Query 021528
Match_columns 311
No_of_seqs 163 out of 701
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:42:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07305 Porin3_Tom40 Transloca 100.0 1.9E-64 4.1E-69 464.3 39.0 269 31-311 1-279 (279)
2 cd07303 Porin3 Eukaryotic pori 100.0 5.1E-53 1.1E-57 387.0 35.2 263 36-311 1-274 (274)
3 PF01459 Porin_3: Eukaryotic p 100.0 6.8E-50 1.5E-54 365.6 33.0 261 33-305 1-273 (273)
4 KOG3296 Translocase of outer m 100.0 8.7E-51 1.9E-55 367.8 12.7 273 23-311 19-308 (308)
5 TIGR00989 3a0801s07tom40 mitoc 100.0 2.3E-41 5.1E-46 279.9 19.9 149 31-192 1-161 (161)
6 cd07306 Porin3_VDAC Voltage-de 100.0 3.8E-38 8.2E-43 289.4 37.6 265 34-310 1-275 (276)
7 KOG3126 Porin/voltage-dependen 100.0 1.7E-33 3.8E-38 253.7 29.6 267 31-310 1-279 (281)
8 cd07305 Porin3_Tom40 Transloca 99.8 4.4E-17 9.5E-22 150.0 29.0 193 53-257 77-277 (279)
9 cd07306 Porin3_VDAC Voltage-de 99.6 1.9E-12 4E-17 119.1 29.1 164 95-259 106-274 (276)
10 cd07303 Porin3 Eukaryotic pori 99.5 4.9E-11 1.1E-15 109.6 28.4 161 96-256 108-271 (274)
11 PF01459 Porin_3: Eukaryotic p 99.5 8.7E-11 1.9E-15 107.2 29.3 155 94-248 105-268 (273)
12 KOG3126 Porin/voltage-dependen 99.2 3.5E-09 7.6E-14 96.3 21.6 118 143-260 161-279 (281)
13 TIGR00989 3a0801s07tom40 mitoc 98.8 6.1E-07 1.3E-11 75.0 17.4 99 145-244 55-161 (161)
14 KOG3296 Translocase of outer m 98.6 4.3E-08 9.2E-13 89.9 4.5 241 18-310 6-255 (308)
15 PF12519 DUF3722: Protein of u 97.5 0.0016 3.6E-08 58.8 11.7 137 108-244 86-260 (260)
16 PF03349 Toluene_X: Outer memb 96.6 0.75 1.6E-05 44.5 22.1 103 159-261 260-380 (427)
17 COG2067 FadL Long-chain fatty 95.9 0.49 1.1E-05 46.4 16.4 105 161-267 278-399 (440)
18 PRK10716 long-chain fatty acid 95.8 2.1 4.6E-05 42.0 21.1 100 161-262 279-393 (435)
19 PRK10716 long-chain fatty acid 89.8 21 0.00046 35.0 17.6 20 198-217 339-359 (435)
20 COG2067 FadL Long-chain fatty 88.9 16 0.00034 36.0 14.5 33 213-245 278-310 (440)
21 PF03349 Toluene_X: Outer memb 87.8 27 0.00058 33.6 25.0 84 213-296 262-350 (427)
22 PRK10993 outer membrane protea 86.8 25 0.00054 33.0 13.8 176 110-296 62-271 (314)
23 PF11383 DUF3187: Protein of u 86.0 31 0.00067 32.5 18.1 97 173-269 163-296 (319)
24 PF10082 DUF2320: Uncharacteri 83.5 41 0.00089 31.9 20.2 74 222-310 298-379 (381)
25 TIGR03509 OMP_MtrB_PioB decahe 83.1 61 0.0013 33.6 19.1 88 223-310 538-647 (649)
26 PF12519 DUF3722: Protein of u 80.7 32 0.0007 31.4 11.5 62 234-297 191-259 (260)
27 PRK12580 outer membrane protea 79.2 46 0.001 31.1 12.1 176 110-296 62-268 (312)
28 PRK10993 outer membrane protea 78.7 19 0.00042 33.7 9.7 87 220-310 131-219 (314)
29 PF07642 DUF1597: Outer membra 69.9 97 0.0021 29.0 21.0 175 54-269 99-312 (344)
30 PF11854 DUF3374: Protein of u 65.7 1.7E+02 0.0038 30.3 15.1 127 171-310 475-635 (637)
31 PF02530 Porin_2: Porin subfam 63.6 83 0.0018 30.2 10.7 88 171-261 279-371 (379)
32 PF03895 YadA_anchor: YadA-lik 61.6 60 0.0013 23.6 8.4 41 219-260 38-78 (78)
33 PF13557 Phenol_MetA_deg: Puta 61.5 1.1E+02 0.0024 26.7 12.7 22 222-243 166-187 (248)
34 cd00342 gram_neg_porins Porins 61.0 1.3E+02 0.0029 27.4 19.0 40 223-262 239-285 (329)
35 PRK04423 organic solvent toler 54.4 2.3E+02 0.005 30.3 12.9 89 171-259 619-720 (798)
36 PRK12580 outer membrane protea 50.3 2.2E+02 0.0048 26.7 10.5 74 219-295 130-203 (312)
37 PF12094 DUF3570: Protein of u 48.7 2.1E+02 0.0045 28.1 10.7 108 171-292 216-325 (420)
38 PF05275 CopB: Copper resistan 47.9 2E+02 0.0043 25.4 14.2 83 221-303 55-147 (210)
39 PF04357 DUF490: Family of unk 47.6 1.5E+02 0.0032 27.9 9.5 61 221-282 314-378 (379)
40 PRK10049 pgaA outer membrane p 46.5 3.8E+02 0.0082 28.3 13.9 132 157-297 496-661 (765)
41 PRK10049 pgaA outer membrane p 45.0 2.8E+02 0.0061 29.2 11.9 25 222-246 719-745 (765)
42 PRK03761 LPS assembly outer me 44.7 3.6E+02 0.0078 28.6 12.6 86 174-259 606-716 (778)
43 COG4571 OmpT Outer membrane pr 41.2 2.9E+02 0.0064 25.5 10.5 124 112-243 68-206 (314)
44 PF04338 DUF481: Protein of un 40.5 2.2E+02 0.0049 24.0 20.7 24 222-245 130-153 (210)
45 PF10082 DUF2320: Uncharacteri 39.2 3.3E+02 0.0073 25.6 18.1 23 222-244 335-357 (381)
46 PF11751 DUF3308: Protein of u 38.7 2.9E+02 0.0064 24.8 12.4 44 235-283 211-257 (274)
47 PF04575 DUF560: Protein of un 38.5 3E+02 0.0065 24.8 16.5 74 223-296 120-216 (285)
48 PF07239 OpcA: Outer membrane 38.2 1.7E+02 0.0037 25.7 7.3 21 291-311 177-197 (244)
49 PRK14574 hmsH outer membrane p 34.5 6.1E+02 0.013 27.3 12.9 132 157-297 553-718 (822)
50 PRK09980 ompL outer membrane p 34.1 3.5E+02 0.0075 24.2 10.5 28 219-246 70-98 (230)
51 PF11924 DUF3442: Protein of u 34.0 3.7E+02 0.0081 24.6 14.8 38 179-216 104-143 (280)
52 PF11886 DUF3406: Domain of un 34.0 3.8E+02 0.0081 24.6 18.5 114 147-272 134-251 (273)
53 PRK10959 outer membrane protei 33.3 3.2E+02 0.007 23.6 17.2 27 112-138 53-79 (212)
54 PF11886 DUF3406: Domain of un 32.7 4E+02 0.0086 24.5 16.6 169 111-298 46-239 (273)
55 PF13557 Phenol_MetA_deg: Puta 32.6 3.3E+02 0.0072 23.6 15.9 20 174-193 132-151 (248)
56 PF11854 DUF3374: Protein of u 30.7 5.4E+02 0.012 26.7 10.9 98 172-269 286-398 (637)
57 TIGR00993 3a0901s04IAP86 chlor 29.6 7E+02 0.015 26.4 12.7 113 147-271 614-730 (763)
58 PF05420 BCSC_C: Cellulose syn 29.2 1.3E+02 0.0028 28.6 5.7 39 173-211 302-342 (342)
59 PRK14574 hmsH outer membrane p 27.2 8.1E+02 0.018 26.4 12.0 25 222-246 776-802 (822)
60 PF05420 BCSC_C: Cellulose syn 26.5 1.6E+02 0.0035 28.1 5.8 41 222-262 299-341 (342)
61 TIGR01414 autotrans_barl outer 26.1 5.8E+02 0.013 24.4 10.1 38 222-259 388-428 (429)
62 PF13609 Porin_4: Gram-negativ 25.0 5E+02 0.011 23.2 14.6 87 182-269 200-303 (311)
63 TIGR00993 3a0901s04IAP86 chlor 22.2 9.1E+02 0.02 25.6 10.5 41 111-151 526-569 (763)
64 PF12094 DUF3570: Protein of u 21.7 7.7E+02 0.017 24.1 10.4 69 221-298 214-284 (420)
65 PRK15319 AIDA autotransporter- 20.5 1.4E+03 0.03 27.3 12.1 41 220-260 1996-2039(2039)
66 PF09381 Porin_OmpG: Outer mem 20.1 3.3E+02 0.0072 25.1 6.2 61 250-310 225-299 (301)
67 PRK10002 outer membrane protei 20.1 7.2E+02 0.016 23.4 9.1 13 250-262 315-327 (362)
No 1
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=100.00 E-value=1.9e-64 Score=464.26 Aligned_cols=269 Identities=42% Similarity=0.769 Sum_probs=256.4
Q ss_pred CCCCCcHHHhHHHHhhccCccccceEEEEEeccCCCCeEEEEEEEeCCccCCCCCccccccCCcceEEEEEEeCCc--eE
Q 021528 31 LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPK--LM 108 (311)
Q Consensus 31 l~~Pg~f~dl~ke~~~~l~~~~f~G~kl~~~k~~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~f~~~y~~~~--~~ 108 (311)
++|||+|||||||||+++.+++|||+|+|++|.++++|+++|+++||+..+ ++.|+|+++|++++ .+
T Consensus 1 ~~nPg~~e~l~~e~k~~~~~~~~~G~r~~~~k~ls~~f~~shs~~lg~~~~-----------~~~y~f~a~y~~~~~~~~ 69 (279)
T cd07305 1 LPNPGTFEELHREVKEVFPLDFFDGFRLDVNKGLSPHFQVSHSLHLGSSSL-----------TSSYQFGATYVGDKQYPF 69 (279)
T ss_pred CcCCccHHHHHHHHHHhcCccccccEEEEEccccCcCeeEEEEEEECCCCC-----------CCCcEeeeEEecCCCcEE
Confidence 689999999999999988778889999999999999999999999998531 35899999999999 99
Q ss_pred EEEEECCCccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEEEcCC------CeeEEEEEEeecCc
Q 021528 109 LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNG------ALFGASYIQNVSPH 182 (311)
Q Consensus 109 l~~~~d~dg~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk~~n~------~~~~~s~lq~vt~~ 182 (311)
++++||++|+|+++++++|.+++++|+++++++. +...+|+++||.++||++++++.|| ++++++|+|+|||+
T Consensus 70 ~~~~id~~g~l~~~~~~~~~~~~~~k~~~~~~~~-~~~~~q~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~ 148 (279)
T cd07305 70 LQGDIDNDGNLNARIIHQLGDRLRSKLQAQLQDS-KFNMSQLELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPK 148 (279)
T ss_pred EEEEeCCCCceeEEEEeccCcceEEEEEEEecCC-CceeEEEEEEEcCCceEEEEEEeCCCcccccEEEEEEEEEEccCc
Confidence 9999999999999999999999999999999875 6789999999999999999999988 57899999999999
Q ss_pred eeeeeEEEEe--ccCCceeeEEEEEEeCCCeEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEe
Q 021528 183 LSLGGEVFWA--GQHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYIL 260 (311)
Q Consensus 183 l~lG~e~~~~--~~~~~t~~~~~~rY~~~~~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~ 260 (311)
|++|+|+.|+ +..+.+.+++++||+.++|++++++++.+.+.+||+|+++|++++|+|++|+..++++++++|++|.+
T Consensus 149 l~lG~E~~~~~~~~~~~~~~~~~~rY~~~d~~~s~~l~~~~~l~asY~~kvs~~l~lG~el~~~~~~~es~~tvg~~y~~ 228 (279)
T cd07305 149 LALGGELVYQRVPGNGISVLSYAARYTAGNWIASGQLGAQGGLHLSYYRKLSDKLQLGVELELNLRTRESTATLGYQYDF 228 (279)
T ss_pred EEEEEEEEEEEcCCCCceeEEEEEEEccCCEEEEEEEcCCCeEEEEEEEEcccceEeeeeeeecccCCceeEEEEEEEEc
Confidence 9999999999 56678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEcCCceEEeeeeecccCceEEEEEEEEecCCCCeeeeEEEEeC
Q 021528 261 RQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG 311 (311)
Q Consensus 261 ~~s~vk~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~~~~~kfG~gl~~G 311 (311)
+++++||+||++|+|++.||++|+|+++|+||+++||+++++|||+||+||
T Consensus 229 ~~~~~k~~ids~g~v~~~~e~~l~~~~~l~ls~~~d~~~~~~kfG~gl~i~ 279 (279)
T cd07305 229 RQSRFRGSIDSNGKVSAVLEKRLPLPLSLLLSGELNHVKNDYKFGFGLTIG 279 (279)
T ss_pred CCCEEEEEEcCCCEEEEEEEEecCCCeEEEEEEEEcccCCcceEEEEEEeC
Confidence 999999999999999999999999999999999999999999999999997
No 2
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=100.00 E-value=5.1e-53 Score=386.99 Aligned_cols=263 Identities=16% Similarity=0.204 Sum_probs=235.3
Q ss_pred cHHHhHHHHhhccCccccceEEEEEeccCCCCeEEEEEEEeCCccCCCCCccccccCCcceEEEEEEeCC------ceEE
Q 021528 36 PYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDP------KLML 109 (311)
Q Consensus 36 ~f~dl~ke~~~~l~~~~f~G~kl~~~k~~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~f~~~y~~~------~~~l 109 (311)
+|+||+|+|||+|.+++|+|+||||+|.++++|+++|++.+++. ++.|+|++.|..+ ..++
T Consensus 1 ~~~digk~ardll~~~~~~g~k~~v~~~~~~~f~~s~~~~~~~~-------------~~~~~~~~~~~~k~~~~~~~~t~ 67 (274)
T cd07303 1 TYAELGKSARDLFTKGYGGGIKLDVKTKSELEFTSSGSANTETI-------------ESTTKVGGSLETKYRWSPYGLTF 67 (274)
T ss_pred ChhHhhhhhHHhcccCCCCCEEEEEEecCCCccEEccccccccc-------------CCCceEEEEEEEeeeecCCCeEE
Confidence 59999999999988888889999999999999999999999863 2368888888763 2345
Q ss_pred EEEECCC--ccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEEEcCCCeeEEEEEEeecCceeeee
Q 021528 110 IGRVLTD--GRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGG 187 (311)
Q Consensus 110 ~~~~d~d--g~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk~~n~~~~~~s~lq~vt~~l~lG~ 187 (311)
+.+|++| +.+++++.++|.+++++++++++.|+++...+|+++||+++++++.+++.+.+++..+++|.++++|++|+
T Consensus 68 ~~~~~~dn~~~~~~~~~~~~~~glk~~~~~~~~~~~~~~~~q~~~~y~~~~~~~~l~~~~~gp~v~~~~~~g~~~~~~G~ 147 (274)
T cd07303 68 TEKWNTDNTLGLEITVEDQLSRGLKSTFDSSFSPNTGKKNAKIKTGYKRINLGCDVDFDIAGPLIRGALVLGYEGWLAGY 147 (274)
T ss_pred EEEEEcCCcceEEEEEecccCCCeEEEEEEEECCCCccEEEEEeccEEcCCeeEEEEeecCCCEEEEEEEEeecceEEEE
Confidence 5555555 55566777889999999999999887778899999999999999999997777788899999999999999
Q ss_pred EEEEeccCCceeeEEEEEEeC--CCeEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEecc-eE
Q 021528 188 EVFWAGQHRKSGIGYAARYEN--DKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQ-CR 264 (311)
Q Consensus 188 e~~~~~~~~~t~~~~~~rY~~--~~~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~~~-s~ 264 (311)
|+.|+..++.+.+++++.|.. ++|++++++++.+.+.+||||||+|++++|+|++|+.+++|++++||++|.+++ ++
T Consensus 148 e~~yd~~~~~~~~~~~~~y~~~y~d~~~s~~l~~~~~l~~Sy~hkvs~~~~~g~e~~~~~~~~e~~~~vG~~y~l~~~~~ 227 (274)
T cd07303 148 QMVFETVSRVTQSNFAVGYKTDYNEFQAHTNVNDGTEFGGSIYHKVNDKLEVGVNLAATAGNSNTRFGIAAKYQVDPDAC 227 (274)
T ss_pred EEEEeccccccccceEEEEEccCCCeEEEEEEcCCCeEEEEEEEEcCCceEEEEEEEeeccCCccEEEEEEEEecCCCCE
Confidence 999998765566666666666 899999999998899999999999999999999999989999999999999987 89
Q ss_pred EEEEEcCCceEEeeeeecccCceEEEEEEEEecCCCCeeeeEEEEeC
Q 021528 265 LRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG 311 (311)
Q Consensus 265 vk~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~~~~~kfG~gl~~G 311 (311)
|||+||++|+|++.||++|+|+++|+||++|||+++.||||+||+||
T Consensus 228 vkakids~g~v~~~~~~~l~~~~~ltls~~~D~~~~~~KfG~gl~~~ 274 (274)
T cd07303 228 FSASVNNSSLVGLGYTQTLKPGIKLTLSALLDHKAGGHKLGLGLEFQ 274 (274)
T ss_pred EEEEECCCceEEEEEEEEcCCCcEEEEEEEecCCCCCeeEEEEEEeC
Confidence 99999999999999999999999999999999999999999999998
No 3
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=100.00 E-value=6.8e-50 Score=365.63 Aligned_cols=261 Identities=38% Similarity=0.642 Sum_probs=230.0
Q ss_pred CCCcHHHhHHHHhhccCc-cccceEEEEEec--cCCCCeEEEEEEEeCCccCCCCCccccccCCcceEEEEEEeCCceEE
Q 021528 33 CPIPYEEIHREALMSLKP-ELFEGLRFDFTK--GLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLML 109 (311)
Q Consensus 33 ~Pg~f~dl~ke~~~~l~~-~~f~G~kl~~~k--~~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~f~~~y~~~~~~l 109 (311)
|||+|+||+|+|||+|.. ++|||+|||+++ ..+++|+++|.++++... +..|+|+++|.+.+..+
T Consensus 1 nP~~f~dl~k~akdll~~~y~f~g~kl~~~~~~~~~~~f~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 68 (273)
T PF01459_consen 1 NPGSFEDLGKEAKDLLPKDYNFDGFKLDVKKKTPNGPNFTVSHSFSLGTSV------------PSSYSFGAKYKGPKLTV 68 (273)
T ss_dssp -S-SCCCCCHCCHHHHCTTSSTTEEEEEEEEE-TTCEEEEEEEEEETTTT--------------EEEEEEEEEECEEEEE
T ss_pred CCCChHHHhHHHHHhccCCCCCcCEEEEEEecccCcceEEEEEEEecCCCC------------ccceEEEEEEeCceeeE
Confidence 799999999999998865 489999999999 789999999999998741 45899999999888889
Q ss_pred EEEECCCccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEEEcC--CCeeEEEEEEeecCceeeee
Q 021528 110 IGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGN--GALFGASYIQNVSPHLSLGG 187 (311)
Q Consensus 110 ~~~~d~dg~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk~~n--~~~~~~s~lq~vt~~l~lG~ 187 (311)
++++|+++.+++++.+.+.+++++++.+++.+++.....++++||.++++++++++.+ ..++.+||+|+++|+|++|+
T Consensus 69 ~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~ 148 (273)
T PF01459_consen 69 KGDTDNDGNLEASVRNKLSPGLKLKLSAQLSPGSGKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGA 148 (273)
T ss_dssp EEETTTEEEEEEEEESSTTTTEEEEEEEEE-TTTS-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEE
