 152 ~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~ 231 (448)
T PRK12331 152 TIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAIS 231 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeecc
Confidence 22 3456678889999999998 5567788887777653 5433333333333233334444556766663 333
Q ss_pred CccCCCCCCCchHHHHHHHHhh
Q 021527 226 GVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
| -|.+++ ++.+++++.-++.
T Consensus 232 g-lg~gaG-N~~tE~lv~~L~~ 251 (448)
T PRK12331 232 P-FAGGTS-QPATESMVAALQD 251 (448)
T ss_pred c-cCCCcC-CHhHHHHHHHHHh
Confidence 3 333333 3456666666654
No 462
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=95.85 E-value=1.3 Score=44.87 Aligned_cols=144 Identities=15% Similarity=0.236 Sum_probs=81.2
Q ss_pred HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEE-EEecC-cchhccCH
Q 021527 79 TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIA-LFTYY-NPILKRGV 156 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPii-lm~Y~-n~i~~~g~ 156 (311)
...+++...++|+|.+.+-.|.||. + ++-..++..++. ...+. ..+|. .|. +..
T Consensus 97 v~~fv~~A~~~Gvd~irif~~lnd~-------~--------------n~~~~i~~ak~~-G~~v~~~i~~t~~p~--~t~ 152 (467)
T PRK14041 97 VELFVKKVAEYGLDIIRIFDALNDI-------R--------------NLEKSIEVAKKH-GAHVQGAISYTVSPV--HTL 152 (467)
T ss_pred hHHHHHHHHHCCcCEEEEEEeCCHH-------H--------------HHHHHHHHHHHC-CCEEEEEEEeccCCC--CCH
Confidence 4455788889999999998777761 1 112233333332 11121 12232 231 223
Q ss_pred H---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCcc
Q 021527 157 D---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228 (311)
Q Consensus 157 ~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~T 228 (311)
+ ++++.+.++|+|.+.+.| +.+++..++...+++. ++.+-+-...+.--.-...++....|..++-+..+.-
T Consensus 153 e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~ 232 (467)
T PRK14041 153 EYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPF 232 (467)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeecccc
Confidence 3 455677889999999998 5567888887777653 5443333333333233344445556776663333333
Q ss_pred CCCCCCCchHHHHHHHHhh
Q 021527 229 GARASISGHVQTLLREIKE 247 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~ 247 (311)
|.+++ ++.+++++.-++.
T Consensus 233 g~gag-N~atE~lv~~L~~ 250 (467)
T PRK14041 233 SMGTS-QPPFESMYYAFRE 250 (467)
T ss_pred CCCCC-ChhHHHHHHHHHh
Confidence 44444 5667777777754
No 463
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=95.82 E-value=0.11 Score=49.38 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
.+.++++|+.+++||++. ++.++++++++.++|+|+++|..
T Consensus 161 ~~~i~~l~~~~~~pvivK-~v~s~~~a~~a~~~G~d~I~v~~ 201 (299)
T cd02809 161 WDDLAWLRSQWKGPLILK-GILTPEDALRAVDAGADGIVVSN 201 (299)
T ss_pred HHHHHHHHHhcCCCEEEe-ecCCHHHHHHHHHCCCCEEEEcC
Confidence 467999999989999887 57889999999999999999954
No 464
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=95.82 E-value=0.66 Score=52.11 Aligned_cols=179 Identities=18% Similarity=0.208 Sum_probs=105.9
Q ss_pred ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc---CCCcEEEEecCcch
Q 021527 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ---MSCPIALFTYYNPI 151 (311)
Q Consensus 75 ~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~---~~iPiilm~Y~n~i 151 (311)
|.+...+.++.+.+.|||+|-+|.- .|.-|+.. +.-+++..|+.+ .++||-+.++-
T Consensus 366 d~~~a~~~A~~qve~GA~iIDVn~~--~~~vd~~e----------------em~rvv~~i~~~~~~~~vPlsIDS~~--- 424 (1178)
T TIGR02082 366 DYDEALDIAKQQVENGAQILDINVD--YGMLDGVA----------------AMKRFLNLLASEPDISTVPLMLDSSE--- 424 (1178)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCC--CCCCCHHH----------------HHHHHHHHHHhccCCCCCeEEEeCCc---
Confidence 3478889999999999999999963 23233321 112344445433 48999998763
Q ss_pred hccCHHHHHHHHHHc--CCcEEEecCCChh----hHHHHHHHHHHcCCCeEEEeC-----CCChHHHHHHHHH---h--C
Q 021527 152 LKRGVDNFMSTVRDI--GIRGLVVPDVPLE----ETESLQKEAMKNKIELVLFTT-----PTTPTDRMKAIVE---A--S 215 (311)
Q Consensus 152 ~~~g~~~fi~~~~~a--GadGviipDlp~e----e~~~~~~~~~~~gi~~I~lis-----p~t~~eri~~i~~---~--a 215 (311)
-+-++.+.++ |.+ ||.|...+ ...++.+.++++|..+|.+.. |.|.++|++...+ . .
T Consensus 425 -----~~v~eaaLk~~~G~~--IINsIs~~~g~~~~~~~~~l~~~yga~vV~m~~de~G~p~t~e~r~~i~~~~~~~~~~ 497 (1178)
T TIGR02082 425 -----WAVLEAGLKCIQGKC--IVNSISLKDGEERFIETAKLIKEYGAAVVVMAFDEEGQARTADRKIEICKRAYNILTE 497 (1178)
T ss_pred -----HHHHHHHHHhcCCCC--EEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2345555554 765 46666653 244678889999999888763 5555555432111 1 2
Q ss_pred -Cce----EEEEecCCc--cCCCCCCCc---hHHHHHHHHhhcC-CCcEEEe-----eCCCCHHHHHHH---------HH
Q 021527 216 -EGF----VYLVSSIGV--TGARASISG---HVQTLLREIKESS-TKPVAVG-----FGISKPEHVQQV---------AG 270 (311)
Q Consensus 216 -~gf----iY~vs~~G~--TG~~~~~~~---~~~~~l~~vk~~~-~~Pv~vG-----fGIst~e~v~~v---------~~ 270 (311)
.|+ |++-...++ ||.. ..+. ...+.++.+|+.. +.|+.+| ||....+.++++ ..
T Consensus 498 ~~Gi~~edIi~DP~i~~v~~g~~-e~n~~~~~~le~i~~ik~~~pg~~~~~GlSN~SFglp~~~~~R~~ln~~FL~~a~~ 576 (1178)
T TIGR02082 498 KVGFPPEDIIFDPNILTIATGIE-EHRRYAINFIEAIRWIKEELPDAKISGGVSNVSFSFRGNPAAREAMHSVFLYHAIR 576 (1178)
T ss_pred HcCCCHHHEEEeCCccccccCch-HHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCCCCCchHHHHHHHHHHHHHHH
Confidence 344 666555542 3321 1111 2334455666655 7899886 888522223333 57
Q ss_pred cCCcEEEEhhHh
Q 021527 271 WGADGVIVGSAM 282 (311)
Q Consensus 271 ~GADGvIVGSai 282 (311)
+|-|.+||=..=
T Consensus 577 ~Gld~aIvnp~~ 588 (1178)
T TIGR02082 577 AGMDMGIVNAGK 588 (1178)
T ss_pred cCCchhhcChhh
Confidence 788888775443
No 465
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=95.80 E-value=0.47 Score=46.05 Aligned_cols=178 Identities=16% Similarity=0.201 Sum_probs=116.1
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE-ecCcchhccC
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF-TYYNPILKRG 155 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm-~Y~n~i~~~g 155 (311)
++.++.++...+.|+.-..++--..+ +|..++.+.++++.|++++++++.+- |-++
T Consensus 87 eeIle~Ak~ak~~Ga~r~c~~aagr~-----------------~~~~~~~i~~~v~~Vk~~~~le~c~slG~l~------ 143 (335)
T COG0502 87 EEILEAAKKAKAAGATRFCMGAAGRG-----------------PGRDMEEVVEAIKAVKEELGLEVCASLGMLT------ 143 (335)
T ss_pred HHHHHHHHHHHHcCCceEEEEEeccC-----------------CCccHHHHHHHHHHHHHhcCcHHhhccCCCC------
Confidence 46899999999999988888744443 12455667789999998888776552 1111
Q ss_pred HHHHHHHHHHcCCcEEE-------------ecCCChhhHHHHHHHHHHcCCCeE---EEeCCCChHHHHHHHHHhCC---
Q 021527 156 VDNFMSTVRDIGIRGLV-------------VPDVPLEETESLQKEAMKNKIELV---LFTTPTTPTDRMKAIVEASE--- 216 (311)
Q Consensus 156 ~~~fi~~~~~aGadGvi-------------ipDlp~ee~~~~~~~~~~~gi~~I---~lisp~t~~eri~~i~~~a~--- 216 (311)
++-.++++++|+|..- +|.=++|+.....+.+++.|+++- ++--..+.++|+..+...+.
T Consensus 144 -~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~ 222 (335)
T COG0502 144 -EEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT 222 (335)
T ss_pred -HHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCC
Confidence 5567889999999653 355567788888888999999743 22345677888866655432
Q ss_pred -ce--EE-EEecCCccCC-CCCCCchHHHHHHHH---hhcC---CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 217 -GF--VY-LVSSIGVTGA-RASISGHVQTLLREI---KESS---TKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 217 -gf--iY-~vs~~G~TG~-~~~~~~~~~~~l~~v---k~~~---~~Pv~vGfGIst~e~v~~v~~~GADGvIVGS 280 (311)
.- |+ ++...|+-=. .... +..+.++.| |=.. .+++..|-....++.....+.+||+.+.+|-
T Consensus 223 pdsVPIn~l~P~~GTPle~~~~~--~~~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~ 295 (335)
T COG0502 223 PDSVPINFLNPIPGTPLENAKPL--DPFEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGD 295 (335)
T ss_pred CCeeeeeeecCCCCCccccCCCC--CHHHHHHHHHHHHHHCCcceeEccCCcccccHHHHHHHHHhccceeeecc
Confidence 11 22 2444442111 1122 234444443 3332 2455557677788878888889999999998
No 466
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=95.78 E-value=0.076 Score=46.60 Aligned_cols=140 Identities=17% Similarity=0.165 Sum_probs=80.7
Q ss_pred HHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcC-Cc--------EEEecCCCh---hhHHHHHHHHHHcCCCeE
Q 021527 129 SMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIG-IR--------GLVVPDVPL---EETESLQKEAMKNKIELV 196 (311)
Q Consensus 129 ~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aG-ad--------GviipDlp~---ee~~~~~~~~~~~gi~~I 196 (311)
++++.+++. ++.+++-..... |+..+.+.+..+| ++ .++++|--+ ....+..+.++++.-...
