BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021528
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EMN|X Chain X, The Crystal Structure Of Mouse Vdac1 At 2.3 A Resolution
Length = 295
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Query: 140 TNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSG 199
T++ ++ YK +++ +G FG S Q V+ L + W + +
Sbjct: 171 TSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTR 230
Query: 200 IGYAARYEND-KMVATGQVASTGMVALSYVQKLSEKVSL 237
G AA+Y+ D + +V ++ ++ L Y Q L + L
Sbjct: 231 FGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKL 269
>pdb|2K4T|A Chain A, Solution Structure Of Human Vdac-1 In Ldao Micelles
Length = 291
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 154 YKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYEND-KMV 212
YK +++ +G FG S Q V+ L + W + + G AA+Y+ D
Sbjct: 173 YKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDAC 232
Query: 213 ATGQVASTGMVALSYVQKLSEKVSL 237
+ +V ++ ++ L Y Q L + L
Sbjct: 233 FSAKVNNSSLIGLGYTQTLKPGIKL 257
>pdb|2JK4|A Chain A, Structure Of The Human Voltage-Dependent Anion Channel
Length = 294
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 154 YKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYEND-KMV 212
YK +++ +G FG S Q V+ L + W + + G AA+Y+ D
Sbjct: 176 YKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDAC 235
Query: 213 ATGQVASTGMVALSYVQKLSEKVSL 237
+ +V ++ ++ L Y Q L + L
Sbjct: 236 FSAKVNNSSLIGLGYTQTLKPGIKL 260
>pdb|2VJI|A Chain A, Tailspike Protein Of E.Coli Bacteriophage Hk620
pdb|2VJJ|A Chain A, Tailspike Protein Of E.Coli Bacteriophage Hk620 In Complex
With Hexasaccharide
pdb|2X85|A Chain A, Tailspike Protein Of E. Coli Bacteriophage Hk620 In
Complex With Hexasaccharide
Length = 600
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 129 DNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGE 188
DN ++ L N HG++ D+ G ++ Q NG FG SY +V+ G+
Sbjct: 139 DNGDPASSGNLENCHIYGHGVV--DFGGYEFGASSQLRNGVAFGRSYNCSVTGITFQNGD 196
Query: 189 VFWA 192
V WA
Sbjct: 197 VTWA 200
>pdb|2X6Y|A Chain A, Tailspike Protein Mutant D339a Of E.Coli Bacteriophage
Hk620 In Complex With Hexasaccharide
Length = 600
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 129 DNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGE 188
DN ++ L N HG++ D+ G ++ Q NG FG SY +V+ G+
Sbjct: 139 DNGDPASSGNLENCHIYGHGVV--DFGGYEFGASSQLRNGVAFGRSYNCSVTGITFQNGD 196
Query: 189 VFWA 192
V WA
Sbjct: 197 VTWA 200
>pdb|2X6X|A Chain A, Tailspike Protein Mutant D339n Of E.Coli Bacteriophage
Hk620 In Complex With Hexasaccharide
Length = 600
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 129 DNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGE 188
DN ++ L N HG++ D+ G ++ Q NG FG SY +V+ G+
Sbjct: 139 DNGDPASSGNLENCHIYGHGVV--DFGGYEFGASSQLRNGVAFGRSYNCSVTGITFQNGD 196
Query: 189 VFWA 192
V WA
Sbjct: 197 VTWA 200
>pdb|2X6W|A Chain A, Tailspike Protein Mutant E372q Of E.Coli Bacteriophage
Hk620 In Complex With Hexasaccharide
pdb|4AVZ|A Chain A, Tailspike Protein Mutant E372q Of E. Coli Bacteriophage
Hk620
Length = 600
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 129 DNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGE 188
DN ++ L N HG++ D+ G ++ Q NG FG SY +V+ G+
Sbjct: 139 DNGDPASSGNLENCHIYGHGVV--DFGGYEFGASSQLRNGVAFGRSYNCSVTGITFQNGD 196
Query: 189 VFWA 192
V WA
Sbjct: 197 VTWA 200
>pdb|2GWD|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With Mg2+ And L-glutamate
Length = 449
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 240 DLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSA 293
D+M NYM + S+G D +LR C ++ +D + A + R + L I +A
Sbjct: 157 DIMRNYMPK--VGSLGLDMMLRTCTVQVNLDFSSEADMIRKFRAGLALQPIATA 208
>pdb|3TTO|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In Triclinic
Form
pdb|3TTO|B Chain B, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In Triclinic
Form
pdb|3TTO|C Chain C, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In Triclinic
Form
pdb|3TTO|D Chain D, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In Triclinic
Form
pdb|3TTQ|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Orthorhombic Apo-Form At 1.9 Angstrom Resolution
Length = 1108
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 16/91 (17%)
Query: 43 EALMSLKPELFEGLRFDF------TKGLNQKFSLSHSVIMGPTE-IPSQSTETIKIPTAH 95
EAL + P+LFEG +D+ G N ++LSH G E IP+ IK +A
Sbjct: 988 EALKAKYPDLFEGKAYDYWYKNYANDGSNPYYTLSH----GDRESIPADV--AIKQWSAK 1041
Query: 96 YEFGANYIDPKLMLIGRVLTDGRLNARVKCD 126
Y G N + + G VL D K D
Sbjct: 1042 YMNGTNVLGNGM---GYVLKDWHNGQYFKLD 1069
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,362,152
Number of Sequences: 62578
Number of extensions: 382790
Number of successful extensions: 780
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 9
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)