RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021527
(311 letters)
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
[TaxId: 4577]}
Length = 261
Score = 239 bits (611), Expect = 3e-79
Identities = 152/261 (58%), Positives = 200/261 (76%), Gaps = 4/261 (1%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
+++T L +GK A IPYITAGDPDL+TTAEAL+LLD CG+D+IELGVP SDP DGP+
Sbjct: 4 VSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPI 63
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR 169
IQA+ R+LA GT +A+L ML+EV P++SCP+ L +YY PI+ R + + G+
Sbjct: 64 IQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMK----EAGVH 119
Query: 170 GLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTG 229
GL+VPD+P SL EA N +ELVL TTP P DRMK I +ASEGFVYLVS GVTG
Sbjct: 120 GLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTG 179
Query: 230 ARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA 289
RA+++ V++L++E+K+ + KPVAVGFGISKPEHV+Q+A WGADGVI+GSAMV+ LGEA
Sbjct: 180 PRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEA 239
Query: 290 QSPEEGLKELEKFAKSLKSAL 310
SP++GL+ LE++A+ +K+AL
Sbjct: 240 ASPKQGLRRLEEYARGMKNAL 260
>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus
thermophilus [TaxId: 274]}
Length = 271
Score = 231 bits (589), Expect = 1e-75
Identities = 97/258 (37%), Positives = 149/258 (57%), Gaps = 3/258 (1%)
Query: 52 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQ 111
E F + + +G+ ALIPY+TAG P +A++ + +D++E+G+PYSDPL DGPVIQ
Sbjct: 5 EAFAKARSEGRAALIPYLTAGFPSREGFLQAVEEVLP-YADLLEIGLPYSDPLGDGPVIQ 63
Query: 112 AAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGL 171
A+ +L +G + L +++EV P+ L TY NP+L G + F + G G+
Sbjct: 64 RASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGV 123
Query: 172 VVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGAR 231
++PD+P +E L + A + +E V PT+ R+ +V + GFVY VS GVTG R
Sbjct: 124 ILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMR 183
Query: 232 ASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQS 291
+ V+ L+R IK + PVAVGFG+S Q ADGV+VGSA+V+ L E +S
Sbjct: 184 ERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRALEEGRS 241
Query: 292 PEEGLKELEKFAKSLKSA 309
L+E+ + + L++
Sbjct: 242 LAPLLQEIRQGLQRLEAN 259
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 248
Score = 214 bits (545), Expect = 2e-69
Identities = 106/248 (42%), Positives = 144/248 (58%), Gaps = 5/248 (2%)
Query: 59 KQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL 118
K G +LIPY+TAGDPD +T L LD + IELG+P+SDP+ADG IQ + R+L
Sbjct: 3 KDG--SLIPYLTAGDPDKQSTLNFLLALDE-YAGAIELGIPFSDPIADGKTIQESHYRAL 59
Query: 119 ARGTNFNAILSMLKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL 178
G ++KE S PI L TYYNPI + GV NF++ + G+ G++V D+P+
Sbjct: 60 KNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPV 119
Query: 179 EETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHV 238
+ + A + I+ V P TP +R+K I + + GFVYLVS G TGAR I
Sbjct: 120 FHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTA 179
Query: 239 QTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKE 298
LLR K VAVGFG+SK EHV + GA+GV+VGSA+VK++GE E +
Sbjct: 180 YDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGE--KGREATEF 237
Query: 299 LEKFAKSL 306
L+K + L
Sbjct: 238 LKKKVEEL 245
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 267
Score = 202 bits (514), Expect = 1e-64
Identities = 89/262 (33%), Positives = 140/262 (53%), Gaps = 2/262 (0%)
Query: 50 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPV 109
F +L + + A +P++T GDP + + + + L G+D +ELGVP+SDPLADGP
Sbjct: 4 YENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPT 63
Query: 110 IQAAATRSLARGTNFNAILSMLKEVVPQM-SCPIALFTYYNPILKRGVDNFMSTVRDIGI 168
IQ A R+ A G ML + + + PI L Y N + G+D F + +G+