T Consensus 7 ~~v~~a~~~---~~~i~~TRKt~P--g~r~l~~~Av~~GGg~~hR~gl~d~ili~~nHi~~~g~i~~av~~~~~~~~~~~ 81 (169)
T PF01729_consen 7 RMVDAAKGT---KIRIADTRKTIP--GLRPLEKYAVLAGGGDNHRLGLSDMILIKDNHIAFFGGIEEAVKAARQAAPEKK 81 (169)
T ss_dssp HHHHHTTTS---SSEEEEGSGS-T--TTHHHHHHHHHHTTSBHHHSSTTSSEEE-HHHHHHHSSHHHHHHHHHHHSTTTS
T ss_pred HHHHHhCCC---CEEEeecCCCCc--ccCHHHHHHHHhcCceeEECCCCCcEEehHHHHHHhCCHHHHHHHHHHhCCCCc
Confidence 356555543 777777665443 5566777665544 33 566654211 113334444444432221
Q ss_pred -EEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCc
Q 021527 197 -LFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGAD 274 (311)
Q Consensus 197 -~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GAD 274 (311)
..+-..+.++ ..+..+..-..|-+-. ..++++.+.++++++.. ++-+.+.+||+ ++++.++.+.|+|
T Consensus 82 ~I~VEv~~~ee-~~ea~~~g~d~I~lD~---------~~~~~~~~~v~~l~~~~~~v~ie~SGGI~-~~ni~~ya~~gvD 150 (169)
T PF01729_consen 82 KIEVEVENLEE-AEEALEAGADIIMLDN---------MSPEDLKEAVEELRELNPRVKIEASGGIT-LENIAEYAKTGVD 150 (169)
T ss_dssp EEEEEESSHHH-HHHHHHTT-SEEEEES----------CHHHHHHHHHHHHHHTTTSEEEEESSSS-TTTHHHHHHTT-S
T ss_pred eEEEEcCCHHH-HHHHHHhCCCEEEecC---------cCHHHHHHHHHHHhhcCCcEEEEEECCCC-HHHHHHHHhcCCC
Confidence 3344445444 4444453333333321 12456777788777653 57799999996 7999999999999
Q ss_pred EEEEhhHhhc
Q 021527 275 GVIVGSAMVK 284 (311)
Q Consensus 275 GvIVGSaiv~ 284 (311)
.+.+||....
T Consensus 151 ~isvg~~~~~ 160 (169)
T PF01729_consen 151 VISVGSLTHS 160 (169)
T ss_dssp EEEECHHHHS
T ss_pred EEEcChhhcC
Confidence 9999998765
No 467
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=95.76 E-value=0.13 Score=43.32 Aligned_cols=95 Identities=20% Similarity=0.234 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-C-CCcEEEeeCCC
Q 021527 183 SLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-S-TKPVAVGFGIS 260 (311)
Q Consensus 183 ~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~-~~Pv~vGfGIs 260 (311)
-....++.+|++++.+-...++++-++...+ ...-++++|..- + ...+.+.+.++.+++. . +++|++|+.+-
T Consensus 21 iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e-~~adii~iSsl~--~---~~~~~~~~~~~~L~~~g~~~i~vivGG~~~ 94 (132)
T TIGR00640 21 VIATAYADLGFDVDVGPLFQTPEEIARQAVE-ADVHVVGVSSLA--G---GHLTLVPALRKELDKLGRPDILVVVGGVIP 94 (132)
T ss_pred HHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-cCCCEEEEcCch--h---hhHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 3455567778877766555555555544433 233334443221 1 1123356677778775 3 57788877775
Q ss_pred CHHHHHHHHHcCCcEEE-EhhHhhc
Q 021527 261 KPEHVQQVAGWGADGVI-VGSAMVK 284 (311)
Q Consensus 261 t~e~v~~v~~~GADGvI-VGSaiv~ 284 (311)
.++..++.++|.|+++ .||.+..
T Consensus 95 -~~~~~~l~~~Gvd~~~~~gt~~~~ 118 (132)
T TIGR00640 95 -PQDFDELKEMGVAEIFGPGTPIPE 118 (132)
T ss_pred -hHhHHHHHHCCCCEEECCCCCHHH
Confidence 5788999999999986 2444433
No 468
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=95.76 E-value=2.1 Score=41.61 Aligned_cols=204 Identities=19% Similarity=0.227 Sum_probs=113.7
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcCCC---CCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchh
Q 021527 76 LSTTAEALKLLDSCGSDIIELGVPY---SDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPIL 152 (311)
Q Consensus 76 ~~~~~e~~~~L~~~GaD~IElG~Pf---sDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~ 152 (311)
.+.+.+.++.+.++|++++-.| .| +.|+. -.|.. ++.++++++.++++++|++--.. +
T Consensus 106 ~e~~~~~A~~lk~~ga~~~r~~-~fKpRTsp~s-------------f~G~g-~~gL~~L~~~~~~~Gl~v~tev~-d--- 166 (335)
T PRK08673 106 EEQILEIARAVKEAGAQILRGG-AFKPRTSPYS-------------FQGLG-EEGLKLLAEAREETGLPIVTEVM-D--- 166 (335)
T ss_pred HHHHHHHHHHHHHhchhhccCc-EecCCCCCcc-------------ccccc-HHHHHHHHHHHHHcCCcEEEeeC-C---
Confidence 3679999999999999965433 33 33321 01222 46678999999999999877432 1
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCC--hHHHH---HHHHHhCC-ceEEEEecCC
Q 021527 153 KRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTT--PTDRM---KAIVEASE-GFVYLVSSIG 226 (311)
Q Consensus 153 ~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t--~~eri---~~i~~~a~-gfiY~vs~~G 226 (311)
.+.++.+.+. +|.+-|+--.... ..+.+++.+.|. +|.+-.... .+|.. +.+.+... ..+.|-. |
T Consensus 167 ----~~~~~~l~~~-vd~lqIgAr~~~N-~~LL~~va~~~k-PViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~er--G 237 (335)
T PRK08673 167 ----PRDVELVAEY-VDILQIGARNMQN-FDLLKEVGKTNK-PVLLKRGMSATIEEWLMAAEYILAEGNPNVILCER--G 237 (335)
T ss_pred ----HHHHHHHHHh-CCeEEECcccccC-HHHHHHHHcCCC-cEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEEC--C
Confidence 2345555566 8888887443333 335666667775 455555433 33332 22222222 2444432 3
Q ss_pred ccCC-CCCCCchHHHHHHHHhhcCCCcEEE----eeCCC--CHHHHHHHHHcCCcEEEEhhHhhc--hhhhcCCchhHHH
Q 021527 227 VTGA-RASISGHVQTLLREIKESSTKPVAV----GFGIS--KPEHVQQVAGWGADGVIVGSAMVK--LLGEAQSPEEGLK 297 (311)
Q Consensus 227 ~TG~-~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIs--t~e~v~~v~~~GADGvIVGSaiv~--~~~~~~~~~~~~~ 297 (311)
++.. ......-....+..+|+.++.||++ +.|.+ -+........+||||++|=..+.- .+.++. ..-..+
T Consensus 238 ~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~-~sl~p~ 316 (335)
T PRK08673 238 IRTFETATRNTLDLSAVPVIKKLTHLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGP-QSLTPE 316 (335)
T ss_pred CCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCCCcch-hcCCHH
Confidence 3111 1111111234577888888999977 33331 124556677899999999765442 221111 011145
Q ss_pred HHHHHHHHHHh
Q 021527 298 ELEKFAKSLKS 308 (311)
Q Consensus 298 ~~~~~~~~l~~ 308 (311)
++++++++++.
T Consensus 317 e~~~lv~~i~~ 327 (335)
T PRK08673 317 EFEELMKKLRA 327 (335)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 469
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=95.75 E-value=0.98 Score=47.19 Aligned_cols=145 Identities=12% Similarity=0.195 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcE-EEEecC-cchhcc
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPI-ALFTYY-NPILKR 154 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPi-ilm~Y~-n~i~~~ 154 (311)
+...++++...++|+|++-+-.+.+|. .-+.. .++..++. ..-+ ..++|. .|. +
T Consensus 96 ~vv~~~v~~A~~~Gvd~irif~~lnd~----~n~~~-----------------~i~~ak~~-G~~v~~~i~~t~~p~--~ 151 (592)
T PRK09282 96 DVVEKFVEKAAENGIDIFRIFDALNDV----RNMEV-----------------AIKAAKKA-GAHVQGTISYTTSPV--H 151 (592)
T ss_pred hhhHHHHHHHHHCCCCEEEEEEecChH----HHHHH-----------------HHHHHHHc-CCEEEEEEEeccCCC--C
Confidence 345667888889999999998776663 22222 23333322 1111 112331 232 2
Q ss_pred CHH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecC
Q 021527 155 GVD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSI 225 (311)
Q Consensus 155 g~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~ 225 (311)
..+ ++++.+.++|+|.+.+.| +.+++..++.+.+++. ++.+-+-...++--.-...++....|..++- +..
T Consensus 152 t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~ 231 (592)
T PRK09282 152 TIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAIS 231 (592)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeecc
Confidence 233 455677889999999988 5567888887777653 5433333333333233344445556766663 333
Q ss_pred CccCCCCCCCchHHHHHHHHhh
Q 021527 226 GVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
| -|.+++ ++.+.+++..++.
T Consensus 232 g-~g~~ag-n~~~e~vv~~L~~ 251 (592)
T PRK09282 232 P-LAFGTS-QPPTESMVAALKG 251 (592)
T ss_pred c-cCCCcC-CHhHHHHHHHHHh
Confidence 3 344444 5556666766654
No 470
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=95.68 E-value=0.14 Score=51.95 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=49.8
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.+|++.+.+..-.++.+-+..| -+..+.++++++|+.. ++||++|++. |.|+++++.++|||++-||
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g-------~~~~~~~~i~~i~~~~~~~~vi~g~~~-t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHG-------HQVKMISAIKAVRALDLGVPIVAGNVV-SAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCC-------CcHHHHHHHHHHHHHCCCCeEEEeccC-CHHHHHHHHHhCCCEEEEC
Confidence 4777777665555554433222 2356778999999865 8999998777 5899999999999999876
No 471
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=95.68 E-value=0.24 Score=47.70 Aligned_cols=41 Identities=29% Similarity=0.484 Sum_probs=35.5
Q ss_pred HHHHHHHhhcCCCcEEE---eeCCCCHHHHHHHHHcCCcEEEEhh
Q 021527 239 QTLLREIKESSTKPVAV---GFGISKPEHVQQVAGWGADGVIVGS 280 (311)
Q Consensus 239 ~~~l~~vk~~~~~Pv~v---GfGIst~e~v~~v~~~GADGvIVGS 280 (311)
.+.|+.+++.+++||++ |+|. +.+.++.+.+.|+|+++|+.
T Consensus 167 ~~~i~~l~~~~~vPVivK~~g~g~-s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 167 LERIEELVKALSVPVIVKEVGFGI-SRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCC-CHHHHHHHHHcCCCEEEECC
Confidence 36788888888999998 9885 58999999999999999965
No 472
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=95.67 E-value=1.2 Score=46.34 Aligned_cols=145 Identities=12% Similarity=0.191 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEE-EecC-cchhcc
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIAL-FTYY-NPILKR 154 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiil-m~Y~-n~i~~~ 154 (311)
+-..++++...++|+|.+-+-.+.+|. .- +...++..++. ..-+.. ++|. +|. +
T Consensus 91 dvv~~~v~~a~~~Gvd~irif~~lnd~----~n-----------------~~~~i~~ak~~-G~~v~~~i~~t~~p~--~ 146 (582)
T TIGR01108 91 DVVERFVKKAVENGMDVFRIFDALNDP----RN-----------------LQAAIQAAKKH-GAHAQGTISYTTSPV--H 146 (582)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecCcH----HH-----------------HHHHHHHHHHc-CCEEEEEEEeccCCC--C
Confidence 345667888889999999998777762 11 12233333432 122221 2332 332 2
Q ss_pred CH---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHhCCceEEEE-ecC
Q 021527 155 GV---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEASEGFVYLV-SSI 225 (311)
Q Consensus 155 g~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~a~gfiY~v-s~~ 225 (311)
.. .++++.+.++|+|.+.+.| +.+++..++...+++. ++.+-+-...+.--.-...++....|..++- +..