T ss_pred EEEeCCcccEEEEEecccCcceEEEEEEEEeecCCceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEE
Confidence 9999999999999999999999999999999877668999999999999999999975 66899999999999999999
Q ss_pred EEEEeccCCcee-----eEEEEEEeCCCeEEEEEE-cccceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEec
Q 021528 188 EVFWAGQHRKSG-----IGYAARYENDKMVATGQV-ASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILR 261 (311)
Q Consensus 188 e~~~~~~~~~t~-----~~~~~rY~~~~~~~~~~~-~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~~ 261 (311)
|+.|+...+... ++++.||..+++++++++ ++.+.+.+||+|++++++++|+|++++...++++++||++|.++
T Consensus 149 e~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e~~~~~~~~~~~~~vG~~~~l~ 228 (273)
T PF01459_consen 149 EATYDLSSGKSSKYNAGLSYAARYTHPDYTASATLSNNFGTLTASYFQKVNDKLQLGAELTYNLSSRESTFTVGYQYKLD 228 (273)
T ss_dssp EEEEETTTTCEEEEEEEEEEEET----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEEEEEETTCCEEEEEEEEEEEEC
T ss_pred EEEEecccCCcCcceEEEEEeccccceeEEEEEEEcCCCCEEEEEEEEEeccceeeeeeeeecccCCCceEEEEEEEEcC
Confidence 999998775333 667777777799999999 56889999999999999999999999999999999999999999
Q ss_pred ce-EEEEEEcCCceEEeeeeecccCceEEEEEEEEecCCCCeeee
Q 021528 262 QC-RLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFG 305 (311)
Q Consensus 262 ~s-~vk~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~~~~~kfG 305 (311)
++ +||++||++|+|++.||++|+|+++|+||+++||++..||||
T Consensus 229 ~~~~vk~kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~KfG 273 (273)
T PF01459_consen 229 DSSTVKAKVDSNGRVSASYEQKLNPGVTLTLSAELDHKNNNHKFG 273 (273)
T ss_dssp TTEEEEEEEETTSEEEEEEEEEECTTEEEEEEEEECTT-C-EEEE
T ss_pred cccEEEEEEcCCCEEEEEEEEecCCCcEEEEEEEEccCCCCCCcC
Confidence 87 999999999999999999999999999999999999999998
No 4
>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.7e-51 Score=367.77 Aligned_cols=273 Identities=37% Similarity=0.615 Sum_probs=246.0
Q ss_pred ccccccCCCCCCCcHHHhHHHHhhccCccccceEEEEEeccCCCCeEEEEEEEeCCccCCCCCccccccCCcceEEEEEE
Q 021528 23 EEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANY 102 (311)
Q Consensus 23 ~~~~~~~~l~~Pg~f~dl~ke~~~~l~~~~f~G~kl~~~k~~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~f~~~y 102 (311)
.+.+...+++|||++++||+||+ ++|-.++|+|++++|.++++|+|+|++.+++.. ++.|+|+++|
T Consensus 19 ~~~~~~~~~~Npgt~e~L~~~~~--~~p~~~~g~kl~v~k~Ls~~fqvs~t~~ls~~~------------~sg~~fg~ty 84 (308)
T KOG3296|consen 19 LSRRACYNLLNPGTVEELHSEAS--VDPTLSEGVKLGVNKGLSNHFQVSPTFVLSHIA------------ASGYRFGPTY 84 (308)
T ss_pred cccccccccCCcHHHHHhhhhhc--cCceeecceEeeecccccCceEeccceecccCc------------cccceeccce
Confidence 35666778999999999999999 689999999999999999999999999998753 3456666665
Q ss_pred eC--------CceEEEEEECCCccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEEEcCCCe----
Q 021528 103 ID--------PKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGAL---- 170 (311)
Q Consensus 103 ~~--------~~~~l~~~~d~dg~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk~~n~~~---- 170 (311)
++ ...++.|++|+||+|+++++++|.++++.|+++|+++ .+....|++.+|.+.|+++.+...||.+
T Consensus 85 ~~~~q~~~~~~~~il~G~vD~~Gslna~l~~~l~~~Lr~K~~~q~~~-~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sg 163 (308)
T KOG3296|consen 85 VYTFQASPTEAFLILRGDVDNDGSLNARLIHQLTDNLRSKVALQIQQ-SKEVESQVTGEYRGRDYTLTLPLGNPDLGESG 163 (308)
T ss_pred eeeeccccCCCcceEEEecCCCCchhheeecccchhhHHHHHHHhcc-hhhhccccccceecccccccccccCcccccch
Confidence 54 4579999999999999999999999999999999986 4467889999999999999999887763
Q ss_pred -eEEEEEEeecCceeeeeEEEEec--cCCceeeEEEEEEeCCCeEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeecc
Q 021528 171 -FGASYIQNVSPHLSLGGEVFWAG--QHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMS 247 (311)
Q Consensus 171 -~~~s~lq~vt~~l~lG~e~~~~~--~~~~t~~~~~~rY~~~~~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~ 247 (311)
+.++|+|+|||+|++|+|+.|+. +...+.+++++||...+|+++++++..|.. ++|||++.++++.|+|++++++-
T Consensus 164 i~v~~~lqsvT~~LsLG~El~~~~~~~~~~s~ls~a~RY~~~~~~~~~t~g~~g~~-~~y~~r~~~~~~~~ve~~~~~~~ 242 (308)
T KOG3296|consen 164 IYVASYLQSVTPRLSLGGELLYQRRPGPEESGLSYAGRYEHSNWDATVTLGQQGLT-GTYYQRAVEKLQMGVEFETNTRL 242 (308)
T ss_pred HHHHHHHhhhcccccccceeEeccCCCccccceeeeeeeeecceeeEEecccccce-ehhhhhhhhhhccceeEeeeccc
Confidence 67999999999999999999998 346799999999999999999999877655 99999999999999999999998
Q ss_pred ceeEEEEEEEEEec--ceEEEEEEcCCceEEeeeeecccCceEEEEEEEEecCCCCeeeeEEEEeC
Q 021528 248 RDVTSSVGYDYILR--QCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG 311 (311)
Q Consensus 248 ~~~~~~vG~~y~~~--~s~vk~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~~~~~kfG~gl~~G 311 (311)
++...+++++|+++ ++++||+|||+|+|++++|+||.++++|.||+++||.++++|||+||++|
T Consensus 243 ~~~~~t~a~~~~l~~~~s~~rg~vDSn~~v~~~lek~L~l~l~~~ls~~lnh~k~~~~~G~gl~~~ 308 (308)
T KOG3296|consen 243 QSTDVTAAYGYDLPTAQSVFRGSVDSNWSVGAVLEKKLPLPLTLALSAELNHVKNDFKFGFGLTIG 308 (308)
T ss_pred CCcceEEEEEeeccCccceEEEEeccCceehhhhHhhcCCCceeeeeeeecccccccccceeEEeC
Confidence 88888888888886 58999999999999999999997799999999999999999999999997
No 5
>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.
Probab=100.00 E-value=2.3e-41 Score=279.91 Aligned_cols=149 Identities=30% Similarity=0.466 Sum_probs=138.4
Q ss_pred CCCCCcHHHhHHHH-hhcc-CccccceEEEEEecc--CCCCeEEEEEEEeCCccCCCCCccccccCCcceEEEEEEeCCc
Q 021528 31 LPCPIPYEEIHREA-LMSL-KPELFEGLRFDFTKG--LNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPK 106 (311)
Q Consensus 31 l~~Pg~f~dl~ke~-~~~l-~~~~f~G~kl~~~k~--~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~f~~~y~~~~ 106 (311)
|+|||+||+||||| ||++ .++.|||+|+|++|. ++|+|+++|+++||+.. .+.|+|+|+|++++
T Consensus 1 l~nPGt~E~l~re~~rdv~l~~~~FeG~R~d~~K~~~ls~~FqvSHs~~mgs~~------------~p~Y~FgA~y~~~~ 68 (161)
T TIGR00989 1 LSNPGTIENLAKEVSRDTLLSNYMFTGLRADVTKAFSLAPLFQVSHQFAMGSQR------------LPPYAFSALFGTNQ 68 (161)
T ss_pred CcCCccHHHHHHHHhhhcccCccccccEEEEEecccccCCceeEEEEEEeCCCC------------CCCceeeeEecCCc
Confidence 68999999999999 8874 689999999999999 59999999999999854 23699999999999
Q ss_pred eEEEEEECCCccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEEEcCCC--------eeEEEEEEe
Q 021528 107 LMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGA--------LFGASYIQN 178 (311)
Q Consensus 107 ~~l~~~~d~dg~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk~~n~~--------~~~~s~lq~ 178 (311)
++++|++|+||+|++|++|+|.+++++|+++|+.++. ...+|+++||+|+||++++|+.||+ ++++||+|+
T Consensus 69 ~~l~G~id~dG~l~ar~~~~~~~~~~~K~~~Q~~~~~-~~~~Q~e~DY~G~Dft~~lk~~Np~~~~~~~sGi~v~sylQs 147 (161)
T TIGR00989 69 LFAQGNLDNDGAVSTRLNYRWGDRTISKVQFQISGGQ-PDMCQFEHDHLGDDFSASLKAINPSFLEKGLTGIFVGSYLQS 147 (161)
T ss_pred EEEEEEeCCCCCEEEEEEEeeCcceeEEEEEEecCCC-CceEEEEEEecCCeEEEEEEEcCcccccccceEEEEEeeeeh
Confidence 9999999999999999999999999999999998643 4789999999999999999999987 689999999
Q ss_pred ecCceeeeeEEEEe
Q 021528 179 VSPHLSLGGEVFWA 192 (311)
Q Consensus 179 vt~~l~lG~e~~~~ 192 (311)
|||+|++|+|+.|+
T Consensus 148 VTp~LaLG~E~~yq 161 (161)
T TIGR00989 148 VTPRLGLGLEALWQ 161 (161)
T ss_pred hCcceeeeeeeEeC
Confidence 99999999999996
No 6
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=100.00 E-value=3.8e-38 Score=289.37 Aligned_cols=265 Identities=20% Similarity=0.295 Sum_probs=228.6
Q ss_pred CCcHHHhHHHHhhccC-ccccceEEEEEeccCCCCeEEEEEEEeCCccCCCCCccccccCCcceEEEEEEeCCceEEEEE
Q 021528 34 PIPYEEIHREALMSLK-PELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGR 112 (311)
Q Consensus 34 Pg~f~dl~ke~~~~l~-~~~f~G~kl~~~k~~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~f~~~y~~~~~~l~~~ 112 (311)
||.|.||+|.|||+|. +++|..++||+++...+.+.++-....... .......+++.|..+.+.+..+
T Consensus 1 p~~f~digK~akDll~k~y~~g~~kl~~~tk~~~gv~~~~~g~~~~~-----------~~~~~g~~e~k~~~~~~t~~~k 69 (276)
T cd07306 1 PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPD-----------TGKVSGSLEAKYKIKGLTLTQK 69 (276)
T ss_pred CCceeccccchhhcccCCCCCCCEEEEEEEECCCCeEEEEEEEeCCC-----------CceEEEEEEEEEEeCCEEEEEE
Confidence 8999999999999986 567799999999887665555533333221 0123456677787777889999
Q ss_pred ECCCccEEEEEEe--eccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEEEc--CCCeeEEEEEEeecCceeeeeE
Q 021528 113 VLTDGRLNARVKC--DLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFG--NGALFGASYIQNVSPHLSLGGE 188 (311)
Q Consensus 113 ~d~dg~L~~~~~~--~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk~~--n~~~~~~s~lq~vt~~l~lG~e 188 (311)
|++++.|.+++.. .+.+++++.+.+.++|.......+++++|..+.+.+...+. ++.++.++..... ++|.+|+|
T Consensus 70 ~~t~n~l~t~v~~~~~~~~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g~-~~~~~G~e 148 (276)
T cd07306 70 WNTDNVLLTEITIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLGY-KGFLLGAE 148 (276)
T ss_pred EeCCCceeEEEEECcccCCcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEecccCCCeeEEEEEecc-cceEEEEE
Confidence 9999999998865 35699999999999987667788999999999998887763 3556677776665 89999999
Q ss_pred EEEeccC-CceeeEEEEEEeCCCeEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEecc-eEEE
Q 021528 189 VFWAGQH-RKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQ-CRLR 266 (311)
Q Consensus 189 ~~~~~~~-~~t~~~~~~rY~~~~~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~~~-s~vk 266 (311)
+.|+... +.+.++++++|+.++|++++++++.+.+.+||+|+++|++++|+|+.|+...+++++++|++|.+++ +.+|
T Consensus 149 ~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~l~~~~~l~~S~~~kv~~~l~~g~e~~~~~~~~~~~~~vg~~y~l~~~~~vk 228 (276)
T cd07306 149 VVYDTAKSKFTKYNFALGYTNGDFELSLKLNNGKTLRGSYFHKVSPRLAVGAKVTWYSGTNETTFAVGGQYALDPDALVK 228 (276)
T ss_pred EEEeccCCcEeeEEEEEEEecCCeEEEEEECCCCEEEEEEEEEcCCCeEEEEEEEEecCCCCcEEEEEEEEEcCCCCEEE
Confidence 9999875 4789999999999999999999998899999999999999999999999988999999999999986 8999
Q ss_pred EEEcCCceEEeeeeecccCceEEEEEEEEecCC---CCeeeeEEEEe
Q 021528 267 GKIDSNGCAAAYLEERLNMGLNFILSAEIDHRK---KDYKFGFGLTV 310 (311)
Q Consensus 267 ~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~~---~~~kfG~gl~~ 310 (311)
|+||++|+++++||++|+|+++++||+++|+++ +.||||+||+|
T Consensus 229 akv~~~g~v~~~y~~kl~~~v~~tls~~~d~~~~~~~~~K~G~~l~~ 275 (276)
T cd07306 229 AKVNNDGQLGLSYQHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSLSL 275 (276)
T ss_pred EEECCCceEEEEEEEEcCCCcEEEEEEEeeccCcCCCCCeEEEEEEe
Confidence 999999999999999999999999999999987 89999999986
No 7
>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-33 Score=253.66 Aligned_cols=267 Identities=18% Similarity=0.259 Sum_probs=220.2
Q ss_pred CCCCCcHHHhHHHHhhccC-ccccceEEEEEeccCCCCeEEEEEEEeCCccCCCCCccccccCCcceEEEEEEeCC--ce
Q 021528 31 LPCPIPYEEIHREALMSLK-PELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDP--KL 107 (311)
Q Consensus 31 l~~Pg~f~dl~ke~~~~l~-~~~f~G~kl~~~k~~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~f~~~y~~~--~~ 107 (311)
.+.||+|.||+|.|||+|+ +|.|+-.++++++.....+..+.+-.-... . ......+.+.|..+ ++
T Consensus 1 ~~~pp~y~digK~ArDl~~kgy~~g~~~~~~~t~t~~gv~ftssg~~~~~--------~---~~v~gsle~k~~~~~~gl 69 (281)
T KOG3126|consen 1 MMAPPTYADLGKLARDLFNKGYGFGLWKLDLKTKTESGVEFTSSGSVNTD--------T---GKVKGSLETKYKDKDYGL 69 (281)
T ss_pred CCCCcchhhhhhHHHHHhhCCCCCCcEEEEEEeeccCcEEEEeeeccccc--------e---eeeeeeeEEEEeeccCce
Confidence 3689999999999999986 567777777777765553443322211110 0 11223345555544 67
Q ss_pred EEEEEECCCccEEEEEEe--eccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEE---EcCCCeeEEEEEEeecCc
Q 021528 108 MLIGRVLTDGRLNARVKC--DLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQ---FGNGALFGASYIQNVSPH 182 (311)
Q Consensus 108 ~l~~~~d~dg~L~~~~~~--~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk---~~n~~~~~~s~lq~vt~~ 182 (311)
+++.+|++|++|.++|.. ++.+++++.+++.+.|+....+.++++.|..+.+++... ..+|.+.+ +... -.+.
T Consensus 70 t~t~kw~Tdn~L~t~I~~~~~~~pglk~~~~~s~~p~~~~ks~Klk~~y~~~~~~~~~~~~~~~~P~i~~-s~v~-g~~g 147 (281)
T KOG3126|consen 70 TLTEKWNTDNTLGTEITVEDQLAPGLKLTLDSSFSPNTGKKSGKLKLSYARDHFNLGADDFLTANPLILG-SLVL-GHEG 147 (281)
T ss_pred EEEEEeecCCccceEEEEccccCCceEEEEEEeecCcccccceeeecccccccceeeeccccccCCeEEE-EEEe-cccc
Confidence 999999999999999876 689999999999999977778899999999999988863 34565554 4444 3568
Q ss_pred eeeeeEEEEeccCC-ceeeEEEEEEeCCCeEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEec
Q 021528 183 LSLGGEVFWAGQHR-KSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILR 261 (311)
Q Consensus 183 l~lG~e~~~~~~~~-~t~~~~~~rY~~~~~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~~ 261 (311)
|.+|+|+.|+...+ .+.+++++.|..++++++..++|.+.+..|+||+++++++.+++++|.....+..++||.+|.+|
T Consensus 148 ~l~G~~~~fDt~~~~~t~~n~~lgy~~~d~~l~~~~nn~~~~~~s~yq~v~~~~~~~~~~~~~~~~~~~~~~igt~Y~lD 227 (281)
T KOG3126|consen 148 WLLGYETTFDTASGKLTKYNAALGYTTEDFTLHLNLNNGTEFLASIYQRVNEKLETGANAEWIAGSSNTRFTIGTKYALD 227 (281)
T ss_pred eEEEEeEEEeccCCcEeeEEEEEEeecCCcEEEEEecccchhhhhhhhhhcchheeeeeEEEeecCCccEEEEEEEeccC
Confidence 99999999999775 69999999999999999999999999999999999999999999999998889999999999997
Q ss_pred c-eEEEEEEcCCceEEeeeeecccCceEEEEEEEEecCC--CCeeeeEEEEe
Q 021528 262 Q-CRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRK--KDYKFGFGLTV 310 (311)
Q Consensus 262 ~-s~vk~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~~--~~~kfG~gl~~ 310 (311)
. +.|||||++.|++++.|+|+|||++.++||+++|.++ ..||||++|.|
T Consensus 228 ~~t~VkAKVnn~g~~gl~yq~~lrp~i~~t~s~~~d~~~~~~~hK~Glsl~~ 279 (281)
T KOG3126|consen 228 PDTSVKAKVNNAGLAGLGYQQTLRPGIKVTLSAEFDGKALDAGHKFGLSLAL 279 (281)
T ss_pred CCceeeeeecCCceeeEEEEEecCCCcEEEEEEEEeccCCCCCcceeEEEee
Confidence 4 6899999999999999999999999999999999773 34999999986
No 8
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=99.81 E-value=4.4e-17 Score=150.02 Aligned_cols=193 Identities=17% Similarity=0.144 Sum_probs=167.3
Q ss_pred cceEEEEEeccCCCCeEEEEEEEeCCccCCCCCccccccCCcceEEEEEEeCCceEEEEE-ECCC-----ccEEEEEEee
Q 021528 53 FEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGR-VLTD-----GRLNARVKCD 126 (311)
Q Consensus 53 f~G~kl~~~k~~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~f~~~y~~~~~~l~~~-~d~d-----g~L~~~~~~~ 126 (311)
-.-+...+.+.+++++.+.+++.+... ....|+++..|.++...+..+ .+++ |.+.+++.+.
