RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021527
(311 letters)
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid,
diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A
{Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Length = 262
Score = 381 bits (982), Expect = e-135
Identities = 152/264 (57%), Positives = 202/264 (76%), Gaps = 4/264 (1%)
Query: 47 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLAD 106
+ +++T L +GK A IPYITAGDPDL+TTAEAL+LLD CG+D+IELGVP SDP D
Sbjct: 2 SRPVSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYID 61
Query: 107 GPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDI 166
GP+IQA+ R+LA GT +A+L ML+EV P++SCP+ L +YY PI+ R + ++
Sbjct: 62 GPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKM----KEA 117
Query: 167 GIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG 226
G+ GL+VPD+P SL EA N +ELVL TTP P DRMK I +ASEGFVYLVS G
Sbjct: 118 GVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNG 177
Query: 227 VTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 286
VTG RA+++ V++L++E+K+ + KPVAVGFGISKPEHV+Q+A WGADGVI+GSAMV+ L
Sbjct: 178 VTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQL 237
Query: 287 GEAQSPEEGLKELEKFAKSLKSAL 310
GEA SP++GL+ LE++A+ +K+AL
Sbjct: 238 GEAASPKQGLRRLEEYARGMKNAL 261
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase,
tryptophan biosynthesis, pyridoxal phosphate; HET: IPL
PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB:
1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A*
1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A*
1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Length = 268
Score = 378 bits (972), Expect = e-133
Identities = 89/263 (33%), Positives = 139/263 (52%), Gaps = 2/263 (0%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
F +L + + A +P++T GDP + + + + L G+D +ELGVP+SDPLADGP
Sbjct: 4 YENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPT 63
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQMS-CPIALFTYYNPILKRGVDNFMSTVRDIGI 168
IQ A R+ A G ML + + PI L Y N + G+D F + +G+
Sbjct: 64 IQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGV 123
Query: 169 RGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228
++V DVP+EE+ ++ A+++ I + P D ++ + G+ YL+S GVT
Sbjct: 124 DSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVT 183
Query: 229 GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288
GA + + L+ ++KE P GFGIS PE V GA G I GSA+VK++ +
Sbjct: 184 GAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEK 243
Query: 289 -AQSPEEGLKELEKFAKSLKSAL 310
SP++ L EL F ++K+A
Sbjct: 244 NLASPKQMLAELRSFVSAMKAAS 266
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural
genomics, CSG center for structural genomics of
infectious diseases; 2.10A {Vibrio cholerae o1 biovar el
tor}
Length = 271
Score = 377 bits (970), Expect = e-133
Identities = 88/262 (33%), Positives = 142/262 (54%), Gaps = 2/262 (0%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
F RL + A +P++T GDP+ + ++ L G+D +ELG+P+SDPLADGP
Sbjct: 7 YQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPT 66
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQ-MSCPIALFTYYNPILKRGVDNFMSTVRDIGI 168
IQ A R+LA T + ++ ++ + PI L Y N + RG+D+F + G+
Sbjct: 67 IQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGV 126
Query: 169 RGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228
+++ DVP E++ A K I+ + PT + ++A+ + +G+ YL+S GVT
Sbjct: 127 DSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRAGVT 186
Query: 229 GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288
GA + V LL +++ P +GFGIS+P V+Q GA G I GSA+VK++
Sbjct: 187 GAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGSAVVKIIET 246
Query: 289 -AQSPEEGLKELEKFAKSLKSA 309
+P + L EL F +++K A
Sbjct: 247 HLDNPAKQLTELANFTQAMKKA 268
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P
initiative, RSGI, structural genomics, lyase; HET: CIT;
1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Length = 271
Score = 364 bits (937), Expect = e-128
Identities = 98/260 (37%), Positives = 150/260 (57%), Gaps = 3/260 (1%)
Query: 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVI 110
E F + + +G+ ALIPY+TAG P +A++ + +D++E+G+PYSDPL DGPVI
Sbjct: 4 LEAFAKARSEGRAALIPYLTAGFPSREGFLQAVEEVLP-YADLLEIGLPYSDPLGDGPVI 62
Query: 111 QAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRG 170
Q A+ +L +G + L +++EV P+ L TY NP+L G + F + G G
Sbjct: 63 QRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATG 122
Query: 171 LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA 230
+++PD+P +E L + A + +E V PT+ R+ +V + GFVY VS GVTG
Sbjct: 123 VILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGM 182
Query: 231 RASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQ 290
R + V+ L+R IK + PVAVGFG+S Q A ADGV+VGSA+V+ L E +
Sbjct: 183 RERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQAA--VADGVVVGSALVRALEEGR 240
Query: 291 SPEEGLKELEKFAKSLKSAL 310
S L+E+ + + L++
Sbjct: 241 SLAPLLQEIRQGLQRLEANP 260
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for
structural genomics of infec diseases, csgid, lyase;
2.37A {Campylobacter jejuni}
Length = 252
Score = 356 bits (917), Expect = e-125
Identities = 84/252 (33%), Positives = 147/252 (58%), Gaps = 4/252 (1%)
Query: 53 TFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQA 112
K + A + Y G P+L T+ L+ LD DI+ELGV YSDP+ADG +I
Sbjct: 4 MVDFRKFYKENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIAD 63
Query: 113 AATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLV 172
AA +L +G + +++ +L + + + YYN I G++ F+ + +GI L+
Sbjct: 64 AAKIALDQGVDIHSVFELLARIKTKK--ALVFMVYYNLIFSYGLEKFVKKAKSLGICALI 121
Query: 173 VPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARA 232
VP++ EE++ L KE + I L+ + TTP +R+K +V+ ++GF+YL++SIG+TG ++
Sbjct: 122 VPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYLLASIGITGTKS 181
Query: 233 SISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSP 292
+Q ++EI+ + P+ VGFGI + V+++ ADGVIVG+++VK + +
Sbjct: 182 VEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKV-ADGVIVGTSIVKCFKQG-NL 239
Query: 293 EEGLKELEKFAK 304
+ +K++E+ K
Sbjct: 240 DIIMKDIEEIFK 251
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ
furiosus, X-RAY analysis, stability, calorimetry, lyase;
2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A*
2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Length = 248