T Consensus 147 ~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~ 226 (582)
T TIGR01108 147 TLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGADGIDTAIS 226 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeccc
Confidence 22 3456677889999999998 5567788877777653 5443333343333333444555556776663 344
Q ss_pred CccCCCCCCCchHHHHHHHHhh
Q 021527 226 GVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 226 G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
| -|.+++ ++.+.+++..++.
T Consensus 227 G-lG~~tG-n~~le~vv~~L~~ 246 (582)
T TIGR01108 227 S-MSGGTS-HPPTETMVAALRG 246 (582)
T ss_pred c-cccccc-ChhHHHHHHHHHh
Confidence 4 333433 3445666666654
No 473
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=95.67 E-value=2.4 Score=41.49 Aligned_cols=210 Identities=10% Similarity=0.103 Sum_probs=130.4
Q ss_pred HHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q 021527 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS 129 (311)
Q Consensus 50 i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~ 129 (311)
+.+.++..++++ -++..|= ..+++.+.-++++.++.+..+|---.|-.-.+. ..+.+..
T Consensus 4 ~k~iL~~A~~~~-yAV~AfN---~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~-----------------g~~~~~~ 62 (347)
T TIGR01521 4 MRQLLDHAAEFG-YGVPAFN---VNNMEQMRAIMEAADKTDSPVILQASRGARSYA-----------------GAPFLRH 62 (347)
T ss_pred HHHHHHHHHHcC-ceEEEEe---eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhC-----------------CHHHHHH
Confidence 355666655543 4555555 457889999999999999998776533322222 2233455
Q ss_pred HHHHhhccCC-CcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cC-------CChhh----HHHHHHHHHHcCCCe
Q 021527 130 MLKEVVPQMS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PD-------VPLEE----TESLQKEAMKNKIEL 195 (311)
Q Consensus 130 ~i~~ir~~~~-iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pD-------lp~ee----~~~~~~~~~~~gi~~ 195 (311)
+++.+.++.+ +||.|-. + +.-..+.+..|.++|.+.|.+ .. +|+|| ..++.+.++.+|+.+
T Consensus 63 ~~~~~ae~~~~VPValHL--D---Hg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsV 137 (347)
T TIGR01521 63 LILAAIEEYPHIPVVMHQ--D---HGNSPATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASV 137 (347)
T ss_pred HHHHHHHhCCCCcEEEEC--C---CCCCHHHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 7777777775 9999853 1 222246888999999999888 23 48887 567888888766531
Q ss_pred E----EE--e--------------------CCCChHHHHHHHHHhCCceEEE-E---ecCCccCCC-CCCCc-hHHHHHH
Q 021527 196 V----LF--T--------------------TPTTPTDRMKAIVEASEGFVYL-V---SSIGVTGAR-ASISG-HVQTLLR 243 (311)
Q Consensus 196 I----~l--i--------------------sp~t~~eri~~i~~~a~gfiY~-v---s~~G~TG~~-~~~~~-~~~~~l~ 243 (311)
= .+ . .--|.++..++..+.. |...+ + +..|..-.. ...++ =-.+.++
T Consensus 138 EaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~T-gvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~ 216 (347)
T TIGR01521 138 EGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKT-KVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIE 216 (347)
T ss_pred EEEeeecccccccccccccCcccccccchhhcCCCHHHHHHHHHHH-CcCEEehhcccccCCcCCCCCCChhhcCHHHHH
Confidence 0 00 0 0023344455555533 44444 2 344432210 01000 1235689
Q ss_pred HHhhcC-CCcEEE--eeCCCC--------------------HHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 244 EIKESS-TKPVAV--GFGISK--------------------PEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 244 ~vk~~~-~~Pv~v--GfGIst--------------------~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
++++.+ ++|++. |.|+.. .|++++..+.|.-=|=|+|.+....
T Consensus 217 eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~ 282 (347)
T TIGR01521 217 EIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLRLAS 282 (347)
T ss_pred HHHccCCCCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHHHHH
Confidence 998888 799866 555531 5899999999999999999886544
No 474
>PRK14566 triosephosphate isomerase; Provisional
Probab=95.67 E-value=0.19 Score=47.11 Aligned_cols=123 Identities=16% Similarity=0.243 Sum_probs=73.4
Q ss_pred HHHHHHHcCCcEEEecC----CChhhHHH----HHHHHHHcCCCeEEEeCCCChHHH------------HHHHHH-h-C-
Q 021527 159 FMSTVRDIGIRGLVVPD----VPLEETES----LQKEAMKNKIELVLFTTPTTPTDR------------MKAIVE-A-S- 215 (311)
Q Consensus 159 fi~~~~~aGadGviipD----lp~ee~~~----~~~~~~~~gi~~I~lisp~t~~er------------i~~i~~-~-a- 215 (311)
-.+.+++.|++++|+.. ..+.|..+ -.+.+.++|+.+|+-+.-+. ++| ++...+ . .
T Consensus 87 S~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGEtl-eere~g~t~~vv~~Ql~~~l~~~~~~ 165 (260)
T PRK14566 87 SGQMLKDAGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESG-PAREARRTFEVIAEELDIVIEKNGTM 165 (260)
T ss_pred CHHHHHHcCCCEEEECcccccCCCCcCHHHHHHHHHHHHHCCCEEEEEcCCcH-HHHhcCCHHHHHHHHHHHHHhccchh
Confidence 45678999999999963 12233333 45567889998887766432 222 111111 0 0
Q ss_pred --Cc-eEEEEecCC-ccCCCCCCCchHHHHHHHHhhc---------CCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhH
Q 021527 216 --EG-FVYLVSSIG-VTGARASISGHVQTLLREIKES---------STKPVAVGFGISKPEHVQQVAGW-GADGVIVGSA 281 (311)
Q Consensus 216 --~g-fiY~vs~~G-~TG~~~~~~~~~~~~l~~vk~~---------~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSa 281 (311)
.. .|-|.++-. .||.. ..+.+..+....+|+. .+++|+.|+.|+ ++++.+++.. ..||+.||.|
T Consensus 166 ~~~~ivIAYEPvWAIGTG~~-At~e~a~~v~~~IR~~l~~~~~~~a~~~rIlYGGSV~-~~N~~~l~~~~dIDG~LVGgA 243 (260)
T PRK14566 166 AFDNAIIAYEPLWAVGTGKS-ATPEQAQEVHAFIRKRLSEVSPFIGENIRILYGGSVT-PSNAADLFAQPDVDGGLIGGA 243 (260)
T ss_pred hcCcEEEEECcHHhcCCCCC-CCHHHHHHHHHHHHHHHHhcCccccccceEEecCCCC-HhHHHHHhcCCCCCeEEechH
Confidence 11 222322111 24433 2345555555556652 258999999997 8999998643 3799999988
Q ss_pred hhc
Q 021527 282 MVK 284 (311)
Q Consensus 282 iv~ 284 (311)
=.+
T Consensus 244 SL~ 246 (260)
T PRK14566 244 SLN 246 (260)
T ss_pred hcC
Confidence 765
No 475
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=95.65 E-value=1.2 Score=38.24 Aligned_cols=173 Identities=16% Similarity=0.217 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
|-+.+.++...+.|+|+||+++=.+ .||..+-. +. =.+++++++.+++ +.++.+-.-.......-.
T Consensus 13 ent~~a~~~a~~~g~~~iE~Dv~~t---kDg~~vv~-Hd-----i~tL~e~l~~~~~-----~~~i~leiK~~~~~~~~~ 78 (189)
T cd08556 13 ENTLAAFRKALEAGADGVELDVQLT---KDGVLVVI-HD-----IPTLEEVLELVKG-----GVGLNIELKEPTRYPGLE 78 (189)
T ss_pred chHHHHHHHHHHcCCCEEEEEeeEc---CCCCEEEE-cC-----CCCHHHHHHhccc-----CcEEEEEECCCCCchhHH
Confidence 7888999999999999999976553 34533211 10 1466666655543 445555432211100112
Q ss_pred HHHHHHHHHcC-CcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCC
Q 021527 157 DNFMSTVRDIG-IRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASIS 235 (311)
Q Consensus 157 ~~fi~~~~~aG-adGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~ 235 (311)
++.++.+.+.| .+-+++--...+....+++... ++...++............. ....+..++.... ....
T Consensus 79 ~~l~~~i~~~~~~~~v~i~s~~~~~l~~~~~~~p--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~------~~~~ 149 (189)
T cd08556 79 AKVAELLREYGLEERVVVSSFDHEALRALKELDP--EVPTGLLVDKPPLDPLLAEL-ARALGADAVNPHY------KLLT 149 (189)
T ss_pred HHHHHHHHHcCCcCCEEEEeCCHHHHHHHHHhCC--CCcEEEEeecCcccchhhhH-HHhcCCeEEccCh------hhCC
Confidence 44556666665 5666665544443443333222 33333333322221221111 1122332221111 0112
Q ss_pred chHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEE
Q 021527 236 GHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 236 ~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvI 277 (311)
.++++.+++. ++++ .-+.++++++.+.+.+.|+||++
T Consensus 150 ---~~~i~~~~~~-g~~v-~~wtvn~~~~~~~~~~~GVdgI~ 186 (189)
T cd08556 150 ---PELVRAAHAA-GLKV-YVWTVNDPEDARRLLALGVDGII 186 (189)
T ss_pred ---HHHHHHHHHc-CCEE-EEEcCCCHHHHHHHHHCCCCEEe
Confidence 3678888774 7888 55899999999999999999996
No 476
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=95.65 E-value=0.082 Score=50.75 Aligned_cols=163 Identities=20% Similarity=0.261 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHCC--CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc----CCCcEEEEecCcc
Q 021527 77 STTAEALKLLDSCG--SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ----MSCPIALFTYYNP 150 (311)
Q Consensus 77 ~~~~e~~~~L~~~G--aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~----~~iPiilm~Y~n~ 150 (311)
+...+.++.....| +|++++.+ |.|---| .|.++....+++.+..+..-+.. .+.|+.+.
T Consensus 193 d~~~dy~~gV~~~g~~adylviNv--SsPNtpG-------lr~lq~k~~L~~ll~~v~~a~~~~~~~~~~pvl~k----- 258 (398)
T KOG1436|consen 193 DAILDYVEGVRVFGPFADYLVINV--SSPNTPG-------LRSLQKKSDLRKLLTKVVQARDKLPLGKKPPVLVK----- 258 (398)
T ss_pred chHHHHHHHhhhcccccceEEEec--cCCCCcc-------hhhhhhHHHHHHHHHHHHHHHhccccCCCCceEEE-----
Confidence 33445555544443 78888874 4455555 44455555566555544443322 33466654
Q ss_pred hhccCHHHHHHHHHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHH--hCCceEEEEecCCcc
Q 021527 151 ILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVE--ASEGFVYLVSSIGVT 228 (311)
Q Consensus 151 i~~~g~~~fi~~~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~--~a~gfiY~vs~~G~T 228 (311)
|-|||--+|..++....++.+++-++. +.+| .+|-+.... ...++ -|.+
T Consensus 259 ---------------------iapDL~~~el~dia~v~kk~~idg~Iv-sntt-Vsrp~~~~~~~~~~et------GGLs 309 (398)
T KOG1436|consen 259 ---------------------IAPDLSEKELKDIALVVKKLNIDGLIV-SNTT-VSRPKASLVNKLKEET------GGLS 309 (398)
T ss_pred ---------------------eccchhHHHHHHHHHHHHHhCccceee-cCce-eecCcccccccccccc------CCCC
Confidence 345555555555555555555543332 2222 233222111 11111 0223
Q ss_pred CCCCCCCchHHHHHHHHhhcC--CCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 229 GARASISGHVQTLLREIKESS--TKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 229 G~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
|. .+.+--.+.++.+.+.+ ++||+--+||+|-+|+-+-+.+||.-|.++|+|+.