Sbjct: 64 IQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGV 123
Query: 169 RGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVT 228
++V DVP+EE+ ++ A+++ I + P D ++ + G+ YL+S GVT
Sbjct: 124 DSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVT 183
Query: 229 GARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 288
GA + + L+ ++KE P GFGIS PE V GA G I GSA+VK++ +
Sbjct: 184 GAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEK 243
Query: 289 A-QSPEEGLKELEKFAKSLKSA 309
SP++ L EL F ++K+A
Sbjct: 244 NLASPKQMLAELRSFVSAMKAA 265
>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl
phosphate synthase {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 231
Score = 168 bits (427), Expect = 7e-52
Identities = 27/226 (11%), Positives = 63/226 (27%), Gaps = 14/226 (6%)
Query: 69 ITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIL 128
IT DPD + T E +K + G+D + + + + ++
Sbjct: 9 ITKLDPDRTNTDEIIKAVADSGTDAVMIS--GTQNVTYEKART---LIEKVSQYGLPIVV 63
Query: 129 SMLKEVV----PQMSCPIALFTYYNPILKRGVDNFMST-VRDIGIRGLVVPDVPLEETES 183
+ + G + + + + + E
Sbjct: 64 EPSDPSNVVYDVDYLFVPTVLNSADGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEG 123
Query: 184 LQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLR 243
+ + V T + + L + + + G+ + +
Sbjct: 124 YIVLNPDSAVARV---TKALCNIDKELAASYALVGEKLFNLPIIYIEYSGTYGNPELVAE 180
Query: 244 EIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA 289
K + G GI E +++ AD +IVG+ + + +A
Sbjct: 181 VKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIYEKGIDA 225
>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis
[TaxId: 1423]}
Length = 229
Score = 138 bits (349), Expect = 2e-40
Identities = 34/237 (14%), Positives = 71/237 (29%), Gaps = 36/237 (15%)
Query: 73 DPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132
DP+ E L++L G+D + +G SD + + V++ +
Sbjct: 15 DPNKDLPDEQLEILCESGTDAVIIG--GSDGVTEDNVLRMMSKVR--------------- 57
Query: 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIR------------GLVVPDVPLEE 180
+ P L + G D + + +EE
Sbjct: 58 ----RFLVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEE 113
Query: 181 TESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQT 240
+ + T + + A + + + + + G ++
Sbjct: 114 IVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEYSG--VLGDIEA 171
Query: 241 LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLK 297
+ + T + G GI E +Q A AD ++VG+A+ + A +K
Sbjct: 172 VKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYEDFDRALKTVAAVK 227
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 69.1 bits (168), Expect = 2e-14
Identities = 22/202 (10%), Positives = 58/202 (28%), Gaps = 10/202 (4%)
Query: 93 IIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILS--MLKEVVPQMSCPI-ALFTYYN 149
I+ +PL ++ A + G + + + + P+ +
Sbjct: 8 IVSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDY 67
Query: 150 PILKRGVDNFMSTVRDIGIRG--LVVPDVPL-----EETESLQKEAMKNKIELVLFTTPT 202
+ V ++ ++ D L E + L + + +
Sbjct: 68 DHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIA 127
Query: 203 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKP 262
T + A + + + + L+++ +S V + P
Sbjct: 128 TVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITP 187
Query: 263 EHVQQVAGWGADGVIVGSAMVK 284
+ ++V G +VG A+ +
Sbjct: 188 DMYKRVMDLGVHCSVVGGAITR 209
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 54.4 bits (130), Expect = 2e-09
Identities = 29/230 (12%), Positives = 58/230 (25%), Gaps = 34/230 (14%)
Query: 75 DLSTTAEALKLLDSCGS--DIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK 132
D T A + DIIE+G + +G + LK
Sbjct: 9 DNQTMDSAYETTRLIAEEVDIIEVGTILC--VGEGV-----------------RAVRDLK 49
Query: 133 EVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVV-PDVPLEETESLQKEAMKN 191
+ P + + V + + A +
Sbjct: 50 ALYPHKIVLADAKIADAG------KILSRMCFEANADWVTVICCADINTAKGALDVAKEF 103