Score = 356 bits (917), Expect = e-125
Identities = 104/248 (41%), Positives = 142/248 (57%), Gaps = 3/248 (1%)
Query: 60 QGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLA 119
+LIPY+TAGDPD +T L LD + IELG+P+SDP+ADG IQ + R+L
Sbjct: 2 FKDGSLIPYLTAGDPDKQSTLNFLLALDE-YAGAIELGIPFSDPIADGKTIQESHYRALK 60
Query: 120 RGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLE 179
G ++KE S PI L TYYNPI + GV NF++ + G+ G++V D+P+
Sbjct: 61 NGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVF 120
Query: 180 ETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQ 239
+ + A + I+ V P TP +R+K I + + GFVYLVS G TGAR I
Sbjct: 121 HAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAY 180
Query: 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 299
LLR K VAVGFG+SK EHV + GA+GV+VGSA+VK++GE E + L
Sbjct: 181 DLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEK--GREATEFL 238
Query: 300 EKFAKSLK 307
+K + L
Sbjct: 239 KKKVEELL 246
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics,
lyase, NPPSFA, national project on PROT structural and
functional analyses; 2.00A {Aquifex aeolicus}
Length = 262
Score = 351 bits (904), Expect = e-123
Identities = 102/263 (38%), Positives = 152/263 (57%), Gaps = 8/263 (3%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
+++ FT LK++ + AL+ Y+ G PD T+ +A K + G+DI+E+G P+SDP+ADGP
Sbjct: 4 ISDKFTELKEKREKALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPT 63
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQMS-CPIALFTYYNPILKRGVDNFMSTVRDIGI 168
IQ A +L G F +L + + + + P L TYYNPI + G++ F R+ GI
Sbjct: 64 IQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGI 123
Query: 169 RGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228
G +VPD+P EE E L+ K + V PT+ R+K I EA++ Y VS G T
Sbjct: 124 DGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVSVTGTT 183
Query: 229 GARASISG-HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287
GAR + ++ + E +E KPV VGFG+SK EH +++ + ADGV+VGSA+VKL G
Sbjct: 184 GAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHAREIGSF-ADGVVVGSALVKLAG 242
Query: 288 EAQSPEEGLKELEKFAKSLKSAL 310
+ +++L K LK L
Sbjct: 243 QK-----KIEDLGNLVKELKEGL 260
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A
{Bacillus subtilis} SCOP: c.1.4.1
Length = 240
Score = 62.0 bits (150), Expect = 2e-11
Identities = 44/256 (17%), Positives = 77/256 (30%), Gaps = 62/256 (24%)
Query: 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132
DP+ E L++L G+D + +G + G + +L M+
Sbjct: 16 DPNKDLPDEQLEILCESGTDAVIIGG--------------------SDGVTEDNVLRMMS 55
Query: 133 EVVPQMSCPIALFTYYNPILKRGVDNFM------STVRD----------IGIRGLVVPDV 176
+V + P L + G D + S D L+ +
Sbjct: 56 KVR-RFLVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEE 114
Query: 177 PLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE----GFVYLVSSIGVTGARA 232
+ E + K + D + A SE YL S +
Sbjct: 115 IVAEGYCIAN--PDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEYSGVL----- 167
Query: 233 SISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSP 292
G ++ + + T + G GI E +Q A AD ++VG+A+
Sbjct: 168 ---GDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAV---------- 213
Query: 293 EEGLKELEKFAKSLKS 308
E K ++K
Sbjct: 214 YEDFDRALKTVAAVKG 229
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 50.8 bits (121), Expect = 1e-07
Identities = 36/229 (15%), Positives = 66/229 (28%), Gaps = 32/229 (13%)
Query: 75 DLSTTAEALKLLDSCGS--DIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132
D T A + DIIE+G + +G A R L +L+ K
Sbjct: 11 DNQTMDSAYETTRLIAEEVDIIEVGTILC--VGEGV----RAVRDLKALYPHKIVLADAK 64
Query: 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNK 192
+ D TV + + A +
Sbjct: 65 IADAG-------KILSRMCFEANAD--WVTVICCA---------DINTAKGALDVAKEFN 106
Query: 193 IELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKP 252
++ + T ++ + +A G V S A + T ++ + +
Sbjct: 107 GDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGF-K 165
Query: 253 VAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301
V V G+ E + G I G ++ A SP E ++ ++
Sbjct: 166 VTVTGGL-ALEDLPLFKGIPIHVFIAGRSIRD----AASPVEAARQFKR 209
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 48.1 bits (114), Expect = 6e-07
Identities = 44/231 (19%), Positives = 71/231 (30%), Gaps = 38/231 (16%)
Query: 75 DLSTTAEALKLLDSCGS--DIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132
DL +T AL+L DIIELG P A+G ++++ +K
Sbjct: 8 DLLSTEAALELAGKVAEYVDIIELGTPLI--KAEGL-----------------SVITAVK 48
Query: 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEET-ESLQKEAMKN 191
+ P + T + G + V + T K A +
Sbjct: 49 KAHPDKIVFADMKTMDAG------ELEADIAFKAGADLVTVLGSADDSTIAGAVKAAQAH 102
Query: 192 KIE-LVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST 250
+V R + + FV + + + G L E +
Sbjct: 103 NKGVVVDLIGIEDKATRAQEVRALGAKFVEMHAGLDEQAK----PGFDLNGLLAAGEKAR 158
Query: 251 KPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301
P +V G+ K + V GA+ + G A+ A P KEL
Sbjct: 159 VPFSVAGGV-KVATIPAVQKAGAEVAVAGGAIYG----AADPAAAAKELRA 204
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 2e-06
Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 59/199 (29%)
Query: 28 KSTLSLKRFT-PMAALTASPTVGLAETFTRLKKQGKVALIP------------YITAGDP 74
K LS +FT P A A F LK +G LIP Y A
Sbjct: 1723 KGLLSATQFTQP-ALTLME----KA-AFEDLKSKG---LIPADATFAGHSLGEY-AA--- 1769
Query: 75 DLSTTAEALKLLDSCGSDIIEL----G------VPYSDPLADGPVIQAAATRSLARGTNF 124
L++ A+ + + ++E+ G VP + + A +A +
Sbjct: 1770 -LASLADVMSI-----ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 125 NAILSMLKEVVPQMS--CPIALFTYYN-P----IL---KRGVDNFMSTVRDIGIRGLVVP 174
A+ +++ V + I YN + R +D + + I ++ +
Sbjct: 1824 EALQYVVERVGKRTGWLVEIV---NYNVENQQYVAAGDLRALDTVTNVLNFIKLQK--ID 1878
Query: 175 DVPLEETESLQKEAMKNKI 193
+ L+++ SL++ ++ +
Sbjct: 1879 IIELQKSLSLEE--VEGHL 1895
Score = 35.0 bits (80), Expect = 0.033
Identities = 31/183 (16%), Positives = 52/183 (28%), Gaps = 56/183 (30%)
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR 169
+ A +TR L LS + + P A F + L+ + F + +
Sbjct: 1 MDAYSTRPL--------TLS-HGSLEHVLLVPTASFFIAS-QLQ---EQFNKILPE-PTE 46
Query: 170 GLVVPDVP---LE-----------ETESLQKEAMKNKIELVL--FTT------------- 200
G D P E E + + L L F
Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 201 -----PTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV 255
T + K +++ Y+ + I R L R + E + + VA+
Sbjct: 107 KLLQENDTTLVKTKELIKN-----YITARI--MAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 256 GFG 258