T Consensus 310 G~--plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~y 365 (398)
T KOG1436|consen 310 GP--PLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVY 365 (398)
T ss_pred CC--ccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHhh
Confidence 32 23333456778777776 59999999999999999999999999999999987
No 477
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=95.65 E-value=0.15 Score=49.10 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCC-ChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDP-DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNA 126 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P-~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~ 126 (311)
..+.+..+..++.-...+..-+-.|+. +...+.++++.++++|+|.|.+--=..+....|+ .+
T Consensus 119 ~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~-------------a~--- 182 (321)
T PRK10415 119 DLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGE-------------AE--- 182 (321)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCC-------------cC---
Confidence 346666666655433456666777764 4457889999999999999988411111112221 22
Q ss_pred HHHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 127 ILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 127 ~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
++.++++++.+++||+..|-.. ..+++.+.+.+.|+|||.+.
T Consensus 183 -~~~i~~ik~~~~iPVI~nGgI~-----s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 183 -YDSIRAVKQKVSIPVIANGDIT-----DPLKARAVLDYTGADALMIG 224 (321)
T ss_pred -hHHHHHHHHhcCCcEEEeCCCC-----CHHHHHHHHhccCCCEEEEC
Confidence 4688999999999999976322 23444555556899999996
No 478
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.61 E-value=0.14 Score=42.18 Aligned_cols=90 Identities=12% Similarity=0.089 Sum_probs=54.7
Q ss_pred HHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-C-CCcEEEeeCCC
Q 021527 183 SLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-S-TKPVAVGFGIS 260 (311)
Q Consensus 183 ~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~-~~Pv~vGfGIs 260 (311)
.+...++.+|.+.+.+ .+.+|.+.+.+.+.....-+.++|.. .....+.+.++++++++. . ++++++|+...
T Consensus 18 ~~~~~l~~~G~~vi~l-G~~vp~e~~~~~a~~~~~d~V~iS~~-----~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~ 91 (122)
T cd02071 18 VIARALRDAGFEVIYT-GLRQTPEEIVEAAIQEDVDVIGLSSL-----SGGHMTLFPEVIELLRELGAGDILVVGGGIIP 91 (122)
T ss_pred HHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCCCEEEEccc-----chhhHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 3455567888876665 44455555433333333322333321 112234567788888886 4 57788888775
Q ss_pred CHHHHHHHHHcCCcEEEEh
Q 021527 261 KPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 261 t~e~v~~v~~~GADGvIVG 279 (311)
+++..++.++|.|+++=+
T Consensus 92 -~~~~~~~~~~G~d~~~~~ 109 (122)
T cd02071 92 -PEDYELLKEMGVAEIFGP 109 (122)
T ss_pred -HHHHHHHHHCCCCEEECC
Confidence 577899999999999644
No 479
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=95.60 E-value=2 Score=40.23 Aligned_cols=170 Identities=13% Similarity=0.173 Sum_probs=92.8
Q ss_pred ccEEEEEeCCCCChhh-HHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHH----HHHHhhcc
Q 021527 63 VALIPYITAGDPDLST-TAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS----MLKEVVPQ 137 (311)
Q Consensus 63 ~~li~yi~~G~P~~~~-~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~----~i~~ir~~ 137 (311)
..+..+..+..++... -.+.++.+.++|+|.+.+.+|-||. .++. ..|.+.++.++ .++..++.
T Consensus 63 ~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~-----~~~~------~~~~~~~~~~~~~~~~i~~ak~~ 131 (273)
T cd07941 63 AKLAAFGSTRRAGVKAEEDPNLQALLEAGTPVVTIFGKSWDL-----HVTE------ALGTTLEENLAMIRDSVAYLKSH 131 (273)
T ss_pred cEEEEEecccccCCCccchHHHHHHHhCCCCEEEEEEcCCHH-----HHHH------HcCCCHHHHHHHHHHHHHHHHHc
Confidence 3455555443343321 1245677788999999999888772 1222 23444444444 44444443
Q ss_pred CCCcEE--EEecCcchhccCH---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-C-CCeEEEeCCCChHH
Q 021527 138 MSCPIA--LFTYYNPILKRGV---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-K-IELVLFTTPTTPTD 206 (311)
Q Consensus 138 ~~iPii--lm~Y~n~i~~~g~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-g-i~~I~lisp~t~~e 206 (311)
...+. .+.|++. +.... .++++.+.++|++.+.++| +.+++..++.+.+++. + +.+-+-...+.--.
T Consensus 132 -G~~v~~~~~~~~d~-~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla 209 (273)
T cd07941 132 -GREVIFDAEHFFDG-YKANPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLA 209 (273)
T ss_pred -CCeEEEeEEecccc-CCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcH
Confidence 33332 3334321 11122 3455677889999999998 5567777777777663 3 33323333333223
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHh
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIK 246 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk 246 (311)
-...++....|..++-+..+.-|.+.+.. ++++++..++
T Consensus 210 ~An~laA~~aGa~~id~s~~GlGeraGn~-~~e~~~~~L~ 248 (273)
T cd07941 210 VANSLAAVEAGATQVQGTINGYGERCGNA-NLCSIIPNLQ 248 (273)
T ss_pred HHHHHHHHHcCCCEEEEeccccccccccc-cHHHHHHHHH
Confidence 33344455568878754444456666543 4566666664
No 480
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=95.59 E-value=2.3 Score=40.86 Aligned_cols=155 Identities=22% Similarity=0.325 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCCC---CCCC-------CChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEE
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVPY---SDPL-------ADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALF 145 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~Pf---sDP~-------aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm 145 (311)
+...+.++.+.+.|+..+-| |+|- .|+. -||++.+ .++.||+++. -++++
T Consensus 51 d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~------------------air~iK~~~p-dl~vi 111 (320)
T cd04824 51 NRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQ------------------AIKLIREEFP-ELLIA 111 (320)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHH------------------HHHHHHHhCC-CcEEE
Confidence 47899999999999998776 8872 5566 2454433 4445555431 13333
Q ss_pred e------cCc----chhc-cC-H------HHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCC-CeEEEeC---
Q 021527 146 T------YYN----PILK-RG-V------DNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKI-ELVLFTT--- 200 (311)
Q Consensus 146 ~------Y~n----~i~~-~g-~------~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi-~~I~lis--- 200 (311)
+ |.. .+.. .| + +...+. .+++|+|-|--.|+=......+++.+.++|. ..+..++
T Consensus 112 ~Dvclc~YT~hGHcGil~~~g~vdND~Tl~~L~k~Avs~A~AGADiVAPSdMMDGrV~aIR~aLD~~G~~~~v~ImSYsa 191 (320)
T cd04824 112 CDVCLCEYTSHGHCGILYEDGTINNEASVKRLAEVALAYAKAGAHIVAPSDMMDGRVRAIKQALIQAGLGNKVSVMSYSA 191 (320)
T ss_pred EeeeccCCCCCCcceeECCCCcCcCHHHHHHHHHHHHHHHHhCCCEEecccccccHHHHHHHHHHHCCCccCCeeeehHH
Confidence 1 221 1221 12 1 223332 3679999976668766778889999999999 5555432
Q ss_pred -----------------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-
Q 021527 201 -----------------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS- 249 (311)
Q Consensus 201 -----------------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~- 249 (311)
|....|-+++... ..+|...++=.- .+ ...+.|+++|+.+
T Consensus 192 KyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~lMVKP-------al--~YLDIi~~~k~~~~ 262 (320)
T cd04824 192 KFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSEGADMIMVKP-------GT--PYLDIVREAKDKHP 262 (320)
T ss_pred HhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHhCCCEEEEcC-------Cc--hHHHHHHHHHHhcc
Confidence 2222233444322 356766554111 11 2568899999999
Q ss_pred CCcEEEeeCCC
Q 021527 250 TKPVAVGFGIS 260 (311)
Q Consensus 250 ~~Pv~vGfGIs 260 (311)
++|++ ..-||
T Consensus 263 ~~Pva-aYqVS 272 (320)
T cd04824 263 DLPLA-VYHVS 272 (320)
T ss_pred CCCEE-EEEcc
Confidence 99994 45454
No 481
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=95.59 E-value=2.5 Score=41.29 Aligned_cols=211 Identities=12% Similarity=0.102 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 021527 49 GLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128 (311)
Q Consensus 49 ~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~ 128 (311)
.+.+.|+..++.+ -++..|= ..+++...-++++.++.+..+|----|..-.+. ..+.+.
T Consensus 5 ~~k~lL~~A~~~~-yaV~AfN---~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~-----------------g~~~~~ 63 (347)
T PRK13399 5 TLRQLLDHAAENG-YGVPAFN---VNNMEQILAIMEAAEATDSPVILQASRGARKYA-----------------GDAMLR 63 (347)
T ss_pred cHHHHHHHHHHCC-ceEEEEE---eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhC-----------------CHHHHH
Confidence 4567777766554 4555554 347889999999999999998776533322221 123345
Q ss_pred HHHHHhhccC-CCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEe--cCC-------Chhh----HHHHHHHHHHcCCC
Q 021527 129 SMLKEVVPQM-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV--PDV-------PLEE----TESLQKEAMKNKIE 194 (311)
Q Consensus 129 ~~i~~ir~~~-~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGvii--pDl-------p~ee----~~~~~~~~~~~gi~ 194 (311)
.+++...++. ++||.|-. -+....+.+.+|.++|.+.|.+ ..+ |+|| ..++.+.++.+|+.
T Consensus 64 ~~v~~~ae~~~~VPVaLHL-----DHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~Gvs 138 (347)
T PRK13399 64 HMVLAAAEMYPDIPICLHQ-----DHGNSPATCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVS 138 (347)
T ss_pred HHHHHHHHhcCCCcEEEEC-----CCCCCHHHHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCe
Confidence 5777777777 49999853 2222346889999999999888 234 4776 56788888887763
Q ss_pred eE----EEe----------------------CCCChHHHHHHHHHhCCceEEE----EecCCccCC--CCCCCchHHHHH
Q 021527 195 LV----LFT----------------------TPTTPTDRMKAIVEASEGFVYL----VSSIGVTGA--RASISGHVQTLL 242 (311)
Q Consensus 195 ~I----~li----------------------sp~t~~eri~~i~~~a~gfiY~----vs~~G~TG~--~~~~~~~~~~~l 242 (311)
+= .+- +--|.++...+..+. .|...+ .+..|..-. +...+.=-.+.+
T Consensus 139 VEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~-TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl 217 (347)
T PRK13399 139 VEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQR-TGVDALAIAIGTSHGAYKFTRKPDGDILAIDRI 217 (347)
T ss_pred EEEEeeeccCcccccccccCCccccccccccccCCCHHHHHHHHHH-HCcCEEhhhhccccCCcCCCCCCChhhccHHHH
Confidence 21 000 002334444455543 344444 244443321 111000123578
Q ss_pred HHHhhcC-CCcEEE--eeCCC--------------------CHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 243 REIKESS-TKPVAV--GFGIS--------------------KPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 243 ~~vk~~~-~~Pv~v--GfGIs--------------------t~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
+++++.+ ++|++. |.|+. ..|++++..+.|.-=|=|+|.+....