Query: 192 KIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTK 251
++ + T ++ + +A G V A ++ + + S
Sbjct: 104 NGDVQIELTGYWTWEQAQQWRDAGIGQVVYHR--SRDAQAAGVAWGEADITAIKRLSDMG 161
Query: 252 PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301
G E + G I G ++ A SP E ++ ++
Sbjct: 162 FKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRD----AASPVEAARQFKR 207
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 48.7 bits (115), Expect = 2e-07
Identities = 35/229 (15%), Positives = 68/229 (29%), Gaps = 17/229 (7%)
Query: 80 AEALKLLDSCGSDIIELGVPYSDPLA--DGPVIQAAATRSLARGTNFNAI--LSMLKEVV 135
E LK G I+ +PL G ++ A + G + +KE+
Sbjct: 8 MEQLK-----GGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQ 62
Query: 136 PQMSCPI----ALFTYYNPILKRGVDNFMSTVRDIG--IRGLVVPDVPLEETESLQKEAM 189
PI + + + + + + +
Sbjct: 63 AITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIR 122
Query: 190 KNKIELVLFTTPTTPTDRMKAIVEASEGFVYL-VSSIGVTGARASISGHVQTLLREIKES 248
+ K + + + +V G ++ + G T +G L E
Sbjct: 123 QVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPD-VALIEALCK 181
Query: 249 STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLK 297
+ V I PE +++ G G++VG A+ + A+ E LK
Sbjct: 182 AGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITRPKEIAERFIEALK 230
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus
woesei [TaxId: 2262]}
Length = 224
Score = 45.8 bits (107), Expect = 2e-06
Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 5/124 (4%)
Query: 177 PLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGA-RASIS 235
L + E+ + A + + ++ + + + A+ +A
Sbjct: 101 ILADLEAAIRRAEEVGLMTMVCSNNPAVSAAVAALNPDYVAVEPPELIGTGIPVSKAKPE 160
Query: 236 GHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEG 295
T+ K + V G GIS E V++ G GV++ S + K A+ PE+
Sbjct: 161 VITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTK----AKDPEKA 216
Query: 296 LKEL 299
+ +L
Sbjct: 217 IWDL 220
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax
[TaxId: 2271]}
Length = 226
Score = 44.5 bits (104), Expect = 5e-06
Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 8/133 (6%)
Query: 178 LEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVS-SIGVTGARASISG 236
L + L +A +++V+ + A+ + G +R
Sbjct: 100 LNDLARLVAKAKSLGLDVVVCAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEA 159
Query: 237 HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL 296
V+T+ + V G GI + V G GV++ SA VK A+ P
Sbjct: 160 IVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVK----AKDPY--- 212
Query: 297 KELEKFAKSLKSA 309
++ + AK L
Sbjct: 213 AKIVELAKPLSEL 225
>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 253
Score = 43.6 bits (102), Expect = 1e-05
Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 23/225 (10%)
Query: 92 DIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKE--VVPQMSCPIALFTYYN 149
D +ELG YS+ D V R T + + ++ + + I F +
Sbjct: 31 DPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETAS 90
Query: 150 PILKRGVDNFM---STVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTD 206
++ RG D + V + + + + + +A + E ++FT
Sbjct: 91 ELILRGADKVSINTAAVENPSLITQIAQTFG-SQAVVVAIDAKRVDGEFMVFTYSGKKNT 149
Query: 207 RMKAIVEASEGFVYLVSSIGVTGARASI------SGHVQTLLREIKESSTKPVAVGFGIS 260
+ E I +T SI SG+ ++R ++ +T P+ G
Sbjct: 150 GILLRDWVVEVEKRGAGEILLT----SIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAG 205
Query: 261 KPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKS 305
K EH + GAD + S E ++EL+++ K
Sbjct: 206 KMEHFLEAFLAGADAALAASVFH-------FREIDVRELKEYLKK 243
>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 252
Score = 43.1 bits (101), Expect = 2e-05
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 11/107 (10%)
Query: 199 TTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFG 258