FG
Sbjct: 160 -FG 161
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces
ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Length = 286
Score = 47.6 bits (112), Expect = 2e-06
Identities = 41/281 (14%), Positives = 68/281 (24%), Gaps = 36/281 (12%)
Query: 43 TASPTVGLAETFTRLKKQGK--VALIPYITAGDPDLSTTAEALKLLD---SCGSDIIELG 97
A P RL++ V +I DP EA++ G + L
Sbjct: 20 AAPPLWRPGRVLARLREHQPGPVHII------DPFKVPVTEAVEKAAELTRLGFAAVLLA 73
Query: 98 VPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQMSCPIALFTYYNPILKRGV 156
S ++ T +L A +L G
Sbjct: 74 ---STDYESFESHMEPYVAAVKAATPLPVVLHFPPRPGAGFPVVRGADALLLPALLGSGD 130
Query: 157 DNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMK-NKIELVLFTTPTTPTDRMK------ 209
D F+ + E E L A+ + T P
Sbjct: 131 DYFVWKSFLETLAAFPGRIPREEWPELLLTVALTFGEDPRTGDLLGTVPVSTASTEEIDR 190
Query: 210 -AIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQV 268
V + GF + + H + L + + V + V +
Sbjct: 191 YLHVARAFGFHMVYLYSRNEHVPPEVVRHFRKGLGP-----DQVLFVSGNVRSGRQVTEY 245
Query: 269 AGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 309
GAD V A+ + + L + A +A
Sbjct: 246 LDSGADYVGFAGALEQ--------PDWRSALAEIAGRRPAA 278
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase;
non-canonical TIM-barrel, prenyltransferase, archaeal
lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus
fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Length = 234
Score = 46.7 bits (110), Expect = 3e-06
Identities = 29/236 (12%), Positives = 66/236 (27%), Gaps = 52/236 (22%)
Query: 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132
DPD + T E +K + G+D + + + + ++++
Sbjct: 16 DPDRTNTDEIIKAVADSGTDAVMISG--------------------TQNVTYEKARTLIE 55
Query: 133 EVVPQMSCPIALFTYYNPILKRGVDNFM---------------------STVRDIGIRGL 171
+V Q PI + + VD + +
Sbjct: 56 KVS-QYGLPIVVEPSDPSNVVYDVDYLFVPTVLNSADGDWITGKHAQWVRMHYENLQKFT 114
Query: 172 VVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASE---GFVYLVSSIGVT 228
+ + + E + + V + + E + T
Sbjct: 115 EIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYALVGEKLFNLPIIYIEYSGT 174
Query: 229 GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284
+ V+ +L + + G GI E +++ AD +IVG+ + +
Sbjct: 175 YGNPELVAEVKKVLDKA------RLFYGGGIDSREKAREMLR-YADTIIVGNVIYE 223
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 44.2 bits (104), Expect = 2e-05
Identities = 34/238 (14%), Positives = 67/238 (28%), Gaps = 44/238 (18%)
Query: 75 DLSTTAEALKLLDSCGS--DIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132
D + +A+ + + S D+IE+G + A+G +S L+
Sbjct: 14 DQTNLTDAVAVASNVASYVDVIEVGTILA--FAEGM-----------------KAVSTLR 54
Query: 133 EVVPQMSCPIAL------FTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQK 186
P + + G D V + + +K
Sbjct: 55 HNHPNHILVCDMKTTDGGAILSRMAFEAGADWIT-----------VSAAAHIATIAACKK 103
Query: 187 EAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIK 246
A + E+ + KA V+ S A + +R++
Sbjct: 104 VADELNGEIQIEIYGNWTMQDAKAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQLS 163
Query: 247 ESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAK 304
+++ GI PE + G I G A+ A+ + E+ +
Sbjct: 164 ALGI-ELSITGGI-VPEDIYLFEGIKTKTFIAGRALAG----AEGQQTAAALREQIDR 215
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 43.0 bits (101), Expect = 4e-05
Identities = 37/229 (16%), Positives = 68/229 (29%), Gaps = 29/229 (12%)
Query: 75 DLSTTAEALKLLDSCGS--DIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132
D S A+ S G+ D+IE G L G L L K
Sbjct: 13 DHSNLKGAITAAVSVGNEVDVIEAGTVCL--LQVGS----ELVEVLRS-------LFPDK 59
Query: 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNK 192
+V C A T RG D T ++ ++ +K
Sbjct: 60 IIVADTKCADAGGTVAKNNAVRGAD--WMTCICSA------TIPTMKAARKAIEDINPDK 111
Query: 193 IELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKP 252
E+ + D+ + ++A S A + ++++ E
Sbjct: 112 GEIQVELYGDWTYDQAQQWLDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLIEMG-FR 170
Query: 253 VAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301
V+V G+ + ++ G I G + + A++P + +
Sbjct: 171 VSVTGGL-SVDTLKLFEGVDVFTFIAGRGITE----AKNPAGAARAFKD 214
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 9e-05
Identities = 25/122 (20%), Positives = 38/122 (31%), Gaps = 25/122 (20%)
Query: 12 HLKNP-HAHYLPRLPCHKSTLSLKRFTPMAA------LTASPTVGLAETFTRLKKQGKVA 64
HLKN H + L RF + + + + T +LK
Sbjct: 480 HLKNIEHPERMTLFR--MVFLDF-RF--LEQKIRHDSTAWNASGSILNTLQQLKFYKP-- 532
Query: 65 LIPYITAGDPDLSTTAEAL-KLLDSCGSDIIELGVPYSDPL-----ADGPVIQAAATRSL 118
YI DP A+ L ++I Y+D L A+ I A + +
Sbjct: 533 ---YICDNDPKYERLVNAILDFLPKIEENLIC--SKYTDLLRIALMAEDEAIFEEAHKQV 587
Query: 119 AR 120
R
Sbjct: 588 QR 589
Score = 37.9 bits (87), Expect = 0.004
Identities = 37/284 (13%), Positives = 81/284 (28%), Gaps = 58/284 (20%)
Query: 54 FTRLKKQGKVALIPYI-TAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQA 112
F L + + + ++ + +K S + + + D L + Q
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--QV 125
Query: 113 AATRSLARGTNFNAILSMLKEVVPQ-------M-----SCPIALFTYYNPILKRGVDN-- 158
A +++R + + L E+ P + + +AL + ++ +D
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKI 184
Query: 159 FMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGF 218
F +++ P+ LE + L + N + R I
Sbjct: 185 FWLNLKNCNS-----PETVLEMLQKLLYQIDPNWTSRSDH--SSNIKLR---IHSIQAEL 234
Query: 219 VYLVSSIGVTGARASISGHVQTL--LREIKESST-KPVAVGFG-----ISKPEHVQQVAG 270
L+ S + L L ++ + A ++ + V
Sbjct: 235 RRLLKS----------KPYENCLLVLLNVQNAKAWN--AFNLSCKILLTTRFKQV----- 277
Query: 271 WGADGVIVGSAMVKLLGEAQ---SPEEGLKELEKFAKSLKSALP 311
D + + L +P+E L K+ LP
Sbjct: 278 --TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T
structural genomics consortium, TBSGC, lyase; 1.29A
{Mycobacterium tuberculosis}
Length = 272
Score = 39.9 bits (94), Expect = 5e-04
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 258 GISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSALP 311
G+ + AG GAD V+VG +V + P + +L + P
Sbjct: 221 GVRGTADLLAYAGAGADAVLVGEGLVT----SGDPRAAVADL--VTAGTHPSCP 268
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 39.5 bits (92), Expect = 6e-04
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 226 GVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281
G T +G L+ + ++ V I PE +++ G G++VG A
Sbjct: 163 GYTPYSRQEAGPDVALIEALCKAGI-AVIAEGKIHSPEEAKKINDLGVAGIVVGGA 217
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase;
1.65A {Salmonella typhimurium}
Length = 211