T Consensus 77 ~g~l~~~~~~~~~~~~~~k~~~~~~~~------------~~~~~q~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~ylq~ 144 (279)
T cd07305 77 DGNLNARIIHQLGDRLRSKLQAQLQDS------------KFNMSQLELDYRGDDFTASLKLANPDILNETGIYVASYLQS 144 (279)
T ss_pred CCceeEEEEeccCcceEEEEEEEecCC------------CceeEEEEEEEcCCceEEEEEEeCCCcccccEEEEEEEEEE
Confidence 344566677778889999988888542 135799999999987766666 5554 8999999999
Q ss_pred ccccceeEEEEEec--CCCCcceeeEEEEEEeCCeEEEEEEcCCCeeEEEEEEeecCceeeeeEEEEeccCCceeeEEEE
Q 021528 127 LSDNLSLKANAQLT--NEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAA 204 (311)
Q Consensus 127 ~~~~l~~k~~~~~~--~~~~~~~~~~~~dy~g~d~t~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~ 204 (311)
+++++.+..++.+. +..+...+++.++|.++||++++++.+.+.+.+||+|+|++++++|+|+.|+...+.+.+.+|.
T Consensus 145 vt~~l~lG~E~~~~~~~~~~~~~~~~~~rY~~~d~~~s~~l~~~~~l~asY~~kvs~~l~lG~el~~~~~~~es~~tvg~ 224 (279)
T cd07305 145 VTPKLALGGELVYQRVPGNGISVLSYAARYTAGNWIASGQLGAQGGLHLSYYRKLSDKLQLGVELELNLRTRESTATLGY 224 (279)
T ss_pred ccCcEEEEEEEEEEEcCCCCceeEEEEEEEccCCEEEEEEEcCCCeEEEEEEEEcccceEeeeeeeecccCCceeEEEEE
Confidence 99999999999988 6777888999999999999999999988889999999999999999999999988889999999
Q ss_pred EEeCCCeEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEE
Q 021528 205 RYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYD 257 (311)
Q Consensus 205 rY~~~~~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~ 257 (311)
+|..+++.+++++++.|.+++.|.|++++++.++...+++...++..+.+|..
T Consensus 225 ~y~~~~~~~k~~ids~g~v~~~~e~~l~~~~~l~ls~~~d~~~~~~kfG~gl~ 277 (279)
T cd07305 225 QYDFRQSRFRGSIDSNGKVSAVLEKRLPLPLSLLLSGELNHVKNDYKFGFGLT 277 (279)
T ss_pred EEEcCCCEEEEEEcCCCEEEEEEEEecCCCeEEEEEEEEcccCCcceEEEEEE
Confidence 99999999999999999999999999999999999999988776655555543
No 9
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=99.61 E-value=1.9e-12 Score=119.12 Aligned_cols=164 Identities=20% Similarity=0.333 Sum_probs=131.0
Q ss_pred ceEEEEEEeCCceEEEEEECCC-c-cEEEEEEeeccccceeEEEEEecCC-CCcceeeEEEEEEeCCeEEEEEEcCCCee
Q 021528 95 HYEFGANYIDPKLMLIGRVLTD-G-RLNARVKCDLSDNLSLKANAQLTNE-PHMSHGMINFDYKGKDYRTQFQFGNGALF 171 (311)
Q Consensus 95 ~y~f~~~y~~~~~~l~~~~d~d-g-~L~~~~~~~~~~~l~~k~~~~~~~~-~~~~~~~~~~dy~g~d~t~~lk~~n~~~~ 171 (311)
..++.+.|..+..-+..+++-. + .+++.+... .+++.+-.++.+.-. .+...+.+.+.|.++||++++++.+...+
T Consensus 106 s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g-~~~~~~G~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~l~~~~~l 184 (276)
T cd07306 106 SGKLKAGYKHDPININADVDLNKGPLVGASAVLG-YKGFLLGAEVVYDTAKSKFTKYNFALGYTNGDFELSLKLNNGKTL 184 (276)
T ss_pred eEEEEEEEecCCeeEEEEecccCCCeeEEEEEec-ccceEEEEEEEEeccCCcEeeEEEEEEEecCCeEEEEEECCCCEE
Confidence 5678888988877777777664 2 233444443 367666666665432 34567889999999999999999888889
Q ss_pred EEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCC-eEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeecc-ce
Q 021528 172 GASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDK-MVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMS-RD 249 (311)
Q Consensus 172 ~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~-~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~-~~ 249 (311)
.+||+|+|++++++|+|+.|....+.+.+++|++|..++ +++++++++.+.++++|.|+++|++++++..+.+... .+
T Consensus 185 ~~S~~~kv~~~l~~g~e~~~~~~~~~~~~~vg~~y~l~~~~~vkakv~~~g~v~~~y~~kl~~~v~~tls~~~d~~~~~~ 264 (276)
T cd07306 185 RGSYFHKVSPRLAVGAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQLGLSYQHKLRPGVTLTLSAGFDAKNLNQ 264 (276)
T ss_pred EEEEEEEcCCCeEEEEEEEEecCCCCcEEEEEEEEEcCCCCEEEEEECCCceEEEEEEEEcCCCcEEEEEEEeeccCcCC
Confidence 999999999999999999999877789999999999886 8999999999999999999999999999998888754 22
Q ss_pred eEEEEEEEEE
Q 021528 250 VTSSVGYDYI 259 (311)
Q Consensus 250 ~~~~vG~~y~ 259 (311)
....+|....
T Consensus 265 ~~~K~G~~l~ 274 (276)
T cd07306 265 GGHKFGLSLS 274 (276)
T ss_pred CCCeEEEEEE
Confidence 4455555444
No 10
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=99.50 E-value=4.9e-11 Score=109.58 Aligned_cols=161 Identities=16% Similarity=0.223 Sum_probs=123.3
Q ss_pred eEEEEEEeCCceEEEEEECCCccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEe--CCeEEEEEEcCCCeeEE
Q 021528 96 YEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKG--KDYRTQFQFGNGALFGA 173 (311)
Q Consensus 96 y~f~~~y~~~~~~l~~~~d~dg~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g--~d~t~~lk~~n~~~~~~ 173 (311)
.++..-|.++...+..++|..|.+-........++|.+-.++.+.-..+.....+.+.|.+ +||.+++++.+...+.+
T Consensus 108 ~q~~~~y~~~~~~~~l~~~~~gp~v~~~~~~g~~~~~~G~e~~yd~~~~~~~~~~~~~y~~~y~d~~~s~~l~~~~~l~~ 187 (274)
T cd07303 108 AKIKTGYKRINLGCDVDFDIAGPLIRGALVLGYEGWLAGYQMVFETVSRVTQSNFAVGYKTDYNEFQAHTNVNDGTEFGG 187 (274)
T ss_pred EEEeccEEcCCeeEEEEeecCCCEEEEEEEEeecceEEEEEEEEeccccccccceEEEEEccCCCeEEEEEEcCCCeEEE
Confidence 3455556666666666677666654433334567777766666543223345677888988 89999999977678899
Q ss_pred EEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCC-eEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeeccceeEE
Q 021528 174 SYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDK-MVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTS 252 (311)
Q Consensus 174 s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~-~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~ 252 (311)
||+|+|+++|++|+|+.|....+.+.+.+|.+|..++ .++++++++.|.+++.|.|+++|.+.+....+.+....+-.+
T Consensus 188 Sy~hkvs~~~~~g~e~~~~~~~~e~~~~vG~~y~l~~~~~vkakids~g~v~~~~~~~l~~~~~ltls~~~D~~~~~~Kf 267 (274)
T cd07303 188 SIYHKVNDKLEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASVNNSSLVGLGYTQTLKPGIKLTLSALLDHKAGGHKL 267 (274)
T ss_pred EEEEEcCCceEEEEEEEeeccCCccEEEEEEEEecCCCCEEEEEECCCceEEEEEEEEcCCCcEEEEEEEecCCCCCeeE
Confidence 9999999999999999999766788999999999997 889999999999999999999998888777777766544444
Q ss_pred EEEE
Q 021528 253 SVGY 256 (311)
Q Consensus 253 ~vG~ 256 (311)
.+|.
T Consensus 268 G~gl 271 (274)
T cd07303 268 GLGL 271 (274)
T ss_pred EEEE
Confidence 4444
No 11
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=99.49 E-value=8.7e-11 Score=107.22 Aligned_cols=155 Identities=25% Similarity=0.299 Sum_probs=130.2
Q ss_pred cceEEEEEEeCCceEEEEEECC--CccEEEEEEeeccccceeEEEEEecCCC-CcceeeEEEEEEeC----CeEEEEEEc
Q 021528 94 AHYEFGANYIDPKLMLIGRVLT--DGRLNARVKCDLSDNLSLKANAQLTNEP-HMSHGMINFDYKGK----DYRTQFQFG 166 (311)
Q Consensus 94 ~~y~f~~~y~~~~~~l~~~~d~--dg~L~~~~~~~~~~~l~~k~~~~~~~~~-~~~~~~~~~dy~g~----d~t~~lk~~ 166 (311)
..+++++.|.++...+..+++. .+.+.+.+...+.|++.+-.++.+.... ....+.+.+.|.++ ++++++++.
T Consensus 105 ~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~e~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~ 184 (273)
T PF01459_consen 105 KSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGAEATYDLSSGKSSKYNAGLSYAARYTHPDYTASATLS 184 (273)
T ss_dssp EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEEEEEEETTTTCEEEEEEEEEEEET----TEEEEEEE-
T ss_pred eeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEEEEEEecccCCcCcceEEEEEeccccceeEEEEEEEc
Confidence 4788999999998877887776 6777888888889999999888875533 23334556777777 999999994
Q ss_pred -CCCeeEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCCe-EEEEEEcccceEEEEEEEEccCCeEEEEEeeee
Q 021528 167 -NGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKM-VATGQVASTGMVALSYVQKLSEKVSLATDLMYN 244 (311)
Q Consensus 167 -n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~-~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~ 244 (311)
+...+.+||+|++++++.+|+|+.|....+.+.+.+|.+|..++. ++.++|++.|.++++|-++++|.+.+++..+.+
T Consensus 185 ~~~~~l~~sy~~k~~~~~~~g~e~~~~~~~~~~~~~vG~~~~l~~~~~vk~kvds~g~v~~~~~~~l~~~~~l~ls~~~d 264 (273)
T PF01459_consen 185 NNFGTLTASYFQKVNDKLQLGAELTYNLSSRESTFTVGYQYKLDDSSTVKAKVDSNGRVSASYEQKLNPGVTLTLSAELD 264 (273)
T ss_dssp ETTTEEEEEEEEESSTTEEEEEEEEEETTCCEEEEEEEEEEEECTTEEEEEEEETTSEEEEEEEEEECTTEEEEEEEEEC
T ss_pred CCCCEEEEEEEEEeccceeeeeeeeecccCCCceEEEEEEEEcCcccEEEEEEcCCCEEEEEEEEecCCCcEEEEEEEEc
Confidence 677889999999999999999999999888899999999999998 899999999999999999999999998888887
Q ss_pred eccc
Q 021528 245 YMSR 248 (311)
Q Consensus 245 ~~~~ 248 (311)
....
T Consensus 265 ~~~~ 268 (273)
T PF01459_consen 265 HKNN 268 (273)
T ss_dssp TT-C
T ss_pred cCCC
Confidence 6544
No 12
>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]
Probab=99.22 E-value=3.5e-09 Score=96.26 Aligned_cols=118 Identities=19% Similarity=0.348 Sum_probs=103.1
Q ss_pred CCcceeeEEEEEEeCCeEEEEEEcCCCeeEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCC-eEEEEEEcccc
Q 021528 143 PHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDK-MVATGQVASTG 221 (311)
Q Consensus 143 ~~~~~~~~~~dy~g~d~t~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~-~~~~~~~~~~g 221 (311)
.+...+.+.+.|..+|+++++.+.|-..+.+|++|+|...+..|.++.|......+.+++|.+|..|+ .++.+++++.+
T Consensus 161 ~~~t~~n~~lgy~~~d~~l~~~~nn~~~~~~s~yq~v~~~~~~~~~~~~~~~~~~~~~~igt~Y~lD~~t~VkAKVnn~g 240 (281)
T KOG3126|consen 161 GKLTKYNAALGYTTEDFTLHLNLNNGTEFLASIYQRVNEKLETGANAEWIAGSSNTRFTIGTKYALDPDTSVKAKVNNAG 240 (281)
T ss_pred CcEeeEEEEEEeecCCcEEEEEecccchhhhhhhhhhcchheeeeeEEEeecCCccEEEEEEEeccCCCceeeeeecCCc
Confidence 34567789999999999999999988889999999999999999999999987789999999999987 55999999999
Q ss_pred eEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEe
Q 021528 222 MVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYIL 260 (311)
Q Consensus 222 ~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~ 260 (311)
.+++.|.|+++|++.++...+++...-..-..+|..+.|
T Consensus 241 ~~gl~yq~~lrp~i~~t~s~~~d~~~~~~~hK~Glsl~~ 279 (281)
T KOG3126|consen 241 LAGLGYQQTLRPGIKVTLSAEFDGKALDAGHKFGLSLAL 279 (281)
T ss_pred eeeEEEEEecCCCcEEEEEEEEeccCCCCCcceeEEEee
Confidence 999999999999999999998887643322667766655
No 13
>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.
Probab=98.81 E-value=6.1e-07 Score=75.02 Aligned_cols=99 Identities=11% Similarity=0.108 Sum_probs=84.0
Q ss_pred cceeeEEEEEEeCCeEEEEEEcCCCeeEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCCeEEEEEEcc-----
Q 021528 145 MSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVAS----- 219 (311)
Q Consensus 145 ~~~~~~~~dy~g~d~t~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~~~~~~~~~----- 219 (311)
...+.+..-|.++..-+.-.+.+.+-+.+.+.+.+++++...+.++.+..+ ....++-..|+++||++++++.|
T Consensus 55 ~p~Y~FgA~y~~~~~~l~G~id~dG~l~ar~~~~~~~~~~~K~~~Q~~~~~-~~~~Q~e~DY~G~Dft~~lk~~Np~~~~ 133 (161)
T TIGR00989 55 LPPYAFSALFGTNQLFAQGNLDNDGAVSTRLNYRWGDRTISKVQFQISGGQ-PDMCQFEHDHLGDDFSASLKAINPSFLE 133 (161)
T ss_pred CCCceeeeEecCCcEEEEEEeCCCCCEEEEEEEeeCcceeEEEEEEecCCC-CceEEEEEEecCCeEEEEEEEcCccccc
Confidence 446888888888776666677766677889999999999999999987543 36677889999999999999887
Q ss_pred ---cceEEEEEEEEccCCeEEEEEeeee
Q 021528 220 ---TGMVALSYVQKLSEKVSLATDLMYN 244 (311)
Q Consensus 220 ---~g~~~~sY~~kvs~~l~lg~el~~~ 244 (311)
.|.+.++|.|.|+|++.+|.|+.|+
T Consensus 134 ~~~sGi~v~sylQsVTp~LaLG~E~~yq 161 (161)
T TIGR00989 134 KGLTGIFVGSYLQSVTPRLGLGLEALWQ 161 (161)
T ss_pred ccceEEEEEeeeehhCcceeeeeeeEeC
Confidence 3588999999999999999999985
No 14
>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=4.3e-08 Score=89.93 Aligned_cols=241 Identities=17% Similarity=0.173 Sum_probs=163.2
Q ss_pred CCCCcccccccCCCCCCCcHHHhHHHHhhccCccccceEEEEEeccCCCCeEEEEEEEeCCccCCCCCccccccCCcceE
Q 021528 18 AKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYE 97 (311)
Q Consensus 18 ~~~~~~~~~~~~~l~~Pg~f~dl~ke~~~~l~~~~f~G~kl~~~k~~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~ 97 (311)
++++..+..+...++.+..++.++..+-+-|..+.+...++.-...+..++.++|.|.++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~Npgt~e~L~~~~~~~p~~~~g~kl~v~k~Ls~~fqvs~t~~---------------- 69 (308)
T KOG3296|consen 6 AKSKLVEAVPYSNLSRRACYNLLNPGTVEELHSEASVDPTLSEGVKLGVNKGLSNHFQVSPTFV---------------- 69 (308)
T ss_pred CCccccccccccccccccccccCCcHHHHHhhhhhccCceeecceEeeecccccCceEecccee----------------
Confidence 4556677778888899999999999988878888877777777777788888888777765310
Q ss_pred EEEEEeCCceEEEEEECCCccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEEEcCCCeeEEEEEE
Q 021528 98 FGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQ 177 (311)
Q Consensus 98 f~~~y~~~~~~l~~~~d~dg~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk~~n~~~~~~s~lq 177 (311)
+++.+ ...+.+.+-... ..+..+ ....--+.-.+.+.+-..+..++
T Consensus 70 ---------------ls~~~----~sg~~fg~ty~~--~~q~~~-------------~~~~~il~G~vD~~Gslna~l~~ 115 (308)
T KOG3296|consen 70 ---------------LSHIA----ASGYRFGPTYVY--TFQASP-------------TEAFLILRGDVDNDGSLNARLIH 115 (308)
T ss_pred ---------------cccCc----cccceeccceee--eecccc-------------CCCcceEEEecCCCCchhheeec
Confidence 00001 111111111101 111111 11111111122233334567777
Q ss_pred eecCceeeeeEEEEeccCCceeeEEEEEEeCCCeEEEEEEc-----ccceEEEEEEEEccCCeEEEEEeeeee--cccee
Q 021528 178 NVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVA-----STGMVALSYVQKLSEKVSLATDLMYNY--MSRDV 250 (311)
Q Consensus 178 ~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~~~~~~~~-----~~g~~~~sY~~kvs~~l~lg~el~~~~--~~~~~ 250 (311)
.++++|...+.++.+.. +....++-..|...++++..... ..|++.++|.|.+++++.+|.|+.|.. ..+++
T Consensus 116 ~l~~~Lr~K~~~q~~~~-k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~LsLG~El~~~~~~~~~~s 194 (308)
T KOG3296|consen 116 QLTDNLRSKVALQIQQS-KEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPRLSLGGELLYQRRPGPEES 194 (308)
T ss_pred ccchhhHHHHHHHhcch-hhhccccccceecccccccccccCcccccchHHHHHHHhhhcccccccceeEeccCCCcccc
Confidence 77888888887777663 35667888889999888877766 467888999999999999999999988 46789
Q ss_pred EEEEEEEEEecceEEEEEEcCCceEEeeeeecccCceEEEEEEEEecC--CCCeeeeEEEEe
Q 021528 251 TSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHR--KKDYKFGFGLTV 310 (311)
Q Consensus 251 ~~~vG~~y~~~~s~vk~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~--~~~~kfG~gl~~ 310 (311)
.+++++||...++...+.....|..+.+|.+. .+.+......+.|.. +.+.-+++|+.+
T Consensus 195 ~ls~a~RY~~~~~~~~~t~g~~g~~~~y~~r~-~~~~~~~ve~~~~~~~~~~~~t~a~~~~l 255 (308)
T KOG3296|consen 195 GLSYAGRYEHSNWDATVTLGQQGLTGTYYQRA-VEKLQMGVEFETNTRLQSTDVTAAYGYDL 255 (308)
T ss_pred ceeeeeeeeecceeeEEecccccceehhhhhh-hhhhccceeEeeecccCCcceEEEEEeec
Confidence 99999999998888888888899999999554 455555555555543 445666666554
No 15
>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes. Proteins in this family are typically between 415 and 473 amino acids in length.