T Consensus 218 ~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~ 284 (347)
T PRK13399 218 EEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAM 284 (347)
T ss_pred HHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHHHHHH
Confidence 8898888 799866 55553 15999999999999999999886544
No 482
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=95.56 E-value=0.36 Score=53.99 Aligned_cols=182 Identities=15% Similarity=0.116 Sum_probs=112.0
Q ss_pred CChhhHHHHHHHHHHC--CCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-CCCcEEEE-----
Q 021527 74 PDLSTTAEALKLLDSC--GSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALF----- 145 (311)
Q Consensus 74 P~~~~~~e~~~~L~~~--GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~-~~iPiilm----- 145 (311)
....+.+.++..+++. |...+|+. |...=..+.|-|.. +=.+-++++|+. .++|+..+
T Consensus 550 ~rt~d~~~ia~~~~~~~~g~~s~E~w---------ggAtfd~~~rfl~E-----dPwerl~~~r~~~pn~~~qml~Rg~n 615 (1143)
T TIGR01235 550 VRTHDLAKIAPTTSHALPNLFSLECW---------GGATFDVAMRFLHE-----DPWERLEDLRKGVPNILFQMLLRGAN 615 (1143)
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEee---------CCccHHHHHHHhcC-----CHHHHHHHHHHhCCCCceeeeecccc
Confidence 3346788999999984 99999995 32333333443321 124456666665 67888766
Q ss_pred --ecCcchhccCHHHHHHHHHHcCCcEEEecCCCh--hhHHHHHHHHHHcCCCeE---EEe----CCCC---hHH----H
Q 021527 146 --TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL--EETESLQKEAMKNKIELV---LFT----TPTT---PTD----R 207 (311)
Q Consensus 146 --~Y~n~i~~~g~~~fi~~~~~aGadGviipDlp~--ee~~~~~~~~~~~gi~~I---~li----sp~t---~~e----r 207 (311)
+|-| .-.-=++.|++.+++.|+|-+-+=|... +......+..++.|...- .+. .|.. +.+ .
T Consensus 616 ~vgy~~-ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ 694 (1143)
T TIGR01235 616 GVGYTN-YPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNL 694 (1143)
T ss_pred ccCccC-CCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHH
Confidence 3443 1001136799999999999999987654 345566777888887432 222 1222 233 2
Q ss_pred HHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCcEEE----eeCCCCHHHHHHHHHcCCcEE
Q 021527 208 MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV----GFGISKPEHVQQVAGWGADGV 276 (311)
Q Consensus 208 i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~Pv~v----GfGIst~e~v~~v~~~GADGv 276 (311)
.+++.+..-.-+++-. +.|. ..|....++++.+|+.+++||-+ .+|... .+.-...++|||.|
T Consensus 695 ak~l~~~Gad~I~ikD---t~Gl--l~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~-an~laA~eaGad~v 761 (1143)
T TIGR01235 695 AVELEKAGAHILGIKD---MAGL--LKPAAAKLLIKALREKTDLPIHFHTHDTSGIAV-ASMLAAVEAGVDVV 761 (1143)
T ss_pred HHHHHHcCCCEEEECC---CcCC--cCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHH-HHHHHHHHhCCCEE
Confidence 3333333333344433 3333 34667889999999988999877 345543 45666778999876
No 483
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=95.55 E-value=1.8 Score=43.68 Aligned_cols=180 Identities=17% Similarity=0.202 Sum_probs=104.1
Q ss_pred cEEEEEeCCCCChhhHHHHHHHH-----HHCC----CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 021527 64 ALIPYITAGDPDLSTTAEALKLL-----DSCG----SDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134 (311)
Q Consensus 64 ~li~yi~~G~P~~~~~~e~~~~L-----~~~G----aD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~i 134 (311)
.-|.+-.+.+.+.+...+-++.+ .+.| +|+|=||.+..|| +.+...++++
T Consensus 92 ~~Ia~eI~D~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp---------------------~~v~~~Vk~V 150 (450)
T PRK04165 92 TGIAVDVSDTMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDP---------------------EKFAKAVKKV 150 (450)
T ss_pred CEEEEEEeCCCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCH---------------------HHHHHHHHHH
Confidence 33444446666667777777777 6677 9999999888765 2334678888
Q ss_pred hccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcE--EEecCCChhhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHH
Q 021527 135 VPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRG--LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIV 212 (311)
Q Consensus 135 r~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadG--viipDlp~ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~ 212 (311)
++.+++|+.+.++ | .+-++.+.++|+|+ +|.. +..+...++.+.++++|..++. .++. .+.++++.
T Consensus 151 ~~~~dvPLSIDT~-d-------pevleaAleagad~~plI~S-at~dN~~~m~~la~~yg~pvVv-~~~d--l~~L~~lv 218 (450)
T PRK04165 151 AETTDLPLILCSE-D-------PAVLKAALEVVADRKPLLYA-ATKENYEEMAELAKEYNCPLVV-KAPN--LEELKELV 218 (450)
T ss_pred HHhcCCCEEEeCC-C-------HHHHHHHHHhcCCCCceEEe-cCcchHHHHHHHHHHcCCcEEE-Echh--HHHHHHHH
Confidence 8778999999884 2 34677788888885 2222 3334456677888999977655 3443 22222322
Q ss_pred Hh--CCce--EEEEecCCccCCCCCCCchHHHHHHHH---hhc--CCCcEEEeeCCCC-----HH--HHHHHHHcCCcEE
Q 021527 213 EA--SEGF--VYLVSSIGVTGARASISGHVQTLLREI---KES--STKPVAVGFGISK-----PE--HVQQVAGWGADGV 276 (311)
Q Consensus 213 ~~--a~gf--iY~vs~~G~TG~~~~~~~~~~~~l~~v---k~~--~~~Pv~vGfGIst-----~e--~v~~v~~~GADGv 276 (311)
+. ..|+ +++-...| |-...+ .....++++ ++. ...|+++|-+=.+ -| .+..+...|||-+
T Consensus 219 ~~~~~~GI~dIILDPg~g--gf~ksl--~~~~~iRr~Al~~~~~~lgyPil~~~s~k~~~~~~~E~~~As~~~~kya~i~ 294 (450)
T PRK04165 219 EKLQAAGIKDLVLDPGTE--NIKETL--DDFVQIRRAAIKKGDRPLGYPIIAFPIEAWMSDPMKEAAIASTLIAKYADIL 294 (450)
T ss_pred HHHHHcCCCcEEECCCCc--hhhhhH--HHHHHHHhhhhhcccccCCCCEEEcchhhcccchHHHHHHHHHHHHhCCcEE
Confidence 22 2343 34433222 111122 122345554 332 3579988665211 11 2233445668888
Q ss_pred EEhh
Q 021527 277 IVGS 280 (311)
Q Consensus 277 IVGS 280 (311)
|+-+
T Consensus 295 Vl~~ 298 (450)
T PRK04165 295 VLHD 298 (450)
T ss_pred EEcC
Confidence 8744
No 484
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=95.54 E-value=0.32 Score=45.73 Aligned_cols=23 Identities=35% Similarity=0.163 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeC
Q 021527 178 LEETESLQKEAMKNKIELVLFTT 200 (311)
Q Consensus 178 ~ee~~~~~~~~~~~gi~~I~lis 200 (311)
.++..++.+.+++.|.+.+.++.
T Consensus 79 ~~~~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 79 TEEAISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcC
Confidence 34444455555555555554443
No 485
>PRK15452 putative protease; Provisional
Probab=95.50 E-value=0.36 Score=48.63 Aligned_cols=125 Identities=14% Similarity=0.107 Sum_probs=75.8
Q ss_pred EEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEec
Q 021527 68 YITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTY 147 (311)
Q Consensus 68 yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y 147 (311)
...+|++ +.+++..++|||.|=+|.+--. .|+-...++.+++-+.++..++ .++.+.+..
T Consensus 7 lapag~~------e~l~aAi~~GADaVY~G~~~~~------------~R~~~~~f~~edl~eav~~ah~-~g~kvyvt~- 66 (443)
T PRK15452 7 LSPAGTL------KNMRYAFAYGADAVYAGQPRYS------------LRVRNNEFNHENLALGINEAHA-LGKKFYVVV- 66 (443)
T ss_pred EEECCCH------HHHHHHHHCCCCEEEECCCccc------------hhhhccCCCHHHHHHHHHHHHH-cCCEEEEEe-
Confidence 3466665 8899999999999999966311 2232345666665556655443 445565532
Q ss_pred Ccchhc----cCHHHHHHHHHHcCCcEEEecCCChhh-H-------------------HHHHHHHHHcCCCeEEEeCCCC
Q 021527 148 YNPILK----RGVDNFMSTVRDIGIRGLVVPDVPLEE-T-------------------ESLQKEAMKNKIELVLFTTPTT 203 (311)
Q Consensus 148 ~n~i~~----~g~~~fi~~~~~aGadGviipDlp~ee-~-------------------~~~~~~~~~~gi~~I~lisp~t 203 (311)
|.+.. ....++++.+.+.|+||||+.|+..=. + ..-.+..++.|++.+.+ ++..
T Consensus 67 -n~i~~e~el~~~~~~l~~l~~~gvDgvIV~d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvL-SrEL 144 (443)
T PRK15452 67 -NIAPHNAKLKTFIRDLEPVIAMKPDALIMSDPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVIL-SREL 144 (443)
T ss_pred -cCcCCHHHHHHHHHHHHHHHhCCCCEEEEcCHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEE-CCcC
Confidence 32221 122456777889999999997743100 0 11123346678776664 5666
Q ss_pred hHHHHHHHHHh
Q 021527 204 PTDRMKAIVEA 214 (311)
Q Consensus 204 ~~eri~~i~~~ 214 (311)
+-+.|+.+.+.
T Consensus 145 sl~EI~~i~~~ 155 (443)
T PRK15452 145 SLEEIEEIRQQ 155 (443)
T ss_pred CHHHHHHHHhh
Confidence 67778888654
No 486
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.48 E-value=0.17 Score=41.00 Aligned_cols=89 Identities=17% Similarity=0.237 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCCeEEEeCCCChHHH-HHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC--CCcEEEeeC
Q 021527 182 ESLQKEAMKNKIELVLFTTPTTPTDR-MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS--TKPVAVGFG 258 (311)
Q Consensus 182 ~~~~~~~~~~gi~~I~lisp~t~~er-i~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~--~~Pv~vGfG 258 (311)
..+...++.+|.+.+.+-. ..+.+. ++.+.+....+ ..+|.. .+.-...+.++++.+|+.. +++|++|+.