Score = 38.6 bits (90), Expect = 0.001
Identities = 46/243 (18%), Positives = 79/243 (32%), Gaps = 48/243 (19%)
Query: 75 DLSTTAEALKLLDSCGS--DIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132
D T EA+ +D DIIE+G P+ + +G + +K
Sbjct: 8 DELTLPEAMVFMDKVVDDVDIIEVGTPFL--IREGV-----------------NAIKAIK 48
Query: 133 EVVPQ------MSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQK 186
E P + G D TV + + ++ ++
Sbjct: 49 EKYPHKEVLADAKIMDGGHFESQLLFDAGAD--YVTVLGVT------DVLTIQSC--IRA 98
Query: 187 EAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIK 246
K +V R++ + EA + + + +A+ + L+ +K
Sbjct: 99 AKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTD---QQAAGRKPIDDLITMLK 155
Query: 247 ESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 306
+AV GI + V+ A G D VIVGSA+ A P E K ++ L
Sbjct: 156 VRRKARIAVAGGI-SSQTVKDYALLGPDVVIVGSAITH----AADPAG---EARKISQVL 207
Query: 307 KSA 309
Sbjct: 208 LQH 210
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel,
ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 38.5 bits (89), Expect = 0.001
Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 19/191 (9%)
Query: 102 DPLADGPVIQAAATRSLARGTNFNAILSM--LKEVVPQMSCPIALFTYYNPILKRGVDN- 158
P+ ++ A A + + G I + L+ V P +S PI I+KR +
Sbjct: 30 SPMDKPEIVAAMAQAAASAGAVAVRIEGIENLRTVRPHLSVPII------GIIKRDLTGS 83
Query: 159 ------FMSTVRDIGIRG--LVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKA 210
++ V + G ++ D + L T +
Sbjct: 84 PVRITPYLQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVN-EG 142
Query: 211 IVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAG 270
I +G ++ +++ + ++ ++ + V + P
Sbjct: 143 ISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHAGC-RVIAEGRYNTPALAANAIE 201
Query: 271 WGADGVIVGSA 281
GA V VGSA
Sbjct: 202 HGAWAVTVGSA 212
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics,
ssgcid, seattle structural GE center for infectious
disease, lyase; 2.15A {Brucella melitensis}
Length = 272
Score = 38.7 bits (91), Expect = 0.001
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 258 GISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 299
GI E ++ G ++G ++++ + L
Sbjct: 228 GIFTHEDCLRLEKSGIGTFLIGESLMR----QHDVAAATRAL 265
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism,
sugars, csgid, carbohydrate metabolism, isomerase; HET:
MSE 16G; 1.50A {Salmonella enterica subsp}
Length = 232
Score = 38.1 bits (88), Expect = 0.002
Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 3/100 (3%)
Query: 182 ESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTL 241
+++ + +L + D A G + +++ + L
Sbjct: 116 VAVEALLARIHHHHLLTMADCSSVDDGLACQRL--GADIIGTTMSGYTTPDTPEEPDLPL 173
Query: 242 LREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281
++ + ++ + +A G + P + +GA V VGSA
Sbjct: 174 VKALHDAGCRVIAEG-RYNSPALAAEAIRYGAWAVTVGSA 212
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.2 bits (85), Expect = 0.002
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 185 QKEAMKNKIE--LVLFTTPTTPTDRMKAIVE 213
+K+A+K K++ L L+ + P +KA +E
Sbjct: 18 EKQALK-KLQASLKLYADDSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 0.76
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 13/29 (44%)
Query: 288 EAQSPEEGLKELEKFAKSLK-----SALP 311
E Q+ LK+L+ SLK SA P
Sbjct: 18 EKQA----LKKLQ---ASLKLYADDSA-P 38
Score = 28.0 bits (61), Expect = 2.5
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 9/31 (29%)
Query: 28 KSTL-----SLKRFTPMAALTASPTVGLAET 53
K L SLK + +A P + + T
Sbjct: 19 KQALKKLQASLKLYADDSA----PALAIKAT 45
Score = 27.2 bits (59), Expect = 5.3
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 5/22 (22%)
Query: 243 REIK--ESSTKPVAVGFGISKP 262
+ +K ++S K A S P
Sbjct: 20 QALKKLQASLKLYADD---SAP 38
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 37.2 bits (86), Expect = 0.004
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281
L+++ +S V + P+ ++V G +VG A
Sbjct: 165 QFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGA 206
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of
dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN;
1.60A {Thermoanaerobacter pseudethanolicus AT} PDB:
3krz_A*
Length = 343
Score = 34.4 bits (80), Expect = 0.036
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 222 VSSIGVTGARASISGHVQT-LLREIKESSTKPV-AVGFGISKPEHVQQVAGWG-ADGVIV 278
VSS G+ ++ Q IK+ AVG I+ E +++ AD V +
Sbjct: 248 VSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVG-LITTQELAEEILSNERADLVAL 306
Query: 279 GSAM 282
G +
Sbjct: 307 GREL 310
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN,
beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis}
SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Length = 338
Score = 34.4 bits (80), Expect = 0.041
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 222 VSSIGVTGARASISGHVQT-LLREIKESSTKPV-AVGFGISKPEHVQQVAGWG-ADGVIV 278
SS + A ++ Q +I+E + AVG I+ +++ G AD + +
Sbjct: 248 CSSGALVHADINVFPGYQVSFAEKIREQADMATGAVG-MITDGSMAEEILQNGRADLIFI 306
Query: 279 GSAM 282
G +
Sbjct: 307 GREL 310
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel,
oxidoreductase, flavoprotein; HET: FMN; 2.30A
{Geobacillus kaustophilus} PDB: 3gr8_A*
Length = 340
Score = 34.0 bits (79), Expect = 0.050
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 222 VSSIGVTGARASISGHVQT-LLREIKESSTKPV-AVGFGISKPEHVQQVAGWG-ADGVIV 278
VSS + AR ++ Q I+ + P AVG I+ +++ G AD V +
Sbjct: 248 VSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVG-LITSGWQAEEILQNGRADLVFL 306
Query: 279 GSAM 282
G +
Sbjct: 307 GREL 310
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino]
imidazole-4-carboxamide...; TIM alpha/beta barrel; HET:
CIT; 1.30A {Saccharomyces cerevisiae}
Length = 260
Score = 33.2 bits (76), Expect = 0.070
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 243 REIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKF 302
RE + S + + VG GI+ ++ + A VIV S + G Q + L+ L +
Sbjct: 69 REALQESPQFLQVGGGINDTNCLEWLKW--ASKVIVTSWLFTKEGHFQ--LKRLERLTEL 124
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol-
4-carboxamid ribonucleotid...; isomerase, histidine
biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1
PDB: 2cff_A 2w79_A
Length = 241
Score = 32.9 bits (76), Expect = 0.082
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 19/73 (26%)
Query: 241 LLREIKESSTKPVAVGFGISKPEHVQQVA------GWGADGVIVGSAMVKLLGEAQSPEE 294
L ++I + V GIS ++ GVIVG A L E