T K + E G + L++SI G G+ L+R + +S PV G
Sbjct: 150 ATGLDAVKWAKEVEELGAGEI-LLTSIDRDGTG---LGYDVELIRRVADSVRIPVIASGG 205
Query: 259 ISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKS 305
+ EH + A GAD V+ S + +++++ K
Sbjct: 206 AGRVEHFYEAAAAGADAVLAASLFH-------FRVLSIAQVKRYLKE 245
>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 251
Score = 39.0 bits (90), Expect = 3e-04
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 220 YLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVG 279
L++S+ G + G+ L R + E+ PV G + EH + GA+ +
Sbjct: 168 ILLTSMDRDGTK---EGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAA 224
Query: 280 SAMVKLLGEAQSPEEGLKELEKFAKS 305
S E + +L+++
Sbjct: 225 SVFH-------FGEIPIPKLKRYLAE 243
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 230
Score = 36.9 bits (85), Expect = 0.002
Identities = 39/238 (16%), Positives = 82/238 (34%), Gaps = 36/238 (15%)
Query: 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSM---- 130
+ S E +K ++ G D I + V DG F +++
Sbjct: 21 NFSKLGEQVKAIEQAGCDWIHVDV------MDG---------------RFVPNITIGPLV 59
Query: 131 LKEVVPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMK 190
+ + P P+ + +R D + + + + L T + K
Sbjct: 60 VDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSL-G 118
Query: 191 NKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQT---LLREIKE 247
K +VL P TP ++ +++A + + + + G G S + +
Sbjct: 119 AKAGVVL--NPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAER 176
Query: 248 SSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKS 305
+ V G+ P++ +V GA+ ++ GSA+ A E +K ++ +
Sbjct: 177 GLNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG----APDYAEAIKGIKTSKRP 229
>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Streptomyces
coelicolor [TaxId: 1902]}
Length = 239
Score = 36.4 bits (83), Expect = 0.002
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 235 SGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGW---GADGVIVGSA 281
G LL+ + ++ +PV G+S + ++ +AG G +G IVG A
Sbjct: 174 QGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 223
>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 35.1 bits (80), Expect = 0.006
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 225 IGVTG-ARASISGHVQTLLREIKESSTKPVAVG-FGISKPEHVQQVAGWGADGVIVGSAM 282
IG+ + L + V V GI P ++ + G + V+VG+++
Sbjct: 175 IGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLRG-KVNAVLVGTSI 233
Query: 283 VKLLGEAQSPEEGLKEL 299
+K A++P L+E+
Sbjct: 234 MK----AENPRRFLEEM 246
>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS
{Escherichia coli [TaxId: 562]}
Length = 254
Score = 34.7 bits (79), Expect = 0.009
Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 258 GISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 299
GI+ V++++ A+G ++GSA++ ++ +
Sbjct: 216 GINTYAQVRELSH-FANGFLIGSALMA----HDDLHAAVRRV 252
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase
{Streptococcus pyogenes [TaxId: 1314]}
Length = 217
Score = 34.3 bits (78), Expect = 0.010
Identities = 26/227 (11%), Positives = 69/227 (30%), Gaps = 28/227 (12%)
Query: 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134
D + A L ++ ++ + + + DG F +S +V
Sbjct: 12 DYANFASELARIEETDAEYVHIDI------MDG---------------QFVPNISFGADV 50
Query: 135 VPQMSCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIE 194
V M + + ++ + ++ G + + ++ ++
Sbjct: 51 VASM-RKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMK 109
Query: 195 LVLFTTPTTPTDRMKAIVEASEGFVYLVSSIG--VTGARASISGHVQTLLREIKESSTKP 252
+ P TP ++ +++ + + + + G V T+ + E
Sbjct: 110 AGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSF 169
Query: 253 VAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 299
G + ++ GA+ + GS + K A ++ L
Sbjct: 170 DIEVDGGVDNKTIRACYEAGANVFVAGSYLFK----ASDLVSQVQTL 212