T Consensus 17 ~~~~~~l~~~G~~V~~lg~-~~~~~~l~~~~~~~~pdv-V~iS~~-----~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~ 89 (119)
T cd02067 17 NIVARALRDAGFEVIDLGV-DVPPEEIVEAAKEEDADA-IGLSGL-----LTTHMTLMKEVIEELKEAGLDDIPVLVGGA 89 (119)
T ss_pred HHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHHcCCCE-EEEecc-----ccccHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 3455667888988766544 444444 44443333333 333322 1112345678888888874 578889888
Q ss_pred CCCHHHHHHHHHcCCcEEEE
Q 021527 259 ISKPEHVQQVAGWGADGVIV 278 (311)
Q Consensus 259 Ist~e~v~~v~~~GADGvIV 278 (311)
.-+ ++-+.+.+.|+|+++=
T Consensus 90 ~~~-~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 90 IVT-RDFKFLKEIGVDAYFG 108 (119)
T ss_pred CCC-hhHHHHHHcCCeEEEC
Confidence 866 3446788899999864
No 487
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.46 E-value=0.92 Score=42.86 Aligned_cols=132 Identities=13% Similarity=0.088 Sum_probs=70.7
Q ss_pred CcEEEEecCcchhccCHHHHHHHHHHcCCc---------EEEecCCC---hhhHHHHHHHHHHcCC-CeEEEeCCCChHH
Q 021527 140 CPIALFTYYNPILKRGVDNFMSTVRDIGIR---------GLVVPDVP---LEETESLQKEAMKNKI-ELVLFTTPTTPTD 206 (311)
Q Consensus 140 iPiilm~Y~n~i~~~g~~~fi~~~~~aGad---------GviipDlp---~ee~~~~~~~~~~~gi-~~I~lisp~t~~e 206 (311)
.++.+++--.+. -|...|.+.+..+|-- .+++-|=- .+...+..+.+++.-- .....+-..+- +
T Consensus 117 ~~~~i~~TRKt~--Pg~r~~~k~Av~~GGg~~HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tl-e 193 (273)
T PRK05848 117 HKVKLLDTRKTR--PLLRIFEKYSVRNGGASNHRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESL-E 193 (273)
T ss_pred CCeEEEecCCCC--cchhHHHHHHHHhCCCccccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCH-H
Confidence 345565433222 2456677766665522 33332210 1334455555555321 22333444444 4
Q ss_pred HHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-CCCcEEEeeCCCCHHHHHHHHHcCCcEEEEhhHhhc
Q 021527 207 RMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284 (311)
Q Consensus 207 ri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~~~Pv~vGfGIst~e~v~~v~~~GADGvIVGSaiv~ 284 (311)
...+.++ .|+.++.- . +..+..+.+.++.++.. -++.+.+.+|| ++++++++.+.|+|.+++|+.+..
T Consensus 194 ea~~A~~--~GaDiI~L-D------n~~~e~l~~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~s 262 (273)
T PRK05848 194 EAKNAMN--AGADIVMC-D------NMSVEEIKEVVAYRNANYPHVLLEASGNI-TLENINAYAKSGVDAISSGSLIHQ 262 (273)
T ss_pred HHHHHHH--cCCCEEEE-C------CCCHHHHHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcC
Confidence 4444444 34444331 0 01123344445443322 24569999999 799999999999999999998764
No 488
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.44 E-value=2.8 Score=40.80 Aligned_cols=211 Identities=13% Similarity=0.148 Sum_probs=129.9
Q ss_pred HHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCC-CCCC---------CChHHHHHHHHHHHHcC
Q 021527 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPY-SDPL---------ADGPVIQAAATRSLARG 121 (311)
Q Consensus 52 ~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~Pf-sDP~---------aDGp~Iq~a~~~Al~~G 121 (311)
+.|+..+++ +-++..|- -.+++...-++++.++.++++|---.|. ...+ -||..+ .
T Consensus 3 ~ll~~A~~~-~yAV~AfN---~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~---------~- 68 (340)
T cd00453 3 KVFQVAKEN-NFALPAVN---CVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAI---------L- 68 (340)
T ss_pred HHHHHHHHC-CceEEEEE---eCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhh---------h-
Confidence 456655444 45565565 3477888889999999999987664331 0011 111111 0
Q ss_pred CCHHHHHHHHHHhhccCCCcEEEEecCcchhccC--HHHHHHHHHHcC-----------CcEEEe--cCCChhh----HH
Q 021527 122 TNFNAILSMLKEVVPQMSCPIALFTYYNPILKRG--VDNFMSTVRDIG-----------IRGLVV--PDVPLEE----TE 182 (311)
Q Consensus 122 ~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g--~~~fi~~~~~aG-----------adGvii--pDlp~ee----~~ 182 (311)
..+.+..+++...++.++||.|-. + +.. ..++++.|.++| .+.+.+ ..+|+|| ..
T Consensus 69 -~~~~~~~~~~~~A~~~~VPV~lHL--D---H~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~ 142 (340)
T cd00453 69 -GAISGAHHVHQMAEHYGVPVILHT--D---HCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICS 142 (340)
T ss_pred -hHHHHHHHHHHHHHHCCCCEEEEc--C---CCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHH
Confidence 134456678888888899999953 1 222 247899999999 999887 4688876 56
Q ss_pred HHHHHHHHcCCCeEE---Ee---------C------CCChHHHHHHHHHhCC-c--eEEE-E---ecCCccCC-CCCCCc
Q 021527 183 SLQKEAMKNKIELVL---FT---------T------PTTPTDRMKAIVEASE-G--FVYL-V---SSIGVTGA-RASISG 236 (311)
Q Consensus 183 ~~~~~~~~~gi~~I~---li---------s------p~t~~eri~~i~~~a~-g--fiY~-v---s~~G~TG~-~~~~~~ 236 (311)
++.+.++..|+.+=- -+ . --|.++...+..+... . ...+ + +..|++-. ...++
T Consensus 143 ~vve~Ah~~gi~VEaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~- 221 (340)
T cd00453 143 KYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLT- 221 (340)
T ss_pred HHHHHHHHcCCEEEEEEEecCCccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccC-
Confidence 788888888773210 01 0 0223444555554322 2 2223 2 34444321 12233
Q ss_pred hHHHHHHHHhhcC---------CCcEEE--eeCCCCHHHHHHHHHcCCcEEEEhhHhhchh
Q 021527 237 HVQTLLREIKESS---------TKPVAV--GFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286 (311)
Q Consensus 237 ~~~~~l~~vk~~~---------~~Pv~v--GfGIst~e~v~~v~~~GADGvIVGSaiv~~~ 286 (311)
.+.++++++.+ ++|++. |.|+. .|+++++.+.|.-=+=|+|.+....
T Consensus 222 --~~~L~~i~~~~~~~~gl~~~~~pLVlHGgSG~~-~e~~~~ai~~Gi~KiNi~Te~~~A~ 279 (340)
T cd00453 222 --PTILRDSQEYVSKKHNLPHNSLNFVFHGGSGST-AQEIKDSVSYGVVKMNIDTDTQWAT 279 (340)
T ss_pred --HHHHHHHHHHHHhhcccCCCCCceEEeCCCCCC-HHHHHHHHHcCCeEEEcccHHHHHH
Confidence 35677777765 788766 66775 6999999999999999999876544
No 489
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=95.40 E-value=0.35 Score=44.43 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHcCCccEEEEEeCCCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHH
Q 021527 48 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAI 127 (311)
Q Consensus 48 ~~i~~~f~~~~~~~~~~li~yi~~G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~ 127 (311)
.++.+..+.+++. ...+..=+.+|+. +.+.+.++.|+++|+|+|++..-+..+. .+
T Consensus 126 ~~l~eiv~avr~~-~~pVsvKir~g~~--~~~~~la~~l~~aG~d~ihv~~~~~g~~-----------------ad---- 181 (233)
T cd02911 126 ERLSEFIKALKET-GVPVSVKIRAGVD--VDDEELARLIEKAGADIIHVDAMDPGNH-----------------AD---- 181 (233)
T ss_pred HHHHHHHHHHHhc-CCCEEEEEcCCcC--cCHHHHHHHHHHhCCCEEEECcCCCCCC-----------------Cc----
Confidence 3567777777664 4556666677764 6788999999999999999843322111 12
Q ss_pred HHHHHHhhccCCCcEEEEecCcchhccCHHHHHHHHHHcCCcEEEec
Q 021527 128 LSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVP 174 (311)
Q Consensus 128 ~~~i~~ir~~~~iPiilm~Y~n~i~~~g~~~fi~~~~~aGadGviip 174 (311)
++.+++++ .++||+..+-.+ ..+ .+.++.+.|+|+|.+.
T Consensus 182 ~~~I~~i~--~~ipVIgnGgI~-----s~e-da~~~l~~GaD~VmiG 220 (233)
T cd02911 182 LKKIRDIS--TELFIIGNNSVT-----TIE-SAKEMFSYGADMVSVA 220 (233)
T ss_pred HHHHHHhc--CCCEEEEECCcC-----CHH-HHHHHHHcCCCEEEEc
Confidence 24677776 679998865322 123 3444555899999886
No 490
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=95.39 E-value=0.81 Score=41.47 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=89.1
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHH----HHHhhccCCCcEEEEecC
Q 021527 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSM----LKEVVPQMSCPIALFTYY 148 (311)
Q Consensus 73 ~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~----i~~ir~~~~iPiilm~Y~ 148 (311)
.+..+.....++.+.+.|+|.+.+-+|.||. .++ ...+.+.++.++. ++..|+ ....+.+ +..
T Consensus 63 ~~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~-----~~~------~~~~~~~~~~~~~~~~~v~~ak~-~g~~v~~-~~~ 129 (237)
T PF00682_consen 63 RANEEDIERAVEAAKEAGIDIIRIFISVSDL-----HIR------KNLNKSREEALERIEEAVKYAKE-LGYEVAF-GCE 129 (237)
T ss_dssp ESCHHHHHHHHHHHHHTTSSEEEEEEETSHH-----HHH------HHTCSHHHHHHHHHHHHHHHHHH-TTSEEEE-EET
T ss_pred eehHHHHHHHHHhhHhccCCEEEecCcccHH-----HHH------HhhcCCHHHHHHHHHHHHHHHHh-cCCceEe-Ccc
Confidence 4677777777888889999999999888773 221 1234444444444 444443 2333322 221
Q ss_pred cchhccCH---HHHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHcC--CCeEEEeCCCChHHHHHHHHHhCCceE
Q 021527 149 NPILKRGV---DNFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKNK--IELVLFTTPTTPTDRMKAIVEASEGFV 219 (311)
Q Consensus 149 n~i~~~g~---~~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~g--i~~I~lisp~t~~eri~~i~~~a~gfi 219 (311)
+ ...+.. .++++.+.++|+|.+.++| +.+++..++...+++.- +.+-+-...+.--.-...++....|.-
T Consensus 130 ~-~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~ 208 (237)
T PF00682_consen 130 D-ASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGAD 208 (237)
T ss_dssp T-TGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-S
T ss_pred c-cccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCC
Confidence 1 222333 3566778889999999998 55778878777777643 233333343333333444555667887
Q ss_pred EE-EecCCccCCCCCCCchHHHHHHHHh
Q 021527 220 YL-VSSIGVTGARASISGHVQTLLREIK 246 (311)
Q Consensus 220 Y~-vs~~G~TG~~~~~~~~~~~~l~~vk 246 (311)
++ +|..| -|.+.+. .++++++..++
T Consensus 209 ~id~t~~G-lG~~~Gn-~~le~lv~~L~ 234 (237)
T PF00682_consen 209 RIDGTLGG-LGERAGN-APLEELVAALE 234 (237)
T ss_dssp EEEEBGGG-GSSTTSB--BHHHHHHHHH
T ss_pred EEEccCcc-CCCCCCC-ccHHHHHHHHh
Confidence 77 44444 4555443 34556665543
No 491
>PRK12999 pyruvate carboxylase; Reviewed
Probab=95.38 E-value=1.6 Score=48.99 Aligned_cols=147 Identities=15% Similarity=0.202 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecC----cchh-
Q 021527 78 TTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYY----NPIL- 152 (311)
Q Consensus 78 ~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~----n~i~- 152 (311)
...++++...++|+|++.+. |++-|=+-++ ..++.+++.-..--+.++|. ++.-
T Consensus 628 v~~~~i~~a~~~Gid~~rif----d~lnd~~~~~-----------------~~i~~vk~~g~~~~~~i~ytg~~~d~~~~ 686 (1146)
T PRK12999 628 VVRAFVREAAAAGIDVFRIF----DSLNWVENMR-----------------VAIDAVRETGKIAEAAICYTGDILDPARA 686 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEEe----ccCChHHHHH-----------------HHHHHHHHcCCeEEEEEEEEecCCCCCCC
Confidence 34456889999999999996 4544522222 23333443322223455565 2221
Q ss_pred ccCHH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHHHHHHHHhCCceEEE-Ee
Q 021527 153 KRGVD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDRMKAIVEASEGFVYL-VS 223 (311)
Q Consensus 153 ~~g~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~eri~~i~~~a~gfiY~-vs 223 (311)
.+..+ ++++.+.++|+|.+-+.| +.+++..++...+++. ++.+-+-...+.--.-...++....|..++ ++
T Consensus 687 ~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~a 766 (1146)
T PRK12999 687 KYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVA 766 (1146)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhCCCEEEec
Confidence 13333 455678889999999998 5567888888877754 554334444443333344444555677666 34
Q ss_pred cCCccCCCCCCCchHHHHHHHHhh
Q 021527 224 SIGVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 224 ~~G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
..|..| +++ ++.+++++..++.