Sbjct: 179 LTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRA---FL-------E 228
Query: 295 G---LKELEKFAK 304
G ++ ++++A+
Sbjct: 229 GILTVEVMKRYAR 241
Score = 30.6 bits (70), Expect = 0.45
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 241 LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELE 300
+L ++ E + + +G GI ++ +++ G IV S +++ P LK L
Sbjct: 65 VLEKLSEFAE-HIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE------DPSF-LKSLR 116
Query: 301 KF 302
+
Sbjct: 117 EI 118
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis,
TIM-barrel, His biosynthesis, tryptophan biosynthesis;
HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A
2y85_A*
Length = 244
Score = 32.9 bits (76), Expect = 0.084
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284
LL E+ V + GI E + G V VG+A ++
Sbjct: 63 HELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALE 108
Score = 32.5 bits (75), Expect = 0.11
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 241 LLREIKESSTKPVAVGFGISKPEHV---QQVAGWGADGVIVGSA 281
LL + + + PV G+S + + + G +G IVG A
Sbjct: 184 LLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKA 227
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan
biosynthesis; 1.8A {Streptomyces coelicolor} SCOP:
c.1.2.1 PDB: 2vep_A 2x30_A
Length = 244
Score = 32.9 bits (76), Expect = 0.086
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 241 LLREIKESSTKPVAVGFGISKPEHVQQVAG---WGADGVIVGSA 281
LL+ + ++ +PV G+S + ++ +AG G +G IVG A
Sbjct: 181 LLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 224
Score = 32.5 bits (75), Expect = 0.12
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284
+ L+ E+ ++ V + GI + + G V +G+A ++
Sbjct: 64 RALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALE 109
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural
genomics, protein structure initiative, PSI; 2.90A
{Pseudomonas aeruginosa} SCOP: c.1.31.1
Length = 265
Score = 33.0 bits (76), Expect = 0.092
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 242 LREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282
LR I E + PV V G+ G + V++ +A+
Sbjct: 179 LRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAI 219
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein
structure initiative, PSI, NESG, northeast structural
genomics consortium; 1.80A {Bacillus subtilis} SCOP:
c.1.31.1 PDB: 1tyg_A
Length = 264
Score = 32.9 bits (76), Expect = 0.097
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 242 LREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282
L I E + PV V GI P+ GADGV++ +A+
Sbjct: 170 LSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAV 210
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan
biosynthesis, riken structural genomics/PR initiative,
RSGI, structural genomics; 1.80A {Thermus thermophilus}
SCOP: c.1.2.4
Length = 254
Score = 32.9 bits (76), Expect = 0.11
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 258 GISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 299
G S+ E ++ + G D V++G+++++ A E L+EL
Sbjct: 216 GYSRKEELKALEG-LFDAVLIGTSLMR----APDLEAALREL 252
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A
{Pyrococcus woesei} SCOP: c.1.1.1
Length = 225
Score = 32.3 bits (74), Expect = 0.13
Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 15/132 (11%)
Query: 176 VPLEETESLQKEAMKNKIELVL---FTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARA 232
+ L + E+ + A + + ++ + + A E IG TG
Sbjct: 101 MILADLEAAIRRAEEVGLMTMVCSNNPAVSAAVAALNPDYVAVE----PPELIG-TGIPV 155
Query: 233 SIS--GHVQTLLREIKESSTK-PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA 289
S + + + +K+ + + V G GIS E V++ G GV++ S + K A
Sbjct: 156 SKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTK----A 211
Query: 290 QSPEEGLKELEK 301
+ PE+ + +L
Sbjct: 212 KDPEKAIWDLVS 223
>2v9l_A Rhamnulose-1-phosphate aldolase; entropy index, metal-binding,
oligomerization, zinc, lyase, class II, cytoplasm; HET:
PGO; 1.23A {Escherichia coli} PDB: 2uyv_A* 1ojr_A
2v9g_A* 1gt7_A* 2v9n_A* 2uyu_A* 2v9m_A* 2v9o_A 2v9e_A
2v9f_A 2v9i_A 2v29_A 2v2a_A* 2v2b_A
Length = 274
Score = 32.2 bits (73), Expect = 0.15
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 8/74 (10%)
Query: 17 HAHYLPRLPCHKSTLSLKRFTPMAALTASPTVGLAETFTRLKKQGKVALIPYITAGDPDL 76
H H + L+ A T G E V ++P++ G +
Sbjct: 141 HCH-----ATNLIALTYVLENDTAVFTRQLWEGSTECLVVFP--DGVGILPWMVPGTDAI 193
Query: 77 S-TTAEALKLLDSC 89
TA+ ++
Sbjct: 194 GQATAQEMQKHSLV 207
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase
and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4
c.1.2.4 PDB: 1jcm_P* 2kzh_A
Length = 452
Score = 32.7 bits (75), Expect = 0.16
Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 258 GISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 299
GI+ V++++ A+G ++GSA++ ++ +
Sbjct: 216 GINTYAQVRELSH-FANGFLIGSALMA----HDDLHAAVRRV 252
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A
{Thermoproteus tenax} SCOP: c.1.1.1
Length = 226
Score = 31.4 bits (72), Expect = 0.28
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 225 IGVTGARASIS--GHVQTLLREIKESSTK-PVAVGFGISKPEHVQQVAGWGADGVIVGSA 281
IG TG S + + + + V G GI + V G GV++ SA
Sbjct: 146 IG-TGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASA 204
Query: 282 MVKLLGEAQSPEEGLKELEKFAKSLK 307
VK A+ P + EL K L+
Sbjct: 205 AVK----AKDPYAKIVELAKPLSELR 226
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase,
phosphate-binding motif; 2.04A {Escherichia coli} PDB:
3cqi_A 3cqh_A 3cqk_A
Length = 295
Score = 31.6 bits (72), Expect = 0.29
Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 22/148 (14%)
Query: 56 RLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLA---DGPVIQA 112
L KQ + + E L+L + G D +E+ V +D D Q
Sbjct: 12 SLSKQIPLGIYEKALPAGECW---LERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQR 68
Query: 113 AATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNP-ILKRGVDNFMSTVR---DIGI 168
A + T + SM + P+ + + +G++ ++ D+GI
Sbjct: 69 LALVNAIVETGV-RVPSMC--LSAHRRFPLGSE---DDAVRAQGLEIMRKAIQFAQDVGI 122
Query: 169 RGLVV------PDVPLEETESLQKEAMK 190
R + + ET ++ +K
Sbjct: 123 RVIQLAGYDVYYQEANNETRRRFRDGLK 150
>3uy7_A KEMP eliminase KE59 R1 7/10H; structural genomics, israel
structural proteomics center, is barrel, lyase; 1.45A
{Escherichia coli} PDB: 3uxd_A* 3uxa_A* 3nyz_A 3nz1_A*
3uy8_A 3uyc_A 3uzj_A 3uz5_A 1igs_A 1juk_A 1jul_A* 3tc7_A
3tc6_A 1a53_A* 1lbf_A* 1lbl_A* 3nl8_A* 3nxf_A* 3o6y_X
3ud6_A* ...