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon
(Pyrococcus furiosus) [TaxId: 2261]}
Length = 206
Score = 34.1 bits (77), Expect = 0.014
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 242 LREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301
LR+I ES PV V G ++ ++V G DG+ V SA++ A+ + +EL K
Sbjct: 145 LRKIVESVKIPV-VAIGGINKDNAREVLKTGVDGIAVISAVMG----AEDVRKATEELRK 199
Query: 302 FAK 304
+
Sbjct: 200 IVE 202
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 221
Score = 33.9 bits (77), Expect = 0.016
Identities = 44/238 (18%), Positives = 81/238 (34%), Gaps = 38/238 (15%)
Query: 75 DLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV 134
D S E +K +D G+D I + V DG F +++ +
Sbjct: 13 DFSRLGEEIKAVDEAGADWIHVDV------MDG---------------RFVPNITIGPLI 51
Query: 135 VPQM----SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMK 190
V + + + K D + I + L T +E K
Sbjct: 52 VDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGK 111
Query: 191 NKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESST 250
K VL P+TP D ++ ++ + L+ S+ S V +R +++
Sbjct: 112 -KAGAVL--NPSTPLDFLEYVLP--VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCD 166
Query: 251 KPVAVGF----GISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAK 304
+ + G KP + QV GA+ ++ GSA+ A + E + + +
Sbjct: 167 ERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFN----APNYAEAIAGVRNSKR 220
>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 33.9 bits (77), Expect = 0.016
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 258 GISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 299
G S+ E ++ + G D V++G+++++ A E L+EL
Sbjct: 216 GYSRKEELKALEG-LFDAVLIGTSLMR----APDLEAALREL 252
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
{Thermus thermophilus [TaxId: 274]}
Length = 310
Score = 34.1 bits (77), Expect = 0.018
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 10/115 (8%)
Query: 196 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV 255
+ T R++ V E + IG+ ARA +L + P+
Sbjct: 188 DVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARA--------ILEVREVLPHLPLVA 239
Query: 256 GFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 310
G+ + GAD + V +++ + E + + + L++AL
Sbjct: 240 SGGVYTGTDGAKALALGADLLAVARPLLRPA--LEGAERVAAWIGDYLEELRTAL 292
>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 247
Score = 33.1 bits (75), Expect = 0.026
Identities = 6/27 (22%), Positives = 18/27 (66%)
Query: 258 GISKPEHVQQVAGWGADGVIVGSAMVK 284
GIS+ ++++ G + ++GS++++
Sbjct: 211 GISERNEIEELRKLGVNAFLIGSSLMR 237
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus
subtilis [TaxId: 1423]}
Length = 251
Score = 33.3 bits (76), Expect = 0.027
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 221 LVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGS 280
S IG +G ++ ++ + K PV V GI P+ GADGV++ +
Sbjct: 153 GASPIG-SGQGILNPLNLSFIIEQAK----VPVIVDAGIGSPKDAAYAMELGADGVLLNT 207
Query: 281 AMVKLLGEAQSPEEGLKELEKFAKSLKSA 309
A+ A P K A+++K A
Sbjct: 208 AVSG----ADDP-------VKMARAMKLA 225
>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 323
Score = 33.2 bits (75), Expect = 0.036
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 243 REIKESSTKPVAVGFGISKPEHVQQV-AGWGADGVIVGSA 281
+K++ PV G PEH ++ AD +
Sbjct: 257 EHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGM 296
>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Thermotoga maritima
[TaxId: 2336]}
Length = 241
Score = 32.3 bits (72), Expect = 0.052
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 19/70 (27%)
Query: 244 EIKESSTKPVAVGFGISKPEHVQQV------AGWGADGVIVGSAMVKLLGEAQSPEEG-- 295
+I + V GIS ++ GVIVG A EG
Sbjct: 182 KIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAF----------LEGIL 231
Query: 296 -LKELEKFAK 304
++ ++++A+
Sbjct: 232 TVEVMKRYAR 241