T Consensus 767 v~glg~-~tg-n~~le~vv~~L~~ 788 (1146)
T PRK12999 767 VASMSG-LTS-QPSLNSIVAALEG 788 (1146)
T ss_pred chhhcC-CcC-CHHHHHHHHHHHh
Confidence 444433 333 3446666666653
No 492
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=95.38 E-value=1.9 Score=45.04 Aligned_cols=160 Identities=15% Similarity=0.218 Sum_probs=91.5
Q ss_pred ccEEEEE----eCCCCCh--hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhc
Q 021527 63 VALIPYI----TAGDPDL--STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP 136 (311)
Q Consensus 63 ~~li~yi----~~G~P~~--~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~ 136 (311)
-.|..++ .+||-.+ +-...+++...++|+|++=+. |++-|-+.+..+ ++.+|+
T Consensus 76 t~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rif----d~lnd~~n~~~~-----------------i~~~k~ 134 (596)
T PRK14042 76 TQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVF----DALNDARNLKVA-----------------IDAIKS 134 (596)
T ss_pred CceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEc----ccCcchHHHHHH-----------------HHHHHH
Confidence 3455556 6777665 346668888899999999996 566665444433 333333
Q ss_pred cCCCcEEEEecC-cchhccCHH---HHHHHHHHcCCcEEEecC----CChhhHHHHHHHHHHc-CCCeEEEeCCCChHHH
Q 021527 137 QMSCPIALFTYY-NPILKRGVD---NFMSTVRDIGIRGLVVPD----VPLEETESLQKEAMKN-KIELVLFTTPTTPTDR 207 (311)
Q Consensus 137 ~~~iPiilm~Y~-n~i~~~g~~---~fi~~~~~aGadGviipD----lp~ee~~~~~~~~~~~-gi~~I~lisp~t~~er 207 (311)
.-..-...++|. +|++ ..+ ++++.+.+.|+|.+.+.| +.+++..++...+++. ++.+-+-...+.--.-
T Consensus 135 ~G~~~~~~i~yt~sp~~--t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~ 212 (596)
T PRK14042 135 HKKHAQGAICYTTSPVH--TLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLAS 212 (596)
T ss_pred cCCEEEEEEEecCCCCC--CHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHH
Confidence 222222333343 4443 334 455667889999999998 5567888888877763 5443333333333233
Q ss_pred HHHHHHhCCceEEE-EecCCccCCCCCCCchHHHHHHHHhh
Q 021527 208 MKAIVEASEGFVYL-VSSIGVTGARASISGHVQTLLREIKE 247 (311)
Q Consensus 208 i~~i~~~a~gfiY~-vs~~G~TG~~~~~~~~~~~~l~~vk~ 247 (311)
...++....|..++ .+..|..| .++ ++.+++++.-++.
T Consensus 213 an~laAieaGad~iD~ai~glGg-~tG-n~~tE~lv~~L~~ 251 (596)
T PRK14042 213 ICHYEAVLAGCNHIDTAISSFSG-GAS-HPPTEALVAALTD 251 (596)
T ss_pred HHHHHHHHhCCCEEEeccccccC-CCC-cHhHHHHHHHHHh
Confidence 33444455666666 33333333 333 3445666666654
No 493
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=95.37 E-value=2.4 Score=39.61 Aligned_cols=186 Identities=12% Similarity=0.093 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhccCH
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGV 156 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~g~ 156 (311)
++.++.++.+.+.|+..+.+..-..+|..+- . .++++.+.++.++.++++.+. . +.+ .
T Consensus 65 eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~-~---------------~~~~~~i~~~~~~~~i~~~~~-~-g~~----~ 122 (296)
T TIGR00433 65 DEVLEEARKAKAAGATRFCLVASGRGPKDRE-F---------------MEYVEAMVQIVEEMGLKTCAT-L-GLL----D 122 (296)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEecCCCChHH-H---------------HHHHHHHHHHHHhCCCeEEec-C-CCC----C
Confidence 4566777777778887765421112221110 0 122333333334455555332 1 111 2
Q ss_pred HHHHHHHHHcCCcEEEec-CC------------ChhhHHHHHHHHHHcCCCeEE--Ee-CCCChHHHHHHH---HHhCCc
Q 021527 157 DNFMSTVRDIGIRGLVVP-DV------------PLEETESLQKEAMKNKIELVL--FT-TPTTPTDRMKAI---VEASEG 217 (311)
Q Consensus 157 ~~fi~~~~~aGadGviip-Dl------------p~ee~~~~~~~~~~~gi~~I~--li-sp~t~~eri~~i---~~~a~g 217 (311)
++.++.++++|++.+.+. |. .+++..+..+.++++|+.... ++ ...+.++..+.+ .+....
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~ 202 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALANLPPE 202 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhCCCC
Confidence 678889999999998662 31 123344556778889997432 11 234444443322 222222
Q ss_pred eEEEEecCCccCCC--CCCCchH---HHHHHHHhhcCC-CcEEEeeCC--CCHHHHHH-HHHcCCcEEEEhhHhhc
Q 021527 218 FVYLVSSIGVTGAR--ASISGHV---QTLLREIKESST-KPVAVGFGI--SKPEHVQQ-VAGWGADGVIVGSAMVK 284 (311)
Q Consensus 218 fiY~vs~~G~TG~~--~~~~~~~---~~~l~~vk~~~~-~Pv~vGfGI--st~e~v~~-v~~~GADGvIVGSaiv~ 284 (311)
.+.+-......|+. ...+++. .+.+...|...+ ..|-++.|= .-.+..++ .+..|||++++|-.+..
T Consensus 203 ~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~~~~~ 278 (296)
T TIGR00433 203 SVPINFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYLTT 278 (296)
T ss_pred EEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEEcCcccC
Confidence 23221111122221 1112233 344555555543 223333332 11233344 68899999999988876
No 494
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.37 E-value=0.21 Score=51.11 Aligned_cols=67 Identities=27% Similarity=0.293 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 205 TDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 205 ~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
.+|.+++.+..-.+|-+-+.. +....+.+.++++|+.. +.+| +.++|.|+|+++.+.++|||+++||
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~-------g~~~~~~~~i~~ik~~~p~~~v-i~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQ-------GDSIYQLEMIKYIKKTYPELDV-IGGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCC-------CCcHHHHHHHHHHHHhCCCCcE-EEecCCCHHHHHHHHHcCcCEEEEC
Confidence 488888877655555443322 22333457899999976 4666 7789999999999999999999997
No 495
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=95.35 E-value=1.1 Score=40.11 Aligned_cols=183 Identities=19% Similarity=0.277 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHH---HHHHHHHHcCCCHHHH-HHHHHHhhccCCCcEEEEecCc-ch
Q 021527 77 STTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQ---AAATRSLARGTNFNAI-LSMLKEVVPQMSCPIALFTYYN-PI 151 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq---~a~~~Al~~G~~~~~~-~~~i~~ir~~~~iPiilm~Y~n-~i 151 (311)
|-|....+...+.|+|+||+++=.+ .||..+- ....|.-.....+.++ ++.+++++-... +.+ ++
T Consensus 13 ENT~~af~~A~~~Gad~vE~DV~~T---~Dg~~vv~HD~~l~r~t~~~~~v~~~t~~el~~l~~~~~-------~~~~~i 82 (220)
T cd08579 13 ENTLEALEAAIKAKPDYVEIDVQET---KDGQFVVMHDANLKRLAGVNKKVWDLTLEELKKLTIGEN-------GHGAKI 82 (220)
T ss_pred ccHHHHHHHHHHcCCCEEEEEeeEc---CCCCEEEEcCCchhhccCCCCChhhCCHHHHhcCcCccC-------CCCCcC
Confidence 7788888888999999999965542 2442220 0000100001112111 233333321110 111 11
Q ss_pred hccCHHHHHHHHHHcCCcEEEecCCC-----hhh-HHHHHHHHHHcCC-CeEEEeCCCChHHHHHHHHHhCCce--EEEE
Q 021527 152 LKRGVDNFMSTVRDIGIRGLVVPDVP-----LEE-TESLQKEAMKNKI-ELVLFTTPTTPTDRMKAIVEASEGF--VYLV 222 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGviipDlp-----~ee-~~~~~~~~~~~gi-~~I~lisp~t~~eri~~i~~~a~gf--iY~v 222 (311)
- -.+++++.+...++ ++.+ |+. .++ ...+.+.++++|+ +.+.+.+.+ .+-++.+.+...++ .|+.