Length = 252
Score = 31.4 bits (72), Expect = 0.29
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 258 GISKPEHVQQVAGWGADGVIVGSAMVK 284
GIS+ ++++ G + +GS++++
Sbjct: 212 GISERNEIEELRKLGVNAFEIGSSLMR 238
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides,
nucleotides, nucleo nucleoside interconversions, spine,
structural genomics; 1.80A {Bacillus anthracis} PDB:
2a1y_A*
Length = 336
Score = 31.1 bits (71), Expect = 0.43
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGH---VQTLLREIKESSTKPVAVGFGISKP 262
+ ++ + Y+ I GH V +++ IK+ + + + P
Sbjct: 109 EFVQQLAAEHLTPEYITIDIA--------HGHSNAVINMIQHIKKHLPESFVIAGNVGTP 160
Query: 263 EHVQQVAGWGADGVIVG 279
E V+++ GAD VG
Sbjct: 161 EAVRELENAGADATKVG 177
>3quf_A Extracellular solute-binding protein, family 1; structural
genomics, PSI-biology, midwest center for structu
genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum
subsp}
Length = 414
Score = 30.9 bits (70), Expect = 0.48
Identities = 11/64 (17%), Positives = 19/64 (29%)
Query: 244 EIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFA 303
E V F +K V + K++ S ++ K L+
Sbjct: 349 EPPAELKDVVDNYFKQNKFYWVNWPKSPTVMSTEGIAQQQKIVQGQISAKDAAKALDAKW 408
Query: 304 KSLK 307
+LK
Sbjct: 409 ATLK 412
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid,
hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1
d.17.1.4
Length = 367
Score = 30.7 bits (68), Expect = 0.52
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 3/124 (2%)
Query: 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT 205
+YY P++K G + T+ L + + + K+ ++ + T
Sbjct: 66 SYYYPVIKDGKIVYTLTLSPKNKDDLNKSKEDMNYSVKISNFIAKDLDQIKDKNSNITVL 125
Query: 206 DRMKAIVEASEGFVYLV---SSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKP 262
K +G V LV + S L +E+K + T +
Sbjct: 126 TDEKGFYFEEDGKVRLVKATPLANNIKEKESAKTVSPQLKQELKTTVTPTKVEENEAIQE 185
Query: 263 EHVQ 266
+ VQ
Sbjct: 186 DQVQ 189
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.64
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 174 PDVPLEETESLQKEAMKNKIEL 195
D +E ES++K + + L
Sbjct: 77 ADRLTQEPESIRKWREEQRKRL 98
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural
genomics, joint center for structural genomics, JCSG;
HET: CIT; 1.85A {Parabacteroides distasonis}
Length = 262
Score = 30.2 bits (68), Expect = 0.78
Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 19/167 (11%)
Query: 58 KKQG-KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATR 116
+K G ++ + Y + L EAL G IE+ + G +
Sbjct: 6 EKNGWRLGMQSY-SFHLFPL---TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFN-- 59
Query: 117 SLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDV 176
I + I Y + + + + +
Sbjct: 60 --LDAQTQKEIKELAAS----KGIKIVGTGVYVAEKSSDWEKMFKFAKAMDLEFITCE-P 112
Query: 177 PLEETESLQKEAMKNKIELVL-----FTTPTTPTDRMKAIVEASEGF 218
L + + ++K + + I++ + + P + +KAI S+
Sbjct: 113 ALSDWDLVEKLSKQYNIKISVHNHPQPSDYWKPENLLKAISGRSQSL 159
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A
{Methanocaldococcus jannaschii}
Length = 219
Score = 29.9 bits (68), Expect = 0.93
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Query: 225 IG----VTGARASISGHVQTLLREIKESSTK-PVAVGFGISKPEHVQQVAGWGADGVIVG 279
IG V+ A + V+ +R +KE + V G GISK E V+ GA+GV++
Sbjct: 143 IGTGIPVSKANPEV---VEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLA 199
Query: 280 SAMVKLLGEAQSPEEGLKELEK 301
S +VK A++ EE ++EL K
Sbjct: 200 SGVVK----AKNVEEAIRELIK 217
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo
protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Length = 247
Score = 29.8 bits (68), Expect = 0.93
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 241 LLREIKESSTKPV-AVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284
++R ++ +T P+ A G G K EH + GAD V + +A V+
Sbjct: 191 MIRFVRPLTTLPIIASG-GAGKMEHFLEAFLRGADKVSINTAAVE 234
Score = 28.2 bits (64), Expect = 3.1
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 252 PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK---LLGEA 289
P+ G K EH + GAD V + +A V+ L+ +
Sbjct: 81 PIIASGGAGKMEHFLEAFLRGADKVSINTAAVENPSLITQI 121
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
3bw3_A*
Length = 369
Score = 30.0 bits (68), Expect = 1.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSA 281
+LL +++E+ PV GI + + V GAD +G+A
Sbjct: 198 SLLAQVREAVDIPVVAAGGIMRGGQIAAVLAAGADAAQLGTA 239
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural
genomics, PSI-2, protein structu initiative; HET: MSE
GOL; 1.90A {Vibrio fischeri}
Length = 141
Score = 28.6 bits (65), Expect = 1.2
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 165 DIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVE 213
D + + + + L++ K+ I VL P+ + K I+E
Sbjct: 38 DRKKHKTTMQGITIYRPKYLERLIKKHCISTVLLAVPSASQVQKKVIIE 86
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain,
structural genomics, joint center for STR genomics,
JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc
13032}
Length = 393
Score = 29.8 bits (67), Expect = 1.2
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 200 TPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGI 259
+P + +++A + + ++ +G L+E S PV G G+
Sbjct: 163 SPQNVREIAPIVIKAGADLLVIQGTLISA--EHVNTGGEALNLKEFIGSLDVPVIAG-GV 219
Query: 260 SKPEHVQQVAGWGADGVIVGSA 281
+ + GA G+IVG
Sbjct: 220 NDYTTALHMMRTGAVGIIVGGG 241
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase,
potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB:
2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Length = 351
Score = 29.1 bits (66), Expect = 1.7
Identities = 16/100 (16%), Positives = 41/100 (41%), Gaps = 19/100 (19%)
Query: 188 AMKNKIELVLFTTPTTPTD--RMKAIVEASEGFVYLVSSIGVTGARASI------SGHVQ 239
+ +E + ++ T +D +++ I+EA Y+ + S H
Sbjct: 101 QNPDCLEHLAASSGTGSSDFEQLEQILEAIPQVKYIC-----------LDVANGYSEHFV 149
Query: 240 TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVG 279
++++++ + + + E V+++ GAD + VG
Sbjct: 150 EFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVG 189