Probab=97.49 E-value=0.0016 Score=58.82 Aligned_cols=137 Identities=20% Similarity=0.313 Sum_probs=93.9
Q ss_pred EEEEEECC-CccEEEEEEeeccccceeEEEEEecCC---CCcceeeEEEEEEeCCeEEEEEEc-CCCeeEEEEEEee---
Q 021528 108 MLIGRVLT-DGRLNARVKCDLSDNLSLKANAQLTNE---PHMSHGMINFDYKGKDYRTQFQFG-NGALFGASYIQNV--- 179 (311)
Q Consensus 108 ~l~~~~d~-dg~L~~~~~~~~~~~l~~k~~~~~~~~---~~~~~~~~~~dy~g~d~t~~lk~~-n~~~~~~s~lq~v--- 179 (311)
++-|++-- ...|.|=+..++.+.+.+.+.+.-.+. .......+-+.+....|...+.+. +.+++++-.++.+
T Consensus 86 LlYGRmylP~s~LeAl~ikRlsp~~Ql~~~~vS~~~~~~~~~~~ll~~lQ~dtgk~~~E~lyStd~~L~G~R~L~NFg~~ 165 (260)
T PF12519_consen 86 LLYGRMYLPSSRLEALYIKRLSPTTQLLLKAVSSPHSGLPNGGTLLGYLQHDTGKYSQEYLYSTDDALLGFRGLYNFGPD 165 (260)
T ss_pred EEEEEEecChhhhhhhhhhcCCHhHheeeeeeecccccCCCCCeEEEEEEecCCCCceEEEEEcCCceEEEEEEEecCCC
Confidence 44444432 344455455566776666555443322 223344556666666677776654 5666666555531
Q ss_pred -----------------------cCceeeeeEEEEeccCCceeeEEEEEEeC------CCeEEEEEEcc-cceEEEEEEE
Q 021528 180 -----------------------SPHLSLGGEVFWAGQHRKSGIGYAARYEN------DKMVATGQVAS-TGMVALSYVQ 229 (311)
Q Consensus 180 -----------------------t~~l~lG~e~~~~~~~~~t~~~~~~rY~~------~~~~~~~~~~~-~g~~~~sY~~ 229 (311)
-.+|++|+|+.|....+..+++.|+||.. .+.++++++|. .|.+..+|--
T Consensus 166 ~~~~~~~~~~~~~~~s~~~~~~~~~r~S~GaE~yys~~~ks~G~STglRf~Tlp~~tg~PlTlTlt~NPl~GhiSstYs~ 245 (260)
T PF12519_consen 166 PSKSNNSPNNSLYNNSRVDEERIYGRFSAGAELYYSALNKSPGCSTGLRFCTLPAHTGKPLTLTLTLNPLMGHISSTYSV 245 (260)
T ss_pred ccccccccccccccccccccccccceEeeccEEEEEeeccCCcccceeEEEecCCCCCCCeEEEEEeccccccchheeee
Confidence 11899999999999888899999999954 35899999998 6999999999
Q ss_pred EccCCeEEEEEeeee
Q 021528 230 KLSEKVSLATDLMYN 244 (311)
Q Consensus 230 kvs~~l~lg~el~~~ 244 (311)
|.++.+++++.+.+|
T Consensus 246 k~s~~~a~~SrfdFN 260 (260)
T PF12519_consen 246 KASPNSAFCSRFDFN 260 (260)
T ss_pred eccCCceEEeecccC
Confidence 999999998887653
No 16
>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....
Probab=96.60 E-value=0.75 Score=44.47 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=67.7
Q ss_pred eEEEEEEcCCCeeEEEEEEeecCceeeeeEEEEeccCCceee-EEEEEEeCC----CeEEEEEEcccceEEEEEEEEccC
Q 021528 159 YRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGI-GYAARYEND----KMVATGQVASTGMVALSYVQKLSE 233 (311)
Q Consensus 159 ~t~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~-~~~~rY~~~----~~~~~~~~~~~g~~~~sY~~kvs~ 233 (311)
.....++.-|..+.+++.+.++++|.+.+.+.|..=...... ...+..... +........+.-.+.++.-++++|
T Consensus 260 ~~~~~~~~~P~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~~Y~~~~ 339 (427)
T PF03349_consen 260 ADGEVDLDLPASLSLGVAYRFTDKLLLSADYEWTDWSSFDNLYNDQFTFANGNGSTNNNIPFNWKDTWVYRLGAEYKFND 339 (427)
T ss_dssp EEEEEEEEB-EEEEEEEEEESSSSEEEEEEEEEEEGGG-SCEEEEEEEETTECTEEEEEEE---EEEEEEEEEEEEESSS
T ss_pred ccceeeeeeceeEEEEEEEecCCCEEEEEEEEEEEhhhhhhhcccccccccccccccccCCCCccchheeeeeeEEEcCc
Confidence 344555666999999999999999999999999853332222 223333211 122333344556777888889999
Q ss_pred CeEEEEEeeeeec-------------cceeEEEEEEEEEec
Q 021528 234 KVSLATDLMYNYM-------------SRDVTSSVGYDYILR 261 (311)
Q Consensus 234 ~l~lg~el~~~~~-------------~~~~~~~vG~~y~~~ 261 (311)
++++-+-+.|+.. .....+++|+.|++.
T Consensus 340 ~l~lr~G~~y~~sp~~~~~~~~~~p~~~~~~~s~G~~y~~~ 380 (427)
T PF03349_consen 340 KLTLRAGYAYDSSPIPDETRDPLLPDTDRHWLSAGAGYRFS 380 (427)
T ss_dssp SEEEEEEEEEEE-SS-CCC-BSSS--SSEEEEEEEEEEESS
T ss_pred CEEEEEEEEEeccccCccccchhhccCCcEEEEEeeEEEcC
Confidence 9999999988764 234568889988886
No 17
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=95.92 E-value=0.49 Score=46.42 Aligned_cols=105 Identities=17% Similarity=0.191 Sum_probs=70.7
Q ss_pred EEEEEcCCCeeEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCCeEE--EEE-EcccceEEEEEEEEccCCeEE
Q 021528 161 TQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVA--TGQ-VASTGMVALSYVQKLSEKVSL 237 (311)
Q Consensus 161 ~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~~~--~~~-~~~~g~~~~sY~~kvs~~l~l 237 (311)
..+++.=|.....++.+++.|+|.+.+.+.|-.=++...+.+... ..+-.. .-. ..|.-.+.++--|+++|++++
T Consensus 278 ~~~~l~lP~~~el~~~~~~~d~w~~~~s~~wT~WS~f~~l~~~~~--~~~~~~~~~~~~yrD~wt~a~G~~Y~~nd~~tl 355 (440)
T COG2067 278 GKLTLSLPASAELSGQHKVADQWAIHGSVKWTDWSSFDKLDFVFT--FGKTLFAKTEDGYRDTWTVALGTTYKFNDQWTL 355 (440)
T ss_pred ceEEEecCcEEEEeeeeccCCCeEEEEEEEEeeccCCceEEEEEc--CCCccccccccccccccEEeeeceeEcCccceE
Confidence 556666688899999999999999999999875443332332222 122111 111 334557778888899999999
Q ss_pred EEEeeeeec-------------cceeEEEEEEEEEec-ceEEEE
Q 021528 238 ATDLMYNYM-------------SRDVTSSVGYDYILR-QCRLRG 267 (311)
Q Consensus 238 g~el~~~~~-------------~~~~~~~vG~~y~~~-~s~vk~ 267 (311)
.+-+.|+.. +....+++|..|++. +.+|.+
T Consensus 356 ragiayD~s~s~~~~~~~~iPd~Dr~~~s~G~~Y~~t~n~~vd~ 399 (440)
T COG2067 356 RAGIAYDQSPSPAQNRSISIPDTDRWWLSLGTTYKFTKNLEVDA 399 (440)
T ss_pred eeeeeecCCCCcccccccccCCCCcEEEeCccEEecCCCeEEEE
Confidence 999999765 113457888999885 345553
No 18
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=95.82 E-value=2.1 Score=42.01 Aligned_cols=100 Identities=10% Similarity=0.128 Sum_probs=65.6
Q ss_pred EEEEEcCCCeeEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCCeE--EEEEEcccceEEEEEEEEccCCeEEE
Q 021528 161 TQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMV--ATGQVASTGMVALSYVQKLSEKVSLA 238 (311)
Q Consensus 161 ~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~~--~~~~~~~~g~~~~sY~~kvs~~l~lg 238 (311)
...++.-|..+.++..|+++|+|.+.+.+.|..=+....+.+ .+...... ......|.-.+.++.-++++|++.+-
T Consensus 279 ~~~~~~~P~~~~lg~~~~~~~~~~l~~d~~wt~WS~~~~l~i--~~~~g~~~~~~~~~w~D~w~~~~G~~Y~~n~~l~LR 356 (435)
T PRK10716 279 GSLTLNLPEMWEVSGYNRVAPQWAIHYSLAYTSWSQFQELKA--TSSNGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFR 356 (435)
T ss_pred cEEeecCCcEEEEEeEEecCCcEEEEEEEEEeeecccceEEE--EeCCCcceecccccceeeeEEEeeEEEECCCCeEEE
Confidence 344555688889999999999999999999975333222222 12111111 11112344466777778999999999
Q ss_pred EEeeeeec-------------cceeEEEEEEEEEecc
Q 021528 239 TDLMYNYM-------------SRDVTSSVGYDYILRQ 262 (311)
Q Consensus 239 ~el~~~~~-------------~~~~~~~vG~~y~~~~ 262 (311)
+-+.|+.. ..+..+++|+.|++.+
T Consensus 357 aG~~yd~spv~~~~r~~~~Pd~dr~~~s~G~~y~~~~ 393 (435)
T PRK10716 357 TGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNK 393 (435)
T ss_pred EeeEeccCCCCcCcccccccCCCCeEEEeeeEEEcCC
Confidence 99988732 2345689999998853
No 19
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=89.78 E-value=21 Score=34.98 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=10.8
Q ss_pred eeeEEEEEEeCC-CeEEEEEE
Q 021528 198 SGIGYAARYEND-KMVATGQV 217 (311)
Q Consensus 198 t~~~~~~rY~~~-~~~~~~~~ 217 (311)
-.+.+|+.|+.. +|++.+-+
T Consensus 339 w~~~~G~~Y~~n~~l~LRaG~ 359 (435)
T PRK10716 339 YRIALGTTYYYDDNWTFRTGI 359 (435)
T ss_pred eEEEeeEEEECCCCeEEEEee
Confidence 446666677643 35554443
No 20
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=88.92 E-value=16 Score=36.03 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=26.9
Q ss_pred EEEEEcccceEEEEEEEEccCCeEEEEEeeeee
Q 021528 213 ATGQVASTGMVALSYVQKLSEKVSLATDLMYNY 245 (311)
Q Consensus 213 ~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~ 245 (311)
+.+++.-...+.++++|+++|++.+..++.|..
T Consensus 278 ~~~~l~lP~~~el~~~~~~~d~w~~~~s~~wT~ 310 (440)
T COG2067 278 GKLTLSLPASAELSGQHKVADQWAIHGSVKWTD 310 (440)
T ss_pred ceEEEecCcEEEEeeeeccCCCeEEEEEEEEee
Confidence 445555566788999999999999999999854
No 21
>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....
Probab=87.85 E-value=27 Score=33.64 Aligned_cols=84 Identities=12% Similarity=0.069 Sum_probs=45.4
Q ss_pred EEEEEcccceEEEEEEEEccCCeEEEEEeeeee-ccceeEEEEEEEEEe----cceEEEEEEcCCceEEeeeeecccCce
Q 021528 213 ATGQVASTGMVALSYVQKLSEKVSLATDLMYNY-MSRDVTSSVGYDYIL----RQCRLRGKIDSNGCAAAYLEERLNMGL 287 (311)
Q Consensus 213 ~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~-~~~~~~~~vG~~y~~----~~s~vk~~ids~g~v~~~~e~~l~p~~ 287 (311)
....+.-...+.+++.++++|++.+.++++|.. +.-+........... ....+.-..++.+.+.+..|.++.|.+
T Consensus 262 ~~~~~~~P~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~~Y~~~~~l 341 (427)
T PF03349_consen 262 GEVDLDLPASLSLGVAYRFTDKLLLSADYEWTDWSSFDNLYNDQFTFANGNGSTNNNIPFNWKDTWVYRLGAEYKFNDKL 341 (427)
T ss_dssp EEEEEEB-EEEEEEEEEESSSSEEEEEEEEEEEGGG-SCEEEEEEEETTECTEEEEEEE---EEEEEEEEEEEEESSSSE
T ss_pred ceeeeeeceeEEEEEEEecCCCEEEEEEEEEEEhhhhhhhcccccccccccccccccCCCCccchheeeeeeEEEcCcCE
Confidence 344455566889999999999999999999953 221111111111110 011233333445556666666666665
Q ss_pred EEEEEEEEe
Q 021528 288 NFILSAEID 296 (311)
Q Consensus 288 ~l~lS~~ld 296 (311)
+|-..-..|
T Consensus 342 ~lr~G~~y~ 350 (427)
T PF03349_consen 342 TLRAGYAYD 350 (427)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 555555555
No 22
>PRK10993 outer membrane protease; Reviewed
Probab=86.77 E-value=25 Score=33.01 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=91.9
Q ss_pred EEEEC--CCccEEEEEEeeccccceeEEEEEec--CCCCcceeeEEEEEEeCC---eEE-------EEEEcCCCeeEEEE
Q 021528 110 IGRVL--TDGRLNARVKCDLSDNLSLKANAQLT--NEPHMSHGMINFDYKGKD---YRT-------QFQFGNGALFGASY 175 (311)
Q Consensus 110 ~~~~d--~dg~L~~~~~~~~~~~l~~k~~~~~~--~~~~~~~~~~~~dy~g~d---~t~-------~lk~~n~~~~~~s~ 175 (311)
+-+|. +-..|.+++..++.++|++.....+. .+. ..+.+-||...+ |+= .+...+.--+.+.+
T Consensus 62 qLdW~~~n~~iik~~~~~~~~~~lsl~a~gw~~l~s~~---G~M~DyDWl~~~~~~wt~~S~h~~t~l~ya~e~dln~~~ 138 (314)
T PRK10993 62 QLDWKIKNAAIIKGDINWDLLPRLSLGASGWTTLASGG---GHMVDYDWLDSSQPGWTDRSHHPDTDLNYANEFDLNLKG 138 (314)
T ss_pred EeeccccCceEEEeecccccccceEEeeeEEEEEecCC---CccccccccCCCCCCCcceecCCCCchhhhhhcceecce
Confidence 44554 44577889999999999998886543 211 112233333221 111 11111111112222
Q ss_pred EEeecCceeeeeEEEEeccCCceeeEEEEEEeC--C---CeEEEEEEcccceEEEEEEEEcc-CCeEEEEEeeeeeccce
Q 021528 176 IQNVSPHLSLGGEVFWAGQHRKSGIGYAARYEN--D---KMVATGQVASTGMVALSYVQKLS-EKVSLATDLMYNYMSRD 249 (311)
Q Consensus 176 lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~--~---~~~~~~~~~~~g~~~~sY~~kvs-~~l~lg~el~~~~~~~~ 249 (311)
.---.++..+|+-+.|+.. +..--++|+.|.. + +.+.+ -+.+..+++|.|+.. |.+-++.+..++ .
T Consensus 139 w~l~~~~yklG~~aGyqy~-~~sw~A~GG~y~Y~~~~~r~~~g~---fPd~~~~I~Y~Q~f~~pyiGL~g~y~~~----~ 210 (314)
T PRK10993 139 WLLQNPNYRLGVMAGYQET-RFSWTAYGGSYIYSNGGFRDDIGT---FPDGERGIGYKQRFKMPYIGLTGSYRYD----D 210 (314)
T ss_pred eeecCCCceeeeEeeeEEE-eceeEccCceEEcCCCCCCCCccc---cCCCccceeeEEEecceeeeEEEEEEec----c
Confidence 2222566778887777762 3334456666544 3 22222 245678899999995 666666666653 2
Q ss_pred eEEEEEEEEEe------------cceEEEEEEcCC--ceEEeeeeecccCceEEEEEEEEe
Q 021528 250 VTSSVGYDYIL------------RQCRLRGKIDSN--GCAAAYLEERLNMGLNFILSAEID 296 (311)
Q Consensus 250 ~~~~vG~~y~~------------~~s~vk~~ids~--g~v~~~~e~~l~p~~~l~lS~~ld 296 (311)
..+....+|.. ++-++|-++++. .-+.+...-.+.|..++-+++...
T Consensus 211 ~ef~~~~kys~wv~a~d~D~H~lR~ltF~d~~~~s~y~~l~~~agY~vTp~~~v~v~~~y~ 271 (314)
T PRK10993 211 FEFGGLLKYSGWVSASDNDEHYLRNLTFRDKFKNSPYYSASINAGYYVTPNAKLYVEGAYN 271 (314)
T ss_pred EEEeeEeecceeEeecccchhhcccccchhcccCCceeEEEEEEeEEeCCCeEEEEEEEEE
Confidence 33444444421 122344333332 224555566677777777777665
No 23
>PF11383 DUF3187: Protein of unknown function (DUF3187); InterPro: IPR021523 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=86.02 E-value=31 Score=32.51 Aligned_cols=97 Identities=23% Similarity=0.267 Sum_probs=58.8
Q ss_pred EEEEEeecCceeeeeEEEEeccCC---------ceeeEEEEEEeCC-CeEEEEEEc-----------------ccceEEE
Q 021528 173 ASYIQNVSPHLSLGGEVFWAGQHR---------KSGIGYAARYEND-KMVATGQVA-----------------STGMVAL 225 (311)
Q Consensus 173 ~s~lq~vt~~l~lG~e~~~~~~~~---------~t~~~~~~rY~~~-~~~~~~~~~-----------------~~g~~~~ 225 (311)
-.+.+.-...+++|+.+-|..... ...+++...|..+ +|.+.++++ +.....+
T Consensus 163 yql~~~~~~~lslg~slk~~t~d~~~~~GSGs~d~~l~ln~s~~~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~ 242 (319)
T PF11383_consen 163 YQLYQNDHHGLSLGGSLKYPTGDSGRFTGSGSFDQALQLNYSYRYGSKHSLYATLGYTFRGDSDVLEGIPYRNNTWFGGL 242 (319)
T ss_pred EEEecCCCceEEEEEEEEecCCCcccccCCccccceEEEEeeeccCCcceeeeeeeEEEecCcccccccccccceEEEEE
Confidence 344555556888888888876431 2233444444555 554433321 1235678
Q ss_pred EEEEEccCCeEEEEEeeeeec---------cceeEEEEEEEEEe-cceEEEEEE
Q 021528 226 SYVQKLSEKVSLATDLMYNYM---------SRDVTSSVGYDYIL-RQCRLRGKI 269 (311)
Q Consensus 226 sY~~kvs~~l~lg~el~~~~~---------~~~~~~~vG~~y~~-~~s~vk~~i 269 (311)
+|-.+++|++.+-+|+.+... +....+++|+||.+ +.+.+-..+
T Consensus 243 g~~y~~~~~~~l~~q~~~~qg~~~~~~~l~~~s~e~~lG~r~~~~~~~alei~~ 296 (319)
T PF11383_consen 243 GYGYQLTENHSLLAQYDYYQGFYDSSSELSEPSNELTLGYRYQLSERSALEISV 296 (319)
T ss_pred EEEEEecCCEEEEEEEEEeeccccCchhhcccceEEEeeeEEEEcCCceEEEEE
Confidence 888888999988888887543 22356788888888 555444433
No 24
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=83.50 E-value=41 Score=31.87 Aligned_cols=74 Identities=24% Similarity=0.310 Sum_probs=36.9
Q ss_pred eEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEecceEEEEEEcCCceEEeeeeecccCceEEEEEEEEecCC--
Q 021528 222 MVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRK-- 299 (311)
Q Consensus 222 ~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~~~s~vk~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~~-- 299 (311)
.+.++.-|.+++++.+-+.+.|... +..=..+-|....+++.++-++++.+.|.+........