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 243
Score = 31.4 bits (71), Expect = 0.11
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
Query: 252 PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 309
PV V G+ G + V++ +A+ A+ P A+++K A
Sbjct: 181 PVLVDAGVGTASDAAIAMELGCEAVLMNTAIAH----AKDP-------VMMAEAMKHA 227
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice
(Oryza sativa) [TaxId: 4530]}
Length = 220
Score = 31.0 bits (69), Expect = 0.12
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 261 KPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKS 305
P + A GA+ ++ GS++ A P E + L K +
Sbjct: 178 GPSTIDVAASAGANCIVAGSSIFG----AAEPGEVISALRKSVEG 218
>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 254
Score = 30.5 bits (69), Expect = 0.20
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 230 ARASISGHVQTLLREIKES--STKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG 287
A A G +LREIK G++ P + GADGV VGS + K
Sbjct: 167 AEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFK--- 223
Query: 288 EAQSPEE 294
+++PE+
Sbjct: 224 -SENPEK 229
>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga
maritima [TaxId: 2336]}
Length = 389
Score = 30.9 bits (68), Expect = 0.21
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 6/76 (7%)
Query: 39 MAALTASPTVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGV 98
+ SP L KK+G + + G PDL T + + + V
Sbjct: 5 VLLTEESPIRKLVPFAEMAKKRGV-RIHH-LNIGQPDLKTPEVFFERI----YENKPEVV 58
Query: 99 PYSDPLADGPVIQAAA 114
YS + +A A
Sbjct: 59 YYSHSAGIWELREAFA 74
>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga
maritima [TaxId: 2336]}
Length = 375
Score = 29.2 bits (64), Expect = 0.60
Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 7/113 (6%)
Query: 39 MAALTASPTVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGV 98
++ + S T+ L L K+G+ +I +TAG+PD T ++ ++ G
Sbjct: 5 ISEIPISKTMELDAKAKALIKKGE-DVIN-LTAGEPDFPTPEPVVEEA----VRFLQKGE 58
Query: 99 P-YSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNP 150
Y+DP + + A R R + ++ + + A +P
Sbjct: 59 VKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDP 111
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 221
Score = 29.0 bits (64), Expect = 0.61
Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 262 PEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 299
E + A GA+ ++ G+++ A+ P+ + +
Sbjct: 181 IETTEISASHGANIIVAGTSIFN----AEDPKYVIDTM 214
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 28.6 bits (63), Expect = 0.96
Identities = 36/205 (17%), Positives = 68/205 (33%), Gaps = 30/205 (14%)
Query: 39 MAALTASPTVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGV 98
+ A+ S TV + L++QG L+ +TAG+PD T + + G
Sbjct: 8 VQAMKPSATVAVNAKALELRRQGV-DLVA-LTAGEPDFDTPEHVKEAA----RRALAQGK 61
Query: 99 P-YSDPLADGPVIQAAATRSLAR------------GTNFNAILSMLKEVVPQMSCPIALF 145
Y+ P + +A A + + L L + + + +
Sbjct: 62 TKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVL 121
Query: 146 TYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPT 205
+ Y V V ++ E A+ + + ++ +P PT
Sbjct: 122 SPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVR----RAITPRTKALVVNSPNNPT 177
Query: 206 ------DRMKAIVE-ASEGFVYLVS 223
+ ++A+ A E YLVS
Sbjct: 178 GAVYPKEVLEALARLAVEHDFYLVS 202
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 28.4 bits (62), Expect = 0.99
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 253 VAVGFGISKPEHVQQVAGWGADGVIVGSAMV 283
+A G GI E Q GA + V SA+
Sbjct: 259 LATG-GIDSAESGLQFLHSGASVLQVCSAVQ 288
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium
lapideum [TaxId: 32060]}
Length = 388
Score = 28.6 bits (63), Expect = 1.1
Identities = 29/177 (16%), Positives = 67/177 (37%), Gaps = 17/177 (9%)
Query: 39 MAALTASPTVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGV 98