>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM
beta/alpha-barrel, PLC-like phosphodiesterase, inactive
H12A phospholipase D; HET: PGE; 1.60A {Loxosceles
intermedia} PDB: 3rlh_A*
Length = 302
Score = 29.0 bits (64), Expect = 2.0
Identities = 33/237 (13%), Positives = 68/237 (28%), Gaps = 41/237 (17%)
Query: 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQA------AATRSLARGTNFNAIL 128
+ E + L G++ IE V + D + R+ + NFN L
Sbjct: 38 AIGQIDEFVNL----GANSIETDVSFDD---NANPEYTYHGIPCDCGRNCKKYENFNDFL 90
Query: 129 SMLKEVV----PQMSCPIALFT--------YYNPILKRGVDNFMSTVRDI------GIRG 170
L+ + + L Y N G + ++ G R
Sbjct: 91 KGLRSATTPGNSKYQEKLVLVVFDLKTGSLYDNQANDAGKKLAKNLLQHYWNNGNNGGRA 150
Query: 171 LVVPDVPLEE--------TESLQKEAMKNKIELVLFT-TPTTPTDRMKAIVEASEGFVYL 221
+V +P + L K+ ++ V + + + + ++
Sbjct: 151 YIVLSIPDLNHYPLIKGFKDQLTKDGHPELMDKVGHDFSGNDDIGDVGKAYKKAGITGHI 210
Query: 222 VSSIGVTGARASISGHVQTLLREIKESSTKPVAV-GFGISKPEHVQQVAGWGADGVI 277
S G+T V + ++ V + + K + G DG++
Sbjct: 211 WQSDGITNCLPRGLSRVNAAVANRDSANGFINKVYYWTVDKRSTTRDALDAGVDGIM 267
>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate
decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A
{Saccharomyces cerevisiae} PDB: 3gdl_A* 3gdk_A* 3gdt_A*
3gdr_A* 1dqw_A 1dqx_A*
Length = 267
Score = 28.5 bits (63), Expect = 2.4
Identities = 29/233 (12%), Positives = 64/233 (27%), Gaps = 28/233 (12%)
Query: 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134
D+ TT E L+L+++ G I L ++L+ NF
Sbjct: 37 DVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRRFAD 96
Query: 135 VPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIE 194
+ Y + + ++ + G+V E + +
Sbjct: 97 IGNTVKL----QYSAGVYRIAEWADITNAHGVVGPGIV-------SGLKQAAEEVTKEPR 145
Query: 195 LVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASI-SGHVQTLLREIKESSTKPV 253
+L + + A+ + I + I + + + +
Sbjct: 146 GLLMLAELSCKGSL-----ATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIM 200
Query: 254 AVGFGISKPE--------HVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKE 298
G G+ V V G+D +IVG + + + + +
Sbjct: 201 TPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGL---FAKGRDAKVEGER 250
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A
{Thermus scotoductus} PDB: 3hf3_A*
Length = 349
Score = 28.6 bits (65), Expect = 2.5
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 222 VSSIGVTGARASISGH--VQT-LLREIKESSTKPV-AVGFGISKPEHVQQVAGWG-ADGV 276
SS GV R I Q +++ AVG I+ PE + + G AD V
Sbjct: 258 CSSGGVV-LRVRIPLAPGFQVPFADAVRKRVGLRTGAVG-LITTPEQAETLLQAGSADLV 315
Query: 277 IVGSAM 282
++G +
Sbjct: 316 LLGRVL 321
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase
bifunctional periplasmic...; APC63187.2; HET: EPE TAM;
2.43A {Klebsiella pneumoniae subsp}
Length = 339
Score = 28.1 bits (63), Expect = 3.4
Identities = 42/237 (17%), Positives = 67/237 (28%), Gaps = 64/237 (27%)
Query: 85 LLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTN-------------FNAILSML 131
L+D D+I+ G P D ++ + + N FN L L
Sbjct: 56 LVD--NGDVIQ-GSPLGD-YMAAKGLKEGDVHPVYKAMNTLNYAVGNLGNHEFNYGLDFL 111
Query: 132 KEVVPQMSCPI------------ALFTYYNPILKRGVDNFMSTVRD--IGIRGLVVPDVP 177
+ + P +FT Y I V + + IG G V P +
Sbjct: 112 HKALAGAKFPYVNANIIDAKTGKPMFTPYL-IQDTRVVDSDGQIHTLRIGYIGFVPPQIM 170
Query: 178 LEETESLQKEAMKNKIELVLFTTPTTPT----DRMKA-----IV-------------EAS 215
+ +L + V T M+A +V +
Sbjct: 171 TWDKANLNGK--------VTVNDITETARKYIPEMRAKGADVVVVVAHSGLSADPYQAMA 222
Query: 216 EGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG 272
E VY +S V G A + GH + ++ K + G WG
Sbjct: 223 ENSVYYLSQ--VPGVDAIMFGHAHAVFPGKDFANIKGADIAKGTLNGVPAVMPGMWG 277
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba
histolytica}
Length = 441
Score = 28.2 bits (64), Expect = 3.7
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 51 AETFTRLKKQGKVALIPYITA-GD-----PDLSTTAEALKLL 86
AET+ LK K T GD P++S EAL LL
Sbjct: 189 AETYQCLKVVIKAKYGQDATNVGDEGGFAPNVSGAREALDLL 230
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural
GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Length = 427
Score = 27.9 bits (63), Expect = 4.2
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 51 AETFTRLKKQGKVALIPYITA-GD-----PDLSTTAEALKLL 86
+E + LK GD P L T+ EAL LL
Sbjct: 189 SEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLL 230
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 27.5 bits (61), Expect = 4.4
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 253 VAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 310
AVG G++ PE++ Q G G +GS + + QS E ++ F K+ + A+
Sbjct: 152 FAVG-GVT-PENLAQWIDAGCAGAGLGSDLYR---AGQSVERTAQQAAAFVKAYREAV 204
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity,
glycolysis, , isothermal titration calorimetry, lyase;
1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A
1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Length = 439
Score = 27.9 bits (63), Expect = 4.5
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 51 AETFTRLKKQGKVALIPYITA-GD-----PDLSTTAEALKLL 86
AE + LK K T GD P++ +EAL+L+
Sbjct: 185 AEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELV 226
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 28.0 bits (63), Expect = 5.1
Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 5/75 (6%)
Query: 218 FVYLVSSIGVTGARASISGHVQTLLRE---IKESSTKPVAVGFGISKPEHVQQVAGWGAD 274
V + +G R + + + PV V + + ++ G D
Sbjct: 534 HVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILERVTNIS--MGSELD 591
Query: 275 GVIVGSAMVKLLGEA 289
V+ + +A
Sbjct: 592 NVMEFEDIADNAADA 606
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide
repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A
{Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3
b.26.1.2 PDB: 2fez_A*
Length = 388
Score = 27.7 bits (62), Expect = 5.2
Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 16/68 (23%)
Query: 51 AETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIEL--GVPYSDPLADGP 108