T Consensus 298 ~~~~~~~h~~~~~l~~~~~~~~~~~---------------~y~~~~r~D~~~~~~~~~~y~~~r~~~~~~~y~~~~~~S~ 362 (381)
T PF10082_consen 298 SVSLGWTHQLTPRLSLSLSAGYENR---------------DYQGSDREDDTYSAGLGLTYRLNRWLSLSAGYRYEDRDSN 362 (381)
T ss_pred EEEEEEEEEeeeeEEEEEEEEEEEe---------------EcCCCCceeeEEEEEEEEEEEecCCEEEEEEEEEEEeeCC
Confidence 3456666666666666666665433 11111144555556666666665544433333332221
Q ss_pred ------CCeeeeEEEEe
Q 021528 300 ------KDYKFGFGLTV 310 (311)
Q Consensus 300 ------~~~kfG~gl~~ 310 (311)
+.+.+++++.+
T Consensus 363 ~~~~~y~~n~v~l~l~~ 379 (381)
T PF10082_consen 363 IPSYDYDRNRVGLGLTY 379 (381)
T ss_pred CCCCceEeEEEEEEEEE
Confidence 24666666653
No 25
>TIGR03509 OMP_MtrB_PioB decaheme-associated outer membrane protein, MtrB/PioB family. Members of this protein family are integral proteins of the bacterial outer membrane, associated with multiheme c-type cytochromes involved in electron transfer. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decaheme cytochrome MtrA and large, surface-exposed decaheme cytochrome MtrC.
Probab=83.11 E-value=61 Score=33.57 Aligned_cols=88 Identities=15% Similarity=0.125 Sum_probs=42.2
Q ss_pred EEEEEEEEccCCeEEEEEeeeeeccc------------------eeEEEEEEEEEec-ceEEEEEEcCCceEEeeee-ec
Q 021528 223 VALSYVQKLSEKVSLATDLMYNYMSR------------------DVTSSVGYDYILR-QCRLRGKIDSNGCAAAYLE-ER 282 (311)
Q Consensus 223 ~~~sY~~kvs~~l~lg~el~~~~~~~------------------~~~~~vG~~y~~~-~s~vk~~ids~g~v~~~~e-~~ 282 (311)
+.+.|...+.+++.+++++.|....- .-.+.++++|.+. +..+++..-..-...--|+ ..
T Consensus 538 lgl~~~~~~~~~LsL~~~ysY~~~~~Dt~~g~~~~~~~pdy~~~~~~l~l~a~Y~~~~~l~l~l~~~~eny~d~Dy~~~~ 617 (649)
T TIGR03509 538 AGLTYEGLLDLKLSLGGDYSYSNGDSDYKSTTNTGGPYPDYFSNQHRLKLYGKYQLSKSSSLRLDYRYERYSDNDYAYNN 617 (649)
T ss_pred EEeEeccccCCcEEEeeeEEEecCCCcceecccccccCCcccceEEEEEEEEEEecCCCeEEEEEEEEEEEeecchhhcC
Confidence 44555555667777777777744321 1335666666653 3333333211101111111 12
Q ss_pred ccC-ce-EEEEEEEEecCCCCeeeeEEEEe
Q 021528 283 LNM-GL-NFILSAEIDHRKKDYKFGFGLTV 310 (311)
Q Consensus 283 l~p-~~-~l~lS~~ld~~~~~~kfG~gl~~ 310 (311)
+.+ .+ .+..=|.++|.=+.|.+|+.++.
T Consensus 618 ~~~~~~~~~~~~g~~~~~Y~ah~~~~s~~y 647 (649)
T TIGR03509 618 TAYDTIATVTTLGDQNPNYNAHYLGVSYSY 647 (649)
T ss_pred CCcccccccccccccCCCceeeEEEEEEEE
Confidence 222 11 22233667776678888888763
No 26
>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes. Proteins in this family are typically between 415 and 473 amino acids in length.
Probab=80.73 E-value=32 Score=31.35 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=52.6
Q ss_pred CeEEEEEeeeeeccceeEEEEEEEEEec-c-----eEEEEEEcC-CceEEeeeeecccCceEEEEEEEEec
Q 021528 234 KVSLATDLMYNYMSRDVTSSVGYDYILR-Q-----CRLRGKIDS-NGCAAAYLEERLNMGLNFILSAEIDH 297 (311)
Q Consensus 234 ~l~lg~el~~~~~~~~~~~~vG~~y~~~-~-----s~vk~~ids-~g~v~~~~e~~l~p~~~l~lS~~ld~ 297 (311)
++.+|+|+=|.......-++.|.||... . -++...+|- -|.|++.|--+-.+ .++||..+|+
T Consensus 191 r~S~GaE~yys~~~ks~G~STglRf~Tlp~~tg~PlTlTlt~NPl~GhiSstYs~k~s~--~~a~~SrfdF 259 (260)
T PF12519_consen 191 RFSAGAELYYSALNKSPGCSTGLRFCTLPAHTGKPLTLTLTLNPLMGHISSTYSVKASP--NSAFCSRFDF 259 (260)
T ss_pred eEeeccEEEEEeeccCCcccceeEEEecCCCCCCCeEEEEEeccccccchheeeeeccC--CceEEeeccc
Confidence 8999999999998888899999999763 2 268888988 89999999888766 5788888875
No 27
>PRK12580 outer membrane protease; Reviewed
Probab=79.18 E-value=46 Score=31.07 Aligned_cols=176 Identities=14% Similarity=0.098 Sum_probs=88.9
Q ss_pred EEEECCC--ccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeCC---eE-------EEEEEcCCCeeEEEEEE
Q 021528 110 IGRVLTD--GRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKD---YR-------TQFQFGNGALFGASYIQ 177 (311)
Q Consensus 110 ~~~~d~d--g~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d---~t-------~~lk~~n~~~~~~s~lq 177 (311)
+-.|.-+ -.+.+++..++.+++++.....+.-.. -...+.+-||..+. |+ ..|...|.--+++....
T Consensus 62 QLdWk~~N~aiikg~i~wd~~~~ltl~a~gwttl~~-g~g~M~DyDW~~~~~~~WTd~S~hp~T~LnyanefDln~k~W~ 140 (312)
T PRK12580 62 QLDWKIKNVAILKGDISWDPYSFLTLNARGWTSLAS-GSGNMDDYDWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWL 140 (312)
T ss_pred EeeccccCceEEeeecccccccceEEcceEEEEEcc-CCcccccccccCCCCCCCcccccCCCCcccchhhcceecceee
Confidence 4455544 466788888889999887777653211 11222233433211 11 01111111112233333
Q ss_pred eecCceeeeeEEEEeccCCceeeEEEEEE--eCCCeEEEEEEcccceEEEEEEEEcc-CCeEEEEEeeeeeccceeEEEE
Q 021528 178 NVSPHLSLGGEVFWAGQHRKSGIGYAARY--ENDKMVATGQVASTGMVALSYVQKLS-EKVSLATDLMYNYMSRDVTSSV 254 (311)
Q Consensus 178 ~vt~~l~lG~e~~~~~~~~~t~~~~~~rY--~~~~~~~~~~~~~~g~~~~sY~~kvs-~~l~lg~el~~~~~~~~~~~~v 254 (311)
-..|+..+|+-+.||.. +.+=.+.|+.| ..+..+.+ -+.+..+++|-||+. |-+-++.+-.++. +++
T Consensus 141 l~~~~y~lgv~aGyQ~t-~~sw~a~GGsy~Y~~~~~~g~---fPd~~~gIgYkQrf~mpYiGL~g~Yr~~~------fef 210 (312)
T PRK12580 141 LQDENYKAGITAGYQET-RFSWTATGGSYSYNNGAYTGN---FPKGVRVIGYNQRFSMPYIGLAGQYRIND------FEL 210 (312)
T ss_pred ecCCCeeEeeeecceee-eeeEEecccceEecCCCceee---cCCCccceeeeEecccceeeeeeEEEEee------EEE
Confidence 34577788888888763 22333445545 33332222 245678899999996 5555554444432 334
Q ss_pred EEEEEe--------------cceEEEEEEcCCceE--EeeeeecccCceEEEEEEEEe
Q 021528 255 GYDYIL--------------RQCRLRGKIDSNGCA--AAYLEERLNMGLNFILSAEID 296 (311)
Q Consensus 255 G~~y~~--------------~~s~vk~~ids~g~v--~~~~e~~l~p~~~l~lS~~ld 296 (311)
++..+. ++-+||-++++.--. ++-.--.+.|..++-+.+..+
T Consensus 211 ~~~lK~S~wv~a~D~DeHy~RnltF~e~~~ns~yys~~~~agYyvtpnak~f~e~~~~ 268 (312)
T PRK12580 211 NALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYS 268 (312)
T ss_pred eeEEEecceEeccccchhhhccceehhhccCCccEEEEEecceEecCCeeEEEEEEEE
Confidence 333332 223455555543332 223334556777777777665
No 28
>PRK10993 outer membrane protease; Reviewed
Probab=78.71 E-value=19 Score=33.73 Aligned_cols=87 Identities=20% Similarity=0.140 Sum_probs=54.1
Q ss_pred cceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEecceEEEEEE--cCCceEEeeeeecccCceEEEEEEEEec
Q 021528 220 TGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRLRGKI--DSNGCAAAYLEERLNMGLNFILSAEIDH 297 (311)
Q Consensus 220 ~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~~~s~vk~~i--ds~g~v~~~~e~~l~p~~~l~lS~~ld~ 297 (311)
.-.+.+.|+.--+++..+|+-+-|+. .+..--..|+.|......+|..+ =.++.++..|+|++..+ -+.|.++.-+
T Consensus 131 e~dln~~~w~l~~~~yklG~~aGyqy-~~~sw~A~GG~y~Y~~~~~r~~~g~fPd~~~~I~Y~Q~f~~p-yiGL~g~y~~ 208 (314)
T PRK10993 131 EFDLNLKGWLLQNPNYRLGVMAGYQE-TRFSWTAYGGSYIYSNGGFRDDIGTFPDGERGIGYKQRFKMP-YIGLTGSYRY 208 (314)
T ss_pred hcceecceeeecCCCceeeeEeeeEE-EeceeEccCceEEcCCCCCCCCccccCCCccceeeEEEecce-eeeEEEEEEe
Confidence 33566777777788888888777765 34444456666665333222211 25889999999999653 4555555544
Q ss_pred CCCCeeeeEEEEe
Q 021528 298 RKKDYKFGFGLTV 310 (311)
Q Consensus 298 ~~~~~kfG~gl~~ 310 (311)
. .++|+..+..
T Consensus 209 ~--~~ef~~~~ky 219 (314)
T PRK10993 209 D--DFEFGGLLKY 219 (314)
T ss_pred c--cEEEeeEeec
Confidence 2 4777766543
No 29
>PF07642 DUF1597: Outer membrane protein family (DUF1597); InterPro: IPR011486 This is a family of proteins for which no function is known yet.
Probab=69.90 E-value=97 Score=28.97 Aligned_cols=175 Identities=17% Similarity=0.125 Sum_probs=0.0
Q ss_pred ceEEEEEeccCC----------CCeEEEEEEEeCCccCCCCCccccccCCcceE-EEEEE-eCCceEEEEEECCC-----
Q 021528 54 EGLRFDFTKGLN----------QKFSLSHSVIMGPTEIPSQSTETIKIPTAHYE-FGANY-IDPKLMLIGRVLTD----- 116 (311)
Q Consensus 54 ~G~kl~~~k~~s----------~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~-f~~~y-~~~~~~l~~~~d~d----- 116 (311)
+|+.+++-+-.+ .++..+|++.+... |.... +.++| .+++..++..|.+.
T Consensus 99 ~gl~v~~G~f~t~iGyE~~~~~~N~~ys~s~~~~~~-------------P~~~tGv~~~y~~~d~~~~~~~v~nG~d~~~ 165 (344)
T PF07642_consen 99 KGLSVKAGRFYTPIGYESIFAPDNFNYSRSYLFNYG-------------PFTHTGVRATYAFNDKWSLMLGVVNGWDTIF 165 (344)
T ss_pred CCEEEEEeeeeCCCCeeccCCCCCceEehhhhcccC-------------CcEEEeEEEEEEcCCCEEEEEEEECCccccc
Q ss_pred ------ccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEEEcCCCeeEEEEEEeecCceeeeeEEE
Q 021528 117 ------GRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVF 190 (311)
Q Consensus 117 ------g~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~ 190 (311)
-.+.+++.+...+.+.+.+..-..++..... .-.+..++.+-+-.+++++|.++.|..
T Consensus 166 ~~~n~~~~~~~~~~y~~~~~~~~~~~~~~g~~~~~~~----------------~~~~~~~~dl~~~~~~~~~~~l~~~~~ 229 (344)
T PF07642_consen 166 FDNNGGPSFGGQLSYSPNGKLSLYLNYYYGPENPDGA----------------NNNNRFFYDLVASYKPTDKLTLGLEYD 229 (344)
T ss_pred ccCCCCcEEEEEEEEeeCCCeEEEEEEEeCCCCcccc----------------cCCceEEEEEEEEEEcCCcEEEEEEEE
Q ss_pred EeccCCceeeEEEEEEeCCCeEEEEEEcccceEEEEEEEEccCCeEEEEEeee--eec-------------cceeEEEEE
Q 021528 191 WAGQHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMY--NYM-------------SRDVTSSVG 255 (311)
Q Consensus 191 ~~~~~~~t~~~~~~rY~~~~~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~--~~~-------------~~~~~~~vG 255 (311)
|......... +..-...-+-+.+-+. .+++|++.+++..+| +.. ..-..++++
T Consensus 230 y~~~~~~~~~--~~~~~~~~~g~a~y~~----------y~~~~~~~l~~R~E~~~d~~~~~~~~~~~~~~~~~~~~~T~t 297 (344)
T PF07642_consen 230 YGWQDNGPDA--GGGGDASWYGAALYLS----------YQFSDKWSLGVRYEYFDDKDGVGAIIGTGTGNGFSYYALTLT 297 (344)
T ss_pred EEEecCCccc--CCCCCccEEEEEEEEE----------EEcCCCEEEEEEEEEEECCCCccccccccCCCCcceEEEEEE
Q ss_pred EEEEe-cceEEEEEE
Q 021528 256 YDYIL-RQCRLRGKI 269 (311)
Q Consensus 256 ~~y~~-~~s~vk~~i 269 (311)
..|++ +...+|.-+
T Consensus 298 ~~y~p~~nl~iR~E~ 312 (344)
T PF07642_consen 298 LNYKPTPNLMIRPEY 312 (344)
T ss_pred EEEEECCCEEEEEEE
No 30
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=65.66 E-value=1.7e+02 Score=30.31 Aligned_cols=127 Identities=17% Similarity=0.145 Sum_probs=66.3
Q ss_pred eEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCCeEEEEEEccc-ceEE--EEEEEEccCCeEEEEEeeeeecc
Q 021528 171 FGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVAST-GMVA--LSYVQKLSEKVSLATDLMYNYMS 247 (311)
Q Consensus 171 ~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~~~~~~~~~~-g~~~--~sY~~kvs~~l~lg~el~~~~~~ 247 (311)
+.++.-.++++.|.+-+-..++.-... ..-...+..++|.. .+.+. ..++ ++|...+.++|++|++..|....
T Consensus 475 ~~ld~~y~~~~~l~~~af~~~q~~~s~--Q~gs~~~~~~~W~~--~~~D~~~~~G~G~~~~~l~~~kL~lg~dYsys~~~ 550 (637)
T PF11854_consen 475 YDLDASYQPSDDLSLYAFYNQQWIDSD--QAGSQNFSTPDWTS--DTEDKVTTVGAGFSYQGLMDDKLSLGLDYSYSDSD 550 (637)
T ss_pred eeeeEEEEECCCeEEEEEEEeEeehhh--hccccCccCCCccc--cccceeEEEEeceEeecccCccEEEeeeEEEecCc
Confidence 345555566777777766666542211 01122233344532 22222 2344 45555588999999999997653
Q ss_pred ceeE------------------EEEEEEEEecceEEEEEEcCCceEEe--eeeecc---------cCc--eEEEEEEEEe
Q 021528 248 RDVT------------------SSVGYDYILRQCRLRGKIDSNGCAAA--YLEERL---------NMG--LNFILSAEID 296 (311)
Q Consensus 248 ~~~~------------------~~vG~~y~~~~s~vk~~ids~g~v~~--~~e~~l---------~p~--~~l~lS~~ld 296 (311)
-+.. +.+-++|.+ +.+..+.+ .||+.- .|. -.+..-+.++
T Consensus 551 s~~~~~~~~~~~~pd~~~~~h~l~~~~~y~l---------s~~~~lrl~y~yEr~~~~D~~~~g~~~~~i~~~~~~g~~~ 621 (637)
T PF11854_consen 551 SDTDVTQGGSGPYPDYYSRQHNLNLYARYQL---------SKNMSLRLDYRYERYSDTDWANDGVAPDSIPNLLTLGDLN 621 (637)
T ss_pred cceEeecccccCCCCceeeEEEEEEEEEEEe---------CCCeEEEEEEEEEeeeccchhhccccCCCccceeecCCCC
Confidence 3322 333334443 33333333 333321 121 1455556666
Q ss_pred cCCCCeeeeEEEEe
Q 021528 297 HRKKDYKFGFGLTV 310 (311)
Q Consensus 297 ~~~~~~kfG~gl~~ 310 (311)
|.=+.|.||+.++.
T Consensus 622 ~nY~ah~v~ls~~y 635 (637)
T PF11854_consen 622 HNYNAHYVGLSLSY 635 (637)
T ss_pred CCceeEEEEEEEEE
Confidence 66678999998864
No 31
>PF02530 Porin_2: Porin subfamily; InterPro: IPR003684 This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to Gram-negative porins []. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of Gram-negative bacteria.; GO: 0015288 porin activity, 0006810 transport, 0016020 membrane
Probab=63.57 E-value=83 Score=30.25 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=53.2
Q ss_pred eEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCCeEEEEEEcc--cceEEEEEEEEccCCeEEEEEeeeeeccc
Q 021528 171 FGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVAS--TGMVALSYVQKLSEKVSLATDLMYNYMSR 248 (311)
Q Consensus 171 ~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~~~~~~~~~--~g~~~~sY~~kvs~~l~lg~el~~~~~~~ 248 (311)
...+|.|.-+|.|.+-++..|.... ...++.++.|...+- + ....+ ...+.+...-.+.+.+++++|+.|.....
T Consensus 279 ~~~~~~~~w~~~w~~~~~~~~~~t~-~~~~~~~~s~~~~~~-~-~~~~~~~~~~v~anl~w~pv~~l~ig~E~~Y~~~d~ 355 (379)
T PF02530_consen 279 FDGAYYHNWNPQWRSYGGYQYNFTD-KVTITLGASYAVGDS-A-NGNDDFNIWQVGANLFWSPVKNLDIGAEYQYTDRDQ 355 (379)
T ss_pred ccceeeeccCcceeeeEEEEEcccC-ceeEechhhcccccc-c-cccCCCcEEEEEEEEEEEECCCcEEEEEEEEEecCC
Confidence 4567788888888887777776533 233444444400000 0 00111 22455777888889999999999977644
Q ss_pred ee---EEEEEEEEEec
Q 021528 249 DV---TSSVGYDYILR 261 (311)
Q Consensus 249 ~~---~~~vG~~y~~~ 261 (311)
+. ...-+..|++.