+ +++ S T+ + +K +G + + +AG+PD +T ++ +E G
Sbjct: 7 VESVSPSMTLIIDAKAKAMKAEGI-DVCSF-SAGEPDFNTPKHIVEAA----KAALEQGK 60
Query: 99 P-YSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQMSCPIALFTYYNP-----IL 152
Y + + +A A + ++L + S + P I
Sbjct: 61 TRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIP 120
Query: 153 KRGVDNFMSTVRDIGIRGLVVPDVP----LEETESLQKEAMKNKIELVLFTTPTTPT 205
++ V+ +++P E + ++A+ K +L++F TP+ PT
Sbjct: 121 APFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQI-RQAITPKTKLLVFNTPSNPT 176
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae
[TaxId: 108330]}
Length = 299
Score = 27.5 bits (60), Expect = 1.9
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 253 VAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLK 307
V + G + V + G + V + L ++ L + AK
Sbjct: 247 VPIFGGALSVDMVPSLIEQGYRAIAVQFDVWGL---SRLVHGSLAQARASAKQFA 298
>d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP
{Escherichia coli [TaxId: 562]}
Length = 369
Score = 27.8 bits (60), Expect = 2.0
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 267 QVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 301
+ A V +A++ Q+ +E LK+ +
Sbjct: 332 NIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQT 366
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal
domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 340
Score = 27.3 bits (59), Expect = 2.4
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 236 GHVQTLLREIKESSTKPVAVGFGISKPEHVQQV--AGWGADGVIVGSAMV 283
GH ++ +K+ S KPV + PE + ++ G+ AD + +
Sbjct: 277 GHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGY-ADIIGCARPSI 325
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 26.9 bits (58), Expect = 3.3
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 258 GISKPEHVQQVAGWGADGVIVGSAMVK---LLGE------AQSPEEGLKELEKFAKSLKS 308
G++ + V ++ GA V VG+A + + + ++ LE + +K
Sbjct: 249 GVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQYRIESLESLIQEVKE 308
Query: 309 A 309
Sbjct: 309 G 309
>d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 72
Score = 24.7 bits (54), Expect = 4.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 295 GLKELEKFAKSLK 307
G++ LE+FA K
Sbjct: 1 GMRALEQFANEFK 13
>d2pgca1 d.58.4.23 (A:1-206) Uncharacterized protein GOS_2596953
{environmental samples}
Length = 206
Score = 26.1 bits (57), Expect = 4.3
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 69 ITAGDPDLSTTAEALKLLDSCGSDIIE 95
+T D S +L+ S D+I+
Sbjct: 9 LTVASVDFSYRETMARLMSSYSKDLID 35
>d2nlza1 d.153.1.6 (A:3-539) Cephalosporin acylase {Bacillus
halodurans [TaxId: 86665]}
Length = 537
Score = 26.8 bits (58), Expect = 4.5
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 221 LVSSIGVTGARASISGHVQTLLREI 245
+ GV G GH+Q ++ I
Sbjct: 430 PIGPFGVMGGFMQPQGHMQVMMNTI 454
>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermotoga maritima [TaxId:
2336]}
Length = 218
Score = 25.8 bits (56), Expect = 6.9
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 1/104 (0%)
Query: 208 MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAV-GFGISKPEHVQ 266
+AI+ A G Y+ +G ++ + + EI + + I P HV
Sbjct: 115 AQAILAAKAGATYVSPFVGRMDDLSNDGMRMLGEIVEIYNNYGFETEIIAASIRHPMHVV 174
Query: 267 QVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 310
+ A G D V + A+++ L + + G++ + K L
Sbjct: 175 EAALMGVDIVTMPFAVLEKLFKHPMTDLGIERFMEDWKKYLENL 218
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.373
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,102,984
Number of extensions: 51012
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 45
Length of query: 311
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,240,546
Effective search space: 280363396
Effective search space used: 280363396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)