F K G A AG +A + L + + G D L D
Sbjct: 112 LGRFVAEKTAGVHAA----AAGRF-----EQASRHLSAA----LREWRGPVLDD-LRDFQ 157
Query: 109 VIQAAATR 116
++ AT
Sbjct: 158 FVEPFATA 165
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG,
thermus thermophilus HB8, structural genomics, NPPSFA;
2.30A {Thermus thermophilus}
Length = 268
Score = 27.6 bits (62), Expect = 5.8
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 242 LREIKESSTK--PVAVGFGISKPEHVQQVAGWGADGVIVGSAM 282
L PV V G+ P H +V G D V+V +A+
Sbjct: 168 LELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAI 210
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion
protein, cobalamin, precorrin, novel fold, VIT; 2.10A
{Thermotoga maritima}
Length = 266
Score = 27.1 bits (61), Expect = 6.5
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 252 PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 284
P+ G K EH + GAD + S
Sbjct: 76 PIIASGGAGKMEHFLEAFLAGADKALAASVFHF 108
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A
{Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Length = 256
Score = 27.2 bits (61), Expect = 6.6
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 221 LVSSIGVTGARASISGH--VQTLLREIKESSTK-PVAVGFGISKPEHVQQVAGWGADGVI 277
L +++G G H VQ ++ I ++ G ++ WGA V
Sbjct: 180 LAAALGHLGNA----SHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRYLEWGATFVA 235
Query: 278 VGSAMVKLLGEAQSPEEGLKE 298
VGS + Q + K+
Sbjct: 236 VGSDLGVFRSATQKLADTFKK 256
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein;
solute-binding protein, blood group antigen,
carbohydrate transport; HET: A2G GAL FUC; 2.35A
{Streptococcus pneumoniae}
Length = 430
Score = 27.5 bits (61), Expect = 7.1
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 277 IVGSAMVKLLGEAQSPEEGLKELEKFAKSL 306
+ +A+ + E ++ +K + KSL
Sbjct: 399 AIINALTESAAENVDVDQKVKSTQDVLKSL 428
>3otr_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, alpha-beta barrel, TIM barrel;
2.75A {Toxoplasma gondii}
Length = 452
Score = 27.5 bits (62), Expect = 7.1
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 51 AETFTRLKKQGKVALIPYITA-GD-----PDLSTTAEALKLL 86
+ET+ LK K T GD P+++T EAL LL
Sbjct: 193 SETYHHLKNVIKNKYGLDATNVGDEGGFAPNVATAEEALNLL 234
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal
phosphate, structural genomi NPPSFA; 2.30A
{Methanocaldococcus jannaschii}
Length = 330
Score = 27.1 bits (59), Expect = 7.2
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 219 VYLVSSIGVTGARASISGHVQTLLREIKESSTKPVA--VGFGISKPEHVQQVAGWGADGV 276
V I A I + +L E+K+ PV G++ P + G+DGV
Sbjct: 209 VLENEPIYEGFTLAEIIDGLYEVLLEVKKLGRLPVVNFAAGGVATPADAALMMQLGSDGV 268
Query: 277 IVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 309
VGS + K +++P + A+++ A
Sbjct: 269 FVGSGIFK----SENP-------LERARAIVEA 290
>1pvt_A Sugar-phosphate aldolase; structural genomics, PSI, protein
initiative, midwest center for structural genomics,
MCSG; 2.50A {Thermotoga maritima} SCOP: c.74.1.1
Length = 238
Score = 27.0 bits (60), Expect = 7.6
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%)
Query: 17 HAHYLPRLPCHKSTLSLKRFTPMAALTASPTVGLAETFTRLKKQGKVALIPYITAGDPDL 76
H H P + TL P + + ++++ + G +L
Sbjct: 125 HTH-----PLNLLTLMNLE----EFQELLPKMMKIHPEVLIFFPQGISVVEFEKPGSVEL 175
Query: 77 S-TTAEALK 84
T E +
Sbjct: 176 GLKTVEKSE 184
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Length = 361
Score = 27.2 bits (61), Expect = 7.7
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 206 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHV 265
R +A+ +A F + + + +V L+ +++ + ++
Sbjct: 103 QRAEALRDAGADFFCVDVAHAH-------AKYVGKTLKSLRQLLGSRCIMAGNVATYAGA 155
Query: 266 QQVAGWGADGVIVG 279
+A GAD + G
Sbjct: 156 DYLASCGADIIKAG 169
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.1.2.1
Length = 252
Score = 27.1 bits (61), Expect = 8.0
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 252 PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK---LLGEA 289
P+ VG G+ E +++ GAD V V SA V+ L+ E
Sbjct: 77 PLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIREL 117
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis,
lyase, phosphate-binding sites; 1.45A {Thermotoga
maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A
1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Length = 253
Score = 26.7 bits (60), Expect = 8.4
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 252 PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK---LLGEA 289
P VG GI E ++ GAD V + +A V+ L+ +
Sbjct: 76 PFTVGGGIHDFETASELILRGADKVSINTAAVENPSLITQI 116
>3ijd_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein structure initiative; HET: C2F; 2.00A
{Clostridium thermocellum atcc 27405}
Length = 315
Score = 26.9 bits (59), Expect = 9.0
Identities = 9/77 (11%), Positives = 18/77 (23%)
Query: 46 PTVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLA 105
T+ K K+ I Y G + + + + +G +
Sbjct: 73 ETIDPQIYSENYLKDLKIPKIIYRCVGKYTPDEFRRLTRPVSGQDAFSVFVGAASRNQSV 132
Query: 106 DGPVIQAAATRSLARGT 122
+ A R
Sbjct: 133 LLKLSDAYKIRQDVNPD 149
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum
aerophilum} SCOP: c.1.2.1
Length = 253
Score = 26.7 bits (60), Expect = 9.2
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 252 PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK---LLGEA 289
PV VG G+ E + GAD V V +A V+ L+
Sbjct: 79 PVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRNPQLVALL 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.373
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,719,615
Number of extensions: 296659
Number of successful extensions: 934
Number of sequences better than 10.0: 1
Number of HSP's gapped: 906
Number of HSP's successfully gapped: 109
Length of query: 311
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 218
Effective length of database: 4,105,140
Effective search space: 894920520
Effective search space used: 894920520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.2 bits)