T Consensus 356 ~~~~~~~~~~~~~~~~ 371 (379)
T PF02530_consen 356 KNSDGDAKPGAVYELK 371 (379)
T ss_pred ccccccCCCcceeecC
Confidence 33 35666777764
No 32
>PF03895 YadA_anchor: YadA-like C-terminal region; InterPro: IPR005594 This region represents the C-terminal 120 amino acids of a family of surface-exposed bacterial proteins. YadA, an adhesin from Yersinia, was the first member of this family to be characterised. UspA2 from Moraxella was second. The Eib immunoglobulin-binding proteins from E. coli were third, followed by the DsrA proteins of Haemophilus ducreyi, amongst others. These proteins are homologous at their C-terminal and have predicted signal sequences, but they diverge elsewhere. The C-terminal 9 amino acids, consisting of alternating hydrophobic amino acids ending in F or W, comprise a targeting motif for the outer membrane of the Gram negative cell envelope. This region is important for oligomerisation [].; PDB: 3LT6_C 3LT7_B 3H7X_D 3H7Z_A 2GR8_E 2GR7_F 3EMO_C 2XZR_A.
Probab=61.56 E-value=60 Score=23.58 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=27.5
Q ss_pred ccceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEe
Q 021528 219 STGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYIL 260 (311)
Q Consensus 219 ~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~ 260 (311)
+...+.+.+.+++++++.+-+.+.+ ....+....+|..|.+
T Consensus 38 g~~A~A~G~~~~~~~~~~~~~~~s~-~~~~~~~~~~G~~~~w 78 (78)
T PF03895_consen 38 GESAVAVGASYRPNENVMVNAGVSY-GSGGDVGAGAGVSYSW 78 (78)
T ss_dssp TEEEEEEEEEEE-TSSEEEEEEEEE-ETTS--EEEEEEEEEE
T ss_pred CcccEEEEEEEEeCCCEEEEEEEEe-cCCCCEEEEEEEEeEC
Confidence 4456778888888888888888877 3466667777777653
No 33
>PF13557 Phenol_MetA_deg: Putative MetA-pathway of phenol degradation
Probab=61.48 E-value=1.1e+02 Score=26.68 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=14.6
Q ss_pred eEEEEEEEEccCCeEEEEEeee
Q 021528 222 MVALSYVQKLSEKVSLATDLMY 243 (311)
Q Consensus 222 ~~~~sY~~kvs~~l~lg~el~~ 243 (311)
.+.+.+-+.+++++.+++|..+
T Consensus 166 ~~~~~~~y~~~~~~~~~~~~~~ 187 (248)
T PF13557_consen 166 SANFALSYALTPKLSLGLEGYG 187 (248)
T ss_pred EEEEEEEEEcCcceEEeEEeEE
Confidence 3455556677777777777763
No 34
>cd00342 gram_neg_porins Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.
Probab=61.05 E-value=1.3e+02 Score=27.38 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=24.5
Q ss_pred EEEEEEEEccCCeEEEEEeeeeec-------cceeEEEEEEEEEecc
Q 021528 223 VALSYVQKLSEKVSLATDLMYNYM-------SRDVTSSVGYDYILRQ 262 (311)
Q Consensus 223 ~~~sY~~kvs~~l~lg~el~~~~~-------~~~~~~~vG~~y~~~~ 262 (311)
+.++..+++++++.+.++..+... .....+.+|++|.+.+
T Consensus 239 ~~lga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~G~~Y~~~~ 285 (329)
T cd00342 239 YELGATYQLTPALRLGAAYYYTKDRNDGGGDGKANQVALGADYALSK 285 (329)
T ss_pred EEEeEEEEcCCceEEEEEEEEEeccCCCCCCCCeEEEEEEEeEeecc
Confidence 345555567766777776665432 1235678888888753
No 35
>PRK04423 organic solvent tolerance protein; Provisional
Probab=54.42 E-value=2.3e+02 Score=30.27 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=62.4
Q ss_pred eEEEEEEeecCceeeeeEEEEeccCC-ceeeEEEEEEeCCC-eEEEEEEc----------ccceEEEEEEEEccCCeEEE
Q 021528 171 FGASYIQNVSPHLSLGGEVFWAGQHR-KSGIGYAARYENDK-MVATGQVA----------STGMVALSYVQKLSEKVSLA 238 (311)
Q Consensus 171 ~~~s~lq~vt~~l~lG~e~~~~~~~~-~t~~~~~~rY~~~~-~~~~~~~~----------~~g~~~~sY~~kvs~~l~lg 238 (311)
+.+...-++++.|.+...+.|+...+ ....++.++|..++ ..+.+... +..++.++....|++++.+.
T Consensus 619 ~v~~~~~~~~~~~~l~~~~~~d~~~~r~~~~~~~~~y~~~~~~~~nl~Yry~~~~~~~~~~~eq~~~s~~~pi~~~W~~~ 698 (798)
T PRK04423 619 WVADANYMINDRWTLGATYQWNPNSRREDLASLRTRYLLPNDGIINLAYRYRRNLIDNSDQLKQADFSFLYPINPRWSAV 698 (798)
T ss_pred eEEEEEEEecCcEEEEeEEEECCccCcceeEEEEEEEcCCCCcEEEEEEEEecccccccCChhheeEEEEEEecCCEEEE
Confidence 45566667889999999999998654 34455777887653 22322221 12467788888899999999
Q ss_pred EEeeeeeccc-eeEEEEEEEEE
Q 021528 239 TDLMYNYMSR-DVTSSVGYDYI 259 (311)
Q Consensus 239 ~el~~~~~~~-~~~~~vG~~y~ 259 (311)
....|+.... .....+|.+|+
T Consensus 699 g~~~ydl~~~~~~e~~~GleY~ 720 (798)
T PRK04423 699 GRYYYSLLDKKPLEIIGGVQWD 720 (798)
T ss_pred EEEEEeCcCCcchhhhcCcEEc
Confidence 9999988743 34567788886
No 36
>PRK12580 outer membrane protease; Reviewed
Probab=50.34 E-value=2.2e+02 Score=26.69 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=45.9
Q ss_pred ccceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEecceEEEEEEcCCceEEeeeeecccCceEEEEEEEE
Q 021528 219 STGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEI 295 (311)
Q Consensus 219 ~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~~~s~vk~~ids~g~v~~~~e~~l~p~~~l~lS~~l 295 (311)
+.-.+.+.++.-..|+..+|+..-|+... -+=..-|..|......-.++ =.+|..+..|+||+..+ =+.|.+..
T Consensus 130 nefDln~k~W~l~~~~y~lgv~aGyQ~t~-~sw~a~GGsy~Y~~~~~~g~-fPd~~~gIgYkQrf~mp-YiGL~g~Y 203 (312)
T PRK12580 130 NEYDLNVKGWLLQDENYKAGITAGYQETR-FSWTATGGSYSYNNGAYTGN-FPKGVRVIGYNQRFSMP-YIGLAGQY 203 (312)
T ss_pred hhcceecceeeecCCCeeEeeeecceeee-eeEEecccceEecCCCceee-cCCCccceeeeEecccc-eeeeeeEE
Confidence 34456777888888888888888776532 22234455555543222233 24889999999999865 24444443
No 37
>PF12094 DUF3570: Protein of unknown function (DUF3570); InterPro: IPR021953 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 396 to 444 amino acids in length.
Probab=48.69 E-value=2.1e+02 Score=28.08 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=61.1
Q ss_pred eEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCCeEEEEEEcccc--eEEEEEEEEccCCeEEEEEeeeeeccc
Q 021528 171 FGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVASTG--MVALSYVQKLSEKVSLATDLMYNYMSR 248 (311)
Q Consensus 171 ~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~~~~~~~~~~g--~~~~sY~~kvs~~l~lg~el~~~~~~~ 248 (311)
+.+++.|-|++++.+.+.+.+.... +|-.+++...--+...+ .+.+.+-++...|...++-+.++.--.
T Consensus 216 ~~lG~TQVl~k~~~~~~n~~~~~~~---------GyLsdPYk~v~~~D~~g~~~~~~~~E~rPd~R~k~~~~~r~~~~l~ 286 (420)
T PF12094_consen 216 LSLGLTQVLNKNLLVQFNYDYSYQE---------GYLSDPYKRVYFVDGNGDAQLALDYENRPDTRNKQALGLRLNYFLP 286 (420)
T ss_pred eeeeeEEEECcccEEEEEEEEEEcc---------eecCCCcEEEEEecCCCcccceechhcCCcchhccceeeeeeeccc
Confidence 3467888888888777666654432 44555554222222222 333334455555555555555544433
Q ss_pred eeEEEEEEEEEecceEEEEEEcCCceEEeeeeecccCceEEEEE
Q 021528 249 DVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILS 292 (311)
Q Consensus 249 ~~~~~vG~~y~~~~s~vk~~ids~g~v~~~~e~~l~p~~~l~lS 292 (311)
+..+.+-|||-.|+|-|+ .-.+.+-|.++|.+.++|...
T Consensus 287 ~~~~~~~YRyy~DdWGI~-----SHT~~~~~~~~l~~~~~l~P~ 325 (420)
T PF12094_consen 287 DAAVRFSYRYYTDDWGIN-----SHTFELEYPQKLSDRWTLEPF 325 (420)
T ss_pred ccccceeeEEeecccCce-----eeeeeeEeEEecCCceEeeeE
Confidence 444499999988888665 235566666666665555443
No 38
>PF05275 CopB: Copper resistance protein B precursor (CopB); InterPro: IPR007939 This family consists of several bacterial copper resistance proteins. Copper is essential and serves as a cofactor for more than 30 enzymes yet a surplus of copper is toxic and leads to free radical formation and oxidation of biomolecules. Therefore, copper homeostasis is a key requisite for every organism. CopB serves to extrude copper when it approaches toxic levels [] and has been shown to act as an ATPase (3.6.1.3 from EC).; GO: 0005507 copper ion binding, 0006878 cellular copper ion homeostasis, 0009279 cell outer membrane
Probab=47.89 E-value=2e+02 Score=25.44 Aligned_cols=83 Identities=13% Similarity=0.078 Sum_probs=56.4
Q ss_pred ceEEEEEEEEccC--CeEEEEEeeeeeccceeEEEEEEEEEecce---EEEEEEcCCceEEe----eeeecccCceEEEE
Q 021528 221 GMVALSYVQKLSE--KVSLATDLMYNYMSRDVTSSVGYDYILRQC---RLRGKIDSNGCAAA----YLEERLNMGLNFIL 291 (311)
Q Consensus 221 g~~~~sY~~kvs~--~l~lg~el~~~~~~~~~~~~vG~~y~~~~s---~vk~~ids~g~v~~----~~e~~l~p~~~l~l 291 (311)
..+.+-|.|-|+| .+++|+...+.......-+.+|.+-..|-. ...+-|+.+|.+++ .|+-.|.+.+-|.=
T Consensus 55 ~e~q~lysr~is~fwd~q~GvR~d~~~~~~r~~~~iG~qGLAPY~FE~da~lyvs~~G~~~~r~e~eydlllTqrLiLqP 134 (210)
T PF05275_consen 55 AEIQALYSRAISPFWDVQAGVRYDFRPGPDRTWAVIGVQGLAPYWFEVDATLYVSEDGDVAARLEAEYDLLLTQRLILQP 134 (210)
T ss_pred heeeeecccccCccceEEEEeEeecCCCCCceEEEEEEEEcCcceEeeeeeEEEcCCCcEEEEEEEEeeeeeeeeEEEEE
Confidence 4577889999999 556666666555545677899988777643 36677888886654 55666666666776
Q ss_pred EEEEecC-CCCee
Q 021528 292 SAEIDHR-KKDYK 303 (311)
Q Consensus 292 S~~ld~~-~~~~k 303 (311)
..++|.. +++.+
T Consensus 135 ~~E~~~~~~d~~~ 147 (210)
T PF05275_consen 135 RLEANAAAQDDPE 147 (210)
T ss_pred eEEEEEEeccchh
Confidence 7777743 44433
No 39
>PF04357 DUF490: Family of unknown function (DUF490); InterPro: IPR007452 This family contains several proteins of uncharacterised function.
Probab=47.62 E-value=1.5e+02 Score=27.89 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=41.0
Q ss_pred ceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEe-cceEEEEEEcCC--ce-EEeeeeec
Q 021528 221 GMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYIL-RQCRLRGKIDSN--GC-AAAYLEER 282 (311)
Q Consensus 221 g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~-~~s~vk~~ids~--g~-v~~~~e~~ 282 (311)
....+..-.+++|++.+..+..+....... ..+..+|.+ ++..+++++++. +. ++..|+.+
T Consensus 314 ~~~~~~~gk~l~~~l~i~~~~~~~~~~~~~-~~~~l~y~l~~~~~l~~~~~~~~~~~g~~l~y~~~ 378 (379)
T PF04357_consen 314 SDTSVTVGKYLSDRLYISYQFGVDLGGSQT-GEFSLEYRLNPNLSLRGSSDSGNTSQGVDLIYRKD 378 (379)
T ss_pred CceEEEEEEecCCCEEEEEEEeecCCCCce-EEEEEEEEEcCCEEEEEEEEcCCCceEEEEEEEEE
Confidence 345566677789999988886665433222 466677777 467899999665 65 66666654
No 40
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=46.47 E-value=3.8e+02 Score=28.28 Aligned_cols=132 Identities=10% Similarity=-0.079 Sum_probs=78.4
Q ss_pred CCeEEEEEEcCCCeeEEEEEEeecCceeeeeEEEEeccC------CceeeEEEEEEeCCCeEEEEEEcc-----cc--eE
Q 021528 157 KDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQH------RKSGIGYAARYENDKMVATGQVAS-----TG--MV 223 (311)
Q Consensus 157 ~d~t~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~------~~t~~~~~~rY~~~~~~~~~~~~~-----~g--~~ 223 (311)
.|++....+.+|.+ .+++.+-+...|.... ...-+.+|+.|...+..+.+.+.. .+ -.
T Consensus 496 ~~~~~~~~~ys~~~---------~~~~r~f~~~~~~~~~~~~~~~~~~~~g~G~e~~~~~~~~e~~~~~~~~~~~~~~g~ 566 (765)
T PRK10049 496 HDVDITTILYSPPL---------ADNWRGFAGFGYADGQFSEGKGIVRDWLAGVEWRSRDIWLEAELSERVFGHEHKPGA 566 (765)
T ss_pred CcCcceeEEecCcc---------CCCeeEEeeecceeccCCCCceeEEEEeeeeEEEecceeEEEEeeccccCCCCCccc
Confidence 45555555544433 4677777766665432 135578999998888877776531 11 24
Q ss_pred EEEEEEEccCCeEEEEEeeeeec------------cceeEEEEEEEEEec-ceEEEEEE--cCC----ceEEeeeeeccc
Q 021528 224 ALSYVQKLSEKVSLATDLMYNYM------------SRDVTSSVGYDYILR-QCRLRGKI--DSN----GCAAAYLEERLN 284 (311)
Q Consensus 224 ~~sY~~kvs~~l~lg~el~~~~~------------~~~~~~~vG~~y~~~-~s~vk~~i--ds~----g~v~~~~e~~l~ 284 (311)
.++..+.+||.+.++.++..+.. .+...+.+.|+++=. ...+...+ =|+ ..+++..+++|-
T Consensus 567 ~~~~~~~~nd~w~~~~~~~~~~~~~plra~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~fsD~N~r~~~~~~~~~~~~ 646 (765)
T PRK10049 567 RLSGWYDFNDNWRIGGSLERLSHRTPLRALKNGVTANGGQGYVRWYQNERREYGVSWAFSDFSDGNRRQEYSLSGQERLW 646 (765)
T ss_pred EEEeeeccCCCeeeeceeecCCCCCCHHHHHcCCccccceEEEEEeEcceEEEEeeeeeecccCCchhhheeceeeEEee
Confidence 58899999999999999998543 223344444444321 12222211 223 347788888874
Q ss_pred --CceEEEEEEEEec
Q 021528 285 --MGLNFILSAEIDH 297 (311)
Q Consensus 285 --p~~~l~lS~~ld~ 297 (311)
|..++.++..+++
T Consensus 647 ~~p~~~~~~~~~~~~ 661 (765)
T PRK10049 647 SSPYLIVDFLPSLYY 661 (765)
T ss_pred cCCeEEEeeceEEee
Confidence 5566555555554
No 41
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=44.98 E-value=2.8e+02 Score=29.22 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=18.1
Q ss_pred eEEEEEEE--EccCCeEEEEEeeeeec
Q 021528 222 MVALSYVQ--KLSEKVSLATDLMYNYM 246 (311)
Q Consensus 222 ~~~~sY~~--kvs~~l~lg~el~~~~~ 246 (311)
+..++|=| ++++.+.+|..+.|+.+
T Consensus 719 ~~~~~y~~~~~~~~~~~~~~~~~~~~~ 745 (765)
T PRK10049 719 ITQLGYGQRISWNDVIDAGATLRWDKR 745 (765)
T ss_pred ceeeeeeeEEEEccceeeeeeeeecCC
Confidence 34466644 45789999999998765
No 42
>PRK03761 LPS assembly outer membrane complex protein LptD; Provisional
Probab=44.70 E-value=3.6e+02 Score=28.61 Aligned_cols=86 Identities=12% Similarity=0.145 Sum_probs=56.4
Q ss_pred EEEEeecCceeeeeEEEEeccCC-ceeeEEEEEEeCCCe-EEEEEE------------c----------ccceEEEEEEE
Q 021528 174 SYIQNVSPHLSLGGEVFWAGQHR-KSGIGYAARYENDKM-VATGQV------------A----------STGMVALSYVQ 229 (311)
Q Consensus 174 s~lq~vt~~l~lG~e~~~~~~~~-~t~~~~~~rY~~~~~-~~~~~~------------~----------~~g~~~~sY~~ 229 (311)
..--++.+.|.+.+++.|+.... ....++.++|+.+.. .+.+.. . ....+.++..-
T Consensus 606 ~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~l~y~~~~~~~~~~~Yry~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 685 (778)
T PRK03761 606 DTYWRISDRWGLRGGIQYDTRLDSVALANSSLEYRRDEDRLIQLNYRYASPEYIQATLPSYYSAEIYQQGISQVGAVASW 685 (778)
T ss_pred EeEEEecCCEEEeeeEEECCCCChhheEEEEEEEeCCCCcEEEeEeEEecchhhhcccccccccccccCCcceeeEEEEE
Confidence 33445678889999999987543 456677777776654 222111 0 01356677778
Q ss_pred EccCCeEEEEEeeeeeccc-eeEEEEEEEEE
Q 021528 230 KLSEKVSLATDLMYNYMSR-DVTSSVGYDYI 259 (311)
Q Consensus 230 kvs~~l~lg~el~~~~~~~-~~~~~vG~~y~ 259 (311)
.+++++.+.....|+.... .....+|.+|.