T Consensus 83 p--tL~evl~~~~~~~~-~l~i-EiK~~~~~~~~~~~~v~~~l~~~~~~~~v~v~Sf~--~~~l~~~~~~~p~~~~~~~~ 156 (220)
T cd08579 83 P--SLDEYLALAKGLKQ-KLLI-ELKPHGHDSPDLVEKFVKLYKQNLIENQHQVHSLD--YRVIEKVKKLDPKIKTGYIL 156 (220)
T ss_pred C--CHHHHHHHhhccCC-eEEE-EECCCCCCCHHHHHHHHHHHHHcCCCcCeEEEeCC--HHHHHHHHHHCCCCeEEEEE
Confidence 1 23667776654333 2222 211 112 3456777888887 455555543 34444444444432 2222
Q ss_pred ec-CC-c--cCCC---CCCCchHHHHHHHHhhcCCCcEEEeeCCCCHHHHHHHHHcCCcEEE
Q 021527 223 SS-IG-V--TGAR---ASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVI 277 (311)
Q Consensus 223 s~-~G-~--TG~~---~~~~~~~~~~l~~vk~~~~~Pv~vGfGIst~e~v~~v~~~GADGvI 277 (311)
.. .+ . .+.. -....-..++++++++. +++| .-+.+++++.++.+.++|+||++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~v-~~wtvn~~~~~~~~~~~Gvd~i~ 216 (220)
T cd08579 157 PFNIGNLPKTNVDFYSIEYSTLNKEFIRQAHQN-GKKV-YVWTVNDPDDMQRYLAMGVDGII 216 (220)
T ss_pred ecccCcccccCceEEeeehhhcCHHHHHHHHHC-CCEE-EEEcCCCHHHHHHHHHcCCCEEe
Confidence 11 00 0 0000 00011123667877774 6787 55689999999999999999986
No 496
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=95.35 E-value=2.8 Score=40.32 Aligned_cols=154 Identities=13% Similarity=0.225 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cCC-C--CCCCC------ChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCc-EEEE
Q 021527 77 STTAEALKLLDSCGSDIIEL-GVP-Y--SDPLA------DGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCP-IALF 145 (311)
Q Consensus 77 ~~~~e~~~~L~~~GaD~IEl-G~P-f--sDP~a------DGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iP-iilm 145 (311)
+...+.++.+.+.|+..+-| |++ - .|+.. ||++. +.|+.+|+.+ | ++++
T Consensus 54 d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~v~------------------~air~iK~~~--p~l~vi 113 (320)
T cd04823 54 DELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVC------------------RAIRAIKEAF--PELGII 113 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCChHH------------------HHHHHHHHhC--CCcEEE
Confidence 57899999999999998776 772 1 45543 34432 2455566554 3 3343
Q ss_pred e------cCc----chhccC-H------HHHHHH---HHHcCCcEEEecCCChhhHHHHHHHHHHcCCCeEEEeC-----
Q 021527 146 T------YYN----PILKRG-V------DNFMST---VRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTT----- 200 (311)
Q Consensus 146 ~------Y~n----~i~~~g-~------~~fi~~---~~~aGadGviipDlp~ee~~~~~~~~~~~gi~~I~lis----- 200 (311)
+ |.. .+...| + +...+. .+++|+|-|--.|+=.......++.+.++|+..+..++
T Consensus 114 ~DVclc~YT~hGHcGil~~~~idND~Tl~~L~~~Avs~A~AGADiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKy 193 (320)
T cd04823 114 TDVALDPYTSHGHDGIVRDGGILNDETVEVLCKQALVQAEAGADIVAPSDMMDGRIGAIREALDAEGFTNVSILSYAAKY 193 (320)
T ss_pred EeeeccCCCCCCcceeccCCcCcCHHHHHHHHHHHHHHHHhCCCEEEcccchhhHHHHHHHHHHHCCCCCCceeechHHh
Confidence 2 221 111111 1 222332 36799999766677666777789999999996665433
Q ss_pred ---------------------------CCChHHHHHHHHH-hCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcCCCc
Q 021527 201 ---------------------------PTTPTDRMKAIVE-ASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKP 252 (311)
Q Consensus 201 ---------------------------p~t~~eri~~i~~-~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~~~P 252 (311)
|....+-+++... ..+|...++=.- .+ ...+.|+++|+.+++|
T Consensus 194 aS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di~EGAD~lMVKP-------al--~YLDIi~~~k~~~~lP 264 (320)
T cd04823 194 ASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDIAEGADMVMVKP-------GM--PYLDIIRRVKDEFGVP 264 (320)
T ss_pred hhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcC-------Cc--hHHHHHHHHHHhcCCC
Confidence 2222233333322 256766554111 11 2568899999999999
Q ss_pred EEEeeCCC
Q 021527 253 VAVGFGIS 260 (311)
Q Consensus 253 v~vGfGIs 260 (311)
|+ ..-||
T Consensus 265 va-aYqVS 271 (320)
T cd04823 265 TF-AYQVS 271 (320)
T ss_pred EE-EEEcc
Confidence 94 44443
No 497
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.45 Score=46.47 Aligned_cols=83 Identities=16% Similarity=0.308 Sum_probs=54.4
Q ss_pred HHHHHHHHHHCCCCEEEEcCC-CCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcchhcc---
Q 021527 79 TAEALKLLDSCGSDIIELGVP-YSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKR--- 154 (311)
Q Consensus 79 ~~e~~~~L~~~GaD~IElG~P-fsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i~~~--- 154 (311)
..+.++.+.+.|||.|=+|.+ |. .|.-+.-++.+++-+.++...+. +..+.+-. |.+.+.
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~-------------~R~~a~nfs~~~l~e~i~~ah~~-gkk~~V~~--N~~~~~~~~ 78 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFG-------------LRRRALNFSVEDLAEAVELAHSA-GKKVYVAV--NTLLHNDEL 78 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCcccc-------------cccccccCCHHHHHHHHHHHHHc-CCeEEEEe--ccccccchh
Confidence 358899999999999999966 41 12212346777766666665544 33333322 332221
Q ss_pred -CHHHHHHHHHHcCCcEEEecCCC
Q 021527 155 -GVDNFMSTVRDIGIRGLVVPDVP 177 (311)
Q Consensus 155 -g~~~fi~~~~~aGadGviipDlp 177 (311)
...++++.+.+.|+|+||+.|+.
T Consensus 79 ~~~~~~l~~l~e~GvDaviv~Dpg 102 (347)
T COG0826 79 ETLERYLDRLVELGVDAVIVADPG 102 (347)
T ss_pred hHHHHHHHHHHHcCCCEEEEcCHH
Confidence 23579999999999999998864
No 498
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=95.34 E-value=2.4 Score=39.33 Aligned_cols=175 Identities=17% Similarity=0.242 Sum_probs=109.8
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhhccCCCcEEEEecCcch
Q 021527 72 GDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPI 151 (311)
Q Consensus 72 G~P~~~~~~e~~~~L~~~GaD~IElG~PfsDP~aDGp~Iq~a~~~Al~~G~~~~~~~~~i~~ir~~~~iPiilm~Y~n~i 151 (311)
.+||. ++.+...+++|||.|=+= |--|---||. + .+..+++..+.|+-+-++.+
T Consensus 22 ~~Pd~---v~aA~~a~~aGAdgITvH-----lReDrRHI~d------------~----Dv~~L~~~~~~~lNlE~a~~-- 75 (239)
T PRK05265 22 NYPDP---VRAALIAEQAGADGITVH-----LREDRRHIRD------------R----DVRLLRETLKTELNLEMAAT-- 75 (239)
T ss_pred CCCCH---HHHHHHHHHcCCCEEEec-----CCCCcccCCH------------H----HHHHHHHhcCCCEEeccCCC--
Confidence 45654 667777888999999883 3445434442 3 34445555556777766543
Q ss_pred hccCHHHHHHHHHHcCCcEEE-ecCCCh--------------hhHHHHHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCC
Q 021527 152 LKRGVDNFMSTVRDIGIRGLV-VPDVPL--------------EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE 216 (311)
Q Consensus 152 ~~~g~~~fi~~~~~aGadGvi-ipDlp~--------------ee~~~~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~ 216 (311)
++|++.+.+.-.+-+. +||-+- +....+.+.+++.||.+.+|+.|+ .+.++...+.
T Consensus 76 -----~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP~--~~qi~~A~~~-- 146 (239)
T PRK05265 76 -----EEMLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPD--PEQIEAAAEV-- 146 (239)
T ss_pred -----HHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHh--
Confidence 7899999888776554 465442 235667888999999999999887 4555544343
Q ss_pred ceEEEEecCCccCCCCCCCchHHHHHHHHhhc------CCCcEEEeeCCCCHHHHHHHHHc-CCcEEEEhhHhhc
Q 021527 217 GFVYLVSSIGVTGARASISGHVQTLLREIKES------STKPVAVGFGISKPEHVQQVAGW-GADGVIVGSAMVK 284 (311)
Q Consensus 217 gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~------~~~Pv~vGfGIst~e~v~~v~~~-GADGvIVGSaiv~ 284 (311)
|..++.-.+|...... .....+.+++++.. .++-|-+|-|++ .+|+..+... +-+=+-||-+|+.
T Consensus 147 GAd~VELhTG~yA~a~--~~~~~~el~~~~~aa~~a~~lGL~VnAGHgLn-y~Nv~~i~~ip~i~EvnIGHsiia 218 (239)
T PRK05265 147 GADRIELHTGPYADAK--TEAEAAELERIAKAAKLAASLGLGVNAGHGLN-YHNVKPIAAIPGIEELNIGHAIIA 218 (239)
T ss_pred CcCEEEEechhhhcCC--CcchHHHHHHHHHHHHHHHHcCCEEecCCCCC-HHhHHHHhhCCCCeEEccCHHHHH
Confidence 3333333333322211 11112234554432 367888999997 7999888652 3577889987775
No 499
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.30 E-value=2.8 Score=42.66 Aligned_cols=66 Identities=23% Similarity=0.327 Sum_probs=46.7
Q ss_pred HHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhcC-CCcEEEeeCCCCHHHHHHHHHcCCcEEEEh
Q 021527 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESS-TKPVAVGFGISKPEHVQQVAGWGADGVIVG 279 (311)
Q Consensus 206 eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~~-~~Pv~vGfGIst~e~v~~v~~~GADGvIVG 279 (311)
+++..+.+..-.++-+-+..|. ...+.++++++|+.. +++| +++.|.|.|.++.+.++|||+|-||
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a~~~-------~~~~~~~i~~ik~~~p~~~v-~agnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTAHGH-------QEKMLEALRAVRALDPGVPI-VAGNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred HHHHHHHHhCCCEEEEeccCCc-------cHHHHHHHHHHHHHCCCCeE-EeeccCCHHHHHHHHHcCCCEEEEC
Confidence 4445554444444444332221 345778999999976 6777 7789999999999999999999855
No 500
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=95.27 E-value=0.29 Score=41.07 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=52.6
Q ss_pred HHHHHHHcCCCeEEEeCCCChHHHHHHHHHhCCceEEEEecCCccCCCCCCCchHHHHHHHHhhc-C-CCcEEEeeCCC-
Q 021527 184 LQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKES-S-TKPVAVGFGIS- 260 (311)
Q Consensus 184 ~~~~~~~~gi~~I~lisp~t~~eri~~i~~~a~gfiY~vs~~G~TG~~~~~~~~~~~~l~~vk~~-~-~~Pv~vGfGIs- 260 (311)
+...++.+|++++.+-...++++-++...+....+|-+-+.++.| .+...+.++.+|+. . ++||++|+++.
T Consensus 19 v~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~------~~~~~~~~~~l~~~gl~~v~vivGG~~~i 92 (128)
T cd02072 19 LDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHG------EIDCKGLREKCDEAGLKDILLYVGGNLVV 92 (128)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCC------HHHHHHHHHHHHHCCCCCCeEEEECCCCC
Confidence 445567788887766554555555555444433444333333221 23455677777775 3 78999999963
Q ss_pred CHH----HHHHHHHcCCcEEE
Q 021527 261 KPE----HVQQVAGWGADGVI 277 (311)
Q Consensus 261 t~e----~v~~v~~~GADGvI 277 (311)
.++ +..++.++|.|.+.
T Consensus 93 ~~~d~~~~~~~L~~~Gv~~vf 113 (128)
T cd02072 93 GKQDFEDVEKRFKEMGFDRVF 113 (128)
T ss_pred ChhhhHHHHHHHHHcCCCEEE
Confidence 223 34669999998874
Done!