T Consensus 686 ~l~~~w~~~g~~~ydl~~~~~~~~~~Gl~Y~ 716 (778)
T PRK03761 686 PIADRWSIVGAYYYDTKANKPAEQLLGLQYN 716 (778)
T ss_pred EecCcEEEEEEEEeeCcCChhhhhhcCeeec
Confidence 8889999999888887643 33457777775
No 43
>COG4571 OmpT Outer membrane protease [Cell envelope biogenesis, outer membrane]
Probab=41.15 E-value=2.9e+02 Score=25.49 Aligned_cols=124 Identities=18% Similarity=0.241 Sum_probs=61.3
Q ss_pred EECCCccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEE-----------EEEcCCCee--EEEEEEe
Q 021528 112 RVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQ-----------FQFGNGALF--GASYIQN 178 (311)
Q Consensus 112 ~~d~dg~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~-----------lk~~n~~~~--~~s~lq~ 178 (311)
++++.-.|.+.+..++.+.++++...++.-.++ ...+.+-||..+..+-. |...+..-+ ..-++|
T Consensus 68 k~~Naaiikgdi~wd~~p~~ti~a~GwttlasG-~G~M~DyDWm~s~qt~tWSdrS~H~dT~Lnyane~dlnlk~wlL~- 145 (314)
T COG4571 68 KINNAAIIKGDISWDLYPFWTIKARGWTTLASG-SGNMVDYDWMSSFQTGTWSDRSRHPDTNLNYANEYDLNLKGWLLQ- 145 (314)
T ss_pred eccccceeeeeeccccCCCcEEeeceeEEeecC-CccceecccCCccCCCcccccccCCCCcccchheeeeeeceeeec-
Confidence 334445667788888889999988877643211 23444555543332211 111111001 112222
Q ss_pred ecCceeeeeEEEEeccCCceeeEEEEEEeCCCeEEEEEEc--ccceEEEEEEEEccCCeEEEEEeee
Q 021528 179 VSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVA--STGMVALSYVQKLSEKVSLATDLMY 243 (311)
Q Consensus 179 vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~~~~~~~~--~~g~~~~sY~~kvs~~l~lg~el~~ 243 (311)
.|...+|..+.|+.. +.+=..+|+.|.-+. -+.+. +.|.-.++|.||+. =.-+|+.-+|
T Consensus 146 -~~ny~~gv~~GyqeT-~~swTA~GGsy~Y~~---G~~ig~fP~g~r~IgY~Qrf~-m~yiGlag~Y 206 (314)
T COG4571 146 -DPNYRLGVTAGYQET-RVSWTAYGGSYIYSN---GFYIGNFPNGVRAIGYKQRFK-MPYIGLAGSY 206 (314)
T ss_pred -CCceeecccccceee-eeEEEEcccceEecC---CcccccCCCCceeeeeccccc-ceeeeccceE
Confidence 355566666666541 122223444454433 11333 36788899999995 3334444444
No 44
>PF04338 DUF481: Protein of unknown function, DUF481; InterPro: IPR007433 This family includes several proteins of uncharacterised function.
Probab=40.55 E-value=2.2e+02 Score=23.97 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=14.2
Q ss_pred eEEEEEEEEccCCeEEEEEeeeee
Q 021528 222 MVALSYVQKLSEKVSLATDLMYNY 245 (311)
Q Consensus 222 ~~~~sY~~kvs~~l~lg~el~~~~ 245 (311)
.+.+.|..++++++.+-.++.+.+
T Consensus 130 ~~~~~~~~~~~~~~~l~~~~~~~~ 153 (210)
T PF04338_consen 130 RFGLDYRWKISDNLSLTQTLSYQP 153 (210)
T ss_pred EEEEEEEEEcCCCEEEEEEEEEEE
Confidence 445666666666666666655543
No 45
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=39.17 E-value=3.3e+02 Score=25.58 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=12.6
Q ss_pred eEEEEEEEEccCCeEEEEEeeee
Q 021528 222 MVALSYVQKLSEKVSLATDLMYN 244 (311)
Q Consensus 222 ~~~~sY~~kvs~~l~lg~el~~~ 244 (311)
.+.++..+++++.+.+.+...|.
T Consensus 335 ~~~~~~~y~~~r~~~~~~~y~~~ 357 (381)
T PF10082_consen 335 SAGLGLTYRLNRWLSLSAGYRYE 357 (381)
T ss_pred EEEEEEEEEecCCEEEEEEEEEE
Confidence 34455555566666665555553
No 46
>PF11751 DUF3308: Protein of unknown function (DUF3308); InterPro: IPR019861 This entry describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Cytophaga johnsonae (Flavobacterium johnsoniae), that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss of the rapid gliding phenotype.
Probab=38.74 E-value=2.9e+02 Score=24.81 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=24.9
Q ss_pred eEEEEEeeeeeccceeEEEEEEEEEecce---EEEEEEcCCceEEeeeeecc
Q 021528 235 VSLATDLMYNYMSRDVTSSVGYDYILRQC---RLRGKIDSNGCAAAYLEERL 283 (311)
Q Consensus 235 l~lg~el~~~~~~~~~~~~vG~~y~~~~s---~vk~~ids~g~v~~~~e~~l 283 (311)
+++++.+.++. .+.+|.-|...++ .+-.++.....++..|+..+
T Consensus 211 ~~~~~~~~~~~-----~~~~G~~yr~~~a~~~~~g~~~~~~~~igysYd~~~ 257 (274)
T PF11751_consen 211 LDIGAMFRYND-----RFWAGLGYRSNDAFSFMLGFNLKNNFRIGYSYDFNL 257 (274)
T ss_pred EEEEEEEEEee-----eEEEEEEEeCCCcEEEEEEEEECCCEEEEEEEeeec
Confidence 66666666643 4555555554433 24555555666666665444
No 47
>PF04575 DUF560: Protein of unknown function (DUF560); InterPro: IPR007655 This is a family of hypothetical bacterial proteins.
Probab=38.52 E-value=3e+02 Score=24.81 Aligned_cols=74 Identities=24% Similarity=0.190 Sum_probs=37.9
Q ss_pred EEEEEEEEccCCeEEEEEeeeeec---------cceeEEEEEEEEEec-ceEEEEEEc-----------C--CceEEeee
Q 021528 223 VALSYVQKLSEKVSLATDLMYNYM---------SRDVTSSVGYDYILR-QCRLRGKID-----------S--NGCAAAYL 279 (311)
Q Consensus 223 ~~~sY~~kvs~~l~lg~el~~~~~---------~~~~~~~vG~~y~~~-~s~vk~~id-----------s--~g~v~~~~ 279 (311)
+.+++-+.+++++.+.+.+++... .....+.+++.|.+. +..+-+.+| + ..-+.+.+
T Consensus 120 ~~~~~~~~l~~~~~~~~~~~~~~~~y~~~~~~dg~~~~~~~t~~~~~~~~~~~~~g~~~~~~~~~~~~~sy~~~g~r~g~ 199 (285)
T PF04575_consen 120 ASLSWSYWLSPRWQLSGSLEYKRKRYRQRSDRDGDRYSASLTLIYAPNPRWYLFGGLDYGREDARDKSYSYDRYGLRLGW 199 (285)
T ss_pred EEEEEEEEcCCCeEEEEEeeeehhhcCccccCCccEEEEEEEEEEEcCCCcEEEEeEEEeeeccccccccceeeeEEEEE
Confidence 446777777777777777766432 112233444444332 122222221 1 23355666
Q ss_pred eecccCceEEEEEEEEe
Q 021528 280 EERLNMGLNFILSAEID 296 (311)
Q Consensus 280 e~~l~p~~~l~lS~~ld 296 (311)
.+++..++.+.+++.+-
T Consensus 200 ~~~~~~g~~~~~~~~~~ 216 (285)
T PF04575_consen 200 SQEWPGGLSTRLSASYR 216 (285)
T ss_pred EEEecCCeEEEEEEEEE
Confidence 66776666666665553
No 48
>PF07239 OpcA: Outer membrane protein OpcA; InterPro: IPR009876 This entry represents several Neisseria species-specific OpcA-type outer membrane adhesion proteins. OpcA (formerly called 5C) was isolated from Neisseria meningitidis, causative agent of meningococcal meningitis and septicemia. An outer membrane protein embedded in the lipid bilayer, OpcA was shown to play an important role in meningococcal adhesion and invasion of both epithelial and endothelial cells, mediating attachment to host cells by binding proteoglycan cell-surface receptors []. OpcA forms a 10-stranded beta-barrel with five highly mobile extracellular loops that protrude above the surface of the membrane []. These extracellular loops combine to form a crevice in the external surface that is lined by positively charged residues, which is predicted to be a binding site for proteoglycan polysaccharides involved in pathogenesis. Conformational changes in the extracellular loops modulate the surface of OpcA, which could affect the proteoglycan binding site []. These conformational changes could also lead to pore opening.; PDB: 1K24_A 2VDF_A.
Probab=38.18 E-value=1.7e+02 Score=25.70 Aligned_cols=21 Identities=33% Similarity=0.699 Sum_probs=10.2
Q ss_pred EEEEEecCCCCeeeeEEEEeC
Q 021528 291 LSAEIDHRKKDYKFGFGLTVG 311 (311)
Q Consensus 291 lS~~ld~~~~~~kfG~gl~~G 311 (311)
+|..+|.+.+.+-||+|+++|
T Consensus 177 as~Din~kt~Gw~vG~G~NVG 197 (244)
T PF07239_consen 177 ASADINAKTNGWSVGLGANVG 197 (244)
T ss_dssp TSS-EEEE--EEEEEEEEEEE
T ss_pred hhhhhhhhccCceeeeccccc
Confidence 344455555556666666654
No 49
>PRK14574 hmsH outer membrane protein; Provisional
Probab=34.52 E-value=6.1e+02 Score=27.25 Aligned_cols=132 Identities=11% Similarity=0.046 Sum_probs=74.1
Q ss_pred CCeEEEEEEcCCCeeEEEEEEeecCceeeeeEEEEeccC-----C-ceeeEEEEEEeCCCeEEEEEEcc-----cce--E
Q 021528 157 KDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQH-----R-KSGIGYAARYENDKMVATGQVAS-----TGM--V 223 (311)
Q Consensus 157 ~d~t~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~-----~-~t~~~~~~rY~~~~~~~~~~~~~-----~g~--~ 223 (311)
.|+++...+..|.+ .+++.+-+...+.... . ...+.+|+.|+..+..+.+.+.+ .+. .
T Consensus 553 ~d~~~~~~lySpp~---------~d~~R~F~~~~~~~~~f~~~~~~~r~~~~G~e~~~r~~~~~~e~~~~~~g~g~k~g~ 623 (822)
T PRK14574 553 KDYGVETLLYSPPI---------AENWRVFGGGSYNNGQFEEGTGISRILRLGGEWTSRDHWVEGEISNQNYGNGNKVGA 623 (822)
T ss_pred CccceeeEEecCcc---------CCCeeEEEEecceecccCCCCceeeeeeccceEEecCceEEEEeehhhcCCCCCcCc
Confidence 34555555544433 4566666666665332 1 23456888888888877775542 112 4
Q ss_pred EEEEEEEccCCeEEEEEeeeeec------------cceeEEEEEEEEEec-ceEEE--EEEcCCc----eEEeeeeeccc
Q 021528 224 ALSYVQKLSEKVSLATDLMYNYM------------SRDVTSSVGYDYILR-QCRLR--GKIDSNG----CAAAYLEERLN 284 (311)
Q Consensus 224 ~~sY~~kvs~~l~lg~el~~~~~------------~~~~~~~vG~~y~~~-~s~vk--~~ids~g----~v~~~~e~~l~ 284 (311)
.++.++.+||.+.++.++..+.. .+...+.+.|+++=. ...+. ..==|+| .+++..+++|-
T Consensus 624 r~~~~~~~nD~W~~~~~~~~~~~~tPlrA~~~gv~~~~~~~~~~yr~~e~r~~~~~~~~~~fsDgN~R~~~~~~~~~rl~ 703 (822)
T PRK14574 624 RLSTWYDLNDHWRVGGQVERLAKDTPLRALKNKVTANSASAYVFWKADDKRDAELSVTPSRFSDGNNRWEYEFNGRQRIW 703 (822)
T ss_pred eEEEEecCCCceeeeeeeecCCCCCCHHHHHcCCcceecceEEEEEEccceEEEeeeeecccCCCchhhhhhcceeEEee
Confidence 57888999999999999998543 223334444444321 11122 1112333 36777777763
Q ss_pred --CceEEEEEEEEec
Q 021528 285 --MGLNFILSAEIDH 297 (311)
Q Consensus 285 --p~~~l~lS~~ld~ 297 (311)
|..++.+...+++
T Consensus 704 ~~p~~~~d~~~~~~~ 718 (822)
T PRK14574 704 TGPYLTADFNLGLAA 718 (822)
T ss_pred cCCeEEEecceEEee
Confidence 5555554444443
No 50
>PRK09980 ompL outer membrane porin L; Provisional
Probab=34.05 E-value=3.5e+02 Score=24.25 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=18.5
Q ss_pred ccceEEEEEE-EEccCCeEEEEEeeeeec
Q 021528 219 STGMVALSYV-QKLSEKVSLATDLMYNYM 246 (311)
Q Consensus 219 ~~g~~~~sY~-~kvs~~l~lg~el~~~~~ 246 (311)
+..++.++|. .|+++++++--.+.++..
T Consensus 70 ~~~E~~~sY~~~k~~d~~tl~PG~~~~s~ 98 (230)
T PRK09980 70 GYNEIEGWYPLFKPTDKLTIQPGGLINDK 98 (230)
T ss_pred cceEEEEEEEeEecCCCEEEecceEEEec
Confidence 3456777885 488887777666655544
No 51
>PF11924 DUF3442: Protein of unknown function (DUF3442); InterPro: IPR024519 This domain is found in uncharacterised proteins, as well as intimin and invasin proteins. Intimin is believed to mediate adherence and it is necessary for the production of attaching and effacing lesions on tissue culture cells []. Invasin is a protein that allows enteric bacteria to penetrate cultured mammalian cells []. The entry of invasin in the cell is mediated by binding several beta-1 chain integrins [].; PDB: 4E1T_A 4E1S_A.
Probab=34.00 E-value=3.7e+02 Score=24.59 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=30.3
Q ss_pred ecCceeeeeEEEEeccC--CceeeEEEEEEeCCCeEEEEE
Q 021528 179 VSPHLSLGGEVFWAGQH--RKSGIGYAARYENDKMVATGQ 216 (311)
Q Consensus 179 vt~~l~lG~e~~~~~~~--~~t~~~~~~rY~~~~~~~~~~ 216 (311)
+.+.+-+|+.+.|+... ....+++|+.|-.+.|.+++.
T Consensus 104 ~~~~~~~G~N~FyD~~~~~~~~R~~~G~E~~~~~~~l~~N 143 (280)
T PF11924_consen 104 LNDNWMLGYNAFYDYDFSRNHQRLGLGAEYWSDYLDLRAN 143 (280)
T ss_dssp EETTEEEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEE
T ss_pred cCCCeEEEeEEEEecCCCCCcceeeeeeEeEeccceeEee
Confidence 35888899999999643 357799999998888877764
No 52
>PF11886 DUF3406: Domain of unknown function (DUF3406); InterPro: IPR024283 This C-terminal domain is found in chloroplast protein import component Toc86/159 [] and homologue Toc90 [], and in some uncharacterised proteins.
Probab=33.97 E-value=3.8e+02 Score=24.63 Aligned_cols=114 Identities=14% Similarity=0.140 Sum_probs=58.4
Q ss_pred eeeEEEEEEeCCeEEEEEEcCCCeeEEEEEEeecCceeeeeEEEEeccCCce--eeEEEEEEeCCCeEEEEEEcccceEE
Q 021528 147 HGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKS--GIGYAARYENDKMVATGQVASTGMVA 224 (311)
Q Consensus 147 ~~~~~~dy~g~d~t~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t--~~~~~~rY~~~~~~~~~~~~~~g~~~ 224 (311)
..-+.+-..|+.+...+|+.+--. |.+|+.+=+.+.--...+.+ +.++-++.+..|+-+. .+...++
T Consensus 134 ~~G~S~T~lG~~~~~G~KlED~i~--------vgkrlklv~s~G~m~~~gd~AYGg~~Ea~lr~kDyPi~---~~~~tlg 202 (273)
T PF11886_consen 134 TAGLSVTFLGDNVATGLKLEDQIS--------VGKRLKLVMSAGAMRGQGDVAYGGNLEATLRGKDYPIG---QDQSTLG 202 (273)
T ss_pred cceeEEEEecCeEEEEEeeeeEEE--------ecCcEEEEEEccEeeecCceeeceeEEEEeecCCCCCC---Ccceeee
Confidence 334667777888888888854322 34555554444333333322 2234444555554321 1123444
Q ss_pred EEEEEEccCCeEEEEEeeeeec-cceeEEEEEEEEEecce-EEEEEEcCC
Q 021528 225 LSYVQKLSEKVSLATDLMYNYM-SRDVTSSVGYDYILRQC-RLRGKIDSN 272 (311)
Q Consensus 225 ~sY~~kvs~~l~lg~el~~~~~-~~~~~~~vG~~y~~~~s-~vk~~ids~ 272 (311)
+|.. +....+.+|+.++-+++ .+.+.+.+=+.++-+.+ +|..|++|.
T Consensus 203 lS~m-~w~~d~alg~NlqSqf~~gr~skm~v~anlNnk~~Gqisik~sSS 251 (273)
T PF11886_consen 203 LSLM-KWRGDLALGANLQSQFSVGRGSKMAVRANLNNKGTGQISIKTSSS 251 (273)
T ss_pred eEeE-ecccCeEEeecceEeeecCCCceEEEEecccCCccceEEEEecch
Confidence 5543 33467888888887766 44555544444443322 444444443
No 53
>PRK10959 outer membrane protein W; Provisional
Probab=33.27 E-value=3.2e+02 Score=23.65 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=20.5
Q ss_pred EECCCccEEEEEEeeccccceeEEEEE
Q 021528 112 RVLTDGRLNARVKCDLSDNLSLKANAQ 138 (311)
Q Consensus 112 ~~d~dg~L~~~~~~~~~~~l~~k~~~~ 138 (311)
+++++-.+...+.|.+++++.+++...
T Consensus 53 ~~~~~~~~~l~~gY~~t~~~~~E~~~~ 79 (212)
T PRK10959 53 SVSNNTQLGLTFGYMATDNIGVELLAA 79 (212)
T ss_pred EEcCCcceeeEEEEEecCCceEEEEec
Confidence 556666677888899999998877554
No 54
>PF11886 DUF3406: Domain of unknown function (DUF3406); InterPro: IPR024283 This C-terminal domain is found in chloroplast protein import component Toc86/159 [] and homologue Toc90 [], and in some uncharacterised proteins.
Probab=32.67 E-value=4e+02 Score=24.49 Aligned_cols=169 Identities=15% Similarity=0.205 Sum_probs=78.8
Q ss_pred EEECCCccEE---EEEEeeccccceeEEEEEecCCCCcceeeEE--EEEEeCC---eEEEEEEcCCCeeEEEEEEeecCc
Q 021528 111 GRVLTDGRLN---ARVKCDLSDNLSLKANAQLTNEPHMSHGMIN--FDYKGKD---YRTQFQFGNGALFGASYIQNVSPH 182 (311)
Q Consensus 111 ~~~d~dg~L~---~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~--~dy~g~d---~t~~lk~~n~~~~~~s~lq~vt~~ 182 (311)
..||+|-... .+-...+.+.+-..+..|+..+.+....+++ +.|+... +++.+.+ |++.+.
T Consensus 46 ~GWDHD~G~DGvn~E~~~~l~~~~pas~~~Qv~KDKkd~~i~~e~s~s~kh~~~~s~~~G~Di-----------Qt~gkd 114 (273)
T PF11886_consen 46 HGWDHDCGFDGVNLERSLVLKKKIPASVSGQVTKDKKDFNIQLESSASYKHGEGGSSMAGFDI-----------QTVGKD 114 (273)
T ss_pred CCcccccCccceehhheehhhcCCceEEEEEEEechhheeEEEeeEEEEEcCCCceEEEEEee-----------eecCce
Confidence 3699985443 3334456677878888888765554444544 3344222 2333333 222222
Q ss_pred e--eeeeEEEEeccC-CceeeEEEEEEeCCCeEEEEEEcccc------eEEEEEEE-EccCCeEEEEEeeeeecc-----
Q 021528 183 L--SLGGEVFWAGQH-RKSGIGYAARYENDKMVATGQVASTG------MVALSYVQ-KLSEKVSLATDLMYNYMS----- 247 (311)
Q Consensus 183 l--~lG~e~~~~~~~-~~t~~~~~~rY~~~~~~~~~~~~~~g------~~~~sY~~-kvs~~l~lg~el~~~~~~----- 247 (311)
| .+-+|.-|..-. +.+...+.+-.-++.+.+-+++.|.= .+.++-=+ .-..++..|+.++...+.
T Consensus 115 LaYt~rgeTkfkn~k~Nkt~~G~S~T~lG~~~~~G~KlED~i~vgkrlklv~s~G~m~~~gd~AYGg~~Ea~lr~kDyPi 194 (273)
T PF11886_consen 115 LAYTLRGETKFKNFKKNKTTAGLSVTFLGDNVATGLKLEDQISVGKRLKLVMSAGAMRGQGDVAYGGNLEATLRGKDYPI 194 (273)
T ss_pred eEEEEcccceeeccccccccceeEEEEecCeEEEEEeeeeEEEecCcEEEEEEccEeeecCceeeceeEEEEeecCCCCC
Confidence 2 244455444322 22333333333344443333333210 01010000 011355556666665542
Q ss_pred ceeEEEEEEEEEecceEEEEEEcCCceEEeeeeecccC--ceEEEEEEEEecC
Q 021528 248 RDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNM--GLNFILSAEIDHR 298 (311)
Q Consensus 248 ~~~~~~vG~~y~~~~s~vk~~ids~g~v~~~~e~~l~p--~~~l~lS~~ld~~ 298 (311)
++...++|...- +...+..+++-++-+++. +.++.+++.+|-+
T Consensus 195 ~~~~~tlglS~m--------~w~~d~alg~NlqSqf~~gr~skm~v~anlNnk 239 (273)
T PF11886_consen 195 GQDQSTLGLSLM--------KWRGDLALGANLQSQFSVGRGSKMAVRANLNNK 239 (273)
T ss_pred CCcceeeeeEeE--------ecccCeEEeecceEeeecCCCceEEEEecccCC
Confidence 233344443331 122455666666666665 4677777777743
No 55
>PF13557 Phenol_MetA_deg: Putative MetA-pathway of phenol degradation
Probab=32.59 E-value=3.3e+02 Score=23.59 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=10.7
Q ss_pred EEEEeecCceeeeeEEEEec
Q 021528 174 SYIQNVSPHLSLGGEVFWAG 193 (311)
Q Consensus 174 s~lq~vt~~l~lG~e~~~~~ 193 (311)
.|.+...++|.+.+++.|..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~ 151 (248)
T PF13557_consen 132 TYYFDLGGGWTLSANLGYNI 151 (248)
T ss_pred EEEeccCCCEEEEEEEEEEE
Confidence 33333345666666666654
No 56
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=30.68 E-value=5.4e+02 Score=26.74 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=47.3
Q ss_pred EEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCCeEEEEEEcc-----cceEEEEEEEEccCCeEEEEEeeeeec
Q 021528 172 GASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVAS-----TGMVALSYVQKLSEKVSLATDLMYNYM 246 (311)
Q Consensus 172 ~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~~~~~~~~~-----~g~~~~sY~~kvs~~l~lg~el~~~~~ 246 (311)
.+.+.-+++++|.|.+..-|....+.+....-..|..+..+.....+. ...+.+.--+++.+++.+.+..+|...
T Consensus 286 ~l~~tsr~~~~l~l~a~y~Y~DrDNkt~~~~~~~~~~d~~~g~~~~N~~~d~tk~~~~~~a~YRl~~~~~l~~gy~~e~~ 365 (637)
T PF11854_consen 286 NLKLTSRPTPDLRLTASYRYSDRDNKTPVWEYPQYSIDSVTGATARNTPYDYTKQNAKLDADYRLARGYRLEAGYEYEDW 365 (637)
T ss_pred eEEEEeeEcCCcEEEEEEEEeeccCCCchhhccceeeccccccccccCcccccceeeeEEeEEEecCCcEEEEeeeEeee
Confidence 456666778888888888776543322222222232222221111111 123444445566666555555555322
Q ss_pred ---------cceeEEEEEEEEEec-ceEEEEEE
Q 021528 247 ---------SRDVTSSVGYDYILR-QCRLRGKI 269 (311)
Q Consensus 247 ---------~~~~~~~vG~~y~~~-~s~vk~~i 269 (311)
..|..+.+.+++..- .+.++++.
T Consensus 366 dR~~~~re~T~E~~~~~~~~~r~~~~~~l~~~~ 398 (637)
T PF11854_consen 366 DRSYQDRESTDENTLWAKLRYRPSDWLSLRLKY 398 (637)
T ss_pred eccchhccceeeeeEEEEEEeeeccceEEEEEE
Confidence 235555666666553 24444443
No 57
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=29.59 E-value=7e+02 Score=26.42 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=58.0
Q ss_pred eeeEEEEEEeCCeEEEEEEcCCCeeEEEEEEeecCceeeeeEEEEeccCCceee--EEEEEEeCCCeEEEEEEcccceEE
Q 021528 147 HGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGI--GYAARYENDKMVATGQVASTGMVA 224 (311)
Q Consensus 147 ~~~~~~dy~g~d~t~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~--~~~~rY~~~~~~~~~~~~~~g~~~ 224 (311)
..-+++-+.|..+.+.+|+.+--. |.+||.+=+.+.--+..+.+.| ++-++.+..++-+. .+...++
T Consensus 614 ~~g~s~t~lg~~~~~G~K~Ed~~~--------~gkr~~lv~~~G~~~~~gd~Ayg~~~e~~lr~~dyp~~---~~~~tl~ 682 (763)
T TIGR00993 614 AAGLSVTFLGENVSTGVKLEDQIA--------LGKRLVLVGSTGTMRSQGDSAYGANLEVRLREADFPLG---QDQSSLG 682 (763)
T ss_pred cceeEEEEecceeeeeeeehheee--------eccceEEEEecceeeccCcccccceeEEEeecCcCCCC---CCcchhc
Confidence 344677788888888888854322 3456665555544443333322 33344444444332 1233455
Q ss_pred EEEEEEccCCeEEEEEeeeeec-cceeEEEEEEEEEecce-EEEEEEcC
Q 021528 225 LSYVQKLSEKVSLATDLMYNYM-SRDVTSSVGYDYILRQC-RLRGKIDS 271 (311)
Q Consensus 225 ~sY~~kvs~~l~lg~el~~~~~-~~~~~~~vG~~y~~~~s-~vk~~ids 271 (311)
+|.. +....+.+|+.++-+.+ .+.+.+.+-+-.+-+.+ +|..+.+|
T Consensus 683 ~s~~-~w~~~~~l~~n~qsq~~~gr~s~~~~~~~lnn~~~Gqi~ir~~s 730 (763)
T TIGR00993 683 LSLV-DWRGDLALGANIQSQVSIGRSSKLAARAGLNNKGSGQISVRTSS 730 (763)
T ss_pred eeee-ccccceeeeccceeeecccCCceEEEEecccCcccceEEEEecc
Confidence 5543 33457788888877665 34444443333333322 34444444
No 58
>PF05420 BCSC_C: Cellulose synthase operon protein C C-terminus (BCSC_C); InterPro: IPR008410 This entry contains the C-terminal regions of several bacterial cellulose synthase operon C (BCSC) proteins. BCSC is involved in cellulose synthesis although the exact function of this protein is unknown [].; GO: 0030244 cellulose biosynthetic process, 0019867 outer membrane
Probab=29.25 E-value=1.3e+02 Score=28.65 Aligned_cols=39 Identities=28% Similarity=0.242 Sum_probs=30.3
Q ss_pred EEEEEeecCceeeeeEEEEeccCC--ceeeEEEEEEeCCCe
Q 021528 173 ASYIQNVSPHLSLGGEVFWAGQHR--KSGIGYAARYENDKM 211 (311)
Q Consensus 173 ~s~lq~vt~~l~lG~e~~~~~~~~--~t~~~~~~rY~~~~~ 211 (311)
+..-.+|+|+|.+|+++.++.... .....+-+||.-++|
T Consensus 302 a~~eyrls~~~~lGg~~~~~~s~dY~~~~~~lylRY~f~~~ 342 (342)
T PF05420_consen 302 AAVEYRLSPHWFLGGGLDIDNSGDYNPSHAMLYLRYSFDPW 342 (342)
T ss_pred EEEEEEecCCEEEEEEEehhhcCCCCcceEEEEEEEeccCC
Confidence 566667999999999999988653 566778888876654
No 59
>PRK14574 hmsH outer membrane protein; Provisional
Probab=27.16 E-value=8.1e+02 Score=26.35 Aligned_cols=25 Identities=12% Similarity=0.363 Sum_probs=19.0
Q ss_pred eEEEEEEEEc--cCCeEEEEEeeeeec
Q 021528 222 MVALSYVQKL--SEKVSLATDLMYNYM 246 (311)
Q Consensus 222 ~~~~sY~~kv--s~~l~lg~el~~~~~ 246 (311)
+..++|-|+. +++++++..+.|+.+
T Consensus 776 ~~~~~Y~h~w~~~~~~~~~ygi~~~~~ 802 (822)
T PRK14574 776 VTTAGYGQRVQWNDVIDTGVAVVYDKR 802 (822)
T ss_pred cceeeeeeEEEECCceeEEEEEEecCC
Confidence 4557777754 789999999988765
No 60
>PF05420 BCSC_C: Cellulose synthase operon protein C C-terminus (BCSC_C); InterPro: IPR008410 This entry contains the C-terminal regions of several bacterial cellulose synthase operon C (BCSC) proteins. BCSC is involved in cellulose synthesis although the exact function of this protein is unknown [].; GO: 0030244 cellulose biosynthetic process, 0019867 outer membrane
Probab=26.50 E-value=1.6e+02 Score=28.06 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=35.1
Q ss_pred eEEEEEEEEccCCeEEEEEeeeeecc--ceeEEEEEEEEEecc
Q 021528 222 MVALSYVQKLSEKVSLATDLMYNYMS--RDVTSSVGYDYILRQ 262 (311)
Q Consensus 222 ~~~~sY~~kvs~~l~lg~el~~~~~~--~~~~~~vG~~y~~~~ 262 (311)
.+.+.--++|++++.+|.++.++... ++..+.+-.||.|+.
T Consensus 299 ~l~a~~eyrls~~~~lGg~~~~~~s~dY~~~~~~lylRY~f~~ 341 (342)
T PF05420_consen 299 SLRAAVEYRLSPHWFLGGGLDIDNSGDYNPSHAMLYLRYSFDP 341 (342)
T ss_pred EEEEEEEEEecCCEEEEEEEehhhcCCCCcceEEEEEEEeccC
Confidence 56678889999999999999998764 578889999998864
No 61
>TIGR01414 autotrans_barl outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus.
Probab=26.15 E-value=5.8e+02 Score=24.37 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=17.3
Q ss_pred eEEEEEEEEccCCeEEEEEeeeeecc---ceeEEEEEEEEE
Q 021528 222 MVALSYVQKLSEKVSLATDLMYNYMS---RDVTSSVGYDYI 259 (311)
Q Consensus 222 ~~~~sY~~kvs~~l~lg~el~~~~~~---~~~~~~vG~~y~ 259 (311)
.+.++.-.++++++.+.+++.+.... ++..+.+|.+|.
T Consensus 388 ~~~~G~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~g~r~~ 428 (429)
T TIGR01414 388 EYGVGVNAKIKSNLSLYADVDYQKGGKIYTDNQGNLGVRYS 428 (429)
T ss_pred EEeeEEEEEECCCEEEEEEEEEecCCCCccceEEEEEEEEE
Confidence 34444444455555555555554421 233444555444
No 62
>PF13609 Porin_4: Gram-negative porin; PDB: 2FGR_A 2FGQ_X 1E54_A 2POR_A 3POR_A 1PRN_A 6PRN_A 8PRN_A 1H6S_1 3PRN_A ....
Probab=25.04 E-value=5e+02 Score=23.17 Aligned_cols=87 Identities=14% Similarity=0.134 Sum_probs=0.0
Q ss_pred ceeeeeEEEEeccCCceeeEEEEEEeCCCeEEEEEEcc-----------cceEEEEEEEEccCCeEEEEEeeeeec----
Q 021528 182 HLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVAS-----------TGMVALSYVQKLSEKVSLATDLMYNYM---- 246 (311)
Q Consensus 182 ~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~~~~~~~~~-----------~g~~~~sY~~kvs~~l~lg~el~~~~~---- 246 (311)
++.++.+-.=........+.+++.|..+++.+.+.... ...+.++.-+.+ +++.+.++..+...
T Consensus 200 ~~~~~y~~~~~~~~~~~~~~~ga~y~~~~~~l~a~y~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~y~~~~~~~~~ 278 (311)
T PF13609_consen 200 TVAAGYSSADDNGGDNDAWGVGASYNFGGFTLGAEYGQADNDGSGGDSDQDAYYVGAAYTF-GKWTLYAGYGYSDSADGS 278 (311)
T ss_dssp EEEEEEEEEECCETCEEEEEEEEEEECSSEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEE-TTEEEEEEEEEEEE-GCC
T ss_pred EEEeeeecccccchheeeEEeeEEEEECcEEEEEEEEEEEecCccccccceEEEEEEEEEe-CCEEEEEEEEEEEccCCC
Q ss_pred -cceeEEEEEEEEEe-cceEEEEEE
Q 021528 247 -SRDVTSSVGYDYIL-RQCRLRGKI 269 (311)
Q Consensus 247 -~~~~~~~vG~~y~~-~~s~vk~~i 269 (311)
.......+|++|.+ ++.++.+.+
T Consensus 279 ~~~~~~~~~g~~Y~~~~~~~~~a~y 303 (311)
T PF13609_consen 279 DDDATSYAVGVDYDFSKNTSLYAEY 303 (311)
T ss_dssp TEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred CCCeEEEEEEEEEEcCCCEEEEEEE
No 63
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=22.20 E-value=9.1e+02 Score=25.62 Aligned_cols=41 Identities=7% Similarity=0.056 Sum_probs=23.4
Q ss_pred EEECCCccEE-EEE--EeeccccceeEEEEEecCCCCcceeeEE
Q 021528 111 GRVLTDGRLN-ARV--KCDLSDNLSLKANAQLTNEPHMSHGMIN 151 (311)
Q Consensus 111 ~~~d~dg~L~-~~~--~~~~~~~l~~k~~~~~~~~~~~~~~~~~ 151 (311)
..||+|-... ..+ ...+.+.+-..+..|+..+.+....+++
T Consensus 526 ~gWDhd~g~dg~~~e~~~~~~~~~p~s~~~q~~kdkk~~~i~~e 569 (763)
T TIGR00993 526 HGWDHDCGYDGVNAERSFAVKEKFPASVTVQVTKDKKDFNIHLD 569 (763)
T ss_pred CCCccccCcCcccHHHHHHHHhcCcceEEEEEeechhhceeeee
Confidence 3788884443 233 3345666666777787665544444443
No 64
>PF12094 DUF3570: Protein of unknown function (DUF3570); InterPro: IPR021953 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 396 to 444 amino acids in length.
Probab=21.69 E-value=7.7e+02 Score=24.14 Aligned_cols=69 Identities=22% Similarity=0.195 Sum_probs=37.0
Q ss_pred ceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEecceEEEEEEcCCceEEeee--eecccCceEEEEEEEEecC
Q 021528 221 GMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYL--EERLNMGLNFILSAEIDHR 298 (311)
Q Consensus 221 g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~~~s~vk~~ids~g~v~~~~--e~~l~p~~~l~lS~~ld~~ 298 (311)
..+.+++.|-|++++.+.+.+.+....+ +.= -|--+|+ -+|.+|.....+ |++-....+..+...+++.
T Consensus 214 ~~~~lG~TQVl~k~~~~~~n~~~~~~~G-------yLs-dPYk~v~-~~D~~g~~~~~~~~E~rPd~R~k~~~~~r~~~~ 284 (420)
T PF12094_consen 214 YSLSLGLTQVLNKNLLVQFNYDYSYQEG-------YLS-DPYKRVY-FVDGNGDAQLALDYENRPDTRNKQALGLRLNYF 284 (420)
T ss_pred eeeeeeeEEEECcccEEEEEEEEEEcce-------ecC-CCcEEEE-EecCCCcccceechhcCCcchhccceeeeeeec
Confidence 3567899999999887776666644321 100 0111122 345555333333 4443336677777777643
No 65
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=20.45 E-value=1.4e+03 Score=27.33 Aligned_cols=41 Identities=10% Similarity=0.111 Sum_probs=31.2
Q ss_pred cceEEEEEEEEccCCeEEEEEeeeeec---cceeEEEEEEEEEe
Q 021528 220 TGMVALSYVQKLSEKVSLATDLMYNYM---SRDVTSSVGYDYIL 260 (311)
Q Consensus 220 ~g~~~~sY~~kvs~~l~lg~el~~~~~---~~~~~~~vG~~y~~ 260 (311)
.+++++..--+|++++.+=+++.++.. .++....+|.||++
T Consensus 1996 RaELKlGVeaqLnknLSLwanV~~Q~Gs~~Ysdt~G~LGVRYsW 2039 (2039)
T PRK15319 1996 RAELKVGLQADIDKQWSVRAQVAGQTGSNDFGDLNGSLNLRYNW 2039 (2039)
T ss_pred EEEEEeeEEEEECCCEEEEEEEeEEecCCCcccceEEEEeEEeC
Confidence 357888888888888888888888775 24667788888863
No 66
>PF09381 Porin_OmpG: Outer membrane protein G (OmpG); InterPro: IPR018981 Porins are channel proteins in the outer membrane of Gram-negative bacteria which mediate the uptake of molecules required for growth and survival. Escherichia coli OmpG forms a 14 stranded beta-barrel and in contrast to most porins, appears to function as a monomer []. The central pore of OmpG is wider than other E. coli porins and it is speculated that it may form a non-specific channel for the transport of larger oligosaccharides []. ; PDB: 2IWV_C 2F1C_X 2JQY_A 2IWW_B 2WVP_A 2X9K_A.
Probab=20.11 E-value=3.3e+02 Score=25.06 Aligned_cols=61 Identities=20% Similarity=0.123 Sum_probs=36.8
Q ss_pred eEEEEEEEEEecceE-------EEEEEcCCceEEeeeeecccCceEEEEEEEE---ecCCCC----eeeeEEEEe
Q 021528 250 VTSSVGYDYILRQCR-------LRGKIDSNGCAAAYLEERLNMGLNFILSAEI---DHRKKD----YKFGFGLTV 310 (311)
Q Consensus 250 ~~~~vG~~y~~~~s~-------vk~~ids~g~v~~~~e~~l~p~~~l~lS~~l---d~~~~~----~kfG~gl~~ 310 (311)
.+++=-.|+.++.+. ..=...+.-++|+.+++.+.|+++++|-=-. ||..++ |.-|+|++.
T Consensus 225 ~tiTPY~R~~LD~w~n~dw~~~~~re~~~~~RlGll~~~~~~~glsmtLEYAYE~q~hd~g~~~kfHy~GvGv~Y 299 (301)
T PF09381_consen 225 TTITPYTRIGLDRWSNWDWQDDLEREGHDFTRLGLLYEYDFPNGLSMTLEYAYEWQDHDEGDSDKFHYTGVGVNY 299 (301)
T ss_dssp EEEEEEEEEEEEEEESTTTTTSSS-EEEEEEEEEEEEEEESSSSEEEEEEEEEEEEEESSSSSEEEEEEEEEEEE
T ss_pred ceeccceEeeeecccccccccchhhcCCccceeEEEEecccCCCcEEEEeeeeehhhccCCcccceeeeccceee
Confidence 456666666664321 1112223357999999999998766654333 454432 777888863
No 67
>PRK10002 outer membrane protein F; Provisional
Probab=20.05 E-value=7.2e+02 Score=23.45 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=8.3
Q ss_pred eEEEEEEEEEecc
Q 021528 250 VTSSVGYDYILRQ 262 (311)
Q Consensus 250 ~~~~vG~~y~~~~ 262 (311)
..+.+|+.|.|.+
T Consensus 315 ~~~~lg~~Y~LSK 327 (362)
T PRK10002 315 NYFEVGATYYFNK 327 (362)
T ss_pred EEEEEEeEEEecC
Confidence 3567777777743
Done!